--- a/GetHaplotypesFromPhasedVCF/getHaplotypesFromPhasedVCF.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/GetHaplotypesFromPhasedVCF/getHaplotypesFromPhasedVCF.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,4 +1,6 @@
-<tool id="getHaplotypesFromPhasedVCF" name="Get Haplotypes From Phased VCF" version="1.0.0">
+<tool id="getHaplotypesFromPhasedVCF" name="Get Haplotypes From Phased VCF" version="2.0.0">
+    <description>Get Haplotypes From Phased VCF</description>
+
     <requirements>
 	<requirement type="binary">perl</requirement>
     </requirements>
@@ -19,8 +21,8 @@
     <tests>
         <test>
             <param name="input" value="getHaplotypesFromPhasedVCF-input.vcf"/>
-            <output name="output_distinct" file="getHaplotypesFromPhasedVCF-result.distinct_haplotypes.txt"/>
-            <output name="output_haplo" file="getHaplotypesFromPhasedVCF-result.haplo.fas"/>
+            <output name="output_distinct" file="getHaplotypesFromPhasedVCF-result.distinct_haplotypes.txt" compare="sim_size" delta="0"/>
+            <output name="output_haplo" file="getHaplotypesFromPhasedVCF-result.haplo.fas" compare="sim_size" delta="0"/>
         </test>
     </tests>
     <help><![CDATA[
@@ -33,11 +35,11 @@
 
 .. class:: infomark
 
-**Galaxy integration** Andres Gwendoline, Institut Français de Bioinformatique.
+**Galaxy integration** Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Support** For any questions, please send an e-mail to support.abims@sb-roscoff.fr
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
@@ -51,27 +53,6 @@
 
     | Get Haplotype from phased VCF
 
------------------
-Workflow position
------------------
-
-**Upstream tool**
-
-=============== ========================== =======
-Name            output file(s)             format
-=============== ========================== =======
-Beagle          Phased VCF file            VCF
-=============== ========================== =======
-
-
-**Downstream tool**
-
-=============== ========================== ===========
-Name            input file(s)              format
-=============== ========================== ===========
-=============== ========================== ===========
-
-
 ----------
 Input file
 ----------
@@ -79,9 +60,9 @@
 VCF file
         Phased VCF file
 
-----------
-Parameters
-----------
+---------
+Parameter
+---------
 
 Output file basename
         Prefix for the output VCF file
@@ -103,8 +84,8 @@
 Working example
 ---------------
 
-Input files
-===========
+Input file
+==========
 
 VCF file
 ---------
@@ -119,8 +100,8 @@
 	Chr1    4299    .       G       A       .       PASS    AR2=1;DR2=1;AF=0.168    GT:DS:GP        0|0:0:1,0,0    
 
                               
-Parameters
-==========
+Parameter
+=========
 
 Output name -> haplotypes