Mercurial > repos > dereeper > sniplay
view ped2bed/ped2bed.sh @ 5:ec22fcacb66c draft
planemo upload
author | gandres |
---|---|
date | Mon, 15 Feb 2016 10:26:18 -0500 |
parents | 420b57c3c185 |
children |
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#!/bin/bash ped=$1 map=$2 bed=$3 fam=$4 bim=$5 logs=$6 directory=`dirname $0` mkdir tmpdir$$ cp -rf $ped tmpdir$$/input.ped cp -rf $map tmpdir$$/input.map plink --file tmpdir$$/input --out tmpdir$$/out --make-bed --noweb >>$logs 2>&1 mv tmpdir$$/out.bed $bed mv tmpdir$$/out.fam $fam mv tmpdir$$/out.bim $bim