Mercurial > repos > dereeper > sniplay

diff hapmap2mlmm/HapmapToMLMMFiles.pl @ 10:c6640c49fd01 draft

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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
author dereeper
date Mon, 16 Apr 2018 09:00:24 -0400
parents 98c37a5d67f4
children
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--- a/hapmap2mlmm/HapmapToMLMMFiles.pl	Wed Feb 07 22:08:47 2018 -0500
+++ b/hapmap2mlmm/HapmapToMLMMFiles.pl	Mon Apr 16 09:00:24 2018 -0400
@@ -98,7 +98,7 @@
 }
 close($M);
 
-system("$TRANSPOSE_EXE geno_transposed >geno_transposed2");
+system("gawk -E $TRANSPOSE_EXE geno_transposed >geno_transposed2");
 
 open(my $F,">$geno");
 open(my $G,"geno_transposed2");