Mercurial > repos > dereeper > sniplay

view SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF.sh @ 9:98c37a5d67f4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dereeper
date Wed, 07 Feb 2018 22:08:47 -0500
parents ebb0ac9b6fa9
children
line wrap: on
line source

#!/bin/bash

tool_path=$(dirname $0)
input=$1
fileout=$2
fileout_bysample=$3
step=$4

perl $tool_path/CalculateSlidingWindowsSNPdensitiesFromVCF.pl -i $input -o $fileout -s $step

cp  $fileout.by_sample $fileout_bysample
rm $fileout.by_sample