diff check_gwas_inputs/CheckGWASInputs.xml @ 10:c6640c49fd01 draft

planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
author dereeper
date Mon, 16 Apr 2018 09:00:24 -0400
parents 98c37a5d67f4
children
line wrap: on
line diff
--- a/check_gwas_inputs/CheckGWASInputs.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/check_gwas_inputs/CheckGWASInputs.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,5 +1,5 @@
-<tool id="check_GWAS_inputs" name="Check GWAS Inputs" version="1.1">
-	<description>checks concordance between input files for GWAS analysis</description>
+<tool id="check_GWAS_inputs" name="Check GWAS Inputs" version="2.0.0">
+	<description>Checks concordance between input files for GWAS analysis</description>
 
     <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work -->
     <requirements>
@@ -32,15 +32,12 @@
          <param name="hapmap" value="gwas-hapmap" />
          <param name="trait" value="gwas-trait" />
          <output name="out_hapmap" file="gwas-result.hapmap" />
-         <output name="out_trait" file="gwas-result.trait" />
+         <output name="out_trait" file="gwas-result.trait" compare="sim_size" delta="0"/>
          <output name="stats" file="gwas-result.stats" />
         </test>
     </tests>
-	<help>
+	<help><![CDATA[
 	
-        <![CDATA[
-
-
 .. class:: infomark
 
 **Authors** South Green
@@ -49,11 +46,14 @@
 
 .. class:: infomark
 
-**Galaxy integration** South Green.
+**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)
+
+.. class:: infomark
+
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-
 ===============
 CheckGWASInputs
 ===============
@@ -64,25 +64,9 @@
 
   | CheckGWASInputs checks concordance between input files for GWAS analysis.
 
-
------------------
-Workflow position
------------------
-
-**Upstream tool**
-
-=============== ====================== ===========
-Name            output file(s)         format 
-=============== ====================== ===========
-VCF to Hapmap   Hapmap file	       hapmap
-=============== ====================== ===========
-
-
-
-
-----------
-Input file
-----------
+-----------
+Input files
+-----------
 
 Hapmap file
 	Allelic file in Hapmap format
@@ -171,10 +155,7 @@
         Modified markers:
         Difference in variation: 0
 
-        ]]>
-
-	
-	</help>
+	]]></help>
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
     	<citation type="bibtex">@article{Dereeper03062015,