--- a/PedToFasta/pedToFasta.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/PedToFasta/pedToFasta.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="sniplay_pedToFasta" name="Ped2Fasta" version="1.0.0">
+<tool id="sniplay_pedToFasta" name="Ped2Fasta" version="2.0.0">
     
     <!-- [REQUIRED] Tool description displayed after the tool name -->
     <description> Convert PED file to Fasta File </description>
@@ -34,7 +34,7 @@
     
     <!-- [REQUIRED] Output files -->
     <outputs>
-	<data name="fileout" type="data" format="fasta" label="${fileout_label}.fa" />
+	<data name="fileout" format="fasta" label="${fileout_label}.fa" />
     </outputs>
     
     <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
@@ -47,7 +47,7 @@
     </tests>
     
     <!-- [OPTIONAL] Help displayed in Galaxy -->
-    <help>
+    <help><![CDATA[
 
 .. class:: infomark
 
@@ -57,11 +57,11 @@
 
 .. class:: infomark
 
-**Galaxy integration** Andres Gwendoline, Institut Français de Bioinformatique. 
+**Galaxy integration** Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Support** For any questions, please send an e-mail to support.abims@sb-roscoff.fr 
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
@@ -73,29 +73,7 @@
 Description
 -----------
 
-  Convert PED file to Fasta File
-
------------------
-Workflow position
------------------
-
-**Upstream tool**
-
-=============== ========================== =======
-Name            output file(s)             format 
-=============== ========================== =======
-VCFtools Filter VCF file  	 	   VCF
-=============== ========================== =======
-
-
-**Downstream tool**
-
-=========== ========================== =======
-Name            input file(s)          format
-=========== ========================== =======
-Readseq     Fasta alignment	       fasta
-=========== ========================== =======
-
+  | Convert PED file to Fasta File
 
 ----------
 Input file
@@ -104,16 +82,16 @@
 PED file
 	PED file usually from VCF tools
 
-----------
-Parameters
-----------
+---------
+Parameter
+---------
 
 Output file name
 	Prefix for the output fasta file
 
-------------
-Output files
-------------
+-----------
+Output file
+-----------
 
 Fasta file
 	PED file conversion 
@@ -124,8 +102,8 @@
 Working example
 ---------------
 
-Input files
-===========
+Input file
+==========
 
 PED file
 ---------
@@ -134,13 +112,13 @@
 
 	CATB1   CATB1   0       0       0       0       C       T       T       A       C       T       A       T       A       T       A       G       G       A
 
-Parameters
-==========
+Parameter
+=========
 
 Output name -> pedFile
 
-Output files
-============
+Output file
+===========
 
 pedFile.fa
 ----------
@@ -148,9 +126,7 @@
 ::
 
         YWYWWRRSYYMKRRKMYRKSRKYRYRYKRKRSKKSYRWYSYRRYRRRWYWWYYWRRYRSRWSSRMYRRKSWMSKWRRYYWMYKYWRSYRWRYMWYYYMKYKYWRYRYRY
-
-
-    </help>
+    ]]></help>
 
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->