Mercurial > repos > dereeper > sniplay

view SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh @ 11:15b23cdde685 draft

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planemo upload commit 305985afd3b7c3d47f531149c2f1a279af2d12aa-dirty
author dereeper
date Fri, 20 Apr 2018 09:04:25 -0400
parents ebb0ac9b6fa9
children
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#!/bin/bash

tool_path=$(dirname $0)
input=$1
fileout=$2
fileout_bysample=$3
step=$4

perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromVCF.pl -i $input -o $fileout -s $step

cp  $fileout.by_sample $fileout_bysample
rm $fileout.by_sample