--- a/ped2bed/ped2bed.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/ped2bed/ped2bed.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="ped2bed" name="plink: ped2bed" version="1.24">
+<tool id="ped2bed" name="PLINK: ped2bed" version="2.0.0">
 	<description>Convert ped to bed</description>
 	<requirements>
         	<requirement type="binary">perl</requirement>
@@ -35,30 +35,27 @@
          <output name="bim" file="ped2bed-result.bim" />
         </test>
     </tests>
-	<help>
+	<help><![CDATA[
 	
 
 .. class:: infomark
 
-**Authors** plink_
+Ped to Bed format conversion is done with PLINK.
+**Authors** PLINK: Shaun Purcell (https://www.cog-genomics.org/plink)
 
-.. _plink: http://pngu.mgh.harvard.edu/purcell/plink/
-
-  | "PLINK: a toolset for whole-genome association and population-based linkage analysis.", **Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ, Sham PC.**, American Journal of Human Genetics, 81, 2007.
+  | **Please cite** "PLINK: a toolset for whole-genome association and population-based linkage analysis.", **Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ, Sham PC.**, American Journal of Human Genetics, 81, 2007.
+  | **Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
 
 .. class:: infomark
 
-**Galaxy integration** South Green.
+**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
-
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-
-
 =======
 Ped2Bed
 =======
@@ -67,45 +64,31 @@
 Description
 -----------
 
+  | Ped to Bed format conversion is done with PLINK
   | PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
-  | For further informations, please visite the plink website_.
-
-.. _website: http://pngu.mgh.harvard.edu/purcell/plink/
-
+  | For further informations, please visit the PLINK website_.
 
------------------
-Workflow position
------------------
-
-**Upstream tool**
+.. _website: https://www.cog-genomics.org/plink
 
-=============== ========================== ===========
-Name            output file(s)             format 
-=============== ========================== ===========
-VCFtools filter PED and map files          ped and map
-=============== ========================== ===========
-
-
-**Downstream tool**
+------------
+Dependencies
+------------
+PLINK
+	plink_ 1.90b4, Conda version
+Bioperl
+        perl-bioperl_ 1.6.924, Conda version
 
-=========== ========================== =======
-Name            input file(s)          format
-=========== ========================== =======
-Admixture   Bed, fam and bim file      txt
-=========== ========================== =======
+.. _plink: https://anaconda.org/bioconda/plink
+.. _perl-bioperl: https://anaconda.org/bioconda/perl-bioperl
 
-
-----------
-Input file
-----------
+-----------
+Input files
+-----------
 
 PED file
-	Allelic file in PED format 
 
 MAP file
 
-
-
 ------------
 Output files
 ------------
@@ -117,14 +100,6 @@
 Bim file
 
 All logs 
-	Log file
-
-
-------------
-Dependencies
-------------
-plink 
-	version 1.07
 
 ---------------------------------------------------
 
@@ -181,7 +156,7 @@
 	0	Chr8:18058	0	18058	C	T
 
 
-	</help>
+	]]></help>
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
     	<citation type="bibtex">@article{Dereeper03062015,