Mercurial > repos > dereeper > sniplay
diff check_gwas_inputs/CheckGWASInputs.xml @ 10:c6640c49fd01 draft
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
author | dereeper |
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date | Mon, 16 Apr 2018 09:00:24 -0400 |
parents | 98c37a5d67f4 |
children |
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--- a/check_gwas_inputs/CheckGWASInputs.xml Wed Feb 07 22:08:47 2018 -0500 +++ b/check_gwas_inputs/CheckGWASInputs.xml Mon Apr 16 09:00:24 2018 -0400 @@ -1,5 +1,5 @@ -<tool id="check_GWAS_inputs" name="Check GWAS Inputs" version="1.1"> - <description>checks concordance between input files for GWAS analysis</description> +<tool id="check_GWAS_inputs" name="Check GWAS Inputs" version="2.0.0"> + <description>Checks concordance between input files for GWAS analysis</description> <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work --> <requirements> @@ -32,15 +32,12 @@ <param name="hapmap" value="gwas-hapmap" /> <param name="trait" value="gwas-trait" /> <output name="out_hapmap" file="gwas-result.hapmap" /> - <output name="out_trait" file="gwas-result.trait" /> + <output name="out_trait" file="gwas-result.trait" compare="sim_size" delta="0"/> <output name="stats" file="gwas-result.stats" /> </test> </tests> - <help> + <help><![CDATA[ - <![CDATA[ - - .. class:: infomark **Authors** South Green @@ -49,11 +46,14 @@ .. class:: infomark -**Galaxy integration** South Green. +**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA) + +.. class:: infomark + +**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr --------------------------------------------------- - =============== CheckGWASInputs =============== @@ -64,25 +64,9 @@ | CheckGWASInputs checks concordance between input files for GWAS analysis. - ------------------ -Workflow position ------------------ - -**Upstream tool** - -=============== ====================== =========== -Name output file(s) format -=============== ====================== =========== -VCF to Hapmap Hapmap file hapmap -=============== ====================== =========== - - - - ----------- -Input file ----------- +----------- +Input files +----------- Hapmap file Allelic file in Hapmap format @@ -171,10 +155,7 @@ Modified markers: Difference in variation: 0 - ]]> - - - </help> + ]]></help> <citations> <!-- [HELP] As DOI or BibTex entry --> <citation type="bibtex">@article{Dereeper03062015,