# HG changeset patch
# User dereeper
# Date 1523883624 14400
# Node ID c6640c49fd01f79e9320326f2b22820e47b25900
# Parent  98c37a5d67f43a2bb2f4a94d59f8733e9f028861
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac

diff -r 98c37a5d67f4 -r c6640c49fd01 AnnotationStatsFromVCF/annotationStatsFromVCF
--- a/AnnotationStatsFromVCF/annotationStatsFromVCF	Wed Feb 07 22:08:47 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,10 +0,0 @@
-Chrom	Bin	dN/dS ratio
-chr1	20000	0.606060606060606
-chr1	40000	0
-chr1	60000	5.5
-chr1	80000	0.363636363636364
-chr1	100000	0.764705882352941
-chr1	120000	1
-chr1	140000	1.11111111111111
-chr1	160000	7
-chr1	180000	2
diff -r 98c37a5d67f4 -r c6640c49fd01 AnnotationStatsFromVCF/annotationStatsFromVCF.effect
--- a/AnnotationStatsFromVCF/annotationStatsFromVCF.effect	Wed Feb 07 22:08:47 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3 +0,0 @@
-Intron	960	Intron:960
-UTR	281	UTR:281
-Exon	3248	Synonym:124	Non-syn:120
diff -r 98c37a5d67f4 -r c6640c49fd01 AnnotationStatsFromVCF/annotationStatsFromVCF.location
--- a/AnnotationStatsFromVCF/annotationStatsFromVCF.location	Wed Feb 07 22:08:47 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-Intergenic	466	Intergenic:466
-Genic	4489	Exon:3248	Intron:960	UTR:281
diff -r 98c37a5d67f4 -r c6640c49fd01 AnnotationStatsFromVCF/annotationStatsFromVCF_wrapper.xml
--- a/AnnotationStatsFromVCF/annotationStatsFromVCF_wrapper.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/AnnotationStatsFromVCF/annotationStatsFromVCF_wrapper.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,8 +1,9 @@
-<tool id="annotationStatsFromVCF" name="Get annotation statistics" version="1.0.0">
-    <description> from VCF file </description>
+<tool id="annotationStatsFromVCF" name="Get VCF annotation statistics" version="2.0.0">
+    <description>Get annotation fromi a VCF file annotated by snpeff</description>
     <requirements>
 	<requirement type="binary">perl</requirement>
-	<requirement type="package" version="0.1.12b">vcftools</requirement>
+        <requirement type="package" version="1.6.924">perl-bioperl</requirement>
+	<requirement type="package" version="0.1.14">vcftools</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
@@ -12,19 +13,21 @@
     </command>
     <inputs>
         <param type="data" name="input" format="vcf" label="VCF file" />
-        <param type="text" name="output_label" label="Output_label" value='VCF_stats' />
+        <param name="step" type="integer" value="200000" label="Step" help="Step in bp"/>
+        <param type="text" name="output_label" label="Output_label" value='VCF_stats' optional='false' />
     </inputs>
     <outputs>
-        <data name="output_count" format="txt" label="${output_label}."/>
-	<data name="output_stats_effect" format="txt" label="${output_label}."/>
-	<data name="output_stats_location" format="txt" label="${output_label}."/>
+        <data name="output_count" format="txt" label="${output_label}"/>
+	<data name="output_stats_effect" format="txt" label="${output_label}.effect"/>
+	<data name="output_stats_location" format="txt" label="${output_label}.location"/>
     </outputs>
     <tests>
         <test>
-            <param name="input" value="vcf2fastaAndHapmap-sample.vcf"/>
-            <output name="output_count" file="vcf2fastaAndHapmap-sample.vcf"/>
-            <output name="output_stats_effect" file="vcf2fastaAndHapmap-sample.vcf"/>
-	    <output name="output_stats_location" file="vcf2fastaAndHapmap-sample.vcf"/>
+            <param name="input" value="annotationStatsFromVCF.vcf"/>
+            <param name="step" value="50000"/>
+            <output name="output_count" file="annotationStatsFromVCF.txt"/>
+            <output name="output_stats_effect" file="annotationStatsFromVCF.effect"/>
+	    <output name="output_stats_location" file="annotationStatsFromVCF.location"/>
         </test>
     </tests>
     <help><![CDATA[
@@ -37,69 +40,61 @@
 
 .. class:: infomark
 
-**Galaxy integration** Andres Gwendoline, Institut Français de Bioinformatique.
+**Galaxy integration** Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Support** For any questions, please send an e-mail to support.abims@sb-roscoff.fr
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-==============================
-Get Haplotypes From Phased VCF
-==============================
+=========================
+Get annotation statistics
+=========================
 
 -----------
 Description
 -----------
 
-    | Get Haplotype from phased VCF
-
------------------
-Workflow position
------------------
-
-**Upstream tool**
+    | Get annotation statistics from VCF
 
-=============== ========================== =======
-Name            output file(s)             format
-=============== ========================== =======
-Beagle          Phased VCF file            VCF
-=============== ========================== =======
-
+------------
+Dependencies
+------------
+VCFtools
+        vcftools_ 0.1.14, Conda version
+Bioperl
+        perl-bioperl_ 1.6.924, Conda version
 
-**Downstream tool**
-
-=============== ========================== ===========
-Name            input file(s)              format
-=============== ========================== ===========
-=============== ========================== ===========
-
+.. _vcftools: https://anaconda.org/bioconda/vcftools
+.. _perl-bioperl: https://anaconda.org/bioconda/perl-bioperl
 
 ----------
 Input file
 ----------
 
 VCF file
-        Phased VCF file
+        VCF file
 
 ----------
 Parameters
 ----------
 
-Output file basename
-        Prefix for the output VCF file
+Step
+        Step in bp 
+
+Output label
+        Prefix for the ouput files
 
 ------------
 Output files
 ------------
 
+Output_name
 
-Text file
-        File describing haplotypes
+Output_name.effect file
 
-Fasta file
-        Fasta file with haplotypes
+Output_name.location file
 
 ---------------------------------------------------
 
@@ -107,8 +102,8 @@
 Working example
 ---------------
 
-Input files
-===========
+Input file
+==========
 
 VCF file
 ---------
@@ -126,33 +121,41 @@
 Parameters
 ==========
 
-Output name -> haplotypes
+Step -> 50000
+Output label -> VCF_stats
 
 
 Output files
 ============
 
-haplotypes.distinct_haplotypes.txt
+VCF_stats
 ----------------------------------
 
 ::
 
-	===Chr10===
-	haplo1:2:CIRAD403_1,CIRAD403_2,
-	TTTAAGAAATTCCTATATAGGTCTTCTAAGCGTATCTATTAACAT
-	haplo2:2:MAHAE_1,MAHAE_2,
-	TAAATCTTGGTGCTGATCTGATATTTAATGCGT
+        Chrom	Bin	dN/dS ratio
+        chr1	50000	0.791666666666667
+        chr1	100000	0.981132075471698
+        chr1	150000	2.08333333333333
 
 
-haplotypes.haplo.fas
+VCF_stats.effect
 --------------------
 
 ::
 
-	>Chr10_AZUCENA_1
-	TTTAAGAAATTCCTATATAGGTCTTCTAAGCGTATCTATTAACAT
-	>Chr10_AZUCENA_2
-	TAAATCTTGGTGCTGATCTGATATTTAATGCGT
+        Intron	960	Intron:960
+        UTR	281	UTR:281
+        Exon	3248	Synonym:124	Non-syn:120
+
+VCF_stats.location
+--------------------
+
+::
+
+        Intergenic	466	Intergenic:466
+        Genic	4489	Exon:3248	Intron:960	UTR:281
+
 
     ]]></help>
     <citations>
diff -r 98c37a5d67f4 -r c6640c49fd01 GetHaplotypesFromPhasedVCF/getHaplotypesFromPhasedVCF.xml
--- a/GetHaplotypesFromPhasedVCF/getHaplotypesFromPhasedVCF.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/GetHaplotypesFromPhasedVCF/getHaplotypesFromPhasedVCF.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,4 +1,6 @@
-<tool id="getHaplotypesFromPhasedVCF" name="Get Haplotypes From Phased VCF" version="1.0.0">
+<tool id="getHaplotypesFromPhasedVCF" name="Get Haplotypes From Phased VCF" version="2.0.0">
+    <description>Get Haplotypes From Phased VCF</description>
+
     <requirements>
 	<requirement type="binary">perl</requirement>
     </requirements>
@@ -19,8 +21,8 @@
     <tests>
         <test>
             <param name="input" value="getHaplotypesFromPhasedVCF-input.vcf"/>
-            <output name="output_distinct" file="getHaplotypesFromPhasedVCF-result.distinct_haplotypes.txt"/>
-            <output name="output_haplo" file="getHaplotypesFromPhasedVCF-result.haplo.fas"/>
+            <output name="output_distinct" file="getHaplotypesFromPhasedVCF-result.distinct_haplotypes.txt" compare="sim_size" delta="0"/>
+            <output name="output_haplo" file="getHaplotypesFromPhasedVCF-result.haplo.fas" compare="sim_size" delta="0"/>
         </test>
     </tests>
     <help><![CDATA[
@@ -33,11 +35,11 @@
 
 .. class:: infomark
 
-**Galaxy integration** Andres Gwendoline, Institut Français de Bioinformatique.
+**Galaxy integration** Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Support** For any questions, please send an e-mail to support.abims@sb-roscoff.fr
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
@@ -51,27 +53,6 @@
 
     | Get Haplotype from phased VCF
 
------------------
-Workflow position
------------------
-
-**Upstream tool**
-
-=============== ========================== =======
-Name            output file(s)             format
-=============== ========================== =======
-Beagle          Phased VCF file            VCF
-=============== ========================== =======
-
-
-**Downstream tool**
-
-=============== ========================== ===========
-Name            input file(s)              format
-=============== ========================== ===========
-=============== ========================== ===========
-
-
 ----------
 Input file
 ----------
@@ -79,9 +60,9 @@
 VCF file
         Phased VCF file
 
-----------
-Parameters
-----------
+---------
+Parameter
+---------
 
 Output file basename
         Prefix for the output VCF file
@@ -103,8 +84,8 @@
 Working example
 ---------------
 
-Input files
-===========
+Input file
+==========
 
 VCF file
 ---------
@@ -119,8 +100,8 @@
 	Chr1    4299    .       G       A       .       PASS    AR2=1;DR2=1;AF=0.168    GT:DS:GP        0|0:0:1,0,0    
 
                               
-Parameters
-==========
+Parameter
+=========
 
 Output name -> haplotypes
 
diff -r 98c37a5d67f4 -r c6640c49fd01 MDSplot/mdsplot.xml
--- a/MDSplot/mdsplot.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/MDSplot/mdsplot.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="sniplay_mdsplot" name="MDS plot" version="1.2.0">
+<tool id="sniplay_mdsplot" name="PLINK: MDS plot" version="2.0.0">
     
     <!-- [REQUIRED] Tool description displayed after the tool name -->
     <description> IBS matrix / multi-dimensional scaling</description>
@@ -39,58 +39,44 @@
     
     <!-- [REQUIRED] Output files -->
     <outputs>
-	<data name="fileout_matrix" type="data" format="txt" label="${fileout_label}.ibs_matrix.txt" />
-	<data name="fileout_plot" type="data" format="txt" label="${fileout_label}.mds_plot.txt" />
-	<data name="fileout_log" type="data" format="txt" label="${fileout_label}.log" />
+	<data name="fileout_matrix" format="txt" label="${fileout_label}.ibs_matrix.txt" />
+	<data name="fileout_plot" format="txt" label="${fileout_label}.mds_plot.txt" />
+	<data name="fileout_log" format="txt" label="${fileout_label}.log" />
     </outputs>
     
     <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
     <tests>
         <!-- [HELP] Test files have to be in the ~/test-data directory -->
-
         <test>
          <param name="fileped" value="MDSplot-input.ped" />
 	 <param name="filemap" value="MDSplot-input.map" />
          <output name="fileout_matrix" file="MDSplot-output.ibs_matrix.txt" />
 	 <output name="fileout_plot" file="MDSplot-output.mds_plot.txt" />
         </test>
-
-        <!-- [HELP] Multiple tests can be defined with different parameters -->
-<!--
-        <test>
-        </test>
--->
     </tests>
     
     <!-- [OPTIONAL] Help displayed in Galaxy -->
-    <help>
+    <help><![CDATA[
 
 
 .. class:: infomark
 
-**Authors** plink_
+MDS plot is done with PLINK.
+**Authors** PLINK: Shaun Purcell (https://www.cog-genomics.org/plink)
 
-.. _plink: http://pngu.mgh.harvard.edu/purcell/plink/
-
-  | "PLINK: a toolset for whole-genome association and population-based linkage analysis.", **Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ, Sham PC.**, American Journal of Human Genetics, 81, 2007.
-
+  | **Please cite** "PLINK: a toolset for whole-genome association and population-based linkage analysis.", **Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ, Sham PC.**, American Journal of Human Genetics, 81, 2007.
+  | **Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
 
 .. class:: infomark
 
-**Galaxy integration** Andres Gwendoline, Institut Français de Bioinformatique.
+**Galaxy integration** Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Support** For any questions about Galaxy integration, please send an e-mail to support.abims@sb-roscoff.fr
-
-.. class:: infomark
-
-**Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-
-
 ========
 MDS plot
 ========
@@ -99,36 +85,41 @@
 Description
 -----------
 
-  Compute an IBS matrix and a multi-dimensional scaling.
-
-
------------------
-Workflow position
------------------
-
-**Upstream tool**
-
-=============== ========================== ===============
-Name            output file(s)             format 
-=============== ========================== ===============
-VCFtools Filter PED and MAP file	   tabular and MAP
-=============== ========================== ===============
+  | MDS plot compute an IBS matrix and a multi-dimensional scaling.
+  |
+  | MDS plot is done with PLINK
+  | PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
+  | For further informations, please visit the PLINK website_.
 
 
 
-----------
-Input file
-----------
+.. _website: https://www.cog-genomics.org/plink
+
+------------
+Dependencies
+------------
+PLINK
+        plink_ 1.90b4, Conda version
+Bioperl
+        perl-bioperl_ 1.6.924, Conda version
+
+.. _plink: https://anaconda.org/bioconda/plink
+.. _perl-bioperl: https://anaconda.org/bioconda/perl-bioperl
+
+-----------
+Input files
+-----------
 
 PED file
+	PED file usually from VCF tools
 
 MAP file
 	4 columns tabular file: chromosome, snp id, genetic distance, bp position 
 
 
-----------
-Parameters
-----------
+---------
+Parameter
+---------
 
 Output name
         Output base name for the ouput files
@@ -146,12 +137,6 @@
 
 Output_name.log
 	Log file
-
-------------
-Dependencies
-------------
-plink 
-	version 1.07
 	
 ---------------------------------------------------
 
@@ -184,8 +169,8 @@
 
 
 
-Parameters
-==========
+Parameter
+=========
 
 Output name -> densities
 
@@ -213,7 +198,7 @@
 
 	
 
-    </help>
+    ]]></help>
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
     	<citation type="bibtex">@article{Dereeper03062015,
diff -r 98c37a5d67f4 -r c6640c49fd01 PedToFasta/pedToFasta.xml
--- a/PedToFasta/pedToFasta.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/PedToFasta/pedToFasta.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="sniplay_pedToFasta" name="Ped2Fasta" version="1.0.0">
+<tool id="sniplay_pedToFasta" name="Ped2Fasta" version="2.0.0">
     
     <!-- [REQUIRED] Tool description displayed after the tool name -->
     <description> Convert PED file to Fasta File </description>
@@ -34,7 +34,7 @@
     
     <!-- [REQUIRED] Output files -->
     <outputs>
-	<data name="fileout" type="data" format="fasta" label="${fileout_label}.fa" />
+	<data name="fileout" format="fasta" label="${fileout_label}.fa" />
     </outputs>
     
     <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
@@ -47,7 +47,7 @@
     </tests>
     
     <!-- [OPTIONAL] Help displayed in Galaxy -->
-    <help>
+    <help><![CDATA[
 
 .. class:: infomark
 
@@ -57,11 +57,11 @@
 
 .. class:: infomark
 
-**Galaxy integration** Andres Gwendoline, Institut Français de Bioinformatique. 
+**Galaxy integration** Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Support** For any questions, please send an e-mail to support.abims@sb-roscoff.fr 
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
@@ -73,29 +73,7 @@
 Description
 -----------
 
-  Convert PED file to Fasta File
-
------------------
-Workflow position
------------------
-
-**Upstream tool**
-
-=============== ========================== =======
-Name            output file(s)             format 
-=============== ========================== =======
-VCFtools Filter VCF file  	 	   VCF
-=============== ========================== =======
-
-
-**Downstream tool**
-
-=========== ========================== =======
-Name            input file(s)          format
-=========== ========================== =======
-Readseq     Fasta alignment	       fasta
-=========== ========================== =======
-
+  | Convert PED file to Fasta File
 
 ----------
 Input file
@@ -104,16 +82,16 @@
 PED file
 	PED file usually from VCF tools
 
-----------
-Parameters
-----------
+---------
+Parameter
+---------
 
 Output file name
 	Prefix for the output fasta file
 
-------------
-Output files
-------------
+-----------
+Output file
+-----------
 
 Fasta file
 	PED file conversion 
@@ -124,8 +102,8 @@
 Working example
 ---------------
 
-Input files
-===========
+Input file
+==========
 
 PED file
 ---------
@@ -134,13 +112,13 @@
 
 	CATB1   CATB1   0       0       0       0       C       T       T       A       C       T       A       T       A       T       A       G       G       A
 
-Parameters
-==========
+Parameter
+=========
 
 Output name -> pedFile
 
-Output files
-============
+Output file
+===========
 
 pedFile.fa
 ----------
@@ -148,9 +126,7 @@
 ::
 
         YWYWWRRSYYMKRRKMYRKSRKYRYRYKRKRSKKSYRWYSYRRYRRRWYWWYYWRRYRSRWSSRMYRRKSWMSKWRRYYWMYKYWRSYRWRYMWYYYMKYKYWRYRYRY
-
-
-    </help>
+    ]]></help>
 
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
diff -r 98c37a5d67f4 -r c6640c49fd01 README.txt
--- a/README.txt	Wed Feb 07 22:08:47 2018 -0500
+++ b/README.txt	Mon Apr 16 09:00:24 2018 -0400
@@ -1,6 +1,6 @@
 ###################################################################
 
 In this repository you will find tools adapted for SNiPlay workflow. But not all required tools for running the workflow.
-If you want to run the entire SNiPlay workflow, please search "sniplay2_complete_workflow".
+If you want to run the entire SNiPlay workflow, please search for the complete_workflow.
 
 ###################################################################
diff -r 98c37a5d67f4 -r c6640c49fd01 Rooting/rooting.xml
--- a/Rooting/rooting.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/Rooting/rooting.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="sniplay_rooting" name="Rooting" version="1.0.3">
+<tool id="sniplay_rooting" name="Rooting" version="2.0.0">
     
     <!-- [REQUIRED] Tool description displayed after the tool name -->
     <description> Midpoint rooting of newick tree </description>
@@ -6,7 +6,7 @@
     <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work -->
     <requirements>
         <requirement type="binary">perl</requirement>
-	<requirement type="package">Rootings_54.jar</requirement>
+        <requirement type="package" version="1.6.924">perl-bioperl</requirement>
     </requirements>
 
     <!-- [STRONGLY RECOMMANDED] Exit code rules -->
@@ -30,58 +30,44 @@
    
     <!-- [REQUIRED] Input files and tool parameters -->
     <inputs>
-	<param name="filein" type="data" format="nwk" optional="false" label="Fasta alignment input" />
+	<param name="filein" type="data" format="nwk,nhx" optional="false" label="Newick tree input" />
 	<param name="fileout_label" type="text" value="out tree" label="Output name" help="Output name for files" />
     </inputs> 
     
     <!-- [REQUIRED] Output files -->
     <outputs>
-	<data name="fileout_log" type="data" format="txt" label="${fileout_label}.log" />
-	<data name="fileout" type="data" format="nwk" label="${fileout_label}" />
+	<data name="fileout_log" format="txt" label="${fileout_label}.log" />
+	<data name="fileout" format="nwk,nhx" label="${fileout_label}" />
     </outputs>
     
     <!-- [OPTIONAL] Tests to be run manually by the Galaxy admin -->
     <tests>
         <!-- [HELP] Test files have to be in the ~/test-data directory -->
-
         <test>
          <param name="filein" value="rooting-newick" />
          <output name="fileout" file="rooting-out_tree" />
         </test>
-
-        <!-- [HELP] Multiple tests can be defined with different parameters -->
-<!--
-        <test>
-        </test>
--->
     </tests>
     
     <!-- [OPTIONAL] Help displayed in Galaxy -->
-    <help>
-
+    <help><![CDATA[
 
 .. class:: infomark
 
 **Authors** Jean-François Dufayard, CIRAD, South Green platform
 
-
-.. class:: infomark
-
-**Galaxy integration** Andres Gwendoline, Institut Français de Bioinformatique.
+ | **Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
 
 .. class:: infomark
 
-**Support** For any questions about Galaxy integration, please send an e-mail to support.abims@sb-roscoff.fr
+**Galaxy integration** Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-
-
-
 =======
 Rooting
 =======
@@ -92,27 +78,20 @@
 
   Compute a midpoint newick rooted tree.
 
-
------------------
-Workflow position
------------------
-
-**Upstream tool**
+------------
+Dependencies
+------------
+Bioperl
+        perl-bioperl_ 1.6.924, Conda version
 
-=========== ========================== =======
-Name            output file(s)         format 
-=========== ========================== =======
-fastme      Newick tree                Newick 
-=========== ========================== =======
-
-
+.. _perl-bioperl: https://anaconda.org/bioconda/perl-bioperl
 
 ----------
 Input file
 ----------
 
 Newick file
-	
+        Input tree file
 
 ----------
 Parameters
@@ -144,8 +123,8 @@
 Working example
 ---------------
 
-Input files
-===========
+Input file
+==========
 
 Newick file
 -----------
@@ -155,14 +134,14 @@
 	(((((((((((((((((((((((((GOGOLEMPUK:0.001198,GOGOLEMPAK:0.002128):0.030378,TREMBESE:0.013258):0.055246,(((JIMBRUKJOL:0.045219,KETANKONIR:0.035298):0.006267, ...
 
 
-Parameters
-==========
+Parameter
+=========
 
 Output name -> out tree
 
 
-Output files
-============
+Output file
+===========
 
 out tree
 --------
@@ -172,7 +151,7 @@
 	(ref:0.9384270000000001,(((((((((((((((((((((((((((((((((((IRAT257:0.044246,IRAT112:0.023421):0.009006,ARAGUAIA:0.093061):0.004662...
 	
 
-    </help>
+    ]]></help>
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
     	<citation type="bibtex">@article{Dereeper03062015,
diff -r 98c37a5d67f4 -r c6640c49fd01 SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF_wrapper.xml
--- a/SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF_wrapper.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/SNP_density/calculateSlidingWindowsSNPdensitiesFromVCF_wrapper.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -3,7 +3,6 @@
     <!-- [REQUIRED] Tool description displayed after the tool name -->
     <description> Calculate SNP densities along chromosome from a VCF input</description>
 
-
     <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work -->
     <requirements>
         <requirement type="binary">perl</requirement>
@@ -58,7 +57,7 @@
     </tests>
     
     <!-- [OPTIONAL] Help displayed in Galaxy -->
-    <help>
+    <help><![CDATA[
 
 .. class:: infomark
 
@@ -66,19 +65,16 @@
 
  | **Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
 
+.. class:: infomark
+
+**Galaxy integration** Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Galaxy integration** Andres Gwendoline, Institut Français de Bioinformatique.
-
-.. class:: infomark
-
-**Support** For any questions about Galaxy integration, please send an e-mail to support.abims@sb-roscoff.fr
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-
-
 =============
 SNP densities
 =============
@@ -89,18 +85,19 @@
 
   Calculate SNP densities along chromosome from a VCF file
 
-
------------------
-Workflow position
------------------
+------------
+Dependencies
+------------
+VCFtools
+        vcftools_ 0.1.14, Conda version
+VCFtools Perl libraries
+	perl-vcftools-vcf_ 0.1.14, Conda version
+Bioperl
+	perl-bioperl_ 1.6.924, Conda version
 
-**Upstream tool**
-
-=============== ====================== ===========
-Name            output file(s)         format 
-=============== ====================== ===========
-=============== ====================== ===========
-
+.. _vcftools: https://anaconda.org/bioconda/vcftools
+.. _perl-vcftools-vcf: https://anaconda.org/bioconda/perl-vcftools-vcf
+.. _perl-bioperl: https://anaconda.org/bioconda/perl-bioperl
 
 ----------
 Input file
@@ -109,7 +106,6 @@
 VCF file
 	File with SNPs
 
-
 ----------
 Parameters
 ----------
@@ -120,7 +116,6 @@
 Output name
         Output base name for the two ouput files
 
-
 ------------
 Output files
 ------------
@@ -130,7 +125,6 @@
 
 Output_name.by_sample
 	Tabular file with SNP density for each sample
-
 	
 ---------------------------------------------------
 
@@ -138,8 +132,8 @@
 Working example
 ---------------
 
-Input files
-===========
+Input file
+==========
 
 vcf file
 -----------
@@ -187,7 +181,7 @@
 	chr1       43   43   40
 	chr1       139  167  141
 
-    </help>
+    ]]></help>
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
     	<citation type="bibtex">@article{Dereeper03062015,
diff -r 98c37a5d67f4 -r c6640c49fd01 VCF2Hapmap/vcf2FastaAndHapmap.xml
--- a/VCF2Hapmap/vcf2FastaAndHapmap.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/VCF2Hapmap/vcf2FastaAndHapmap.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="sniplay_vcf2fastaandhapmap" name="VCF to Hapmap" version="1.1.0">
+<tool id="sniplay_vcf2fastaandhapmap" name="VCF to Hapmap" version="2.0.0">
     
     <!-- [REQUIRED] Tool description displayed after the tool name -->
     <description> Convert VCF to Hapmap  </description>
@@ -86,12 +86,12 @@
          <param name="filegff" value="vcf2fastaAndHapmap-reference.gff" />
          <output name="fileout" file="vcf2fastaAndHapmap-result3.hapmap" />
          <output name="fileout_seq" file="vcf2fastaAndHapmap-result3.flanking.txt" />
-         <output name="fileout_fa1" file="vcf2fastaAndHapmap-result3.gene_alignment.fas" />
+         <output name="fileout_fa1" file="vcf2fastaAndHapmap-result3.gene_alignment.fas" compare="sim_size" delta="0"/>
         </test>
     </tests>
     
     <!-- [OPTIONAL] Help displayed in Galaxy -->
-    <help>
+    <help><![CDATA[
 
 
 .. class:: infomark
@@ -102,11 +102,11 @@
 
 .. class:: infomark
 
-**Galaxy integration** Andres Gwendoline, Institut Français de Bioinformatique. 
+**Galaxy integration** Provided by Southgreen & Andres Gwendoline (Institut Français de Bioinformatique) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Support** For any questions, please send an e-mail to support.abims@sb-roscoff.fr 
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
@@ -121,28 +121,6 @@
   | Convert VCF to Hapmap. Additionnaly it creates flanking sequences of variants if fasta reference is provided.
   | Furthermore it also creates fasta alignment of genes if GFF annotation is provided 
 
------------------
-Workflow position
------------------
-
-**Upstream tool**
-
-=============== ========================== =======
-Name            output file(s)             format 
-=============== ========================== =======
-VCFtools Filter VCF file		   VCF
-=============== ========================== =======
-
-
-**Downstream tool**
-
-=============== ========================== ===========
-Name            input file(s)              format 
-=============== ========================== ===========
-SNP density	Hapmap file 	 	   tabular
-=============== ========================== ===========
-
-
 ----------
 Input file
 ----------
@@ -237,7 +215,7 @@
 	TCCTCAAACTTTCTTCAGCGCCTATGAATACAGCGTGCTATAGTTACGTGGGGCGTTT
 
 	
-    </help>
+    ]]></help>
 
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
diff -r 98c37a5d67f4 -r c6640c49fd01 check_gwas_inputs/CheckGWASInputs.xml
--- a/check_gwas_inputs/CheckGWASInputs.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/check_gwas_inputs/CheckGWASInputs.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,5 +1,5 @@
-<tool id="check_GWAS_inputs" name="Check GWAS Inputs" version="1.1">
-	<description>checks concordance between input files for GWAS analysis</description>
+<tool id="check_GWAS_inputs" name="Check GWAS Inputs" version="2.0.0">
+	<description>Checks concordance between input files for GWAS analysis</description>
 
     <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work -->
     <requirements>
@@ -32,15 +32,12 @@
          <param name="hapmap" value="gwas-hapmap" />
          <param name="trait" value="gwas-trait" />
          <output name="out_hapmap" file="gwas-result.hapmap" />
-         <output name="out_trait" file="gwas-result.trait" />
+         <output name="out_trait" file="gwas-result.trait" compare="sim_size" delta="0"/>
          <output name="stats" file="gwas-result.stats" />
         </test>
     </tests>
-	<help>
+	<help><![CDATA[
 	
-        <![CDATA[
-
-
 .. class:: infomark
 
 **Authors** South Green
@@ -49,11 +46,14 @@
 
 .. class:: infomark
 
-**Galaxy integration** South Green.
+**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)
+
+.. class:: infomark
+
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-
 ===============
 CheckGWASInputs
 ===============
@@ -64,25 +64,9 @@
 
   | CheckGWASInputs checks concordance between input files for GWAS analysis.
 
-
------------------
-Workflow position
------------------
-
-**Upstream tool**
-
-=============== ====================== ===========
-Name            output file(s)         format 
-=============== ====================== ===========
-VCF to Hapmap   Hapmap file	       hapmap
-=============== ====================== ===========
-
-
-
-
-----------
-Input file
-----------
+-----------
+Input files
+-----------
 
 Hapmap file
 	Allelic file in Hapmap format
@@ -171,10 +155,7 @@
         Modified markers:
         Difference in variation: 0
 
-        ]]>
-
-	
-	</help>
+	]]></help>
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
     	<citation type="bibtex">@article{Dereeper03062015,
diff -r 98c37a5d67f4 -r c6640c49fd01 egglib/CalculateDiversityIndexes.xml
--- a/egglib/CalculateDiversityIndexes.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/egglib/CalculateDiversityIndexes.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,5 +1,11 @@
-<tool id="calculate_diversity" name="Diversity by gene" version="2.1.6">
-	<description>calculates various diversity indexes with EggLib.</description>
+<tool id="calculate_diversity" name="Diversity by gene" version="2.0.0">
+    <description>Calculates various diversity indexes with EggLib</description>
+    <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work -->
+    <requirements>
+        <requirement type="binary">perl</requirement>
+        <requirement type="package" version="1.6.924">perl-bioperl</requirement>
+        <requirement type="package" version="1.90b4">plink</requirement>
+    </requirements>
     <!-- [STRONGLY RECOMMANDED] Exit code rules -->
     <stdio>
         <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
@@ -21,33 +27,28 @@
         <!-- [HELP] Multiple tests can be defined with different parameters -->
         <test>
          <param name="input" value="egglib-alignment.fa" />
-         <output name="output" file="egglib-result.txt" />
+         <output name="output" file="egglib-result.txt" compare="sim_size" delta="0" />
         </test>
     </tests>
-	<help>
-	
-
+	<help><![CDATA[
 
 .. class:: infomark
 
-**Authors** EggLib_
+**Authors** EggLib : http://mycor.nancy.inra.fr/egglib/
 
-.. _EggLib: http://egglib.sourceforge.net/
-
-  | "EggLib: processing, analysis and simulation tools for population genetics and genomics.", **De Mita S. and M. Siol.**, BMC Genet. 2012. 13:27.
+  | **Please cite** "EggLib: processing, analysis and simulation tools for population genetics and genomics.", **De Mita S. and M. Siol.**, BMC Genet. 2012. 13:27.
+  | **Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
 
 .. class:: infomark
 
-**Galaxy integration** South Green.
+**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-
-
 ==================
 Diversity by genes
 ==================
@@ -57,24 +58,23 @@
 -----------
 
   | Provides various diversity indexes using EggLib library.
-  | For further informations, please visite the EggLib website_.
+  | For further informations, please visit the EggLib website_.
 
 .. _website: http://egglib.sourceforge.net/
 
-
------------------
-Workflow position
------------------
-
-**Upstream tool**
+------------
+Dependencies
+------------
+PLINK
+        plink_ 1.90b4, Conda version
+Bioperl
+        perl-bioperl_ 1.6.924, Conda version
+egglib
+        egglib_ 2.1.5, supplied with the wrapper
 
-=============== ====================== ===========
-Name            output file(s)         format 
-=============== ====================== ===========
-VCF to Hapmap   Fasta alignment        fasta
-=============== ====================== ===========
-
-
+.. _plink: https://anaconda.org/bioconda/plink
+.. _perl-bioperl: https://anaconda.org/bioconda/perl-bioperl
+.. _egglib: https://anaconda.org/bioconda/egglib
 
 ----------
 Input file
@@ -83,22 +83,15 @@
 Fasta file
 	Fasta alignment
 
-
-
 ------------
 Output files
 ------------
 
 Diversity
+        Diversity indexes
 
 Log file
-
-
-------------
-Dependencies
-------------
-EggLib 
-	version 2.1.5
+        Log file 
 
 ---------------------------------------------------
 
@@ -106,8 +99,8 @@
 Working example
 ---------------
 
-Input files
-===========
+Input file
+==========
 
 Fasta file
 ----------
@@ -143,8 +136,8 @@
 	GCTGGTTTTGCTCAGAGAGCGGGCGCGTGTTCGCCGCGGGTCTCAACGACTTCGGGCAGCTCGGGATAGGCTCCTCCGTGACTCATTCCCTGGTACTGAGCTTCTTGTACATCATGCCTCCA
 	TGTGAAATTTTCATCTACATTGTGAGCCAGCCTACTTTTACACAGTAAGCGAAAGCTGGCTGGACATATCAGAGTTGCAATGGGGATTGACCAAATCAATTCTGACTCCTGTTACATGTTGC
 
-Output files
-============
+Output file
+===========
 
 Diversity
 ---------
@@ -155,7 +148,7 @@
 	LOCOs11g09160;8;6577;6577;2;0.00011728;0.000130324;0.414213;2;0.428571;0.857143;0;1;
 
 
-	</help>
+	]]></help>
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
     	<citation type="bibtex">@article{Dereeper03062015,
diff -r 98c37a5d67f4 -r c6640c49fd01 hapmap2mlmm/HapmapToMLMMFiles.pl
--- a/hapmap2mlmm/HapmapToMLMMFiles.pl	Wed Feb 07 22:08:47 2018 -0500
+++ b/hapmap2mlmm/HapmapToMLMMFiles.pl	Mon Apr 16 09:00:24 2018 -0400
@@ -98,7 +98,7 @@
 }
 close($M);
 
-system("$TRANSPOSE_EXE geno_transposed >geno_transposed2");
+system("gawk -E $TRANSPOSE_EXE geno_transposed >geno_transposed2");
 
 open(my $F,">$geno");
 open(my $G,"geno_transposed2");
diff -r 98c37a5d67f4 -r c6640c49fd01 hapmap2mlmm/HapmapToMLMMFiles.xml
--- a/hapmap2mlmm/HapmapToMLMMFiles.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/hapmap2mlmm/HapmapToMLMMFiles.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,6 +1,9 @@
-<tool id="hapmap_to_mlmm_files" name="HapmapToMLMMFiles" version="1.1">
-    <description>converts a hapmap file into MLMM input files</description>
+<tool id="hapmap_to_mlmm_files" name="HapmapToMLMMFiles" version="2.0.0">
+    <description>Converts a hapmap file into MLMM input files</description>
     <!-- [STRONGLY RECOMMANDED] Exit code rules -->
+    <requirements>
+        <requirement type="package" version="4.1.3">gawk</requirement>
+    </requirements>
     <stdio>
         <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
         <exit_code range="1:" level="fatal" />
@@ -26,10 +29,7 @@
 	    <output name="genot" file="hapmap2mlmm-result_genot" />
         </test>
     </tests>
-	<help>
-	
-
-
+	<help><![CDATA[
 
 .. class:: infomark
 
@@ -39,11 +39,14 @@
 
 .. class:: infomark
 
-**Galaxy integration** South Green.
+**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)
+
+.. class:: infomark
+
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-
 =================
 HapmapToMLMMFiles
 =================
@@ -54,29 +57,13 @@
 
   | HapmapToMLMMFiles converts a hapmap file into input files compatible with the MLMM software.
 
-
------------------
-Workflow position
------------------
-
-**Upstream tool**
+------------
+Dependencies
+------------
+GAWK
+        gawk_ 4.1.3, Conda version
 
-=============== ====================== ===========
-Name            output file(s)         format 
-=============== ====================== ===========
-VCF to Hapmap   Fasta alignment        fasta
-=============== ====================== ===========
-
-
-**Downstream tool**
-
-=========== ========================== =======
-Name            input file(s)          format
-=========== ========================== =======
-MLMM                                        
-=========== ========================== =======
-
-
+.. _gawk: https://anaconda.org/bioconda/gawk
 
 ----------
 Input file
@@ -140,7 +127,7 @@
 	Ind2	0	0	0	0	0	2	2	0	0	0	0	0	0	0
 
 
-	</help>
+	]]></help>
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
     	<citation type="bibtex">@article{Dereeper03062015,
diff -r 98c37a5d67f4 -r c6640c49fd01 hapmap2mlmm/transpose.awk
--- a/hapmap2mlmm/transpose.awk	Wed Feb 07 22:08:47 2018 -0500
+++ b/hapmap2mlmm/transpose.awk	Mon Apr 16 09:00:24 2018 -0400
@@ -1,5 +1,3 @@
-#!/usr/bin/gawk -f
-
 BEGIN {
     max_x =0;
     max_y =0;
diff -r 98c37a5d67f4 -r c6640c49fd01 ped2bed/ped2bed.xml
--- a/ped2bed/ped2bed.xml	Wed Feb 07 22:08:47 2018 -0500
+++ b/ped2bed/ped2bed.xml	Mon Apr 16 09:00:24 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="ped2bed" name="plink: ped2bed" version="1.24">
+<tool id="ped2bed" name="PLINK: ped2bed" version="2.0.0">
 	<description>Convert ped to bed</description>
 	<requirements>
         	<requirement type="binary">perl</requirement>
@@ -35,30 +35,27 @@
          <output name="bim" file="ped2bed-result.bim" />
         </test>
     </tests>
-	<help>
+	<help><![CDATA[
 	
 
 .. class:: infomark
 
-**Authors** plink_
+Ped to Bed format conversion is done with PLINK.
+**Authors** PLINK: Shaun Purcell (https://www.cog-genomics.org/plink)
 
-.. _plink: http://pngu.mgh.harvard.edu/purcell/plink/
-
-  | "PLINK: a toolset for whole-genome association and population-based linkage analysis.", **Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ, Sham PC.**, American Journal of Human Genetics, 81, 2007.
+  | **Please cite** "PLINK: a toolset for whole-genome association and population-based linkage analysis.", **Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ, Sham PC.**, American Journal of Human Genetics, 81, 2007.
+  | **Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
 
 .. class:: infomark
 
-**Galaxy integration** South Green.
+**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)
 
 .. class:: infomark
 
-**Please cite** "SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations", **Dereeper A. et al.**, Nucl. Acids Res. (1 july 2015) 43 (W1).
-
+**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
 
 ---------------------------------------------------
 
-
-
 =======
 Ped2Bed
 =======
@@ -67,45 +64,31 @@
 Description
 -----------
 
+  | Ped to Bed format conversion is done with PLINK
   | PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
-  | For further informations, please visite the plink website_.
-
-.. _website: http://pngu.mgh.harvard.edu/purcell/plink/
-
+  | For further informations, please visit the PLINK website_.
 
------------------
-Workflow position
------------------
-
-**Upstream tool**
+.. _website: https://www.cog-genomics.org/plink
 
-=============== ========================== ===========
-Name            output file(s)             format 
-=============== ========================== ===========
-VCFtools filter PED and map files          ped and map
-=============== ========================== ===========
-
-
-**Downstream tool**
+------------
+Dependencies
+------------
+PLINK
+	plink_ 1.90b4, Conda version
+Bioperl
+        perl-bioperl_ 1.6.924, Conda version
 
-=========== ========================== =======
-Name            input file(s)          format
-=========== ========================== =======
-Admixture   Bed, fam and bim file      txt
-=========== ========================== =======
+.. _plink: https://anaconda.org/bioconda/plink
+.. _perl-bioperl: https://anaconda.org/bioconda/perl-bioperl
 
-
-----------
-Input file
-----------
+-----------
+Input files
+-----------
 
 PED file
-	Allelic file in PED format 
 
 MAP file
 
-
-
 ------------
 Output files
 ------------
@@ -117,14 +100,6 @@
 Bim file
 
 All logs 
-	Log file
-
-
-------------
-Dependencies
-------------
-plink 
-	version 1.07
 
 ---------------------------------------------------
 
@@ -181,7 +156,7 @@
 	0	Chr8:18058	0	18058	C	T
 
 
-	</help>
+	]]></help>
     <citations>
         <!-- [HELP] As DOI or BibTex entry -->
     	<citation type="bibtex">@article{Dereeper03062015,
diff -r 98c37a5d67f4 -r c6640c49fd01 test-data/MDSplot-output.mds_plot.txt
--- a/test-data/MDSplot-output.mds_plot.txt	Wed Feb 07 22:08:47 2018 -0500
+++ b/test-data/MDSplot-output.mds_plot.txt	Mon Apr 16 09:00:24 2018 -0400
@@ -1,93 +1,93 @@
-Pop1	IRAT112	-0.0969382	0.0376036
-Pop1	IAC25	-0.0918126	0.0501177
-Pop1	IAC165	-0.104815	0.0453876
-Pop1	KARASUKARASURANKASU	0.107782	-0.0683546
-Pop1	DOURADOPRECOCE	-0.0831697	0.0516412
-Pop1	CUIABANA	0.0327877	0.0497752
-Pop1	BICOBRANCO	-0.0554177	0.0501857
-Pop1	CAAWA/FORTUNA6	-0.052355	0.0170584
-Pop1	CANELADEFERRO	-0.0142283	0.0598394
-Pop1	CIRAD358	0.0497841	0.0645487
-Pop1	COLOMBIA1	-0.110347	-0.172742
-Pop1	CIRAD409	-0.113614	-0.105898
-Pop1	BAGANANASALAO	0.0247582	0.0186246
-Pop1	BAKUNGH	0.0199022	0.0613692
-Pop1	FOHISOMOTRA	0.0344309	0.0697592
-Pop1	KAKANI2	0.147713	-0.0780455
-Pop1	GUARANI	-0.0892761	0.0387007
-Pop1	DOURADOAGULHA	-0.0831373	0.0514523
-Pop1	IRAT13	-0.0757215	0.00312413
-Pop1	DAWASANRED	0.131309	-0.102364
-Pop1	GRAZI	0.0177091	0.0870472
-Pop1	IRAT144	0.0146443	0.0067734
-Pop1	IAC47	-0.0968934	0.0477667
-Pop1	MOROBEREKAN	0.0395544	0.0952695
-Pop1	IRAT362	-0.0921075	-0.00860852
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diff -r 98c37a5d67f4 -r c6640c49fd01 test-data/MDSplot-output.mds_plot.txt_old
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/MDSplot-output.mds_plot.txt_old	Mon Apr 16 09:00:24 2018 -0400
@@ -0,0 +1,93 @@
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diff -r 98c37a5d67f4 -r c6640c49fd01 test-data/annotationStatsFromVCF.effect
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotationStatsFromVCF.effect	Mon Apr 16 09:00:24 2018 -0400
@@ -0,0 +1,3 @@
+Intron	960	Intron:960
+UTR	281	UTR:281
+Exon	3248	Synonym:124	Non-syn:120
diff -r 98c37a5d67f4 -r c6640c49fd01 test-data/annotationStatsFromVCF.location
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotationStatsFromVCF.location	Mon Apr 16 09:00:24 2018 -0400
@@ -0,0 +1,2 @@
+Intergenic	466	Intergenic:466
+Genic	4489	Exon:3248	Intron:960	UTR:281
diff -r 98c37a5d67f4 -r c6640c49fd01 test-data/annotationStatsFromVCF.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotationStatsFromVCF.txt	Mon Apr 16 09:00:24 2018 -0400
@@ -0,0 +1,4 @@
+Chrom	Bin	dN/dS ratio
+chr1	50000	0.791666666666667
+chr1	100000	0.981132075471698
+chr1	150000	2.08333333333333
diff -r 98c37a5d67f4 -r c6640c49fd01 test-data/annotationStatsFromVCF.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotationStatsFromVCF.vcf	Mon Apr 16 09:00:24 2018 -0400
@@ -0,0 +1,5000 @@
+##fileformat=VCFv4.1
+##FILTER=<ID=LowQual,Description="Low quality">
+##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##GATKCommandLine=<ID=UnifiedGenotyper,Version=2.7-4-g6f46d11,Date="Fri Nov 01 16:17:42 CET 2013",Epoch=1383319062999,CommandLineOptions="analysis_type=UnifiedGenotyper input_file=[/scratch/hueber-35211/CATB1.RG.sorted.indelrealigned.bam] read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[BadCigar] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data/projects/coffee_snp/donnees_genomiques/pseudomolecules.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 allow_bqsr_on_reduced_bams_despite_repeated_warnings=false validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=4 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false version=false genotype_likelihoods_model=SNP pcr_error_rate=1.0E-4 computeSLOD=false annotateNDA=false pair_hmm_implementation=LOGLESS_CACHING min_base_quality_score=17 max_deletion_fraction=0.05 allSitePLs=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false output_mode=EMIT_VARIANTS_ONLY heterozygosity=0.001 indel_heterozygosity=1.25E-4 genotyping_mode=DISCOVERY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=6 input_prior=[] contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=EXACT_INDEPENDENT exactcallslog=null dbsnp=(RodBinding name= source=UNBOUND) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub onlyEmitSamples=[] debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
+##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
+##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
+##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
+##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
+##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
+##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
+##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
+##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
+##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
+##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
+##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
+##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)">
+##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)">
+##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
+##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat">
+##contig=<ID=chr1,length=38193400>
+##contig=<ID=chr10,length=27624748>
+##contig=<ID=chr11,length=33540656>
+##contig=<ID=chr2,length=54522928>
+##contig=<ID=chr3,length=32030951>
+##contig=<ID=chr4,length=28191985>
+##contig=<ID=chr5,length=29137935>
+##contig=<ID=chr6,length=37293965>
+##contig=<ID=chr7,length=29833120>
+##contig=<ID=chr8,length=31585744>
+##contig=<ID=chr9,length=22352177>
+##contig=<ID=chr0,length=205603396>
+##reference=file:///data/projects/coffee_snp/donnees_genomiques/pseudomolecules.fasta
+##SnpEffVersion="2.0.5d (build 2012-01-19), by Pablo Cingolani"
+##SnpEffCmd="SnpEff eff coffea /apps/www/sniplay.cirad.fr/data/Coffee/Argemo_genomic.nonannotated.vcf.2 -i VCF -o VCF -c snpEff.config "
+##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effefct_Impact | Functional_Class | Codon_Change | Amino_Acid_change | Gene_Name | Gene_BioType | Coding | Transcript | Exon [ | ERRORS | WARNINGS ] )' ">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	CATB1
+chr1	2209	.	G	T	213.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=30.55;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:18:242,18,0
+chr1	2232	.	A	C	11.83	LowQual	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=11.83;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,1:1:3:38,3,0
+chr1	2264	.	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=5;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.41;MQ0=0;MQRankSum=0.358;QD=13.75;ReadPosRankSum=-1.231;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:2,3:5:53:97,0,53
+chr1	2353	.	T	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.5027;MLEAC=1;MLEAF=0.500;MQ=31.07;MQ0=3;MQRankSum=0.261;QD=1.18;ReadPosRankSum=-1.081;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:19,7:26:59:59,0,409
+chr1	2482	.	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;DP=19;Dels=0.00;FS=5.229;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=7;MQRankSum=0.370;QD=10.94;ReadPosRankSum=-1.109;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:5,14:19:83:236,0,83
+chr1	2558	.	A	T	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;DP=45;Dels=0.00;FS=4.170;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=13;MQRankSum=0.121;QD=17.55;ReadPosRankSum=-0.072;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:13,32:45:99:818,0,101
+chr1	2925	.	A	T	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=5.7776;MLEAC=1;MLEAF=0.500;MQ=38.24;MQ0=1;MQRankSum=0.372;QD=17.59;ReadPosRankSum=-1.362;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:9,11:20:99:380,0,275
+chr1	2941	.	A	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.63;MQ0=1;MQRankSum=1.524;QD=14.78;ReadPosRankSum=0.663;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:7,8:15:99:250,0,227
+chr1	2985	.	T	C	73.28	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.19;MQ0=8;QD=6.66;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:7,4:11:9:101,9,0
+chr1	3705	.	G	T	103.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=0;QD=14.72;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:12:131,12,0
+chr1	3745	.	A	T	180.84	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=22.60;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,8:8:18:209,18,0
+chr1	3864	.	C	T	33.74	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.81;MQ0=4;QD=3.75;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:6:61,6,0
+chr1	3887	.	G	C	131.9	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.03;MQ0=5;QD=6.00;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,22:22:15:160,15,0
+chr1	3944	.	G	T	182.84	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.63;MQ0=5;QD=7.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:18:211,18,0
+chr1	4109	.	C	T	151.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;QD=21.70;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:15:180,15,0
+chr1	4438	.	T	C	90.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.849;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.69;MQ0=2;MQRankSum=2.700;QD=6.00;ReadPosRankSum=-2.855;EFF=DOWNSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:10,5:15:12:118,12,0
+chr1	4555	.	G	A	51.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=17.25;EFF=UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|),UTR_3_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:6:79,6,0
+chr1	4733	.	C	G	135.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=22.51;EFF=UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|),UTR_3_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:12:163,12,0
+chr1	4879	.	T	C	114.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=19.01;EFF=UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|),UTR_3_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:12:142,12,0
+chr1	4945	.	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DP=29;Dels=0.00;FS=3.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=1;MQRankSum=3.132;QD=11.10;ReadPosRankSum=3.363;EFF=UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|),UTR_3_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:14,15:29:43:350,0,43
+chr1	4947	.	C	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=1;MQRankSum=3.401;QD=11.64;ReadPosRankSum=3.360;EFF=UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|),UTR_3_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:16,15:31:40:389,0,40
+chr1	4961	.	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=25.65;MQ0=1;MQRankSum=-3.749;QD=0.99;ReadPosRankSum=-0.165;EFF=UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|),UTR_3_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:18,25:43:71:71,0,437
+chr1	4967	.	T	C	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;DP=41;Dels=0.00;FS=1.219;HaplotypeScore=1.3123;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=1;MQRankSum=4.072;QD=10.09;ReadPosRankSum=-0.897;EFF=UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|),UTR_3_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:25,16:41:70:442,0,70
+chr1	4981	.	A	C	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.8693;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=1;MQRankSum=3.500;QD=6.80;ReadPosRankSum=-1.759;EFF=UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|),UTR_3_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:25,11:36:88:273,0,88
+chr1	4987	.	T	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=13.8254;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=1;MQRankSum=-2.450;QD=1.66;ReadPosRankSum=1.983;EFF=UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|),UTR_3_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:21,15:36:88:88,0,296
+chr1	5059	.	C	G	146.84	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.14;MQ0=1;QD=18.35;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,8:8:18:175,18,0
+chr1	5110	.	A	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.75;MQ0=3;MQRankSum=-0.421;QD=4.51;ReadPosRankSum=-1.826;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:12,9:21:99:123,0,278
+chr1	5170	.	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=2;MQRankSum=0.212;QD=3.65;ReadPosRankSum=0.533;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:8,7:15:83:83,0,127
+chr1	5171	.	T	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=1;MQRankSum=0.212;QD=3.91;ReadPosRankSum=0.533;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:8,6:14:83:83,0,122
+chr1	5284	.	A	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.9827;MLEAC=1;MLEAF=0.500;MQ=34.72;MQ0=1;MQRankSum=-0.784;QD=3.49;ReadPosRankSum=-1.445;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:16,6:22:99:105,0,410
+chr1	5324	.	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.74;MQ0=3;MQRankSum=1.491;QD=10.44;ReadPosRankSum=-0.818;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:10,10:20:99:237,0,166
+chr1	5361	.	A	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=24.40;MQ0=2;MQRankSum=1.412;QD=11.41;ReadPosRankSum=0.688;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:9,14:24:44:302,0,44
+chr1	5557	.	A	G	298.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=5;QD=18.67;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:30:327,30,0
+chr1	5648	.	T	C	59.28	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.66;MQ0=3;QD=6.59;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:1,8:9:9:87,9,0
+chr1	5834	.	G	T	15.88	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=3.3843;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=1;MQRankSum=1.191;QD=0.93;ReadPosRankSum=0.714;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:15,2:17:44:44,0,279
+chr1	5889	.	T	G	147.1	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=21.23;MQ0=4;MQRankSum=-0.248;QD=8.17;ReadPosRankSum=-0.744;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:4,14:18:11:175,0,11
+chr1	5890	.	T	G	229.78	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=21.11;MQ0=4;QD=12.09;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:24:258,24,0
+chr1	5938	.	C	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.520;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.73;MQ0=10;MQRankSum=1.034;QD=3.08;ReadPosRankSum=0.597;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:15,6:21:69:93,0,69
+chr1	5968	.	A	T	115.9	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.07;MQ0=8;QD=7.24;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:15:144,15,0
+chr1	5974	.	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.51;MQ0=8;MQRankSum=0.296;QD=1.88;ReadPosRankSum=1.580;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:14,4:18:62:62,0,114
+chr1	6010	.	A	T	490.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;QD=21.34;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:45:519,45,0
+chr1	6041	.	T	A	311.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=14.85;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:33:340,33,0
+chr1	6209	.	A	G	273.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.61;MQ0=6;QD=13.04;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,20:21:30:302,30,0
+chr1	6350	.	T	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.20;MQ0=21;MQRankSum=1.670;QD=2.93;ReadPosRankSum=-0.085;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:163,0,206
+chr1	6426	.	T	C	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=2;MQRankSum=-1.099;QD=5.25;ReadPosRankSum=0.859;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:31,21:52:99:301,0,677
+chr1	6486	.	A	G	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=24.11;MQ0=16;MQRankSum=-0.330;QD=8.00;ReadPosRankSum=0.268;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:39,25:64:99:540,0,604
+chr1	6532	.	C	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DP=53;Dels=0.00;FS=4.619;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.32;MQ0=28;MQRankSum=0.087;QD=2.22;ReadPosRankSum=-0.379;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:35,18:53:99:146,0,419
+chr1	6577	.	G	A	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.35;MQ0=17;MQRankSum=-1.883;QD=6.11;ReadPosRankSum=0.269;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:8,25:33:28:230,0,28
+chr1	6607	.	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.9778;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=12;MQRankSum=-1.702;QD=2.28;ReadPosRankSum=0.321;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:22,17:39:99:117,0,385
+chr1	6609	.	G	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.9778;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=12;MQRankSum=0.904;QD=2.30;ReadPosRankSum=-0.204;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:32,7:39:99:118,0,377
+chr1	6675	.	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;DP=52;Dels=0.00;FS=8.076;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.45;MQ0=15;MQRankSum=-1.788;QD=1.13;ReadPosRankSum=-0.973;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:36,16:52:87:87,0,729
+chr1	6691	.	G	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;DP=49;Dels=0.00;FS=8.321;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=21.34;MQ0=17;MQRankSum=-0.467;QD=0.71;ReadPosRankSum=-0.311;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:36,13:49:63:63,0,703
+chr1	6725	.	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DP=26;Dels=0.00;FS=1.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.03;MQ0=9;MQRankSum=-0.927;QD=7.45;ReadPosRankSum=-0.146;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	0/1:13,13:26:99:222,0,183
+chr1	6752	.	T	C	113.9	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=6;QD=10.35;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00010|mRNA||GSCOCT00012439001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:15:142,15,0
+chr1	6942	.	G	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DP=21;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.08;MQ0=7;MQRankSum=0.267;QD=2.66;ReadPosRankSum=-1.067;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:14,7:21:84:84,0,137
+chr1	7107	.	C	T	262.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.07;MQ0=9;MQRankSum=1.189;QD=10.11;ReadPosRankSum=-1.302;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	1/1:7,19:26:6:290,6,0
+chr1	7384	.	T	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.91;MQ0=30;MQRankSum=0.259;QD=1.40;ReadPosRankSum=0.583;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:26,16:42:87:87,0,93
+chr1	8682	.	T	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.57;MQ0=23;MQRankSum=-1.898;QD=7.02;ReadPosRankSum=0.429;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:8,30:38:99:295,0,141
+chr1	8738	.	A	G	850.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=29;QD=15.75;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:72:879,72,0
+chr1	8785	.	C	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.27;MQ0=40;MQRankSum=-2.450;QD=1.48;ReadPosRankSum=1.668;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:22,28:50:99:102,0,173
+chr1	8936	.	C	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DP=47;Dels=0.00;FS=11.458;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.37;MQ0=14;MQRankSum=2.448;QD=5.61;ReadPosRankSum=1.430;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:35,12:47:99:292,0,700
+chr1	8946	.	A	G	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;DP=39;Dels=0.00;FS=15.108;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.14;MQ0=13;MQRankSum=1.417;QD=5.94;ReadPosRankSum=0.472;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:29,10:39:99:260,0,533
+chr1	9013	.	A	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;DP=33;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.84;MQ0=24;MQRankSum=0.729;QD=2.05;ReadPosRankSum=-0.361;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,9:33:96:96,0,100
+chr1	9080	.	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.47;MQ0=24;MQRankSum=-1.866;QD=1.82;ReadPosRankSum=0.633;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:20,13:34:90:90,0,190
+chr1	10305	.	A	G	786.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=10;QD=23.84;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:6,27:33:63:815,63,0
+chr1	10540	.	G	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DP=45;Dels=0.00;FS=17.175;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.78;MQ0=1;MQRankSum=-1.779;QD=6.82;ReadPosRankSum=2.279;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:32,13:45:99:335,0,1095
+chr1	10565	.	T	C	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;DP=49;Dels=0.00;FS=38.615;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.02;MQ0=2;MQRankSum=0.662;QD=20.57;ReadPosRankSum=-2.211;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:18,31:49:99:1036,0,420
+chr1	10997	.	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DP=59;Dels=0.00;FS=1.096;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=9;MQRankSum=0.204;QD=10.11;ReadPosRankSum=-0.961;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:30,29:59:99:625,0,593
+chr1	11025	.	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.25;MQ0=15;MQRankSum=-0.654;QD=4.94;ReadPosRankSum=1.721;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:37,20:57:99:310,0,779
+chr1	11026	.	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.25;MQ0=15;MQRankSum=-0.814;QD=4.84;ReadPosRankSum=1.694;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:37,20:57:99:304,0,778
+chr1	11155	.	G	T	882.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.9841;MLEAC=2;MLEAF=1.00;MQ=25.38;MQ0=8;QD=22.07;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:84:911,84,0
+chr1	11199	.	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;DP=54;Dels=0.00;FS=15.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.97;MQ0=5;MQRankSum=-2.335;QD=4.79;ReadPosRankSum=2.164;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:37,17:54:99:287,0,1004
+chr1	11255	.	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;DP=45;Dels=0.00;FS=8.137;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=44.39;MQ0=0;MQRankSum=-1.761;QD=1.79;ReadPosRankSum=-2.826;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:35,10:45:99:109,0,1164
+chr1	11591	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;DP=31;Dels=0.00;FS=8.096;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.67;MQ0=1;MQRankSum=-3.119;QD=4.96;ReadPosRankSum=-1.665;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,9:31:99:182,0,762
+chr1	11716	.	T	C	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;DP=25;Dels=0.00;FS=10.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.67;MQ0=0;MQRankSum=-0.962;QD=0.60;ReadPosRankSum=-2.049;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,3:25:43:43,0,741
+chr1	11719	.	A	G	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;DP=25;Dels=0.00;FS=10.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.67;MQ0=0;MQRankSum=-1.213;QD=0.48;ReadPosRankSum=-2.132;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,3:25:40:40,0,773
+chr1	11750	.	A	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;DP=39;Dels=0.00;FS=9.839;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.68;MQ0=1;MQRankSum=-4.052;QD=2.58;ReadPosRankSum=-2.335;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,10:39:99:129,0,976
+chr1	11773	.	T	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DP=49;Dels=0.00;FS=8.883;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=43.29;MQ0=1;MQRankSum=-5.316;QD=5.40;ReadPosRankSum=-0.400;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:33,16:49:99:293,0,1185
+chr1	11891	.	A	T	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=46.82;MQ0=0;MQRankSum=-3.709;QD=8.61;ReadPosRankSum=-0.055;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,18:47:99:433,0,1013
+chr1	11902	.	A	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;DP=42;Dels=0.00;FS=1.270;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=46.98;MQ0=0;MQRankSum=-3.019;QD=7.21;ReadPosRankSum=-0.525;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,15:42:99:331,0,973
+chr1	11906	.	C	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;DP=41;Dels=0.00;FS=2.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.51;MQ0=0;MQRankSum=-2.883;QD=7.41;ReadPosRankSum=-1.096;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:26,15:41:99:332,0,920
+chr1	11911	.	C	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DP=38;Dels=0.00;FS=3.279;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.65;MQ0=0;MQRankSum=-2.124;QD=4.81;ReadPosRankSum=0.193;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,11:38:99:211,0,908
+chr1	11921	.	A	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;DP=38;Dels=0.00;FS=5.870;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.80;MQ0=0;MQRankSum=-1.608;QD=3.52;ReadPosRankSum=0.348;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:28,10:38:99:162,0,926
+chr1	11929	.	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;DP=36;Dels=0.00;FS=9.839;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.95;MQ0=0;MQRankSum=-1.465;QD=3.13;ReadPosRankSum=-0.171;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:28,8:36:99:141,0,932
+chr1	11994	.	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.393;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=38.03;MQ0=3;MQRankSum=-1.960;QD=1.98;ReadPosRankSum=0.635;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:38,12:50:99:127,0,1191
+chr1	12008	.	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=38.65;MQ0=3;MQRankSum=-3.004;QD=4.01;ReadPosRankSum=0.628;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:41,17:59:99:265,0,1308
+chr1	12023	.	A	G	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DP=68;Dels=0.00;FS=3.645;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=41.63;MQ0=3;MQRankSum=-1.795;QD=7.56;ReadPosRankSum=-1.088;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:43,25:68:99:542,0,1441
+chr1	12050	.	G	C	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;DP=68;Dels=0.00;FS=5.033;HaplotypeScore=2.9268;MLEAC=1;MLEAF=0.500;MQ=45.50;MQ0=3;MQRankSum=-1.538;QD=11.88;ReadPosRankSum=-0.672;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:38,30:68:99:836,0,1326
+chr1	12090	.	A	G	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;DP=57;Dels=0.00;FS=2.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.95;MQ0=0;MQRankSum=-4.892;QD=15.59;ReadPosRankSum=1.141;EFF=INTRON(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,28:57:99:917,0,995
+chr1	12162	.	A	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;DP=34;Dels=0.00;FS=3.329;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=48.98;MQ0=2;MQRankSum=-4.602;QD=6.88;ReadPosRankSum=-0.119;EFF=UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431)	GT:AD:DP:GQ:PL	0/1:21,13:34:99:262,0,708
+chr1	12186	.	G	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;DP=38;Dels=0.00;FS=3.305;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.59;MQ0=2;MQRankSum=-3.949;QD=6.10;ReadPosRankSum=-1.854;EFF=UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431)	GT:AD:DP:GQ:PL	0/1:25,13:38:99:260,0,884
+chr1	12195	.	C	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;DP=39;Dels=0.00;FS=1.488;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.51;MQ0=2;MQRankSum=-3.882;QD=4.64;ReadPosRankSum=-1.898;EFF=START_GAINED(LOW||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,12:39:99:209,0,927
+chr1	12249	.	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;DP=56;Dels=0.00;FS=2.386;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=50.19;MQ0=0;MQRankSum=-5.596;QD=11.75;ReadPosRankSum=2.865;EFF=START_GAINED(LOW||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:33,23:56:99:686,0,1109
+chr1	12250	.	C	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;DP=56;Dels=0.00;FS=2.386;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=50.01;MQ0=0;MQRankSum=-5.563;QD=11.66;ReadPosRankSum=2.848;EFF=UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431)	GT:AD:DP:GQ:PL	0/1:33,23:56:99:681,0,1094
+chr1	12252	.	T	C	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;DP=55;Dels=0.00;FS=2.426;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=50.00;MQ0=0;MQRankSum=-5.486;QD=12.00;ReadPosRankSum=2.722;EFF=START_GAINED(LOW||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:32,23:55:99:688,0,1075
+chr1	12271	.	A	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;DP=47;Dels=0.00;FS=2.731;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.00;MQ0=0;MQRankSum=-5.395;QD=10.19;ReadPosRankSum=0.908;EFF=UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431)	GT:AD:DP:GQ:PL	0/1:29,18:47:99:507,0,1022
+chr1	12273	.	A	G	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DP=47;Dels=0.00;FS=2.731;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.00;MQ0=0;MQRankSum=-5.395;QD=10.00;ReadPosRankSum=0.711;EFF=START_GAINED(LOW||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,18:47:99:498,0,1029
+chr1	12283	.	T	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;DP=45;Dels=0.00;FS=6.601;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=0;MQRankSum=-4.612;QD=8.97;ReadPosRankSum=-0.178;EFF=UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431)	GT:AD:DP:GQ:PL	0/1:29,16:45:99:432,0,953
+chr1	12293	.	G	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DP=43;Dels=0.00;FS=13.073;HaplotypeScore=1.8216;MLEAC=1;MLEAF=0.500;MQ=48.44;MQ0=0;MQRankSum=-4.370;QD=9.81;ReadPosRankSum=-2.000;EFF=UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|Exon_chr1_12138_12431)	GT:AD:DP:GQ:PL	0/1:28,15:43:99:450,0,932
+chr1	12432	.	C	T	860.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=31.88;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:72:889,72,0
+chr1	12461	.	A	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;DP=31;Dels=0.00;FS=6.929;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=43.06;MQ0=0;MQRankSum=-3.047;QD=3.44;ReadPosRankSum=2.099;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:23,8:31:99:135,0,662
+chr1	12610	.	A	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;DP=16;Dels=0.00;FS=2.796;HaplotypeScore=10.5708;MLEAC=1;MLEAF=0.500;MQ=55.68;MQ0=1;MQRankSum=1.371;QD=2.99;ReadPosRankSum=-2.526;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:13,3:16:76:76,0,324
+chr1	12640	.	T	G	605.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=1;QD=30.29;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:51:634,51,0
+chr1	12680	.	A	T	555.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=1;QD=32.69;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:42:584,42,0
+chr1	12768	.	A	C	859.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=32.48;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:888,69,0
+chr1	12883	.	G	A	787.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=29.11;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:816,60,0
+chr1	12886	.	G	A	784.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=27.81;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:813,60,0
+chr1	12926	.	T	C	761.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=28.06;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:790,60,0
+chr1	12964	.	G	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;DP=38;Dels=0.00;FS=15.239;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.94;MQ0=0;MQRankSum=-3.703;QD=1.41;ReadPosRankSum=1.421;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:32,6:38:82:82,0,1161
+chr1	12993	.	G	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;DP=43;Dels=0.00;FS=25.224;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=52.59;MQ0=0;MQRankSum=-4.523;QD=5.20;ReadPosRankSum=-0.543;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:32,11:43:99:252,0,1151
+chr1	12994	.	A	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;DP=43;Dels=0.00;FS=21.598;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=52.59;MQ0=0;MQRankSum=-4.528;QD=4.25;ReadPosRankSum=-1.193;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:33,10:43:99:211,0,1187
+chr1	13041	.	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;DP=33;Dels=0.00;FS=12.234;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=-3.337;QD=2.66;ReadPosRankSum=2.310;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,6:33:99:116,0,945
+chr1	13045	.	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DP=32;Dels=0.00;FS=12.127;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.52;MQ0=0;MQRankSum=-3.307;QD=2.77;ReadPosRankSum=2.148;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:26,6:32:99:117,0,908
+chr1	13074	.	C	T	821.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.270;DP=27;Dels=0.00;FS=3.388;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;MQRankSum=2.122;QD=30.44;ReadPosRankSum=0.424;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:3,24:27:32:850,32,0
+chr1	13123	.	T	A	1348.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;QD=34.58;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1377,102,0
+chr1	13136	.	C	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DP=41;Dels=0.00;FS=14.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.46;MQ0=0;MQRankSum=-1.074;QD=4.43;ReadPosRankSum=3.016;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:30,11:41:99:210,0,1033
+chr1	13137	.	C	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;DP=42;Dels=0.00;FS=14.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.95;MQ0=0;MQRankSum=0.715;QD=24.21;ReadPosRankSum=-3.118;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:11,31:42:99:1045,0,215
+chr1	13270	.	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=3;QD=34.96;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:81:1077,81,0
+chr1	13273	.	A	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DP=30;Dels=0.00;FS=2.876;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.55;MQ0=3;MQRankSum=-3.741;QD=9.36;ReadPosRankSum=-1.280;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:20,10:30:99:309,0,598
+chr1	13280	.	C	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;DP=28;Dels=0.00;FS=2.840;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.14;MQ0=2;MQRankSum=-3.610;QD=8.85;ReadPosRankSum=-1.080;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:18,10:28:99:276,0,564
+chr1	13292	.	C	T	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DP=29;Dels=0.00;FS=5.630;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.02;MQ0=2;MQRankSum=-3.138;QD=10.03;ReadPosRankSum=-0.276;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:19,10:29:99:319,0,601
+chr1	13308	.	T	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;DP=29;Dels=0.00;FS=2.733;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.10;MQ0=1;MQRankSum=-3.380;QD=9.68;ReadPosRankSum=3.332;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:19,10:29:99:309,0,644
+chr1	13344	.	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DP=19;Dels=0.00;FS=23.096;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.08;MQ0=1;MQRankSum=-0.592;QD=1.94;ReadPosRankSum=-1.303;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:16,3:19:65:65,0,546
+chr1	13347	.	A	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.846;DP=21;Dels=0.00;FS=37.433;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.82;MQ0=1;MQRankSum=1.196;QD=5.47;ReadPosRankSum=-2.268;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:15,6:21:99:143,0,499
+chr1	13363	.	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;DP=17;Dels=0.00;FS=33.858;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.13;MQ0=0;MQRankSum=0.818;QD=13.87;ReadPosRankSum=0.337;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:9,8:17:99:264,0,308
+chr1	13378	.	C	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=13;Dels=0.00;FS=19.956;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=50.71;MQ0=0;MQRankSum=0.529;QD=15.29;ReadPosRankSum=1.461;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:5,7:13:99:227,0,159
+chr1	13390	.	T	C	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=13;Dels=0.00;FS=21.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.47;MQ0=0;MQRankSum=-0.212;QD=17.52;ReadPosRankSum=2.927;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:5,8:13:99:256,0,126
+chr1	13403	.	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DP=10;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.94;MQ0=0;MQRankSum=-1.580;QD=21.18;ReadPosRankSum=2.166;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:3,7:10:88:240,0,88
+chr1	13404	.	T	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=10;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.94;MQ0=0;MQRankSum=0.895;QD=5.78;ReadPosRankSum=-2.166;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:7,3:10:86:86,0,217
+chr1	13405	.	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=10;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.94;MQ0=0;MQRankSum=1.580;QD=5.78;ReadPosRankSum=-2.166;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:7,3:10:86:86,0,244
+chr1	13407	.	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DP=10;Dels=0.00;FS=19.243;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.94;MQ0=0;MQRankSum=1.580;QD=5.48;ReadPosRankSum=-2.166;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:7,3:10:83:83,0,214
+chr1	13424	.	C	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;DP=7;Dels=0.00;FS=15.441;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=54.99;MQ0=0;MQRankSum=-1.754;QD=13.25;ReadPosRankSum=-0.550;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:3,4:7:90:121,0,90
+chr1	13484	.	T	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=11;Dels=0.00;FS=6.264;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.36;MQ0=0;MQRankSum=-2.228;QD=9.07;ReadPosRankSum=-1.398;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:7,4:11:99:128,0,245
+chr1	13514	.	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.45;MQ0=0;MQRankSum=-2.546;QD=7.67;ReadPosRankSum=1.312;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:9,4:13:99:128,0,321
+chr1	13526	.	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.45;MQ0=0;MQRankSum=-2.546;QD=7.91;ReadPosRankSum=0.077;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:9,4:13:99:131,0,293
+chr1	13529	.	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.45;MQ0=0;MQRankSum=-2.546;QD=7.60;ReadPosRankSum=0.077;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:9,4:13:99:127,0,261
+chr1	13533	.	A	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=51.45;MQ0=0;MQRankSum=-2.546;QD=7.60;ReadPosRankSum=-0.849;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:9,4:13:99:127,0,316
+chr1	13543	.	G	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;DP=13;Dels=0.00;FS=16.782;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=54.07;MQ0=0;MQRankSum=0.377;QD=13.06;ReadPosRankSum=-2.777;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:7,6:13:99:198,0,209
+chr1	13601	.	C	T	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.355;DP=33;Dels=0.00;FS=6.893;HaplotypeScore=2.5316;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=0;MQRankSum=-0.954;QD=18.30;ReadPosRankSum=1.732;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:12,20:33:99:632,0,392
+chr1	13654	.	T	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;DP=32;Dels=0.00;FS=2.000;HaplotypeScore=17.2143;MLEAC=1;MLEAF=0.500;MQ=44.78;MQ0=0;MQRankSum=-3.367;QD=6.71;ReadPosRankSum=0.876;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:20,12:32:99:243,0,696
+chr1	13805	.	C	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=1.000;QD=13.95;ReadPosRankSum=1.081;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:28,21:49:99:712,0,955
+chr1	13962	.	A	T	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DP=56;Dels=0.00;FS=1.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.041;QD=15.07;ReadPosRankSum=0.567;EFF=UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|),UPSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:30,26:56:99:872,0,1029
+chr1	14025	.	A	G	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5620;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=0.490;QD=19.14;ReadPosRankSum=0.702;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:24,36:61:99:1196,0,669
+chr1	14039	.	C	T	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;DP=61;Dels=0.00;FS=1.002;HaplotypeScore=2.6609;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=0.839;QD=12.82;ReadPosRankSum=-1.116;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:35,26:61:99:810,0,1140
+chr1	14053	.	A	G	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;DP=61;Dels=0.00;FS=3.495;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=1.107;QD=16.44;ReadPosRankSum=1.469;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:28,33:61:99:1031,0,874
+chr1	14525	.	C	T	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;DP=57;Dels=0.00;FS=7.529;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=-0.041;QD=20.52;ReadPosRankSum=0.447;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:23,34:57:99:1198,0,732
+chr1	14531	.	A	G	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DP=54;Dels=0.00;FS=7.625;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=-0.153;QD=19.09;ReadPosRankSum=0.045;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:22,31:54:99:1059,0,726
+chr1	14540	.	C	T	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;DP=56;Dels=0.00;FS=9.774;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=-0.899;QD=19.82;ReadPosRankSum=-0.716;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:23,33:56:99:1138,0,754
+chr1	14569	.	T	C	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=57;Dels=0.00;FS=3.724;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.646;QD=16.28;ReadPosRankSum=0.519;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:28,29:57:99:956,0,955
+chr1	14614	.	T	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=-0.395;QD=17.88;ReadPosRankSum=-0.174;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:24,28:52:99:958,0,770
+chr1	14674	.	G	T	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=3.828;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=1.419;QD=17.11;ReadPosRankSum=1.228;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:27,27:54:99:952,0,875
+chr1	14720	.	C	A	2453.77	.	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=32.86;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2482,187,0
+chr1	14957	.	C	T	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;DP=43;Dels=0.00;FS=2.756;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.60;MQ0=1;MQRankSum=-0.253;QD=16.99;ReadPosRankSum=-0.758;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:20,23:43:99:759,0,646
+chr1	15110	.	T	A	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=65;Dels=0.00;FS=0.970;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-0.569;QD=12.66;ReadPosRankSum=0.261;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:39,26:65:99:851,0,1349
+chr1	15135	.	A	G	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-0.364;QD=16.04;ReadPosRankSum=-1.767;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:32,31:63:99:1039,0,1093
+chr1	15338	.	C	T	1812.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=1;QD=24.29;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1841,138,0
+chr1	15597	.	C	A	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;DP=47;Dels=0.00;FS=6.639;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-0.617;QD=9.89;ReadPosRankSum=-0.797;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:31,16:47:99:493,0,1065
+chr1	15875	.	A	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;DP=42;Dels=0.00;FS=1.222;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=1;MQRankSum=-0.066;QD=12.90;ReadPosRankSum=1.064;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:23,19:42:99:570,0,798
+chr1	15977	.	A	T	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.672;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=53.37;MQ0=3;MQRankSum=-3.958;QD=12.64;ReadPosRankSum=-1.385;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:24,32:56:99:736,0,832
+chr1	16014	.	C	G	2424.77	.	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.8438;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=3;QD=33.68;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	1/1:0,69:72:99:2453,187,0
+chr1	16017	.	T	G	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;DP=72;Dels=0.00;FS=1.018;HaplotypeScore=11.7597;MLEAC=1;MLEAF=0.500;MQ=52.21;MQ0=3;MQRankSum=-3.104;QD=11.80;ReadPosRankSum=-0.109;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:36,28:72:99:878,0,1143
+chr1	16621	.	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DP=65;Dels=0.00;FS=3.448;HaplotypeScore=2.7337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.323;QD=18.41;ReadPosRankSum=-1.247;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:29,36:65:99:1225,0,946
+chr1	16671	.	C	T	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DP=52;Dels=0.00;FS=2.477;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-0.746;QD=19.80;ReadPosRankSum=0.075;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:21,31:52:99:1058,0,684
+chr1	16700	.	C	G	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=1.092;QD=18.80;ReadPosRankSum=-0.912;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:18,28:46:99:893,0,570
+chr1	16782	.	C	T	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9279;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=1.342;QD=17.69;ReadPosRankSum=-0.791;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:30,33:63:99:1143,0,988
+chr1	16844	.	C	A	2131.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.55;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2160,160,0
+chr1	16871	.	T	C	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DP=59;Dels=0.00;FS=5.468;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=0.494;QD=14.76;ReadPosRankSum=-0.373;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:32,27:59:99:899,0,1075
+chr1	16912	.	T	A	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;DP=51;Dels=0.00;FS=7.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.556;QD=15.86;ReadPosRankSum=-1.724;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:26,25:51:99:837,0,878
+chr1	16926	.	A	G	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;DP=48;Dels=0.00;FS=6.044;HaplotypeScore=2.7745;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=0;MQRankSum=0.042;QD=14.35;ReadPosRankSum=-0.249;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:27,21:48:99:717,0,884
+chr1	17027	.	T	C	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;DP=65;Dels=0.00;FS=4.856;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.944;QD=14.46;ReadPosRankSum=-0.495;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:36,29:65:99:968,0,1247
+chr1	17241	.	C	G	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=0.811;QD=17.86;ReadPosRankSum=-0.258;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tCt/tGt|S190C|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_17170_17247),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:25,28:53:99:975,0,797
+chr1	17324	.	T	G	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.432;QD=18.63;ReadPosRankSum=0.875;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00020|mRNA||GSCOCT00012438001|)	GT:AD:DP:GQ:PL	0/1:20,26:46:99:885,0,675
+chr1	17567	.	C	T	1999.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.64;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2028,153,0
+chr1	17672	.	A	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DP=37;Dels=0.00;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.326;QD=14.24;ReadPosRankSum=1.143;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:20,17:37:99:555,0,636
+chr1	17713	.	A	T	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DP=51;Dels=0.00;FS=2.418;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.991;QD=15.64;ReadPosRankSum=-0.519;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,24:51:99:826,0,870
+chr1	17738	.	G	A	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;DP=56;Dels=0.00;FS=2.356;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.952;QD=12.19;ReadPosRankSum=0.820;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:32,24:56:99:711,0,1047
+chr1	17873	.	G	C	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-0.910;QD=21.06;ReadPosRankSum=0.728;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:17,29:46:99:997,0,530
+chr1	17905	.	A	G	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=57;Dels=0.00;FS=2.243;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=0.659;QD=19.52;ReadPosRankSum=0.773;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:23,34:57:99:1141,0,733
+chr1	18041	.	A	G	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;DP=57;Dels=0.00;FS=2.316;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=1.610;QD=18.47;ReadPosRankSum=-0.569;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Atc/Gtc|I221V|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_18036_18114)	GT:AD:DP:GQ:PL	0/1:26,31:57:99:1081,0,804
+chr1	18164	.	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=0.433;QD=11.99;ReadPosRankSum=-0.972;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:28,17:45:99:568,0,952
+chr1	18166	.	T	C	1777.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=28.69;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1806,135,0
+chr1	18454	.	C	T	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;DP=45;Dels=0.00;FS=1.130;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=0;MQRankSum=0.329;QD=16.22;ReadPosRankSum=0.102;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCg/aTg|T314M|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_18248_18565)	GT:AD:DP:GQ:PL	0/1:22,23:45:99:758,0,703
+chr1	18478	.	T	C	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=1.364;QD=13.59;ReadPosRankSum=1.242;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTa/cCa|L322P|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_18248_18565)	GT:AD:DP:GQ:PL	0/1:21,16:37:99:531,0,711
+chr1	18624	.	T	A	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;DP=47;Dels=0.00;FS=4.335;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=-0.140;QD=13.06;ReadPosRankSum=1.194;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,20:47:99:642,0,913
+chr1	19081	.	C	T	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.091;QD=22.92;ReadPosRankSum=-0.051;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcC/gcT|A390|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_19027_19309)	GT:AD:DP:GQ:PL	0/1:16,35:51:99:1197,0,486
+chr1	19138	.	T	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;DP=58;Dels=0.00;FS=5.223;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.717;QD=14.88;ReadPosRankSum=-0.655;EFF=SYNONYMOUS_CODING(LOW|SILENT|taT/taC|Y409|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_19027_19309)	GT:AD:DP:GQ:PL	0/1:31,27:58:99:891,0,1083
+chr1	19465	.	T	C	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.467;QD=16.00;ReadPosRankSum=-0.205;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:28,28:56:99:924,0,944
+chr1	19863	.	T	G	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.2772;MLEAC=1;MLEAF=0.500;MQ=60.50;MQ0=0;MQRankSum=-0.350;QD=8.83;ReadPosRankSum=-0.868;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,14:43:99:408,0,1042
+chr1	20158	.	T	C	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7886;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=0.686;QD=16.39;ReadPosRankSum=-0.668;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:25,28:53:99:897,0,842
+chr1	20454	.	T	C	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=-1.324;QD=15.62;ReadPosRankSum=0.255;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:21,22:43:99:700,0,709
+chr1	20566	.	G	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;DP=35;Dels=0.00;FS=3.009;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=-1.275;QD=14.34;ReadPosRankSum=-2.633;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:19,16:35:99:530,0,669
+chr1	20614	.	T	C	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;DP=47;Dels=0.00;FS=1.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=-0.223;QD=15.59;ReadPosRankSum=1.394;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,23:47:99:761,0,807
+chr1	20629	.	A	G	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.400;DP=45;Dels=0.00;FS=1.143;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.830;QD=15.64;ReadPosRankSum=2.446;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,21:45:99:732,0,822
+chr1	20630	.	A	C	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;DP=43;Dels=0.00;FS=2.649;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.984;QD=16.60;ReadPosRankSum=1.956;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:742,0,712
+chr1	20726	.	T	G	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DP=40;Dels=0.00;FS=1.408;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=1;MQRankSum=0.190;QD=10.77;ReadPosRankSum=0.512;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:25,15:40:99:459,0,906
+chr1	20954	.	G	T	1159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=1.566;QD=14.14;ReadPosRankSum=1.500;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:45,37:82:99:1188,0,1568
+chr1	21221	.	G	A	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.356;QD=18.35;ReadPosRankSum=0.853;EFF=SYNONYMOUS_CODING(LOW|SILENT|ttG/ttA|L545|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_20985_21233)	GT:AD:DP:GQ:PL	0/1:24,32:56:99:1056,0,780
+chr1	21683	.	C	T	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DP=55;Dels=0.00;FS=3.786;HaplotypeScore=2.9971;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=0.586;QD=14.07;ReadPosRankSum=-0.823;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:31,24:55:99:802,0,1087
+chr1	21687	.	C	T	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;DP=55;Dels=0.00;FS=1.070;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-0.182;QD=20.14;ReadPosRankSum=-0.026;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:21,34:55:99:1136,0,682
+chr1	21744	.	A	G	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;DP=57;Dels=0.00;FS=1.029;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=1.188;QD=16.73;ReadPosRankSum=-0.090;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:28,28:57:99:982,0,944
+chr1	21947	.	T	G	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=0.907;QD=12.46;ReadPosRankSum=-0.326;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:32,22:54:99:701,0,1131
+chr1	22299	.	T	C	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;DP=48;Dels=0.00;FS=6.116;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.826;QD=19.77;ReadPosRankSum=0.324;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcT/gcC|A649|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_22000_23367)	GT:AD:DP:GQ:PL	0/1:20,28:48:99:977,0,660
+chr1	22327	.	T	G	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DP=45;Dels=0.00;FS=4.865;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.767;QD=21.53;ReadPosRankSum=-0.059;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tct/Gct|S659A|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_22000_23367)	GT:AD:DP:GQ:PL	0/1:17,28:45:99:997,0,550
+chr1	23334	.	T	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=39;Dels=0.00;FS=2.875;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=0.928;QD=12.87;ReadPosRankSum=-0.871;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcT/gcG|A994|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_22000_23367)	GT:AD:DP:GQ:PL	0/1:23,16:39:99:530,0,737
+chr1	23394	.	A	T	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DP=52;Dels=0.00;FS=2.388;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQ0=0;MQRankSum=1.410;QD=16.90;ReadPosRankSum=0.531;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:25,27:52:99:907,0,841
+chr1	23447	.	T	A	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;DP=47;Dels=0.00;FS=1.119;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-0.054;QD=16.36;ReadPosRankSum=0.484;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:20,27:47:99:797,0,690
+chr1	23455	.	T	G	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.768;DP=47;Dels=0.00;FS=2.552;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=0.646;QD=18.46;ReadPosRankSum=-0.821;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:18,29:47:99:896,0,614
+chr1	23515	.	G	A,T	1409.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.35;MQ0=0;QD=32.03;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/2:0,23,21:44:99:1623,749,680,874,0,814
+chr1	23725	.	G	A	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DP=42;Dels=0.00;FS=6.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.428;QD=16.80;ReadPosRankSum=1.384;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:734,0,720
+chr1	23982	.	C	T	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;DP=55;Dels=0.00;FS=2.640;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-1.005;QD=19.45;ReadPosRankSum=0.885;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,33:55:99:1098,0,682
+chr1	24069	.	T	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;DP=48;Dels=0.00;FS=8.862;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=1;MQRankSum=0.330;QD=15.50;ReadPosRankSum=0.713;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:23,25:48:99:772,0,789
+chr1	24151	.	A	G	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=1;MQRankSum=0.785;QD=17.06;ReadPosRankSum=1.854;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcA/gcG|A1021|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_24104_24302)	GT:AD:DP:GQ:PL	0/1:21,25:46:99:813,0,677
+chr1	24389	.	C	A	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DP=48;Dels=0.00;FS=6.267;HaplotypeScore=27.9952;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=1;MQRankSum=0.567;QD=17.52;ReadPosRankSum=-0.546;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,26:48:99:869,0,711
+chr1	24436	.	T	C	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=1;MQRankSum=-1.964;QD=18.33;ReadPosRankSum=-0.577;EFF=SYNONYMOUS_CODING(LOW|SILENT|agT/agC|S1080|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_24411_24543)	GT:AD:DP:GQ:PL	0/1:23,28:51:99:963,0,687
+chr1	24548	.	G	A	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;DP=46;Dels=0.00;FS=6.474;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=1.411;QD=21.39;ReadPosRankSum=1.479;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:17,29:46:99:1012,0,541
+chr1	24661	.	C	G	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9945;MLEAC=1;MLEAF=0.500;MQ=58.34;MQ0=0;MQRankSum=-1.176;QD=13.44;ReadPosRankSum=1.960;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:687,0,875
+chr1	24708	.	A	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;DP=43;Dels=0.00;FS=1.164;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=57.71;MQ0=0;MQRankSum=-1.588;QD=11.79;ReadPosRankSum=-0.529;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:25,18:43:99:535,0,872
+chr1	24751	.	C	T	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;DP=50;Dels=0.00;FS=8.018;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-1.278;QD=12.94;ReadPosRankSum=-1.022;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,21:50:99:675,0,1009
+chr1	24820	.	T	A	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.600;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.461;QD=18.66;ReadPosRankSum=1.129;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,33:60:99:1148,0,824
+chr1	24862	.	T	C	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;DP=51;Dels=0.00;FS=13.641;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.789;QD=13.52;ReadPosRankSum=-0.238;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,22:51:99:718,0,995
+chr1	24930	.	T	C	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DP=52;Dels=0.00;FS=27.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.560;QD=15.23;ReadPosRankSum=0.248;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:28,24:52:99:820,0,960
+chr1	25113	.	T	A	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;DP=40;Dels=0.00;FS=16.130;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=-0.639;QD=18.64;ReadPosRankSum=1.998;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:18,22:40:99:774,0,623
+chr1	25137	.	G	A	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;DP=36;Dels=0.00;FS=9.728;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=0.665;QD=17.66;ReadPosRankSum=-0.317;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:17,19:36:99:664,0,574
+chr1	25267	.	A	G	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;DP=44;Dels=0.00;FS=1.192;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.877;QD=18.93;ReadPosRankSum=-2.014;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:19,25:44:99:861,0,649
+chr1	25375	.	A	G	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8311;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=1.084;QD=16.13;ReadPosRankSum=0.311;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:30,29:59:99:980,0,985
+chr1	25379	.	A	G	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.8311;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=0.716;QD=17.74;ReadPosRankSum=0.093;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:26,29:55:99:1004,0,818
+chr1	25601	.	A	G	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;DP=59;Dels=0.00;FS=7.277;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.584;QD=16.39;ReadPosRankSum=1.281;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:30,29:59:99:995,0,972
+chr1	25654	.	G	T	2337.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2366,175,0
+chr1	25678	.	T	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.915;DP=47;Dels=0.00;FS=2.654;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.653;QD=11.34;ReadPosRankSum=0.875;EFF=SYNONYMOUS_CODING(LOW|SILENT|acT/acC|T1175|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_25668_25963)	GT:AD:DP:GQ:PL	0/1:30,17:47:99:561,0,1005
+chr1	25747	.	G	A	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;DP=43;Dels=0.00;FS=7.186;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=0.246;QD=9.48;ReadPosRankSum=1.361;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcG/tcA|S1198|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_25668_25963)	GT:AD:DP:GQ:PL	0/1:29,14:43:99:436,0,1051
+chr1	25763	.	G	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;DP=44;Dels=0.00;FS=9.359;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=0.817;QD=10.97;ReadPosRankSum=-1.570;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gta/Cta|V1204L|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_25668_25963)	GT:AD:DP:GQ:PL	0/1:27,16:44:99:511,0,956
+chr1	26086	.	G	T	2202.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.4093;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.67;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2231,169,0
+chr1	26087	.	A	G	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=54;Dels=0.00;FS=1.059;HaplotypeScore=2.6207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.099;QD=17.55;ReadPosRankSum=1.238;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:26,28:54:99:976,0,871
+chr1	26119	.	G	T	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;DP=55;Dels=0.00;FS=2.268;HaplotypeScore=2.9962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.557;QD=16.52;ReadPosRankSum=-1.540;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,28:55:99:937,0,919
+chr1	26334	.	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.965;DP=50;Dels=0.00;FS=1.280;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=0;MQRankSum=-0.080;QD=6.24;ReadPosRankSum=3.146;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:38,12:50:99:340,0,1268
+chr1	26660	.	T	C	1722.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=38.42;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1751,129,0
+chr1	26702	.	A	T	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;DP=54;Dels=0.00;FS=10.090;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=12.53;ReadPosRankSum=0.052;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:31,23:54:99:705,0,1095
+chr1	26910	.	T	G	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DP=49;Dels=0.00;FS=1.167;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.332;QD=17.36;ReadPosRankSum=-0.491;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tct/Gct|S1297A|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_26832_27933)	GT:AD:DP:GQ:PL	0/1:23,26:49:99:879,0,760
+chr1	27095	.	A	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;DP=41;Dels=0.00;FS=4.926;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.784;QD=21.90;ReadPosRankSum=-0.151;EFF=SYNONYMOUS_CODING(LOW|SILENT|ccA/ccT|P1358|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_26832_27933)	GT:AD:DP:GQ:PL	0/1:14,27:41:99:926,0,391
+chr1	27394	.	A	G	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;DP=53;Dels=0.00;FS=5.960;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=0;MQRankSum=1.100;QD=17.52;ReadPosRankSum=-0.809;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAt/aGt|N1458S|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_26832_27933)	GT:AD:DP:GQ:PL	0/1:21,32:53:99:957,0,694
+chr1	27940	.	G	T	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.7336;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=-0.545;QD=15.06;ReadPosRankSum=-0.078;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:27,23:50:99:781,0,874
+chr1	28249	.	T	G	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;DP=41;Dels=0.00;FS=1.216;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-2.088;QD=19.41;ReadPosRankSum=0.696;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:18,23:41:99:824,0,613
+chr1	28269	.	C	T	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;DP=43;Dels=0.00;FS=2.755;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.609;QD=18.99;ReadPosRankSum=-1.031;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:17,26:43:99:845,0,552
+chr1	28430	.	T	C	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;DP=51;Dels=0.00;FS=1.101;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.035;QD=14.09;ReadPosRankSum=-0.123;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:28,23:51:99:747,0,985
+chr1	28468	.	T	C	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;DP=55;Dels=0.00;FS=3.953;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=1;MQRankSum=0.650;QD=15.50;ReadPosRankSum=0.419;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,25:55:99:881,0,955
+chr1	28487	.	T	G	2391.77	.	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=1;QD=33.84;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2420,178,0
+chr1	28990	.	G	T	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;DP=58;Dels=0.00;FS=16.948;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.031;QD=17.39;ReadPosRankSum=0.202;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,29:58:99:1037,0,1003
+chr1	29042	.	A	C	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;DP=57;Dels=0.00;FS=5.341;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.937;QD=18.98;ReadPosRankSum=1.049;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:26,31:57:99:1110,0,905
+chr1	29090	.	G	T	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.506;QD=23.46;ReadPosRankSum=-0.248;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:16,36:52:99:1248,0,498
+chr1	29155	.	C	T	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.513;QD=18.08;ReadPosRankSum=-0.050;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:914,0,699
+chr1	29212	.	T	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;DP=59;Dels=0.00;FS=2.209;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.359;QD=15.64;ReadPosRankSum=-2.011;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:31,28:59:99:951,0,1091
+chr1	29443	.	T	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.937;DP=47;Dels=0.00;FS=7.013;HaplotypeScore=2.8089;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=0.184;QD=8.40;ReadPosRankSum=0.033;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:28,19:47:99:423,0,970
+chr1	29543	.	G	C	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DP=52;Dels=0.00;FS=2.441;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=2;MQRankSum=-0.700;QD=11.09;ReadPosRankSum=0.260;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:31,21:52:99:605,0,1005
+chr1	29549	.	T	A	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;DP=50;Dels=0.00;FS=4.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=2;MQRankSum=0.096;QD=11.00;ReadPosRankSum=0.607;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:30,20:50:99:578,0,972
+chr1	29794	.	C	G	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;DP=51;Dels=0.00;FS=4.035;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=0.447;QD=14.07;ReadPosRankSum=-0.865;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,22:51:99:746,0,926
+chr1	30062	.	C	G	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DP=56;Dels=0.00;FS=2.302;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=0.330;QD=18.85;ReadPosRankSum=0.725;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:25,31:56:99:1084,0,794
+chr1	30283	.	A	G	1779.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.20;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1808,135,0
+chr1	30505	.	C	T	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;DP=59;Dels=0.00;FS=3.878;HaplotypeScore=2.5980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.388;QD=14.98;ReadPosRankSum=0.358;EFF=SYNONYMOUS_CODING(LOW|SILENT|acC/acT|T1668|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_30414_30776)	GT:AD:DP:GQ:PL	0/1:32,27:59:99:912,0,1076
+chr1	30578	.	A	G	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DP=59;Dels=0.00;FS=5.208;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-0.220;QD=16.66;ReadPosRankSum=0.523;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agt/Ggt|S1693G|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_30414_30776)	GT:AD:DP:GQ:PL	0/1:29,30:59:99:1011,0,918
+chr1	30610	.	G	A	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;DP=63;Dels=0.00;FS=2.122;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=-1.012;QD=13.55;ReadPosRankSum=0.709;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcG/tcA|S1703|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_30414_30776)	GT:AD:DP:GQ:PL	0/1:33,30:63:99:882,0,1106
+chr1	30810	.	T	G	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DP=52;Dels=0.00;FS=1.095;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=-0.743;QD=12.21;ReadPosRankSum=-0.141;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:32,20:52:99:663,0,1056
+chr1	30850	.	G	A	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;DP=56;Dels=0.00;FS=1.064;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=0.864;QD=19.55;ReadPosRankSum=1.099;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,34:56:99:1123,0,720
+chr1	30887	.	A	C	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DP=59;Dels=0.00;FS=7.277;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=0.841;QD=16.93;ReadPosRankSum=0.720;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,30:59:99:1027,0,969
+chr1	30927	.	C	G	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;DP=49;Dels=0.00;FS=8.536;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=2.040;QD=18.49;ReadPosRankSum=1.296;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:934,0,707
+chr1	31004	.	G	T	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=1.766;QD=15.64;ReadPosRankSum=1.054;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:30,29:59:99:951,0,1000
+chr1	31025	.	A	C	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DP=59;Dels=0.00;FS=5.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.371;QD=16.35;ReadPosRankSum=-0.205;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:29,30:59:99:993,0,950
+chr1	31036	.	T	G	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;DP=49;Dels=0.00;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=0.950;QD=16.34;ReadPosRankSum=-0.770;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,25:49:99:829,0,810
+chr1	31213	.	A	G	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;DP=51;Dels=0.00;FS=3.933;HaplotypeScore=24.9899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.293;QD=17.62;ReadPosRankSum=-0.311;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,27:51:99:927,0,826
+chr1	31497	.	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;DP=35;Dels=0.00;FS=4.982;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.347;QD=16.14;ReadPosRankSum=-0.479;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:17,18:35:99:593,0,535
+chr1	31537	.	T	A	1517.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=32.76;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1546,114,0
+chr1	31710	.	G	T	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;DP=41;Dels=0.00;FS=6.637;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-0.013;QD=13.19;ReadPosRankSum=0.876;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:22,19:41:99:569,0,741
+chr1	31712	.	G	A	1534.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=32.25;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1563,120,0
+chr1	31714	.	A	G	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;DP=40;Dels=0.00;FS=4.661;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=0.163;QD=15.17;ReadPosRankSum=1.165;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:21,19:40:99:635,0,705
+chr1	31754	.	A	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;DP=45;Dels=0.00;FS=1.145;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-1.058;QD=14.73;ReadPosRankSum=0.102;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,21:45:99:691,0,823
+chr1	31917	.	G	A	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DP=60;Dels=0.00;FS=3.613;HaplotypeScore=1.9981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.430;QD=20.53;ReadPosRankSum=0.174;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,36:60:99:1260,0,770
+chr1	31921	.	G	A	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;DP=55;Dels=0.00;FS=1.022;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.561;QD=19.12;ReadPosRankSum=0.691;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:23,32:55:99:1080,0,742
+chr1	32111	.	A	G	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;DP=49;Dels=0.00;FS=2.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.156;QD=18.44;ReadPosRankSum=0.211;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:932,0,729
+chr1	32214	.	G	A	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;DP=48;Dels=0.00;FS=6.054;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=1;MQRankSum=-0.118;QD=14.31;ReadPosRankSum=1.123;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:27,21:48:99:715,0,905
+chr1	32230	.	T	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.62;MQ0=2;MQRankSum=-0.176;QD=15.49;ReadPosRankSum=-1.233;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,23:44:99:710,0,732
+chr1	32312	.	A	T	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;DP=57;Dels=0.00;FS=7.278;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=1;MQRankSum=0.485;QD=16.08;ReadPosRankSum=-0.978;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,31:57:99:945,0,894
+chr1	32410	.	A	G	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DP=58;Dels=0.00;FS=7.306;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=-0.539;QD=13.43;ReadPosRankSum=-1.008;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:32,26:58:99:807,0,1109
+chr1	32760	.	G	T	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;DP=55;Dels=0.00;FS=1.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-0.396;QD=15.74;ReadPosRankSum=0.648;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,27:55:99:894,0,892
+chr1	32761	.	T	G	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=1.577;QD=15.01;ReadPosRankSum=1.274;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,25:53:99:824,0,925
+chr1	32762	.	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=0.151;QD=14.77;ReadPosRankSum=1.078;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,25:53:99:811,0,950
+chr1	32810	.	T	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;DP=44;Dels=0.00;FS=1.278;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=58.64;MQ0=0;MQRankSum=0.481;QD=15.63;ReadPosRankSum=0.246;EFF=INTRON(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,22:44:99:716,0,594
+chr1	32950	.	A	G	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DP=47;Dels=0.00;FS=1.150;HaplotypeScore=2.4536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.302;QD=20.89;ReadPosRankSum=-0.427;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtA/gtG|V1779|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:18,29:47:99:1010,0,566
+chr1	33016	.	T	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.8662;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=3;MQRankSum=-0.787;QD=2.54;ReadPosRankSum=-1.826;EFF=SYNONYMOUS_CODING(LOW|SILENT|ccT/ccG|P1801|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:37,11:48:99:150,0,1307
+chr1	33031	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=10.1485;MLEAC=1;MLEAF=0.500;MQ=57.82;MQ0=3;MQRankSum=0.261;QD=2.75;ReadPosRankSum=0.239;EFF=SYNONYMOUS_CODING(LOW|SILENT|caG/caA|Q1806|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:43,13:56:99:182,0,1518
+chr1	33037	.	T	C	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=22.7136;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=3;MQRankSum=1.518;QD=11.25;ReadPosRankSum=0.008;EFF=SYNONYMOUS_CODING(LOW|SILENT|ccT/ccC|P1808|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:37,22:59:99:692,0,1127
+chr1	33046	.	T	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=13.5584;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=3;MQRankSum=-1.164;QD=4.86;ReadPosRankSum=0.237;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctT/ctA|L1811|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,17:59:99:315,0,1459
+chr1	33129	.	A	T	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DP=65;Dels=0.00;FS=13.555;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=2.016;QD=6.77;ReadPosRankSum=-0.990;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAa/aTa|K1839I|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:47,18:65:99:468,0,1588
+chr1	33136	.	T	A	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;DP=61;Dels=0.00;FS=16.845;HaplotypeScore=2.3893;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=2.025;QD=6.85;ReadPosRankSum=-1.090;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtT/gtA|V1841|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,16:61:99:446,0,1486
+chr1	33139	.	G	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;DP=57;Dels=0.00;FS=11.731;HaplotypeScore=5.2554;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=1.441;QD=6.50;ReadPosRankSum=-1.169;EFF=SYNONYMOUS_CODING(LOW|SILENT|ccG/ccT|P1842|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,15:57:99:399,0,1431
+chr1	33146	.	A	C	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;DP=65;Dels=0.00;FS=13.675;HaplotypeScore=4.3887;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=0.261;QD=6.46;ReadPosRankSum=-1.112;EFF=SYNONYMOUS_CODING(LOW|SILENT|Agg/Cgg|R1845|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:48,17:65:99:448,0,1646
+chr1	33199	.	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-0.694;QD=8.54;ReadPosRankSum=0.743;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtG/gtA|V1862|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,21:72:99:643,0,1752
+chr1	33262	.	G	A	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;DP=78;Dels=0.00;FS=3.343;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=-1.196;QD=7.68;ReadPosRankSum=-0.514;EFF=SYNONYMOUS_CODING(LOW|SILENT|ggG/ggA|G1883|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:54,24:78:99:627,0,1895
+chr1	33289	.	A	G	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;DP=77;Dels=0.00;FS=6.644;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=1.605;QD=8.93;ReadPosRankSum=2.083;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcA/tcG|S1892|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:52,25:77:99:716,0,1845
+chr1	33320	.	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-0.494;QD=8.34;ReadPosRankSum=0.778;EFF=SYNONYMOUS_CODING(LOW|SILENT|Cta/Tta|L1903|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,24:75:99:654,0,1810
+chr1	33322	.	A	G	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=0.160;QD=7.88;ReadPosRankSum=0.267;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctA/ctG|L1903|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,23:74:99:611,0,1773
+chr1	33328	.	C	T	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=0.608;QD=8.90;ReadPosRankSum=-0.662;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctC/ctT|L1905|Cc01g00030|mRNA||GSCOCT00012437001|Exon_chr1_32889_33973),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,26:76:99:705,0,1756
+chr1	33511	.	T	C	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=28.0954;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-1.180;QD=7.78;ReadPosRankSum=-0.255;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:63,27:90:99:728,0,2042
+chr1	33518	.	T	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;DP=89;Dels=0.00;FS=0.876;HaplotypeScore=29.8838;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=0.272;QD=8.12;ReadPosRankSum=-1.798;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:62,27:89:99:751,0,2141
+chr1	33534	.	A	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DP=82;Dels=0.00;FS=1.081;HaplotypeScore=4.6992;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-0.708;QD=3.67;ReadPosRankSum=0.006;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:66,16:82:99:329,0,2363
+chr1	33542	.	A	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;DP=84;Dels=0.00;FS=2.421;HaplotypeScore=3.3981;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=-2.159;QD=3.43;ReadPosRankSum=-0.427;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:68,16:84:99:316,0,2385
+chr1	33544	.	T	C	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;DP=85;Dels=0.00;FS=5.901;HaplotypeScore=2.3989;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=-2.519;QD=2.62;ReadPosRankSum=0.156;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:70,15:85:99:251,0,2424
+chr1	33549	.	T	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DP=85;Dels=0.00;FS=5.608;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=-0.928;QD=3.20;ReadPosRankSum=-0.983;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:68,17:85:99:300,0,2403
+chr1	33583	.	A	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=0.183;QD=6.04;ReadPosRankSum=-0.048;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:75,25:100:99:632,0,2624
+chr1	33591	.	T	G	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.576;QD=6.44;ReadPosRankSum=0.766;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:75,27:102:99:685,0,2559
+chr1	33634	.	G	T	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DP=92;Dels=0.00;FS=2.888;HaplotypeScore=4.3078;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=0.309;QD=10.87;ReadPosRankSum=0.228;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:59,33:92:99:1028,0,2053
+chr1	33635	.	T	A	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;DP=93;Dels=0.00;FS=2.888;HaplotypeScore=4.3078;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=0.261;QD=10.54;ReadPosRankSum=0.285;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:60,33:93:99:1008,0,2023
+chr1	33648	.	T	C	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=29.5675;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.076;QD=12.40;ReadPosRankSum=-1.008;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:58,40:98:99:1243,0,1959
+chr1	33649	.	T	C	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DP=97;Dels=0.00;FS=0.836;HaplotypeScore=29.5675;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-0.096;QD=8.31;ReadPosRankSum=3.319;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:67,29:97:99:834,0,2354
+chr1	33669	.	A	G	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;DP=93;Dels=0.00;FS=2.768;HaplotypeScore=17.9952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.606;QD=12.58;ReadPosRankSum=0.465;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:55,38:93:99:1198,0,1907
+chr1	33692	.	G	A	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;DP=95;Dels=0.00;FS=8.628;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.994;QD=11.82;ReadPosRankSum=1.470;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:57,38:95:99:1151,0,1994
+chr1	33756	.	T	A	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;DP=101;Dels=0.00;FS=21.595;HaplotypeScore=25.9789;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.917;QD=10.34;ReadPosRankSum=-0.467;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:66,35:101:99:1073,0,2323
+chr1	33765	.	T	C	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;DP=97;Dels=0.00;FS=2.797;HaplotypeScore=26.9788;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=-0.109;QD=21.62;ReadPosRankSum=-1.754;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:35,62:97:99:2125,0,1120
+chr1	33783	.	C	A	3600.77	.	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=35.83;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3629,274,0
+chr1	33800	.	T	C	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;DP=84;Dels=0.00;FS=1.935;HaplotypeScore=2.8243;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-2.651;QD=8.32;ReadPosRankSum=0.264;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:59,25:84:99:727,0,2083
+chr1	33805	.	A	G	2115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DP=85;Dels=0.00;FS=0.901;HaplotypeScore=2.8243;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=4.074;QD=24.89;ReadPosRankSum=-0.738;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,60:85:99:2144,0,700
+chr1	33816	.	T	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=74;Dels=0.00;FS=2.126;HaplotypeScore=26.8598;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=0;MQRankSum=-5.767;QD=8.16;ReadPosRankSum=0.084;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:53,21:74:99:632,0,1874
+chr1	33817	.	C	T	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;DP=75;Dels=0.00;FS=2.086;HaplotypeScore=25.9931;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=0;MQRankSum=-1.936;QD=23.89;ReadPosRankSum=-0.278;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,51:75:99:1820,0,743
+chr1	33825	.	C	G	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;DP=73;Dels=0.00;FS=2.189;HaplotypeScore=66.4539;MLEAC=1;MLEAF=0.500;MQ=57.65;MQ0=0;MQRankSum=-6.355;QD=8.34;ReadPosRankSum=-0.152;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:52,21:73:99:637,0,1756
+chr1	33827	.	A	G	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;DP=73;Dels=0.00;FS=3.559;HaplotypeScore=65.4541;MLEAC=1;MLEAF=0.500;MQ=57.65;MQ0=0;MQRankSum=-6.574;QD=8.26;ReadPosRankSum=-0.262;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:52,21:73:99:631,0,1850
+chr1	33850	.	G	A	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DP=85;Dels=0.00;FS=5.848;HaplotypeScore=20.9875;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-4.789;QD=11.39;ReadPosRankSum=-1.730;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:54,31:85:99:996,0,1874
+chr1	33851	.	C	T	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=85;Dels=0.00;FS=5.930;HaplotypeScore=20.9875;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-5.199;QD=11.44;ReadPosRankSum=-1.593;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:54,31:85:99:1001,0,1842
+chr1	33860	.	A	T	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;DP=94;Dels=0.00;FS=0.798;HaplotypeScore=46.8065;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=2.315;QD=12.04;ReadPosRankSum=-0.705;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:56,38:94:99:1160,0,1948
+chr1	33863	.	A	G	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.497;DP=93;Dels=0.00;FS=0.897;HaplotypeScore=49.5927;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=2.899;QD=7.59;ReadPosRankSum=-0.568;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:68,25:93:99:734,0,2127
+chr1	33867	.	T	C	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;DP=88;Dels=0.00;FS=5.938;HaplotypeScore=51.2136;MLEAC=1;MLEAF=0.500;MQ=58.15;MQ0=0;MQRankSum=-2.770;QD=9.97;ReadPosRankSum=1.358;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:59,29:88:99:906,0,2073
+chr1	33870	.	A	T	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;DP=86;Dels=0.00;FS=6.242;HaplotypeScore=47.2312;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-3.848;QD=9.56;ReadPosRankSum=2.170;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:58,28:86:99:850,0,1959
+chr1	33871	.	G	C	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DP=86;Dels=0.00;FS=7.832;HaplotypeScore=48.2298;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-3.203;QD=10.01;ReadPosRankSum=2.382;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:58,28:86:99:889,0,1966
+chr1	33872	.	A	T	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;DP=86;Dels=0.00;FS=5.975;HaplotypeScore=48.2298;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-2.211;QD=10.02;ReadPosRankSum=2.503;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:57,29:86:99:890,0,1958
+chr1	33881	.	T	C	2424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=26.4025;MLEAC=1;MLEAF=0.500;MQ=58.35;MQ0=0;MQRankSum=-0.490;QD=25.80;ReadPosRankSum=1.236;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:24,70:94:99:2453,0,686
+chr1	33890	.	C	T	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;DP=97;Dels=0.00;FS=16.850;HaplotypeScore=21.9948;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=-2.421;QD=13.80;ReadPosRankSum=1.464;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:56,41:97:99:1367,0,1887
+chr1	33916	.	A	T	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;DP=82;Dels=0.00;FS=19.829;HaplotypeScore=1.8110;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-0.075;QD=14.80;ReadPosRankSum=1.230;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:45,37:82:99:1242,0,1531
+chr1	33954	.	T	A	3289.77	.	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.9997;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=34.54;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3318,250,0
+chr1	33959	.	A	T	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;DP=80;Dels=0.00;FS=8.032;HaplotypeScore=19.9908;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-1.205;QD=10.91;ReadPosRankSum=-0.277;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:52,28:80:99:901,0,1837
+chr1	33967	.	G	T	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;DP=83;Dels=0.00;FS=3.410;HaplotypeScore=22.8560;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=0.531;QD=6.85;ReadPosRankSum=0.160;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:61,22:83:99:597,0,2149
+chr1	33970	.	T	C	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;DP=83;Dels=0.00;FS=4.648;HaplotypeScore=21.8565;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=-0.792;QD=9.15;ReadPosRankSum=-1.739;EFF=UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|),UTR_3_PRIME(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|)	GT:AD:DP:GQ:PL	0/1:56,26:83:99:788,0,1880
+chr1	33978	.	T	C	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=-1.032;QD=8.11;ReadPosRankSum=-1.314;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,23:81:99:685,0,2028
+chr1	33982	.	G	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-3.048;QD=7.57;ReadPosRankSum=-1.195;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:56,21:77:99:611,0,1932
+chr1	34048	.	T	C	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DP=83;Dels=0.00;FS=3.608;HaplotypeScore=36.7760;MLEAC=1;MLEAF=0.500;MQ=55.89;MQ0=1;MQRankSum=2.374;QD=5.44;ReadPosRankSum=1.714;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,20:83:99:480,0,2239
+chr1	34056	.	A	T	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DP=83;Dels=0.00;FS=11.444;HaplotypeScore=20.9499;MLEAC=1;MLEAF=0.500;MQ=55.66;MQ0=1;MQRankSum=-5.405;QD=13.89;ReadPosRankSum=-2.798;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:47,36:83:99:1181,0,1566
+chr1	34066	.	T	C	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;DP=87;Dels=0.00;FS=8.990;HaplotypeScore=6.9949;MLEAC=1;MLEAF=0.500;MQ=55.41;MQ0=2;MQRankSum=-5.146;QD=15.43;ReadPosRankSum=-0.920;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:47,40:87:99:1371,0,1526
+chr1	34080	.	G	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;DP=97;Dels=0.00;FS=6.820;HaplotypeScore=18.9960;MLEAC=1;MLEAF=0.500;MQ=55.90;MQ0=2;MQRankSum=-2.713;QD=2.35;ReadPosRankSum=-0.460;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:84,13:97:99:256,0,2928
+chr1	34081	.	A	G	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;DP=97;Dels=0.00;FS=1.486;HaplotypeScore=18.9960;MLEAC=1;MLEAF=0.500;MQ=55.90;MQ0=2;MQRankSum=-3.102;QD=0.20;ReadPosRankSum=1.722;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:89,8:97:48:48,0,3121
+chr1	34096	.	C	A	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=13.7725;MLEAC=1;MLEAF=0.500;MQ=56.47;MQ0=1;MQRankSum=0.463;QD=5.36;ReadPosRankSum=3.585;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:82,22:104:99:586,0,2872
+chr1	34098	.	A	G	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=13.7725;MLEAC=1;MLEAF=0.500;MQ=56.44;MQ0=1;MQRankSum=-3.070;QD=8.59;ReadPosRankSum=3.187;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:72,31:103:99:913,0,2440
+chr1	34099	.	T	A	3974.77	.	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=13.7725;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=1;QD=32.71;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,103:103:99:4003,298,0
+chr1	34115	.	C	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;DP=117;Dels=0.00;FS=2.007;HaplotypeScore=38.4977;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=1;MQRankSum=0.701;QD=4.35;ReadPosRankSum=0.440;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:95,22:117:99:537,0,3369
+chr1	34126	.	A	G	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;DP=133;Dels=0.00;FS=3.779;HaplotypeScore=3.5158;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=1;MQRankSum=4.108;QD=6.87;ReadPosRankSum=-0.606;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:99,34:133:99:942,0,3399
+chr1	34143	.	T	C	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DP=120;Dels=0.00;FS=6.188;HaplotypeScore=2.5772;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=1;MQRankSum=1.550;QD=10.02;ReadPosRankSum=-0.532;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:80,40:120:99:1231,0,2753
+chr1	34161	.	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;DP=113;Dels=0.00;FS=0.978;HaplotypeScore=2.7868;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=1;MQRankSum=-0.596;QD=3.30;ReadPosRankSum=1.772;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:94,18:113:99:401,0,3276
+chr1	34191	.	A	G	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;DP=45;Dels=0.00;FS=9.532;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=0.990;QD=18.35;ReadPosRankSum=1.354;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,24:45:99:854,0,672
+chr1	34210	.	A	G	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;DP=49;Dels=0.00;FS=6.502;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.291;QD=18.63;ReadPosRankSum=0.372;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:941,0,668
+chr1	34256	.	A	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;DP=36;Dels=0.00;FS=2.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=0.317;QD=15.52;ReadPosRankSum=1.743;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:19,17:36:99:587,0,649
+chr1	34258	.	C	T	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DP=33;Dels=0.00;FS=3.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=0.991;QD=16.78;ReadPosRankSum=1.567;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:16,17:33:99:582,0,541
+chr1	34267	.	C	T	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;DP=43;Dels=0.00;FS=1.232;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=0.832;QD=12.16;ReadPosRankSum=0.186;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,17:43:99:551,0,893
+chr1	34273	.	T	C	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DP=50;Dels=0.00;FS=4.059;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-1.867;QD=19.76;ReadPosRankSum=0.865;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,29:50:99:1016,0,658
+chr1	34278	.	G	C	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;DP=51;Dels=0.00;FS=4.059;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.998;QD=12.47;ReadPosRankSum=-1.360;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:29,22:51:99:664,0,1003
+chr1	34304	.	G	A	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DP=62;Dels=0.00;FS=23.390;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=1.136;QD=19.01;ReadPosRankSum=0.511;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:27,35:62:99:1207,0,837
+chr1	34343	.	C	T	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DP=52;Dels=0.00;FS=19.687;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=0.695;QD=19.98;ReadPosRankSum=-1.417;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,30:52:99:1067,0,693
+chr1	34344	.	A	G	2050.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=29.23;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2079,154,0
+chr1	34345	.	A	G	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DP=53;Dels=0.00;FS=19.902;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-0.803;QD=12.77;ReadPosRankSum=1.742;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:705,0,1098
+chr1	34354	.	G	A	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=50;Dels=0.00;FS=11.083;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=-1.241;QD=19.06;ReadPosRankSum=-1.182;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,28:50:99:981,0,660
+chr1	34385	.	T	G	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;DP=63;Dels=0.00;FS=57.702;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=48.13;MQ0=0;MQRankSum=-5.740;QD=12.35;ReadPosRankSum=-2.289;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:32,31:63:99:806,0,989
+chr1	34399	.	A	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;DP=48;Dels=0.00;FS=35.938;HaplotypeScore=11.6760;MLEAC=1;MLEAF=0.500;MQ=50.85;MQ0=0;MQRankSum=-4.904;QD=7.72;ReadPosRankSum=0.742;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:30,17:48:99:399,0,977
+chr1	34401	.	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;DP=47;Dels=0.00;FS=33.249;HaplotypeScore=11.6760;MLEAC=1;MLEAF=0.500;MQ=50.64;MQ0=0;MQRankSum=-4.904;QD=7.87;ReadPosRankSum=3.000;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:30,17:47:99:398,0,951
+chr1	34402	.	C	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DP=48;Dels=0.00;FS=36.487;HaplotypeScore=11.6760;MLEAC=1;MLEAF=0.500;MQ=50.85;MQ0=0;MQRankSum=-4.958;QD=7.66;ReadPosRankSum=2.846;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:31,17:48:99:396,0,1008
+chr1	34406	.	A	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;DP=49;Dels=0.00;FS=17.048;HaplotypeScore=11.6760;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-4.478;QD=1.51;ReadPosRankSum=2.915;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,10:49:99:102,0,1316
+chr1	34420	.	C	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;DP=45;Dels=0.00;FS=27.476;HaplotypeScore=2.6635;MLEAC=1;MLEAF=0.500;MQ=52.05;MQ0=0;MQRankSum=-4.989;QD=5.57;ReadPosRankSum=4.621;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:31,14:45:99:279,0,1055
+chr1	34423	.	G	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.758;DP=45;Dels=0.00;FS=27.476;HaplotypeScore=2.6635;MLEAC=1;MLEAF=0.500;MQ=52.05;MQ0=0;MQRankSum=-4.989;QD=5.55;ReadPosRankSum=4.989;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:31,14:45:99:278,0,1050
+chr1	34434	.	C	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;DP=29;Dels=0.00;FS=1.455;HaplotypeScore=1.6637;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=-0.196;QD=12.99;ReadPosRankSum=0.065;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:15,14:29:99:405,0,509
+chr1	34498	.	G	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;DP=43;Dels=0.00;FS=5.601;HaplotypeScore=1.3123;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-0.273;QD=5.44;ReadPosRankSum=-0.129;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:33,10:43:99:262,0,1179
+chr1	34554	.	A	G	1556.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7885;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=28.66;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1585,120,0
+chr1	34561	.	G	A	1507.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=28.74;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1536,123,0
+chr1	34587	.	A	G	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=1.339;QD=18.49;ReadPosRankSum=-1.256;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:13,17:30:99:583,0,433
+chr1	34649	.	C	T	1118.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=36.04;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1147,84,0
+chr1	34723	.	C	T	1680.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=32.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1709,132,0
+chr1	34750	.	C	T	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DP=43;Dels=0.00;FS=6.795;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=55.31;MQ0=0;MQRankSum=0.628;QD=19.09;ReadPosRankSum=-1.096;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:18,25:43:99:849,0,524
+chr1	34774	.	C	A	26.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.29;MQ0=4;MQRankSum=-2.557;QD=0.57;ReadPosRankSum=-2.330;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:38,5:47:55:55,0,1310
+chr1	34784	.	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=1;MLEAF=0.500;MQ=47.92;MQ0=4;MQRankSum=-2.318;QD=1.69;ReadPosRankSum=-1.276;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:40,6:46:99:106,0,1235
+chr1	34787	.	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=1;MLEAF=0.500;MQ=47.62;MQ0=4;MQRankSum=-2.195;QD=1.88;ReadPosRankSum=-0.682;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,6:45:99:113,0,1162
+chr1	34789	.	C	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DP=49;Dels=0.00;FS=1.637;HaplotypeScore=3.7163;MLEAC=1;MLEAF=0.500;MQ=47.34;MQ0=4;MQRankSum=-2.928;QD=2.06;ReadPosRankSum=-1.112;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:38,11:49:99:129,0,1309
+chr1	34798	.	A	G	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7158;MLEAC=1;MLEAF=0.500;MQ=43.82;MQ0=4;MQRankSum=-3.693;QD=7.86;ReadPosRankSum=-1.219;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,18:60:99:500,0,1302
+chr1	34809	.	A	C	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;DP=57;Dels=0.00;FS=2.399;HaplotypeScore=9.9935;MLEAC=1;MLEAF=0.500;MQ=43.70;MQ0=4;MQRankSum=-4.370;QD=11.56;ReadPosRankSum=-0.063;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:30,27:57:99:687,0,973
+chr1	34810	.	A	T	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=9.9935;MLEAC=1;MLEAF=0.500;MQ=43.70;MQ0=4;MQRankSum=-3.916;QD=8.31;ReadPosRankSum=1.249;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,18:57:99:502,0,1179
+chr1	34837	.	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;DP=54;Dels=0.00;FS=3.624;HaplotypeScore=73.4163;MLEAC=1;MLEAF=0.500;MQ=45.81;MQ0=4;MQRankSum=-0.811;QD=1.79;ReadPosRankSum=1.678;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:44,10:54:99:125,0,1456
+chr1	34841	.	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.447;DP=52;Dels=0.00;FS=1.656;HaplotypeScore=90.4049;MLEAC=1;MLEAF=0.500;MQ=45.54;MQ0=4;MQRankSum=-0.555;QD=2.05;ReadPosRankSum=2.016;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,10:52:99:135,0,1269
+chr1	34842	.	A	G	26.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.032;DP=49;Dels=0.00;FS=4.664;HaplotypeScore=91.4038;MLEAC=1;MLEAF=0.500;MQ=45.63;MQ0=4;MQRankSum=1.770;QD=0.55;ReadPosRankSum=-3.277;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:43,6:49:55:55,0,1172
+chr1	34864	.	A	G	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;DP=48;Dels=0.00;FS=9.092;HaplotypeScore=49.3566;MLEAC=1;MLEAF=0.500;MQ=53.31;MQ0=1;MQRankSum=-4.082;QD=7.35;ReadPosRankSum=3.873;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:34,14:48:99:381,0,1135
+chr1	34865	.	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;DP=48;Dels=0.00;FS=19.848;HaplotypeScore=56.3327;MLEAC=1;MLEAF=0.500;MQ=53.31;MQ0=1;MQRankSum=-2.525;QD=1.75;ReadPosRankSum=3.123;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,7:48:99:112,0,1393
+chr1	34879	.	G	C	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DP=71;Dels=0.04;FS=44.625;HaplotypeScore=41.5658;MLEAC=1;MLEAF=0.500;MQ=48.93;MQ0=4;MQRankSum=-6.053;QD=8.41;ReadPosRankSum=-2.378;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,27:68:99:625,0,1412
+chr1	34886	.	A	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=74;Dels=0.00;FS=13.029;HaplotypeScore=24.3736;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=4;MQRankSum=-3.738;QD=0.75;ReadPosRankSum=-2.040;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:64,10:74:84:84,0,2145
+chr1	34898	.	G	A	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;DP=77;Dels=0.00;FS=42.789;HaplotypeScore=2.7797;MLEAC=1;MLEAF=0.500;MQ=48.86;MQ0=4;MQRankSum=-5.924;QD=7.45;ReadPosRankSum=0.652;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,27:77:99:602,0,1708
+chr1	34918	.	G	A	1463.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=1;QD=29.80;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1492,114,0
+chr1	34936	.	A	C	1246.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-1.529;QD=26.64;ReadPosRankSum=1.427;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:1,33:34:78:1275,78,0
+chr1	34944	.	G	T	1292.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=31.55;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1321,99,0
+chr1	34949	.	A	T	1277.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=31.28;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1306,99,0
+chr1	34958	.	G	A	1117.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=28.34;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1146,87,0
+chr1	34980	.	A	C	287.78	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=33.07;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,8:8:24:316,24,0
+chr1	34983	.	A	T	363.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=30.83;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:30:392,30,0
+chr1	34999	.	C	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DP=46;Dels=0.00;FS=5.844;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=50.81;MQ0=0;MQRankSum=-2.426;QD=3.97;ReadPosRankSum=-3.873;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:36,9:46:99:211,0,1278
+chr1	35001	.	T	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;DP=47;Dels=0.00;FS=8.113;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=50.71;MQ0=0;MQRankSum=-2.404;QD=4.29;ReadPosRankSum=-3.522;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:37,10:47:99:230,0,1358
+chr1	35012	.	C	T	3813.77	.	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.9984;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=18;QD=31.52;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3842,307,0
+chr1	35021	.	C	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;DP=128;Dels=0.00;FS=17.106;HaplotypeScore=9.9826;MLEAC=1;MLEAF=0.500;MQ=43.09;MQ0=18;MQRankSum=-0.515;QD=0.24;ReadPosRankSum=2.376;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:118,10:128:59:59,0,3327
+chr1	35026	.	C	T	1359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;DP=127;Dels=0.00;FS=27.172;HaplotypeScore=10.7166;MLEAC=1;MLEAF=0.500;MQ=43.10;MQ0=18;MQRankSum=-7.635;QD=10.71;ReadPosRankSum=-3.755;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,50:127:99:1388,0,1991
+chr1	35045	.	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=40.6483;MLEAC=1;MLEAF=0.500;MQ=46.17;MQ0=16;MQRankSum=3.328;QD=1.80;ReadPosRankSum=-0.988;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:117,16:133:99:267,0,3398
+chr1	35046	.	A	G	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.005;DP=127;Dels=0.00;FS=27.280;HaplotypeScore=39.9143;MLEAC=1;MLEAF=0.500;MQ=47.31;MQ0=14;MQRankSum=-8.458;QD=9.09;ReadPosRankSum=4.649;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:83,44:127:99:1183,0,2391
+chr1	35047	.	T	C	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.640;DP=126;Dels=0.00;FS=10.732;HaplotypeScore=40.9141;MLEAC=1;MLEAF=0.500;MQ=47.97;MQ0=14;MQRankSum=-8.951;QD=11.76;ReadPosRankSum=7.385;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:75,51:126:99:1510,0,2115
+chr1	35052	.	A	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DP=120;Dels=0.00;FS=2.223;HaplotypeScore=77.1059;MLEAC=1;MLEAF=0.500;MQ=49.27;MQ0=9;MQRankSum=2.565;QD=2.49;ReadPosRankSum=-2.506;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:104,16:120:99:327,0,3293
+chr1	35056	.	C	T	4286.77	.	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=62.1757;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=7;QD=31.51;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,120:120:99:4315,337,0
+chr1	35058	.	C	T	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.351;DP=119;Dels=0.00;FS=4.666;HaplotypeScore=52.1779;MLEAC=1;MLEAF=0.500;MQ=50.70;MQ0=5;MQRankSum=-5.373;QD=3.75;ReadPosRankSum=2.500;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:96,23:119:99:475,0,3197
+chr1	35060	.	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.055;DP=117;Dels=0.00;FS=17.881;HaplotypeScore=51.1782;MLEAC=1;MLEAF=0.500;MQ=51.17;MQ0=4;MQRankSum=-5.477;QD=0.68;ReadPosRankSum=3.813;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:103,14:117:99:108,0,3463
+chr1	35062	.	G	A	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;DP=113;Dels=0.00;FS=18.470;HaplotypeScore=57.1737;MLEAC=1;MLEAF=0.500;MQ=52.38;MQ0=0;MQRankSum=-8.371;QD=7.89;ReadPosRankSum=5.555;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,36:113:99:920,0,2624
+chr1	35075	.	G	C	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;DP=107;Dels=0.00;FS=5.257;HaplotypeScore=32.3401;MLEAC=1;MLEAF=0.500;MQ=53.81;MQ0=0;MQRankSum=-8.219;QD=7.81;ReadPosRankSum=1.447;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:74,33:107:99:864,0,2509
+chr1	35077	.	C	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=33.3400;MLEAC=1;MLEAF=0.500;MQ=53.72;MQ0=0;MQRankSum=-5.857;QD=2.21;ReadPosRankSum=0.993;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:80,14:107:99:265,0,2739
+chr1	35087	.	C	T	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=97;Dels=0.00;FS=2.025;HaplotypeScore=16.1548;MLEAC=1;MLEAF=0.500;MQ=54.33;MQ0=0;MQRankSum=-7.328;QD=5.34;ReadPosRankSum=-2.579;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,24:97:99:546,0,2468
+chr1	35095	.	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DP=88;Dels=0.00;FS=1.246;HaplotypeScore=2.7884;MLEAC=1;MLEAF=0.500;MQ=56.73;MQ0=0;MQRankSum=-5.345;QD=0.66;ReadPosRankSum=-2.995;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:76,11:88:86:86,0,2675
+chr1	35096	.	A	G	27.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DP=88;Dels=0.00;FS=1.393;HaplotypeScore=2.7884;MLEAC=1;MLEAF=0.500;MQ=56.94;MQ0=0;MQRankSum=-5.134;QD=0.32;ReadPosRankSum=-2.860;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:78,10:88:56:56,0,2777
+chr1	35164	.	T	G	3737.77	.	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=115.8992;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=26.59;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3766,283,0
+chr1	35172	.	A	C	1478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=29.8173;MLEAC=1;MLEAF=0.500;MQ=54.75;MQ0=2;MQRankSum=2.017;QD=14.64;ReadPosRankSum=1.119;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,46:101:99:1507,0,1792
+chr1	35184	.	C	G	3588.77	.	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=2;QD=33.80;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3617,277,0
+chr1	35205	.	G	A	2760.77	.	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=2;QD=34.51;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2789,217,0
+chr1	35248	.	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;DP=59;Dels=0.00;FS=5.425;HaplotypeScore=11.8817;MLEAC=1;MLEAF=0.500;MQ=36.39;MQ0=4;MQRankSum=1.904;QD=4.39;ReadPosRankSum=-1.399;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:46,13:59:99:287,0,1045
+chr1	35251	.	A	G	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;DP=57;Dels=0.00;FS=6.294;HaplotypeScore=10.9876;MLEAC=1;MLEAF=0.500;MQ=36.08;MQ0=4;MQRankSum=-1.563;QD=8.49;ReadPosRankSum=2.153;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:31,26:57:99:512,0,755
+chr1	35260	.	T	G	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DP=49;Dels=0.00;FS=2.866;HaplotypeScore=5.9548;MLEAC=1;MLEAF=0.500;MQ=32.62;MQ0=4;MQRankSum=-1.252;QD=6.97;ReadPosRankSum=2.493;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,21:49:99:370,0,613
+chr1	35264	.	G	A	863.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.9548;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=4;QD=21.07;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:75:892,75,0
+chr1	35265	.	C	A	872.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.9548;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=4;QD=20.78;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:75:901,75,0
+chr1	35283	.	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9990;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=2;QD=24.60;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1332,111,0
+chr1	35288	.	G	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.9868;MLEAC=1;MLEAF=0.500;MQ=37.11;MQ0=2;MQRankSum=-1.073;QD=4.96;ReadPosRankSum=2.419;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:37,17:54:99:296,0,926
+chr1	35292	.	T	C	1507.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.062;DP=60;Dels=0.00;FS=4.130;HaplotypeScore=6.9868;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=2;MQRankSum=-0.557;QD=25.13;ReadPosRankSum=0.247;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:1,57:60:92:1536,92,0
+chr1	35316	.	G	A	2080.77	.	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=1;QD=31.06;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2109,165,0
+chr1	35396	.	A	G	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.6626;MLEAC=1;MLEAF=0.500;MQ=54.52;MQ0=0;MQRankSum=3.180;QD=22.13;ReadPosRankSum=0.855;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:13,29:43:99:980,0,405
+chr1	35403	.	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.6634;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=35.15;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1677,126,0
+chr1	35406	.	T	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.6632;MLEAC=1;MLEAF=0.500;MQ=54.09;MQ0=0;MQRankSum=-2.541;QD=9.24;ReadPosRankSum=0.520;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:27,13:40:99:398,0,951
+chr1	35445	.	C	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;DP=32;Dels=0.00;FS=3.211;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=45.27;MQ0=0;MQRankSum=2.394;QD=21.12;ReadPosRankSum=-0.292;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:12,20:32:99:704,0,324
+chr1	35483	.	T	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.95;MQ0=0;MQRankSum=-1.247;QD=7.15;ReadPosRankSum=-1.120;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,10:31:99:250,0,750
+chr1	35491	.	G	T	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=20.9946;MLEAC=1;MLEAF=0.500;MQ=48.70;MQ0=0;MQRankSum=1.222;QD=19.59;ReadPosRankSum=1.810;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:15,22:37:99:753,0,428
+chr1	35497	.	G	A	1437.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=20.9946;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=32.19;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1466,111,0
+chr1	35499	.	A	G	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=21.8612;MLEAC=1;MLEAF=0.500;MQ=48.22;MQ0=1;MQRankSum=-1.459;QD=11.77;ReadPosRankSum=-1.487;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,18:40:99:499,0,781
+chr1	35561	.	A	T	530.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=35.92;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,14:14:42:559,42,0
+chr1	35564	.	T	A	470.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=29.29;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:36:499,36,0
+chr1	35576	.	G	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;DP=32;Dels=0.00;FS=3.734;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=51.67;MQ0=1;MQRankSum=-4.149;QD=7.84;ReadPosRankSum=-4.397;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:20,12:32:99:279,0,688
+chr1	35588	.	C	T	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DP=38;Dels=0.00;FS=5.225;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=1;MQRankSum=-3.261;QD=9.02;ReadPosRankSum=-2.020;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,14:38:99:371,0,819
+chr1	35633	.	G	A	1506.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=1;QD=27.90;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1535,117,0
+chr1	35691	.	T	C	1735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;DP=81;Dels=0.00;FS=0.889;HaplotypeScore=1.7319;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=0.513;QD=21.43;ReadPosRankSum=0.601;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:30,51:81:99:1764,0,836
+chr1	35707	.	C	A	3162.77	.	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=32.53;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3191,238,0
+chr1	35739	.	G	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DP=74;Dels=0.00;FS=17.134;HaplotypeScore=1.6483;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-0.689;QD=4.63;ReadPosRankSum=-2.515;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,16:74:99:371,0,2031
+chr1	35804	.	T	C	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;DP=109;Dels=0.00;FS=5.672;HaplotypeScore=3.9987;MLEAC=1;MLEAF=0.500;MQ=53.96;MQ0=1;MQRankSum=-6.467;QD=6.13;ReadPosRankSum=0.466;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:81,28:109:99:696,0,2821
+chr1	35807	.	A	G	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DP=108;Dels=0.00;FS=7.240;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=2;MQRankSum=-6.417;QD=6.27;ReadPosRankSum=0.584;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:80,28:108:99:705,0,2709
+chr1	35843	.	A	T	2756.77	.	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=30.17;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2785,214,0
+chr1	35857	.	C	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=53.9074;MLEAC=1;MLEAF=0.500;MQ=57.77;MQ0=0;MQRankSum=-0.442;QD=2.19;ReadPosRankSum=-1.176;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:53,10:68:99:177,0,1820
+chr1	35860	.	A	C	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DP=74;Dels=0.00;FS=3.561;HaplotypeScore=73.8862;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=0;MQRankSum=0.722;QD=6.77;ReadPosRankSum=3.931;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,20:74:99:529,0,1811
+chr1	35870	.	A	T	2448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=27.0091;MLEAC=1;MLEAF=0.500;MQ=56.74;MQ0=1;MQRankSum=2.228;QD=26.05;ReadPosRankSum=-0.574;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,72:94:99:2477,0,566
+chr1	35900	.	T	C	3238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;DP=119;Dels=0.00;FS=8.381;HaplotypeScore=194.4919;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=3;MQRankSum=-1.040;QD=27.22;ReadPosRankSum=1.369;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:23,96:119:99:3267,0,489
+chr1	35951	.	T	A	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7331;MLEAC=1;MLEAF=0.500;MQ=56.75;MQ0=2;MQRankSum=-0.149;QD=8.00;ReadPosRankSum=0.625;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:90,37:127:99:1044,0,2832
+chr1	35968	.	C	T	2056.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=50.3624;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=29.37;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,55:56:99:2085,162,0
+chr1	35979	.	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;DP=96;Dels=0.00;FS=17.564;HaplotypeScore=12.6997;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=2;MQRankSum=-1.392;QD=0.89;ReadPosRankSum=3.011;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:86,10:96:99:114,0,2869
+chr1	36004	.	G	A	17.84	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;DP=72;Dels=0.00;FS=9.104;HaplotypeScore=76.6328;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=0;MQRankSum=-1.369;QD=0.25;ReadPosRankSum=-1.140;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:65,7:72:46:46,0,2207
+chr1	36045	.	T	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=132;Dels=0.00;FS=0.896;HaplotypeScore=43.4929;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=-0.565;QD=3.33;ReadPosRankSum=1.536;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:110,22:132:99:468,0,3861
+chr1	36103	.	G	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;DP=141;Dels=0.00;FS=41.173;HaplotypeScore=7.9970;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=1.254;QD=0.83;ReadPosRankSum=2.083;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:126,15:141:99:145,0,4391
+chr1	36153	.	G	C	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DP=89;Dels=0.00;FS=7.730;HaplotypeScore=3.8273;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-0.014;QD=6.33;ReadPosRankSum=1.203;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:68,21:89:99:592,0,2434
+chr1	36180	.	T	A	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;DP=100;Dels=0.00;FS=0.858;HaplotypeScore=3.7118;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=0.137;QD=7.78;ReadPosRankSum=0.387;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:71,29:100:99:806,0,2559
+chr1	36205	.	C	T	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;DP=124;Dels=0.00;FS=0.755;HaplotypeScore=17.7034;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=0.466;QD=7.79;ReadPosRankSum=-0.305;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:89,35:124:99:994,0,3181
+chr1	36213	.	T	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;DP=132;Dels=0.00;FS=2.347;HaplotypeScore=19.5352;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=-0.237;QD=1.48;ReadPosRankSum=0.294;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:117,15:132:99:223,0,4265
+chr1	36259	.	T	C	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;DP=134;Dels=0.00;FS=3.770;HaplotypeScore=89.4890;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=-1.222;QD=6.63;ReadPosRankSum=-1.341;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:100,33:134:99:916,0,3559
+chr1	36261	.	A	G	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DP=132;Dels=0.00;FS=2.746;HaplotypeScore=86.5740;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=0.433;QD=5.91;ReadPosRankSum=-0.757;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:100,32:132:99:809,0,3579
+chr1	36273	.	T	C	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.181;DP=118;Dels=0.00;FS=1.774;HaplotypeScore=117.6849;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=1;MQRankSum=0.361;QD=5.75;ReadPosRankSum=-0.661;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:90,28:118:99:707,0,3229
+chr1	36286	.	A	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;DP=98;Dels=0.00;FS=0.915;HaplotypeScore=132.2089;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=1;MQRankSum=2.210;QD=5.89;ReadPosRankSum=0.615;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:75,23:98:99:605,0,2724
+chr1	36287	.	A	T	2373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.322;DP=96;Dels=0.00;FS=1.851;HaplotypeScore=132.2089;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=1;MQRankSum=0.853;QD=24.73;ReadPosRankSum=1.588;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,68:96:99:2402,0,835
+chr1	36289	.	T	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=83.8835;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=1;MQRankSum=2.678;QD=5.48;ReadPosRankSum=1.179;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,22:99:99:571,0,2798
+chr1	36290	.	A	T	2719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=84.8831;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=1;MQRankSum=-1.327;QD=27.20;ReadPosRankSum=-0.453;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,76:100:99:2748,0,648
+chr1	36320	.	T	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;DP=92;Dels=0.00;FS=0.939;HaplotypeScore=45.5348;MLEAC=1;MLEAF=0.500;MQ=57.14;MQ0=1;MQRankSum=-3.017;QD=6.49;ReadPosRankSum=0.079;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:69,23:92:99:625,0,2459
+chr1	36333	.	G	A	2428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;DP=96;Dels=0.00;FS=12.492;HaplotypeScore=24.9952;MLEAC=1;MLEAF=0.500;MQ=56.69;MQ0=1;MQRankSum=-3.960;QD=25.30;ReadPosRankSum=0.841;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:25,71:96:99:2457,0,747
+chr1	36341	.	T	C	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;DP=100;Dels=0.00;FS=14.157;HaplotypeScore=25.7839;MLEAC=1;MLEAF=0.500;MQ=56.08;MQ0=1;MQRankSum=-3.263;QD=8.96;ReadPosRankSum=0.445;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,30:100:99:924,0,2374
+chr1	36361	.	G	A	2302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DP=91;Dels=0.00;FS=2.218;HaplotypeScore=4.6978;MLEAC=1;MLEAF=0.500;MQ=55.09;MQ0=1;MQRankSum=-4.586;QD=25.31;ReadPosRankSum=1.413;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,69:91:99:2331,0,612
+chr1	36362	.	T	G	3325.77	.	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9091;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=1;QD=32.06;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3354,250,0
+chr1	36377	.	A	G	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;DP=102;Dels=0.00;FS=10.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.49;MQ0=0;MQRankSum=-5.406;QD=9.55;ReadPosRankSum=-0.273;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:68,34:102:99:1002,0,2367
+chr1	36383	.	T	C	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;DP=103;Dels=0.00;FS=9.011;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.87;MQ0=0;MQRankSum=-6.104;QD=9.69;ReadPosRankSum=-0.757;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:67,36:103:99:1026,0,2320
+chr1	36393	.	G	A	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;DP=108;Dels=0.00;FS=2.766;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=52.35;MQ0=0;MQRankSum=-6.108;QD=8.56;ReadPosRankSum=-0.505;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,38:108:99:953,0,2423
+chr1	36408	.	C	T	2376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;DP=104;Dels=0.00;FS=4.359;HaplotypeScore=1.7886;MLEAC=1;MLEAF=0.500;MQ=51.96;MQ0=0;MQRankSum=-0.816;QD=22.85;ReadPosRankSum=-0.259;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:27,77:104:99:2405,0,763
+chr1	36427	.	A	T	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8148;MLEAC=1;MLEAF=0.500;MQ=51.50;MQ0=0;MQRankSum=-6.246;QD=6.56;ReadPosRankSum=2.278;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:66,28:94:99:645,0,2385
+chr1	36447	.	A	T	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;DP=107;Dels=0.00;FS=0.770;HaplotypeScore=3.5157;MLEAC=1;MLEAF=0.500;MQ=51.35;MQ0=0;MQRankSum=-6.584;QD=7.45;ReadPosRankSum=-0.880;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:72,35:107:99:825,0,2544
+chr1	36455	.	A	C	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=26.1134;MLEAC=1;MLEAF=0.500;MQ=51.36;MQ0=0;MQRankSum=-6.423;QD=7.65;ReadPosRankSum=-1.462;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:69,36:105:99:832,0,2482
+chr1	36464	.	A	C	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=48.2350;MLEAC=1;MLEAF=0.500;MQ=51.21;MQ0=0;MQRankSum=-2.154;QD=5.85;ReadPosRankSum=1.299;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:75,23:98:99:602,0,2428
+chr1	36466	.	C	T	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=27.3765;MLEAC=1;MLEAF=0.500;MQ=51.39;MQ0=0;MQRankSum=-7.882;QD=17.75;ReadPosRankSum=-0.964;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:37,59:96:99:1732,0,1115
+chr1	36483	.	A	G	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=51.61;MQ0=0;MQRankSum=-3.339;QD=5.65;ReadPosRankSum=0.429;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,21:91:99:542,0,2305
+chr1	36503	.	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=80.4897;MLEAC=1;MLEAF=0.500;MQ=50.33;MQ0=0;MQRankSum=-0.635;QD=0.59;ReadPosRankSum=3.118;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,9:86:79:79,0,2347
+chr1	36504	.	T	C	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=80.4897;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=0;MQRankSum=-2.130;QD=5.11;ReadPosRankSum=5.608;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:69,19:88:99:478,0,2018
+chr1	36505	.	T	C	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=79.0748;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=0;MQRankSum=-2.029;QD=4.27;ReadPosRankSum=5.211;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:71,17:88:99:404,0,2137
+chr1	36518	.	A	G	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.366;DP=101;Dels=0.00;FS=5.616;HaplotypeScore=12.9006;MLEAC=1;MLEAF=0.500;MQ=47.84;MQ0=0;MQRankSum=-1.467;QD=8.87;ReadPosRankSum=0.903;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:66,35:101:99:924,0,1480
+chr1	36532	.	C	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;DP=115;Dels=0.00;FS=1.129;HaplotypeScore=33.9847;MLEAC=1;MLEAF=0.500;MQ=49.03;MQ0=0;MQRankSum=2.072;QD=2.35;ReadPosRankSum=-1.765;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:100,15:115:99:298,0,2777
+chr1	36538	.	C	T	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;DP=114;Dels=0.00;FS=3.778;HaplotypeScore=31.9878;MLEAC=1;MLEAF=0.500;MQ=49.12;MQ0=0;MQRankSum=-8.542;QD=10.94;ReadPosRankSum=0.680;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:52,62:114:99:1275,0,1800
+chr1	36561	.	C	T	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DP=91;Dels=0.00;FS=7.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.43;MQ0=0;MQRankSum=-6.542;QD=10.96;ReadPosRankSum=0.491;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,33:91:99:1026,0,2069
+chr1	36566	.	G	A	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;DP=95;Dels=0.00;FS=7.431;HaplotypeScore=17.9938;MLEAC=1;MLEAF=0.500;MQ=54.20;MQ0=0;MQRankSum=-6.234;QD=10.17;ReadPosRankSum=-0.059;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,33:95:99:994,0,2189
+chr1	36574	.	G	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DP=93;Dels=0.00;FS=3.666;HaplotypeScore=36.9659;MLEAC=1;MLEAF=0.500;MQ=54.28;MQ0=0;MQRankSum=-1.444;QD=4.45;ReadPosRankSum=1.036;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:75,18:93:99:442,0,2629
+chr1	36578	.	G	A	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DP=83;Dels=0.00;FS=3.342;HaplotypeScore=35.9664;MLEAC=1;MLEAF=0.500;MQ=54.25;MQ0=0;MQRankSum=-5.365;QD=8.58;ReadPosRankSum=0.452;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,25:83:99:740,0,2021
+chr1	36581	.	A	G	2449.77	.	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=35.9664;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=24.99;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2478,187,0
+chr1	36582	.	G	A	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=35.9664;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-1.757;QD=7.39;ReadPosRankSum=1.154;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:46,17:63:99:494,0,1649
+chr1	36587	.	G	A	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DP=64;Dels=0.00;FS=1.061;HaplotypeScore=19.9719;MLEAC=1;MLEAF=0.500;MQ=53.79;MQ0=0;MQRankSum=-4.946;QD=8.75;ReadPosRankSum=-0.007;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:44,20:64:99:588,0,1587
+chr1	36594	.	C	T	1517.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=31.33;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1546,117,0
+chr1	36595	.	A	C	1513.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.96;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1542,120,0
+chr1	36601	.	T	C	1588.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=28.60;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1617,120,0
+chr1	36605	.	C	T	1541.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=34.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1570,117,0
+chr1	36616	.	C	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.18;MQ0=0;MQRankSum=-5.166;QD=11.34;ReadPosRankSum=-0.538;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:23,15:38:99:459,0,805
+chr1	36621	.	T	C	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;DP=36;Dels=0.00;FS=1.421;HaplotypeScore=1.9985;MLEAC=1;MLEAF=0.500;MQ=56.02;MQ0=0;MQRankSum=-4.460;QD=12.77;ReadPosRankSum=-1.412;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,15:36:99:488,0,751
+chr1	36626	.	C	T	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;DP=67;Dels=0.00;FS=6.207;HaplotypeScore=1.9985;MLEAC=1;MLEAF=0.500;MQ=53.11;MQ0=0;MQRankSum=-2.986;QD=5.41;ReadPosRankSum=0.609;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:52,15:67:99:391,0,1838
+chr1	36630	.	T	C	2560.77	.	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.9985;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=32.76;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2589,196,0
+chr1	36644	.	A	G	2044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=14.7297;MLEAC=1;MLEAF=0.500;MQ=53.58;MQ0=0;MQRankSum=-4.784;QD=26.56;ReadPosRankSum=-3.027;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:18,59:77:99:2073,0,508
+chr1	36651	.	C	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;DP=75;Dels=0.00;FS=2.457;HaplotypeScore=29.6893;MLEAC=1;MLEAF=0.500;MQ=53.83;MQ0=0;MQRankSum=-2.272;QD=4.60;ReadPosRankSum=-2.563;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:60,15:75:99:373,0,2131
+chr1	36656	.	T	C	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=16.6941;MLEAC=1;MLEAF=0.500;MQ=54.41;MQ0=0;MQRankSum=-3.172;QD=3.11;ReadPosRankSum=2.792;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:66,14:80:99:277,0,2375
+chr1	36662	.	A	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=33.6895;MLEAC=1;MLEAF=0.500;MQ=55.48;MQ0=0;MQRankSum=-1.103;QD=5.30;ReadPosRankSum=-1.807;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,17:80:99:452,0,2194
+chr1	36667	.	A	G	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;DP=88;Dels=0.00;FS=6.014;HaplotypeScore=19.7292;MLEAC=1;MLEAF=0.500;MQ=55.49;MQ0=0;MQRankSum=-3.331;QD=17.87;ReadPosRankSum=3.641;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:40,48:88:99:1601,0,1351
+chr1	36673	.	G	T	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190;DP=87;Dels=0.00;FS=6.027;HaplotypeScore=50.6295;MLEAC=1;MLEAF=0.500;MQ=55.85;MQ0=0;MQRankSum=-3.286;QD=17.50;ReadPosRankSum=4.171;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,46:87:99:1551,0,1404
+chr1	36679	.	G	A,C	994.29	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.028;DP=83;Dels=0.00;FS=6.491;HaplotypeScore=3.6668;MLEAC=1,1;MLEAF=0.500,0.500;MQ=55.79;MQ0=0;MQRankSum=-3.906;QD=11.98;ReadPosRankSum=3.497;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/2:18,20,45:83:99:1681,965,1561,114,0,635
+chr1	36680	.	G	T	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;DP=83;Dels=0.00;FS=1.073;HaplotypeScore=37.6485;MLEAC=1;MLEAF=0.500;MQ=55.81;MQ0=0;MQRankSum=0.921;QD=6.54;ReadPosRankSum=1.102;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,20:83:99:571,0,2139
+chr1	36681	.	C	A	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.220;DP=83;Dels=0.00;FS=2.291;HaplotypeScore=37.6485;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=0;MQRankSum=0.648;QD=6.82;ReadPosRankSum=0.977;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:61,21:83:99:594,0,2067
+chr1	36692	.	C	T	2055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;DP=84;Dels=0.00;FS=1.085;HaplotypeScore=21.9809;MLEAC=1;MLEAF=0.500;MQ=56.56;MQ0=0;MQRankSum=-2.422;QD=24.47;ReadPosRankSum=2.614;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:20,63:83:99:2084,0,534
+chr1	36698	.	C	A	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DP=83;Dels=0.00;FS=8.813;HaplotypeScore=18.7747;MLEAC=1;MLEAF=0.500;MQ=56.60;MQ0=0;MQRankSum=0.221;QD=9.43;ReadPosRankSum=1.595;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:57,26:83:99:811,0,1969
+chr1	36713	.	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DP=86;Dels=0.00;FS=1.174;HaplotypeScore=17.5182;MLEAC=1;MLEAF=0.500;MQ=57.16;MQ0=0;MQRankSum=-5.106;QD=3.24;ReadPosRankSum=1.351;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:72,14:86:99:307,0,2592
+chr1	36714	.	G	A	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DP=86;Dels=0.00;FS=13.988;HaplotypeScore=17.5182;MLEAC=1;MLEAF=0.500;MQ=57.16;MQ0=0;MQRankSum=-2.103;QD=14.69;ReadPosRankSum=-0.913;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:46,39:86:99:1292,0,1579
+chr1	36726	.	G	A	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DP=93;Dels=0.00;FS=12.102;HaplotypeScore=22.7149;MLEAC=1;MLEAF=0.500;MQ=57.37;MQ0=0;MQRankSum=2.213;QD=7.48;ReadPosRankSum=0.355;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:67,26:93:99:724,0,2287
+chr1	36731	.	A	G	2521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;DP=95;Dels=0.00;FS=2.183;HaplotypeScore=22.5037;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=-1.447;QD=26.54;ReadPosRankSum=-2.098;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:19,76:95:99:2550,0,452
+chr1	36745	.	C	G	1591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;DP=97;Dels=0.00;FS=21.761;HaplotypeScore=2.1877;MLEAC=1;MLEAF=0.500;MQ=57.21;MQ0=0;MQRankSum=-3.929;QD=16.41;ReadPosRankSum=1.490;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1620,0,1518
+chr1	36764	.	T	C	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;DP=75;Dels=0.00;FS=17.360;HaplotypeScore=3.9991;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=-2.794;QD=15.05;ReadPosRankSum=4.475;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,34:75:99:1157,0,1382
+chr1	36765	.	T	G	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;DP=75;Dels=0.00;FS=14.729;HaplotypeScore=3.9991;MLEAC=1;MLEAF=0.500;MQ=57.31;MQ0=0;MQRankSum=-2.439;QD=14.36;ReadPosRankSum=4.542;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,33:75:99:1105,0,1430
+chr1	36767	.	T	C	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DP=76;Dels=0.00;FS=14.305;HaplotypeScore=3.9991;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=-2.429;QD=15.77;ReadPosRankSum=3.761;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:40,36:76:99:1227,0,1335
+chr1	36796	.	G	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=22.8300;MLEAC=1;MLEAF=0.500;MQ=55.32;MQ0=0;MQRankSum=-6.512;QD=3.92;ReadPosRankSum=0.721;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,23:100:99:420,0,2683
+chr1	36817	.	A	G	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149;DP=101;Dels=0.00;FS=1.617;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=55.03;MQ0=0;MQRankSum=-2.941;QD=12.65;ReadPosRankSum=0.673;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:56,45:101:99:1306,0,1931
+chr1	36850	.	G	A	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=113;Dels=0.00;FS=1.797;HaplotypeScore=42.9345;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=0;MQRankSum=2.503;QD=6.50;ReadPosRankSum=-0.736;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:84,28:113:99:763,0,2839
+chr1	36857	.	T	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;DP=112;Dels=0.00;FS=6.385;HaplotypeScore=44.9514;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=0;MQRankSum=-0.969;QD=4.13;ReadPosRankSum=-0.119;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:91,21:112:99:491,0,3074
+chr1	36860	.	T	A	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;DP=112;Dels=0.00;FS=10.516;HaplotypeScore=64.8364;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=0;MQRankSum=0.143;QD=17.06;ReadPosRankSum=-0.750;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:52,60:112:99:1939,0,1715
+chr1	36867	.	T	C	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;DP=115;Dels=0.00;FS=2.674;HaplotypeScore=43.9466;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=1;MQRankSum=0.637;QD=7.66;ReadPosRankSum=-0.031;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:81,34:115:99:909,0,2706
+chr1	36869	.	A	G	1776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;DP=112;Dels=0.00;FS=8.872;HaplotypeScore=21.9682;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=1;MQRankSum=0.192;QD=15.86;ReadPosRankSum=0.156;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:57,55:112:99:1805,0,1829
+chr1	36898	.	T	G	3694.77	.	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=1;QD=33.37;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3723,283,0
+chr1	36921	.	G	A	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;DP=105;Dels=0.00;FS=1.642;HaplotypeScore=58.3901;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=1;MQRankSum=0.967;QD=10.44;ReadPosRankSum=0.680;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:68,37:105:99:1124,0,2298
+chr1	36924	.	T	C	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;DP=104;Dels=0.01;FS=11.095;HaplotypeScore=64.0672;MLEAC=1;MLEAF=0.500;MQ=57.91;MQ0=1;MQRankSum=-0.152;QD=6.57;ReadPosRankSum=0.341;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:76,27:103:99:711,0,2625
+chr1	36928	.	T	A	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DP=101;Dels=0.01;FS=13.977;HaplotypeScore=62.9043;MLEAC=1;MLEAF=0.500;MQ=57.71;MQ0=1;MQRankSum=-0.447;QD=6.57;ReadPosRankSum=0.382;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,26:100:99:692,0,2509
+chr1	36933	.	A	G	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;DP=98;Dels=0.00;FS=1.634;HaplotypeScore=39.9143;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=1;MQRankSum=3.401;QD=17.77;ReadPosRankSum=-0.070;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:44,53:98:99:1770,0,1349
+chr1	36937	.	C	T	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;DP=96;Dels=0.00;FS=1.678;HaplotypeScore=21.5624;MLEAC=1;MLEAF=0.500;MQ=56.75;MQ0=1;MQRankSum=-2.005;QD=13.36;ReadPosRankSum=-0.139;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:54,42:96:99:1311,0,1753
+chr1	36951	.	A	G	3101.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.536;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9494;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=2;MQRankSum=1.691;QD=31.53;ReadPosRankSum=-1.402;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:1,85:86:99:3130,247,0
+chr1	36957	.	A	G	3098.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.648;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=2;MQRankSum=1.690;QD=28.09;ReadPosRankSum=-1.605;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:1,83:84:99:3127,241,0
+chr1	36980	.	G	C	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;DP=87;Dels=0.00;FS=5.532;HaplotypeScore=19.2784;MLEAC=1;MLEAF=0.500;MQ=50.04;MQ0=1;MQRankSum=-2.668;QD=4.49;ReadPosRankSum=1.236;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UPSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,17:87:99:419,0,2324
+chr1	36986	.	G	A,T	2608.29	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=1,1;MLEAF=0.500,0.500;MQ=49.63;MQ0=1;MQRankSum=-0.418;QD=29.64;ReadPosRankSum=-1.015;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	1/2:1,37,50:88:99:2946,1693,1587,1253,0,1106
+chr1	36990	.	C	T	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DP=88;Dels=0.00;FS=11.050;HaplotypeScore=16.5790;MLEAC=1;MLEAF=0.500;MQ=49.22;MQ0=1;MQRankSum=-2.013;QD=12.11;ReadPosRankSum=-0.219;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:50,38:88:99:1094,0,1532
+chr1	37033	.	C	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;DP=97;Dels=0.00;FS=29.507;HaplotypeScore=60.3467;MLEAC=1;MLEAF=0.500;MQ=44.66;MQ0=1;MQRankSum=1.751;QD=5.93;ReadPosRankSum=-1.433;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:74,23:97:99:603,0,2295
+chr1	37035	.	G	A	1683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;DP=95;Dels=0.00;FS=32.836;HaplotypeScore=60.3467;MLEAC=1;MLEAF=0.500;MQ=44.62;MQ0=1;MQRankSum=-1.237;QD=17.72;ReadPosRankSum=0.597;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:39,56:95:99:1712,0,1110
+chr1	37086	.	T	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DP=83;Dels=0.00;FS=8.748;HaplotypeScore=15.4050;MLEAC=1;MLEAF=0.500;MQ=40.57;MQ0=1;MQRankSum=0.495;QD=6.67;ReadPosRankSum=-0.464;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:60,23:83:99:582,0,1632
+chr1	37098	.	G	A	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.373;DP=78;Dels=0.00;FS=22.975;HaplotypeScore=17.1337;MLEAC=1;MLEAF=0.500;MQ=38.80;MQ0=1;MQRankSum=2.695;QD=3.33;ReadPosRankSum=0.521;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:63,15:78:99:288,0,1577
+chr1	37106	.	A	C	1959.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.8922;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=1;MQRankSum=-0.247;QD=27.60;ReadPosRankSum=0.247;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),START_GAINED(LOW||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1988,143,0
+chr1	37110	.	G	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DP=70;Dels=0.00;FS=20.054;HaplotypeScore=6.6058;MLEAC=1;MLEAF=0.500;MQ=37.34;MQ0=1;MQRankSum=2.417;QD=3.65;ReadPosRankSum=-0.867;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:57,13:70:99:284,0,1351
+chr1	37144	.	C	T	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.027;DP=75;Dels=0.01;FS=19.781;HaplotypeScore=21.1656;MLEAC=1;MLEAF=0.500;MQ=34.13;MQ0=5;MQRankSum=0.880;QD=7.64;ReadPosRankSum=0.119;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:49,25:74:99:601,0,1238
+chr1	37145	.	G	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;DP=74;Dels=0.00;FS=1.342;HaplotypeScore=17.3626;MLEAC=1;MLEAF=0.500;MQ=33.28;MQ0=5;MQRankSum=-1.467;QD=1.58;ReadPosRankSum=0.549;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),START_GAINED(LOW||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:63,11:74:99:145,0,1687
+chr1	37146	.	T	C	1981.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.057;DP=73;Dels=0.00;FS=1.906;HaplotypeScore=17.3626;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=5;MQRankSum=0.070;QD=27.15;ReadPosRankSum=-0.023;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	1/1:8,65:73:96:2010,96,0
+chr1	37167	.	A	G	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.120;DP=75;Dels=0.00;FS=11.212;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=30.73;MQ0=5;MQRankSum=-0.123;QD=11.62;ReadPosRankSum=0.029;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),UTR_5_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:37,38:75:99:900,0,875
+chr1	37195	.	A	C	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;DP=63;Dels=0.00;FS=34.326;HaplotypeScore=4.2993;MLEAC=1;MLEAF=0.500;MQ=30.86;MQ0=6;MQRankSum=0.788;QD=4.57;ReadPosRankSum=1.858;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|acA/acC|T7|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:47,16:63:99:316,0,1127
+chr1	37208	.	A	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DP=59;Dels=0.00;FS=17.669;HaplotypeScore=1.7335;MLEAC=1;MLEAF=0.500;MQ=30.82;MQ0=6;MQRankSum=0.988;QD=3.18;ReadPosRankSum=-1.371;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|Aga/Cga|R12|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:47,12:59:99:216,0,1075
+chr1	37234	.	A	G	585.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=5;QD=18.90;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|ccA/ccG|P20|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	1/1:0,31:31:66:614,66,0
+chr1	37263	.	G	T	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=28.54;MQ0=4;MQRankSum=-0.748;QD=15.24;ReadPosRankSum=-0.169;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGc/cTc|R30L|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:10,26:36:99:577,0,117
+chr1	37277	.	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;DP=37;Dels=0.00;FS=1.773;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=34.79;MQ0=3;MQRankSum=-0.596;QD=2.86;ReadPosRankSum=0.085;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gac/Aac|D35N|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:27,10:37:99:134,0,662
+chr1	37288	.	G	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.7802;MLEAC=1;MLEAF=0.500;MQ=39.98;MQ0=2;MQRankSum=-1.717;QD=2.72;ReadPosRankSum=0.610;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaG/gaT|E38D|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:36,11:47:99:156,0,970
+chr1	37303	.	G	A,T	1674.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.9926;MLEAC=1,1;MLEAF=0.500,0.500;MQ=46.60;MQ0=1;QD=26.16;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caG/caT|Q43H|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621),SYNONYMOUS_CODING(LOW|SILENT|caG/caA|Q43|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	1/2:0,54,10:64:99:1936,347,200,1589,0,1559
+chr1	37305	.	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=23.7316;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=1;MQRankSum=-3.229;QD=1.45;ReadPosRankSum=2.225;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTc/gCc|V44A|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:58,11:69:99:128,0,1781
+chr1	37314	.	T	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;DP=80;Dels=0.00;FS=1.179;HaplotypeScore=13.7857;MLEAC=1;MLEAF=0.500;MQ=48.12;MQ0=1;MQRankSum=1.805;QD=2.56;ReadPosRankSum=-1.395;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTc/aCc|I47T|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:67,13:80:99:233,0,1973
+chr1	37336	.	T	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.6540;MLEAC=1;MLEAF=0.500;MQ=48.95;MQ0=0;MQRankSum=2.094;QD=8.05;ReadPosRankSum=0.313;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|gaT/gaC|D54|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:68,31:99:99:825,0,2213
+chr1	37361	.	C	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;DP=104;Dels=0.00;FS=2.268;HaplotypeScore=5.3893;MLEAC=1;MLEAF=0.500;MQ=47.39;MQ0=6;MQRankSum=-1.098;QD=2.63;ReadPosRankSum=1.192;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ccc/Acc|P63T|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:85,19:104:99:302,0,2484
+chr1	37404	.	C	T	1818.77	.	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=7;QD=27.98;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tCc/tTc|S77F|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1847,159,0
+chr1	37414	.	C	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;DP=53;Dels=0.00;FS=5.282;HaplotypeScore=6.9624;MLEAC=1;MLEAF=0.500;MQ=36.19;MQ0=7;MQRankSum=0.103;QD=3.94;ReadPosRankSum=-1.803;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|ccC/ccA|P80|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:40,13:53:99:237,0,933
+chr1	37420	.	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.8162;MLEAC=1;MLEAF=0.500;MQ=30.80;MQ0=7;MQRankSum=-0.141;QD=2.92;ReadPosRankSum=-0.424;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|gcG/gcA|A82|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:30,10:40:99:145,0,591
+chr1	37458	.	C	T	161.8	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.06;MQ0=0;QD=12.45;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gCa/gTa|A95V|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	1/1:0,13:13:21:190,21,0
+chr1	37459	.	A	G	199.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=0;QD=14.27;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|gcA/gcG|A95|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	1/1:0,14:14:24:228,24,0
+chr1	37480	.	C	T	25.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=6.5977;MLEAC=1;MLEAF=0.500;MQ=28.74;MQ0=1;MQRankSum=-3.019;QD=0.74;ReadPosRankSum=-1.877;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|gtC/gtT|V102|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:24,11:35:54:54,0,540
+chr1	37528	.	A	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;DP=99;Dels=0.00;FS=1.426;HaplotypeScore=2.0463;MLEAC=1;MLEAF=0.500;MQ=31.63;MQ0=3;MQRankSum=-2.642;QD=0.76;ReadPosRankSum=1.338;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaA/gaT|E118D|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:80,19:99:99:103,0,1690
+chr1	37553	.	C	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DP=101;Dels=0.00;FS=0.817;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=32.94;MQ0=5;MQRankSum=-4.815;QD=2.51;ReadPosRankSum=1.481;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|Ctg/Ttg|L127|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:66,35:101:99:282,0,1683
+chr1	37602	.	C	G	2282.77	.	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=5;QD=30.04;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tCt/tGt|S143C|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2311,186,0
+chr1	37607	.	T	G	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;DP=74;Dels=0.00;FS=8.462;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=38.66;MQ0=5;MQRankSum=0.654;QD=9.08;ReadPosRankSum=1.289;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tta/Gta|L145V|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_36982_37621)	GT:AD:DP:GQ:PL	0/1:43,31:74:99:700,0,1242
+chr1	37632	.	T	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;DP=70;Dels=0.00;FS=1.067;HaplotypeScore=165.3085;MLEAC=1;MLEAF=0.500;MQ=39.01;MQ0=2;MQRankSum=-0.738;QD=5.55;ReadPosRankSum=0.355;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,19:70:99:417,0,1466
+chr1	37654	.	T	C	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;DP=79;Dels=0.00;FS=1.038;HaplotypeScore=60.4783;MLEAC=1;MLEAF=0.500;MQ=40.53;MQ0=0;MQRankSum=-1.554;QD=4.24;ReadPosRankSum=1.348;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:60,19:79:99:363,0,1794
+chr1	37679	.	T	C	13.95	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;DP=69;Dels=0.01;FS=3.415;HaplotypeScore=131.3512;MLEAC=1;MLEAF=0.500;MQ=36.89;MQ0=2;MQRankSum=0.051;QD=0.20;ReadPosRankSum=-0.256;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:61,7:68:42:42,0,1556
+chr1	37687	.	A	G	1378.77	.	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=69.8232;MLEAC=2;MLEAF=1.00;MQ=34.79;MQ0=2;QD=20.89;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1407,129,0
+chr1	37807	.	C	T	3962.77	.	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=1;QD=33.77;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3991,313,0
+chr1	37815	.	A	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DP=107;Dels=0.00;FS=2.466;HaplotypeScore=2.4531;MLEAC=1;MLEAF=0.500;MQ=51.69;MQ0=1;MQRankSum=2.701;QD=2.40;ReadPosRankSum=1.477;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:92,15:107:99:285,0,3245
+chr1	37819	.	A	G	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;DP=106;Dels=0.00;FS=2.428;HaplotypeScore=49.4245;MLEAC=1;MLEAF=0.500;MQ=51.67;MQ0=2;MQRankSum=3.086;QD=2.82;ReadPosRankSum=0.635;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:90,16:106:99:327,0,3127
+chr1	37827	.	T	C	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=281.8552;MLEAC=1;MLEAF=0.500;MQ=52.18;MQ0=2;MQRankSum=-1.196;QD=9.12;ReadPosRankSum=1.231;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:69,36:105:99:986,0,2427
+chr1	37829	.	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;DP=103;Dels=0.00;FS=1.099;HaplotypeScore=280.8554;MLEAC=1;MLEAF=0.500;MQ=52.15;MQ0=2;MQRankSum=-5.390;QD=2.67;ReadPosRankSum=-1.865;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:87,16:103:99:303,0,3052
+chr1	37845	.	C	G	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;DP=105;Dels=0.00;FS=1.721;HaplotypeScore=34.8876;MLEAC=1;MLEAF=0.500;MQ=54.33;MQ0=2;MQRankSum=-0.287;QD=12.40;ReadPosRankSum=0.867;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:61,43:105:99:1330,0,2039
+chr1	37852	.	A	T	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;DP=114;Dels=0.00;FS=7.406;HaplotypeScore=34.8876;MLEAC=1;MLEAF=0.500;MQ=54.31;MQ0=2;MQRankSum=1.342;QD=6.74;ReadPosRankSum=0.485;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:85,29:114:99:797,0,2971
+chr1	37858	.	G	T	4069.77	.	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=2;QD=28.48;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,106:106:99:4098,313,0
+chr1	37891	.	A	G	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;DP=105;Dels=0.00;FS=3.911;HaplotypeScore=2.7884;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=1;MQRankSum=1.160;QD=3.39;ReadPosRankSum=-1.283;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:88,17:105:99:384,0,3122
+chr1	37931	.	T	C	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;DP=94;Dels=0.00;FS=6.552;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=0;MQRankSum=3.443;QD=5.77;ReadPosRankSum=-0.138;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:72,22:94:99:571,0,2560
+chr1	37938	.	T	G	3392.77	.	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=30.74;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3421,259,0
+chr1	37969	.	A	G	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;DP=52;Dels=0.00;FS=4.310;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=57.18;MQ0=0;MQRankSum=-4.200;QD=11.26;ReadPosRankSum=1.292;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:33,19:52:99:614,0,1176
+chr1	37972	.	A	G	2052.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.3111;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=26.29;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,52:53:99:2081,154,0
+chr1	37991	.	G	C	2025.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=27.65;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2054,153,0
+chr1	37996	.	T	C	1956.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=28.77;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1985,147,0
+chr1	37999	.	A	T	1924.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=43.32;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1953,144,0
+chr1	38000	.	T	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;DP=50;Dels=0.00;FS=9.868;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=-4.276;QD=8.80;ReadPosRankSum=-0.402;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:35,15:50:99:468,0,1240
+chr1	38009	.	A	C	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;DP=62;Dels=0.00;FS=21.281;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-2.304;QD=13.03;ReadPosRankSum=-3.245;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:36,26:62:99:836,0,1230
+chr1	38043	.	C	T	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;DP=66;Dels=0.00;FS=22.795;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.05;MQ0=0;MQRankSum=1.867;QD=15.45;ReadPosRankSum=-2.508;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:34,32:66:99:1048,0,1191
+chr1	38145	.	C	A	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.426;DP=22;Dels=0.00;FS=4.506;HaplotypeScore=20.3295;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=1.195;QD=18.67;ReadPosRankSum=-0.253;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:9,13:22:99:439,0,169
+chr1	38190	.	A	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;DP=20;Dels=0.00;FS=37.992;HaplotypeScore=15.6751;MLEAC=1;MLEAF=0.500;MQ=57.69;MQ0=0;MQRankSum=-3.279;QD=16.94;ReadPosRankSum=0.964;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:8,12:20:99:367,0,253
+chr1	38209	.	G	T	1079.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=30.38;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1108,84,0
+chr1	38232	.	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;DP=26;Dels=0.00;FS=45.405;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=0;MQRankSum=-4.243;QD=19.84;ReadPosRankSum=-2.451;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:10,16:26:99:544,0,277
+chr1	38259	.	T	A	394.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=32.90;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:33:423,33,0
+chr1	38267	.	C	T	397.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=23.22;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:33:426,33,0
+chr1	38269	.	G	C	393.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=28.35;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:33:422,33,0
+chr1	38272	.	G	A	407.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=24.18;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:33:436,33,0
+chr1	38282	.	G	A	562.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=27.51;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:45:591,45,0
+chr1	38290	.	T	G	1662.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=30.29;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1691,132,0
+chr1	38305	.	A	G	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;DP=54;Dels=0.00;FS=1.164;HaplotypeScore=26.0834;MLEAC=1;MLEAF=0.500;MQ=51.26;MQ0=0;MQRankSum=-0.232;QD=7.13;ReadPosRankSum=-0.521;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,15:54:99:413,0,1363
+chr1	38320	.	T	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;DP=61;Dels=0.00;FS=5.712;HaplotypeScore=186.2137;MLEAC=1;MLEAF=0.500;MQ=52.26;MQ0=0;MQRankSum=2.727;QD=8.73;ReadPosRankSum=0.530;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,20:61:99:561,0,1414
+chr1	38327	.	A	G	2319.77	.	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=146.9227;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=29.98;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,61:63:99:2348,184,0
+chr1	38332	.	G	C	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;DP=64;Dels=0.00;FS=1.052;HaplotypeScore=20.8715;MLEAC=1;MLEAF=0.500;MQ=53.66;MQ0=0;MQRankSum=3.453;QD=7.42;ReadPosRankSum=-2.851;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,19:64:99:503,0,1580
+chr1	38333	.	G	A	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=20.8715;MLEAC=1;MLEAF=0.500;MQ=53.77;MQ0=0;MQRankSum=-3.324;QD=11.43;ReadPosRankSum=2.259;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:40,25:65:99:771,0,1350
+chr1	38335	.	C	T	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.608;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=19.8719;MLEAC=1;MLEAF=0.500;MQ=53.87;MQ0=0;MQRankSum=-3.117;QD=12.89;ReadPosRankSum=1.435;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,27:66:99:879,0,1194
+chr1	38344	.	C	T	2874.77	.	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=36.8803;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=32.41;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2903,220,0
+chr1	38350	.	G	A	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=33.7387;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=2.904;QD=7.78;ReadPosRankSum=-0.189;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:65,26:91:99:736,0,2251
+chr1	38352	.	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;DP=91;Dels=0.00;FS=0.951;HaplotypeScore=33.7387;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=3.445;QD=5.45;ReadPosRankSum=0.283;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:71,20:91:99:524,0,2399
+chr1	38354	.	A	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;DP=92;Dels=0.00;FS=1.151;HaplotypeScore=33.7387;MLEAC=1;MLEAF=0.500;MQ=55.08;MQ0=0;MQRankSum=0.796;QD=1.80;ReadPosRankSum=-3.990;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:79,13:92:99:194,0,2761
+chr1	38356	.	C	T	3570.77	.	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=33.7339;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=30.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3599,268,0
+chr1	38380	.	G	C	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DP=103;Dels=0.00;FS=1.016;HaplotypeScore=5.5532;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=0;MQRankSum=0.452;QD=3.40;ReadPosRankSum=1.646;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:84,18:103:99:378,0,2986
+chr1	38386	.	A	G	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;DP=101;Dels=0.00;FS=2.163;HaplotypeScore=5.8191;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=1.265;QD=4.05;ReadPosRankSum=2.205;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:83,18:101:99:437,0,2897
+chr1	38406	.	A	G	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;DP=110;Dels=0.00;FS=0.886;HaplotypeScore=38.9762;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=2.927;QD=5.29;ReadPosRankSum=1.393;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:86,24:110:99:610,0,2961
+chr1	38410	.	G	C	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;DP=107;Dels=0.00;FS=5.387;HaplotypeScore=39.9755;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=1.092;QD=8.61;ReadPosRankSum=-0.534;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:75,32:107:99:949,0,2628
+chr1	38412	.	A	G	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DP=107;Dels=0.00;FS=1.876;HaplotypeScore=39.9755;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.410;QD=5.99;ReadPosRankSum=-0.171;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),INTRON(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:81,26:107:99:669,0,2864
+chr1	38514	.	A	G	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DP=93;Dels=0.00;FS=5.348;HaplotypeScore=43.8521;MLEAC=1;MLEAF=0.500;MQ=49.76;MQ0=0;MQRankSum=-1.505;QD=3.79;ReadPosRankSum=1.100;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Att/Gtt|I168V|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:73,19:93:99:381,0,2418
+chr1	38516	.	T	G	3066.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.284;DP=85;Dels=0.00;FS=3.166;HaplotypeScore=43.8875;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=-0.509;QD=31.58;ReadPosRankSum=1.528;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atT/atG|I168M|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:1,84:85:99:3095,218,0
+chr1	38519	.	A	C	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;DP=83;Dels=0.00;FS=18.028;HaplotypeScore=44.8742;MLEAC=1;MLEAF=0.500;MQ=49.02;MQ0=0;MQRankSum=-2.301;QD=15.17;ReadPosRankSum=1.618;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|gcA/gcC|A169|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1287,0,1261
+chr1	38524	.	G	T	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DP=87;Dels=0.00;FS=8.398;HaplotypeScore=47.8556;MLEAC=1;MLEAF=0.500;MQ=48.63;MQ0=0;MQRankSum=0.082;QD=6.37;ReadPosRankSum=1.506;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gGt/gTt|G171V|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:64,23:87:99:582,0,2000
+chr1	38580	.	G	A	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.789;DP=83;Dels=0.00;FS=10.079;HaplotypeScore=4.2557;MLEAC=1;MLEAF=0.500;MQ=42.00;MQ0=0;MQRankSum=1.229;QD=9.35;ReadPosRankSum=-1.305;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gcc/Acc|A190T|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:49,33:83:99:804,0,1512
+chr1	38614	.	G	T	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;DP=88;Dels=0.00;FS=8.617;HaplotypeScore=41.5773;MLEAC=1;MLEAF=0.500;MQ=46.09;MQ0=0;MQRankSum=-1.852;QD=7.99;ReadPosRankSum=-1.550;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGc/cTc|R201L|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:62,26:88:99:731,0,1964
+chr1	38616	.	C	T	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;DP=88;Dels=0.00;FS=3.034;HaplotypeScore=74.9440;MLEAC=1;MLEAF=0.500;MQ=46.09;MQ0=0;MQRankSum=2.195;QD=14.77;ReadPosRankSum=0.534;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|Ctg/Ttg|L202|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1328,0,1423
+chr1	38621	.	C	T	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;DP=92;Dels=0.00;FS=8.548;HaplotypeScore=74.6108;MLEAC=1;MLEAF=0.500;MQ=45.88;MQ0=0;MQRankSum=-2.005;QD=6.60;ReadPosRankSum=-1.676;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|aaC/aaT|N203|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:68,24:92:99:635,0,2194
+chr1	38624	.	T	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;DP=92;Dels=0.00;FS=18.358;HaplotypeScore=71.5984;MLEAC=1;MLEAF=0.500;MQ=45.57;MQ0=0;MQRankSum=-0.682;QD=4.52;ReadPosRankSum=0.966;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|gcT/gcC|A204|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:70,22:92:99:444,0,2305
+chr1	38633	.	G	A	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.729;DP=93;Dels=0.00;FS=4.284;HaplotypeScore=20.6300;MLEAC=1;MLEAF=0.500;MQ=46.35;MQ0=0;MQRankSum=1.841;QD=14.61;ReadPosRankSum=0.784;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|ccG/ccA|P207|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:42,51:93:99:1387,0,1217
+chr1	38643	.	A	G	1710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;DP=96;Dels=0.00;FS=1.832;HaplotypeScore=4.1979;MLEAC=1;MLEAF=0.500;MQ=45.75;MQ0=0;MQRankSum=1.806;QD=17.82;ReadPosRankSum=1.333;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Acg/Gcg|T211A|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:42,54:96:99:1739,0,1020
+chr1	38657	.	C	T	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;DP=85;Dels=0.00;FS=2.540;HaplotypeScore=14.1583;MLEAC=1;MLEAF=0.500;MQ=45.85;MQ0=1;MQRankSum=1.974;QD=26.04;ReadPosRankSum=1.050;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|caC/caT|H215|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:15,70:85:99:2242,0,177
+chr1	38659	.	A	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;DP=83;Dels=0.00;FS=9.582;HaplotypeScore=13.1589;MLEAC=1;MLEAF=0.500;MQ=45.81;MQ0=1;MQRankSum=1.020;QD=5.08;ReadPosRankSum=-0.265;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAa/gCa|E216A|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:63,20:83:99:450,0,1930
+chr1	38708	.	T	C	1093.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.976;DP=42;Dels=0.00;FS=2.564;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.86;MQ0=2;MQRankSum=1.592;QD=26.04;ReadPosRankSum=0.103;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|gaT/gaC|D232|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:3,39:42:29:1122,29,0
+chr1	38723	.	C	T	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.5678;MLEAC=1;MLEAF=0.500;MQ=34.19;MQ0=2;MQRankSum=1.958;QD=16.83;ReadPosRankSum=-0.432;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|tcC/tcT|S237|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:8,22:30:76:533,0,76
+chr1	38732	.	C	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;DP=25;Dels=0.00;FS=2.077;HaplotypeScore=8.5290;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=2;MQRankSum=1.921;QD=7.63;ReadPosRankSum=-1.354;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|ttC/ttT|F240|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:16,9:25:99:219,0,204
+chr1	38739	.	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;DP=21;Dels=0.00;FS=14.564;HaplotypeScore=7.2577;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=2;MQRankSum=1.056;QD=11.42;ReadPosRankSum=-1.648;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Acg/Gcg|T243A|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:7,14:21:61:268,0,61
+chr1	38754	.	C	T	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=27;Dels=0.00;FS=23.314;HaplotypeScore=3.4383;MLEAC=1;MLEAF=0.500;MQ=24.11;MQ0=1;MQRankSum=1.291;QD=6.03;ReadPosRankSum=-0.501;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|Ctg/Ttg|L248|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:17,10:27:99:191,0,164
+chr1	38813	.	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;DP=45;Dels=0.00;FS=10.745;HaplotypeScore=6.7165;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=6;MQRankSum=0.418;QD=3.44;ReadPosRankSum=-0.933;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|acG/acA|T267|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:30,14:45:99:183,0,334
+chr1	38818	.	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;DP=44;Dels=0.00;FS=36.491;HaplotypeScore=10.4483;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=6;MQRankSum=2.543;QD=5.45;ReadPosRankSum=-1.545;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tGt/tAt|C269Y|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:32,12:44:99:268,0,339
+chr1	38827	.	G	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;DP=48;Dels=0.00;FS=16.528;HaplotypeScore=14.4027;MLEAC=1;MLEAF=0.500;MQ=23.16;MQ0=7;MQRankSum=0.544;QD=3.04;ReadPosRankSum=1.045;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGc/cTc|R272L|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:34,14:48:99:174,0,437
+chr1	38828	.	C	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.199;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=14.4027;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=7;MQRankSum=1.593;QD=10.36;ReadPosRankSum=0.039;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|cgC/cgT|R272|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:16,33:49:99:536,0,103
+chr1	38834	.	G	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DP=50;Dels=0.00;FS=1.394;HaplotypeScore=10.1537;MLEAC=1;MLEAF=0.500;MQ=24.71;MQ0=8;MQRankSum=0.472;QD=5.02;ReadPosRankSum=0.341;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|cgG/cgA|R274|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:32,18:50:99:279,0,381
+chr1	38874	.	G	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=9.5155;MLEAC=1;MLEAF=0.500;MQ=24.48;MQ0=8;MQRankSum=-0.446;QD=6.30;ReadPosRankSum=0.875;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V288M|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:299,0,317
+chr1	38881	.	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;DP=41;Dels=0.00;FS=18.266;HaplotypeScore=21.0278;MLEAC=1;MLEAF=0.500;MQ=26.69;MQ0=6;MQRankSum=0.334;QD=1.80;ReadPosRankSum=-1.159;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tGc/tAc|C290Y|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:30,11:41:99:102,0,593
+chr1	38886	.	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;DP=42;Dels=0.00;FS=1.336;HaplotypeScore=14.7997;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=6;MQRankSum=0.652;QD=4.83;ReadPosRankSum=2.026;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtc/Atc|V292I|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:31,11:42:99:231,0,490
+chr1	38927	.	G	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;DP=30;Dels=0.00;FS=1.455;HaplotypeScore=5.5545;MLEAC=1;MLEAF=0.500;MQ=33.39;MQ0=1;MQRankSum=-0.895;QD=9.99;ReadPosRankSum=0.458;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|ggG/ggA|G305|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:15,15:30:99:328,0,330
+chr1	38933	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;DP=28;Dels=0.00;FS=4.494;HaplotypeScore=6.2885;MLEAC=1;MLEAF=0.500;MQ=33.72;MQ0=0;MQRankSum=-1.020;QD=1.35;ReadPosRankSum=2.039;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|taC/taT|Y307|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:23,5:28:66:66,0,561
+chr1	38942	.	G	C	697.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=10.5944;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=26.84;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|ggG/ggC|G310|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:0,26:26:63:726,63,0
+chr1	38949	.	T	C	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;DP=23;Dels=0.00;FS=6.415;HaplotypeScore=5.1982;MLEAC=1;MLEAF=0.500;MQ=34.90;MQ0=0;MQRankSum=1.291;QD=14.51;ReadPosRankSum=2.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ttt/Ctt|F313L|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:9,14:23:99:362,0,165
+chr1	38951	.	T	G	24.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;DP=21;Dels=0.00;FS=2.884;HaplotypeScore=5.1982;MLEAC=1;MLEAF=0.500;MQ=36.04;MQ0=0;MQRankSum=0.151;QD=1.18;ReadPosRankSum=-2.764;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|ttT/ttG|F313L|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:18,3:21:53:53,0,465
+chr1	38954	.	A	G	534.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=28.15;EFF=DOWNSTREAM(MODIFIER||||Cc01g00030|mRNA||GSCOCT00012437001|),SYNONYMOUS_CODING(LOW|SILENT|ccA/ccG|P314|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:0,19:19:48:563,48,0
+chr1	38996	.	T	G	345.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=1;QD=19.21;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctT/ctG|L328|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:0,13:18:30:374,30,0
+chr1	38998	.	G	A	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DP=22;Dels=0.00;FS=3.358;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=30.79;MQ0=1;MQRankSum=2.426;QD=14.94;ReadPosRankSum=2.499;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gGa/gAa|G329E|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:9,13:22:30:357,0,30
+chr1	39012	.	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DP=31;Dels=0.00;FS=6.864;HaplotypeScore=3.8698;MLEAC=1;MLEAF=0.500;MQ=29.64;MQ0=2;MQRankSum=0.242;QD=0.99;ReadPosRankSum=1.534;EFF=SYNONYMOUS_CODING(LOW|SILENT|Ctg/Ttg|L334|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:25,6:31:59:59,0,466
+chr1	39047	.	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DP=43;Dels=0.00;FS=8.463;HaplotypeScore=12.3919;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=5;MQRankSum=0.113;QD=2.27;ReadPosRankSum=-0.038;EFF=SYNONYMOUS_CODING(LOW|SILENT|gaT/gaC|D345|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:36,7:43:99:126,0,608
+chr1	39056	.	A	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;DP=51;Dels=0.00;FS=13.801;HaplotypeScore=11.9705;MLEAC=1;MLEAF=0.500;MQ=26.54;MQ0=6;MQRankSum=1.911;QD=6.82;ReadPosRankSum=-0.405;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaA/aaT|K348N|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:32,19:51:99:376,0,461
+chr1	39103	.	C	T	1400.77	.	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9611;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=10;QD=21.22;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gCg/gTg|A364V|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1429,129,0
+chr1	39113	.	C	T	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;DP=67;Dels=0.00;FS=2.370;HaplotypeScore=12.4314;MLEAC=1;MLEAF=0.500;MQ=30.14;MQ0=9;MQRankSum=-3.266;QD=8.16;ReadPosRankSum=1.680;EFF=SYNONYMOUS_CODING(LOW|SILENT|acC/acT|T367|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:26,41:67:99:575,0,677
+chr1	39116	.	T	C	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.4367;MLEAC=1;MLEAF=0.500;MQ=29.93;MQ0=9;MQRankSum=3.100;QD=8.41;ReadPosRankSum=-0.858;EFF=SYNONYMOUS_CODING(LOW|SILENT|taT/taC|Y368|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:43,24:67:99:592,0,634
+chr1	39117	.	G	C	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;DP=67;Dels=0.00;FS=1.309;HaplotypeScore=10.4367;MLEAC=1;MLEAF=0.500;MQ=29.61;MQ0=9;MQRankSum=1.678;QD=16.32;ReadPosRankSum=-0.336;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtc/Ctc|V369L|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:18,49:67:99:1122,0,102
+chr1	39150	.	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;DP=74;Dels=0.00;FS=5.772;HaplotypeScore=13.8080;MLEAC=1;MLEAF=0.500;MQ=28.74;MQ0=6;MQRankSum=2.238;QD=5.12;ReadPosRankSum=1.855;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gag/Aag|E380K|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:57,17:74:99:407,0,823
+chr1	39172	.	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DP=58;Dels=0.00;FS=4.464;HaplotypeScore=6.4651;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=1;MQRankSum=2.790;QD=5.15;ReadPosRankSum=0.121;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGg/aAg|R387K|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:44,14:58:99:327,0,622
+chr1	39178	.	A	C	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;DP=53;Dels=0.00;FS=7.365;HaplotypeScore=8.0329;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=0;MQRankSum=2.138;QD=3.96;ReadPosRankSum=0.384;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAg/gCg|E389A|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:42,11:53:99:238,0,621
+chr1	39240	.	C	A	821.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=21.07;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cct/Act|P410T|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:0,39:39:78:850,78,0
+chr1	39253	.	G	A	804.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=2;QD=20.64;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGg/aAg|R414K|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:0,39:39:75:833,75,0
+chr1	39271	.	G	T	806.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.780;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.3949;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=8;MQRankSum=2.441;QD=18.34;ReadPosRankSum=1.535;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGa/aTa|R420I|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:9,35:44:50:835,50,0
+chr1	39276	.	G	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;DP=48;Dels=0.00;FS=2.414;HaplotypeScore=5.3949;MLEAC=1;MLEAF=0.500;MQ=27.41;MQ0=9;MQRankSum=0.777;QD=1.14;ReadPosRankSum=-0.609;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtt/Ttt|V422F|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:43,5:48:83:83,0,754
+chr1	39306	.	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.9525;MLEAC=1;MLEAF=0.500;MQ=26.06;MQ0=10;MQRankSum=0.296;QD=2.81;ReadPosRankSum=1.235;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gac/Aac|D432N|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:41,8:49:99:166,0,570
+chr1	39324	.	C	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=8.4793;MLEAC=1;MLEAF=0.500;MQ=22.99;MQ0=11;MQRankSum=0.420;QD=3.08;ReadPosRankSum=-0.128;EFF=SYNONYMOUS_CODING(LOW|SILENT|Ctg/Ttg|L438|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:34,12:46:99:170,0,488
+chr1	39353	.	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=23.89;MQ0=9;MQRankSum=-0.726;QD=3.15;ReadPosRankSum=-0.286;EFF=SYNONYMOUS_CODING(LOW|SILENT|caC/caT|H447|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:26,13:39:99:151,0,416
+chr1	39356	.	T	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=24.07;MQ0=9;MQRankSum=-0.636;QD=1.55;ReadPosRankSum=0.194;EFF=SYNONYMOUS_CODING(LOW|SILENT|agT/agC|S448|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:27,9:36:84:84,0,463
+chr1	39366	.	C	G	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.6622;MLEAC=1;MLEAF=0.500;MQ=24.65;MQ0=7;MQRankSum=1.387;QD=13.05;ReadPosRankSum=0.000;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgc/Ggc|R452G|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	0/1:8,25:33:68:459,0,68
+chr1	39388	.	T	C	309.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=2;QD=19.36;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTt/gCt|V459A|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:0,16:16:36:338,36,0
+chr1	39389	.	T	C	316.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=2;QD=19.80;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtT/gtC|V459|Cc01g00040|mRNA||GSCOCT00012436001|Exon_chr1_38460_39766)	GT:AD:DP:GQ:PL	1/1:0,16:16:36:345,36,0
+chr1	39403	.	T	C	290.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.255;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.86;MQ0=2;MQRankSum=1.104;QD=17.12;ReadPosRankSum=-0.255;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:3,14:17:13:319,13,0
+chr1	39422	.	T	C	231.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=1;QD=19.32;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:24:260,24,0
+chr1	39447	.	T	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.212;DP=26;Dels=0.00;FS=9.558;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=31.03;MQ0=4;MQRankSum=2.899;QD=4.53;ReadPosRankSum=-0.862;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,5:26:99:146,0,489
+chr1	39484	.	T	C	611.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.8320;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=3;QD=26.60;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:51:640,51,0
+chr1	39510	.	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;DP=20;Dels=0.00;FS=2.963;HaplotypeScore=7.6395;MLEAC=1;MLEAF=0.500;MQ=30.59;MQ0=3;MQRankSum=2.583;QD=6.49;ReadPosRankSum=-0.053;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:15,5:20:99:158,0,271
+chr1	39526	.	A	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=3;MQRankSum=-1.408;QD=6.20;ReadPosRankSum=1.749;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:6,8:14:99:115,0,155
+chr1	39567	.	G	C	371.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=1;QD=15.49;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:42:400,42,0
+chr1	39584	.	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DP=38;Dels=0.03;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.96;MQ0=1;MQRankSum=0.330;QD=14.99;ReadPosRankSum=0.330;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:7,30:37:74:598,0,74
+chr1	39587	.	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;DP=40;Dels=0.03;FS=7.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=1;MQRankSum=-0.714;QD=1.07;ReadPosRankSum=-0.165;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:32,7:39:71:71,0,649
+chr1	39596	.	A	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;DP=52;Dels=0.00;FS=9.385;HaplotypeScore=3.4616;MLEAC=1;MLEAF=0.500;MQ=33.54;MQ0=1;MQRankSum=-1.360;QD=0.76;ReadPosRankSum=0.065;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:44,8:52:68:68,0,1009
+chr1	39631	.	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DP=77;Dels=0.00;FS=1.669;HaplotypeScore=7.9697;MLEAC=1;MLEAF=0.500;MQ=33.50;MQ0=1;MQRankSum=-0.513;QD=0.63;ReadPosRankSum=1.240;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:66,9:77:77:77,0,1546
+chr1	39643	.	C	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;DP=64;Dels=0.00;FS=1.508;HaplotypeScore=19.0317;MLEAC=1;MLEAF=0.500;MQ=34.92;MQ0=0;MQRankSum=0.541;QD=1.37;ReadPosRankSum=-1.004;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,9:64:99:116,0,1373
+chr1	39644	.	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;DP=64;Dels=0.00;FS=1.508;HaplotypeScore=19.0317;MLEAC=1;MLEAF=0.500;MQ=34.92;MQ0=0;MQRankSum=0.599;QD=1.54;ReadPosRankSum=-0.966;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,9:64:99:127,0,1357
+chr1	39648	.	G	C	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=58.2273;MLEAC=1;MLEAF=0.500;MQ=35.15;MQ0=0;MQRankSum=3.645;QD=21.79;ReadPosRankSum=-1.153;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:14,48:62:58:1379,0,58
+chr1	39651	.	C	G	1622.77	.	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=56.2590;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;QD=27.98;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1651,138,0
+chr1	39652	.	G	A	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;DP=58;Dels=0.00;FS=1.714;HaplotypeScore=66.4027;MLEAC=1;MLEAF=0.500;MQ=36.14;MQ0=0;MQRankSum=-1.217;QD=0.34;ReadPosRankSum=0.263;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,7:58:48:48,0,1327
+chr1	39656	.	G	A	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;DP=58;Dels=0.00;FS=17.787;HaplotypeScore=76.5466;MLEAC=1;MLEAF=0.500;MQ=36.14;MQ0=0;MQRankSum=-3.172;QD=6.93;ReadPosRankSum=1.492;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:33,25:58:99:430,0,880
+chr1	39657	.	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;DP=57;Dels=0.00;FS=10.567;HaplotypeScore=76.5466;MLEAC=1;MLEAF=0.500;MQ=36.40;MQ0=0;MQRankSum=-2.652;QD=3.77;ReadPosRankSum=1.846;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,18:57:99:243,0,1124
+chr1	39659	.	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;DP=56;Dels=0.00;FS=3.377;HaplotypeScore=37.1251;MLEAC=1;MLEAF=0.500;MQ=36.35;MQ0=0;MQRankSum=0.246;QD=1.14;ReadPosRankSum=0.199;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:48,8:56:92:92,0,1236
+chr1	39662	.	A	G	1224.79	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=54.7091;MLEAC=1;MLEAF=0.500;MQ=36.36;MQ0=0;QD=22.68;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,43:54:99:1385,118,0
+chr1	39664	.	A	C	11.12	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=53.7676;MLEAC=1;MLEAF=0.500;MQ=36.29;MQ0=0;MQRankSum=-3.301;QD=0.21;ReadPosRankSum=1.393;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,11:53:39:39,0,1193
+chr1	39669	.	G	A	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DP=50;Dels=0.00;FS=1.659;HaplotypeScore=69.6890;MLEAC=1;MLEAF=0.500;MQ=35.68;MQ0=0;MQRankSum=-0.075;QD=0.30;ReadPosRankSum=1.955;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:44,6:50:43:43,0,1137
+chr1	39670	.	C	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;DP=44;Dels=0.00;FS=2.860;HaplotypeScore=65.0263;MLEAC=1;MLEAF=0.500;MQ=33.34;MQ0=0;MQRankSum=1.698;QD=6.43;ReadPosRankSum=0.000;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:31,13:44:99:311,0,662
+chr1	39671	.	C	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=69.6870;MLEAC=1;MLEAF=0.500;MQ=33.34;MQ0=0;MQRankSum=-2.765;QD=0.86;ReadPosRankSum=-0.217;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:33,11:44:66:66,0,915
+chr1	39673	.	C	A	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;DP=42;Dels=0.00;FS=4.360;HaplotypeScore=59.5432;MLEAC=1;MLEAF=0.500;MQ=33.27;MQ0=0;MQRankSum=1.563;QD=9.57;ReadPosRankSum=0.902;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,18:42:99:430,0,510
+chr1	39676	.	G	A	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;DP=41;Dels=0.00;FS=5.757;HaplotypeScore=49.3994;MLEAC=1;MLEAF=0.500;MQ=33.35;MQ0=0;MQRankSum=-0.931;QD=13.90;ReadPosRankSum=-0.215;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:12,29:41:99:598,0,311
+chr1	39678	.	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;DP=41;Dels=0.00;FS=6.236;HaplotypeScore=49.3994;MLEAC=1;MLEAF=0.500;MQ=33.35;MQ0=0;MQRankSum=1.091;QD=2.77;ReadPosRankSum=1.923;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:34,7:41:99:142,0,757
+chr1	39681	.	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DP=40;Dels=0.00;FS=1.360;HaplotypeScore=29.6132;MLEAC=1;MLEAF=0.500;MQ=33.13;MQ0=0;MQRankSum=1.431;QD=6.37;ReadPosRankSum=-0.635;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,12:40:99:283,0,590
+chr1	39685	.	T	C	820.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=10.9898;MLEAC=2;MLEAF=1.00;MQ=34.61;MQ0=0;QD=24.87;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:75:849,75,0
+chr1	39710	.	A	G	29.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.30;MQ0=0;MQRankSum=-0.736;QD=9.93;ReadPosRankSum=0.736;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:1,2:3:29:58,0,29
+chr1	39718	.	T	C	39.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;QD=19.87;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
+chr1	39719	.	A	G	39.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;QD=19.87;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
+chr1	39722	.	C	A	37.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;QD=18.87;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:65,6,0
+chr1	39725	.	A	G	39.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=13.25;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:6:67,6,0
+chr1	39728	.	T	C	39.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=0;QD=9.94;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,4:4:6:67,6,0
+chr1	39736	.	C	T	237.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=0;QD=19.82;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:24:266,24,0
+chr1	39751	.	C	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=30.63;MQ0=0;MQRankSum=0.930;QD=14.14;ReadPosRankSum=-0.085;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:3,10:13:40:212,0,40
+chr1	39756	.	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=30.63;MQ0=0;MQRankSum=0.761;QD=14.60;ReadPosRankSum=-0.085;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:3,10:13:40:218,0,40
+chr1	39758	.	A	G	241.78	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=18.60;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,12:13:24:270,24,0
+chr1	39777	.	T	A	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=21.2570;MLEAC=1;MLEAF=0.500;MQ=36.27;MQ0=0;MQRankSum=1.668;QD=22.67;ReadPosRankSum=-0.927;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:4,21:25:29:595,0,29
+chr1	39810	.	T	C	2246.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.769;DP=69;Dels=0.00;FS=2.663;HaplotypeScore=6.9006;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;MQRankSum=1.949;QD=32.56;ReadPosRankSum=0.089;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:2,67:69:99:2275,144,0
+chr1	39820	.	T	G	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;DP=75;Dels=0.00;FS=0.967;HaplotypeScore=5.9128;MLEAC=1;MLEAF=0.500;MQ=40.90;MQ0=0;MQRankSum=2.599;QD=10.33;ReadPosRankSum=1.672;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:48,27:75:99:803,0,1331
+chr1	39826	.	A	C	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9758;MLEAC=1;MLEAF=0.500;MQ=40.59;MQ0=0;MQRankSum=2.470;QD=10.80;ReadPosRankSum=0.611;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,30:80:99:892,0,1425
+chr1	39866	.	T	A	23.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;DP=50;Dels=0.04;FS=1.930;HaplotypeScore=58.2750;MLEAC=1;MLEAF=0.500;MQ=43.17;MQ0=0;MQRankSum=0.945;QD=0.48;ReadPosRankSum=-3.645;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:43,5:48:52:52,0,1435
+chr1	39890	.	A	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;DP=34;Dels=0.00;FS=6.017;HaplotypeScore=26.6204;MLEAC=1;MLEAF=0.500;MQ=40.76;MQ0=0;MQRankSum=-2.459;QD=5.43;ReadPosRankSum=1.600;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:25,9:34:99:213,0,772
+chr1	39891	.	T	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DP=43;Dels=0.00;FS=1.596;HaplotypeScore=26.6204;MLEAC=1;MLEAF=0.500;MQ=40.93;MQ0=1;MQRankSum=-2.575;QD=3.44;ReadPosRankSum=2.330;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:34,9:43:99:176,0,1067
+chr1	39914	.	A	T	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=23.4102;MLEAC=1;MLEAF=0.500;MQ=40.57;MQ0=4;MQRankSum=0.588;QD=15.15;ReadPosRankSum=-0.170;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:23,22:45:99:710,0,508
+chr1	39960	.	C	A,T	1177.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=42.42;MQ0=3;QD=25.05;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/2:0,22,25:47:99:1385,655,589,730,0,673
+chr1	39961	.	C	T	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;DP=47;Dels=0.00;FS=1.512;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=42.42;MQ0=3;MQRankSum=1.537;QD=14.12;ReadPosRankSum=-0.645;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:692,0,570
+chr1	39965	.	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4258;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=32.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,43:47:99:1547,126,0
+chr1	39976	.	A	G	1421.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=33.85;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1450,117,0
+chr1	39993	.	A	G	1637.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=30.2512;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=34.12;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1666,135,0
+chr1	40003	.	A	G	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;DP=41;Dels=0.00;FS=2.755;HaplotypeScore=36.9270;MLEAC=1;MLEAF=0.500;MQ=41.65;MQ0=0;MQRankSum=-3.665;QD=10.36;ReadPosRankSum=-2.673;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,20:41:99:453,0,706
+chr1	40005	.	G	A	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;DP=42;Dels=0.00;FS=12.410;HaplotypeScore=36.9270;MLEAC=1;MLEAF=0.500;MQ=41.54;MQ0=0;MQRankSum=0.221;QD=5.64;ReadPosRankSum=-2.525;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:32,10:42:99:265,0,940
+chr1	40007	.	T	A	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DP=42;Dels=0.00;FS=4.327;HaplotypeScore=36.9270;MLEAC=1;MLEAF=0.500;MQ=41.54;MQ0=0;MQRankSum=3.748;QD=16.04;ReadPosRankSum=2.365;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:702,0,465
+chr1	40020	.	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=42;Dels=0.00;FS=15.124;HaplotypeScore=19.7971;MLEAC=1;MLEAF=0.500;MQ=41.55;MQ0=0;MQRankSum=1.991;QD=3.33;ReadPosRankSum=-2.632;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:35,7:42:99:168,0,1045
+chr1	40026	.	A	G	25.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=2.995;DP=44;Dels=0.00;FS=1.981;HaplotypeScore=27.1716;MLEAC=1;MLEAF=0.500;MQ=43.19;MQ0=0;MQRankSum=-1.590;QD=0.59;ReadPosRankSum=-0.407;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,5:44:54:54,0,1169
+chr1	40027	.	C	T	25.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;DP=44;Dels=0.00;FS=4.177;HaplotypeScore=27.1716;MLEAC=1;MLEAF=0.500;MQ=43.37;MQ0=0;MQRankSum=-1.590;QD=0.59;ReadPosRankSum=-0.407;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,5:44:54:54,0,1200
+chr1	40029	.	T	C	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DP=38;Dels=0.00;FS=1.939;HaplotypeScore=27.1716;MLEAC=1;MLEAF=0.500;MQ=45.09;MQ0=0;MQRankSum=1.977;QD=25.73;ReadPosRankSum=0.067;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:5,32:38:68:1006,0,68
+chr1	40032	.	T	C	1048.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=12.1898;MLEAC=1;MLEAF=0.500;MQ=45.61;MQ0=0;MQRankSum=4.052;QD=28.35;ReadPosRankSum=-2.113;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:7,30:37:17:1077,0,17
+chr1	40037	.	G	T	1253.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=12.1898;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=32.99;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1282,108,0
+chr1	40050	.	T	C	1369.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=33.41;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1398,117,0
+chr1	40053	.	C	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.5950;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=1.442;QD=5.73;ReadPosRankSum=-0.103;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:35,11:46:99:292,0,1057
+chr1	40084	.	T	A	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=48;Dels=0.00;FS=1.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=0;MQRankSum=0.136;QD=13.27;ReadPosRankSum=-0.512;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,20:48:99:665,0,943
+chr1	40096	.	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=0;MQRankSum=0.374;QD=13.50;ReadPosRankSum=-0.935;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:27,21:48:99:676,0,875
+chr1	40115	.	G	A	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=21.9178;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=0;MQRankSum=-0.379;QD=19.83;ReadPosRankSum=-1.244;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:19,29:48:99:980,0,633
+chr1	40186	.	A	G	2354.77	.	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=25.20;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2383,181,0
+chr1	40187	.	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DP=65;Dels=0.00;FS=14.460;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=55.60;MQ0=0;MQRankSum=-3.656;QD=0.92;ReadPosRankSum=-1.833;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:56,9:65:88:88,0,1926
+chr1	40200	.	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=16.7520;MLEAC=1;MLEAF=0.500;MQ=54.56;MQ0=0;MQRankSum=0.152;QD=1.71;ReadPosRankSum=-1.227;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,10:73:99:153,0,2048
+chr1	40205	.	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;DP=74;Dels=0.00;FS=1.321;HaplotypeScore=20.7504;MLEAC=1;MLEAF=0.500;MQ=54.71;MQ0=0;MQRankSum=-4.008;QD=0.46;ReadPosRankSum=2.111;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:64,10:74:62:62,0,1934
+chr1	40212	.	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;DP=73;Dels=0.00;FS=1.331;HaplotypeScore=32.7378;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=-0.609;QD=2.30;ReadPosRankSum=1.072;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,11:73:99:196,0,1961
+chr1	40216	.	C	T	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=77;Dels=0.00;FS=3.483;HaplotypeScore=23.9149;MLEAC=1;MLEAF=0.500;MQ=53.72;MQ0=0;MQRankSum=2.932;QD=7.82;ReadPosRankSum=-1.909;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:52,25:77:99:630,0,1637
+chr1	40235	.	A	G	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=35.5558;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=0;MQRankSum=-0.751;QD=9.86;ReadPosRankSum=0.430;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,29:80:99:817,0,1701
+chr1	40238	.	A	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=31.6873;MLEAC=1;MLEAF=0.500;MQ=54.96;MQ0=0;MQRankSum=-3.462;QD=5.38;ReadPosRankSum=-2.038;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:61,22:83:99:475,0,2185
+chr1	40257	.	G	A	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;DP=89;Dels=0.00;FS=1.765;HaplotypeScore=39.6559;MLEAC=1;MLEAF=0.500;MQ=54.97;MQ0=0;MQRankSum=-4.194;QD=14.62;ReadPosRankSum=-0.491;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:49,40:89:99:1329,0,1466
+chr1	40262	.	T	C	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;DP=90;Dels=0.00;FS=12.546;HaplotypeScore=41.5222;MLEAC=1;MLEAF=0.500;MQ=54.41;MQ0=0;MQRankSum=-1.449;QD=14.11;ReadPosRankSum=-0.272;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,40:90:99:1298,0,1623
+chr1	40276	.	G	A	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DP=99;Dels=0.00;FS=2.892;HaplotypeScore=39.6083;MLEAC=1;MLEAF=0.500;MQ=54.31;MQ0=0;MQRankSum=4.526;QD=8.99;ReadPosRankSum=-0.483;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:69,30:99:99:918,0,2233
+chr1	40279	.	A	C,G	2850.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=22.6138;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.31;MQ0=0;QD=28.50;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/2:0,73,17:100:99:3203,624,407,2579,0,2528
+chr1	40299	.	T	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;DP=94;Dels=0.00;FS=4.739;HaplotypeScore=9.9774;MLEAC=1;MLEAF=0.500;MQ=54.77;MQ0=0;MQRankSum=1.944;QD=0.97;ReadPosRankSum=1.919;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:84,10:94:99:119,0,2786
+chr1	40300	.	A	G	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;DP=96;Dels=0.00;FS=2.677;HaplotypeScore=9.9774;MLEAC=1;MLEAF=0.500;MQ=54.67;MQ0=0;MQRankSum=-4.317;QD=12.97;ReadPosRankSum=1.223;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:53,43:96:99:1273,0,1762
+chr1	40316	.	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DP=100;Dels=0.00;FS=6.354;HaplotypeScore=64.5095;MLEAC=1;MLEAF=0.500;MQ=54.47;MQ0=0;MQRankSum=-6.856;QD=4.66;ReadPosRankSum=-0.901;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,23:100:99:494,0,2754
+chr1	40317	.	G	A	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DP=98;Dels=0.00;FS=6.790;HaplotypeScore=64.5095;MLEAC=1;MLEAF=0.500;MQ=54.36;MQ0=0;MQRankSum=0.824;QD=4.58;ReadPosRankSum=-0.313;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:78,20:98:99:477,0,2577
+chr1	40321	.	T	A	3751.77	.	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=68.1412;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=32.47;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3780,292,0
+chr1	40326	.	T	C	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DP=102;Dels=0.00;FS=8.509;HaplotypeScore=104.4492;MLEAC=1;MLEAF=0.500;MQ=54.57;MQ0=0;MQRankSum=5.492;QD=10.82;ReadPosRankSum=1.134;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:65,37:102:99:1132,0,2119
+chr1	40331	.	C	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=42.7177;MLEAC=1;MLEAF=0.500;MQ=54.62;MQ0=0;MQRankSum=3.620;QD=6.58;ReadPosRankSum=-0.770;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,23:93:99:640,0,2316
+chr1	40336	.	C	T	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DP=89;Dels=0.00;FS=7.137;HaplotypeScore=40.7185;MLEAC=1;MLEAF=0.500;MQ=54.60;MQ0=0;MQRankSum=4.995;QD=12.21;ReadPosRankSum=0.722;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,34:89:99:1115,0,1717
+chr1	40340	.	T	C	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;DP=87;Dels=0.00;FS=8.927;HaplotypeScore=60.7684;MLEAC=1;MLEAF=0.500;MQ=55.14;MQ0=0;MQRankSum=-3.839;QD=18.84;ReadPosRankSum=-0.039;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:35,52:87:99:1667,0,1091
+chr1	40350	.	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;DP=100;Dels=0.00;FS=2.227;HaplotypeScore=42.2843;MLEAC=1;MLEAF=0.500;MQ=55.57;MQ0=0;MQRankSum=-3.916;QD=2.79;ReadPosRankSum=-0.327;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:82,18:100:99:307,0,2907
+chr1	40357	.	A	G	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;DP=101;Dels=0.00;FS=8.331;HaplotypeScore=60.4654;MLEAC=1;MLEAF=0.500;MQ=56.15;MQ0=0;MQRankSum=-3.892;QD=11.69;ReadPosRankSum=-1.377;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,40:100:99:1209,0,1863
+chr1	40359	.	T	C	3820.77	.	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=60.4654;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=29.33;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,100:101:99:3849,295,0
+chr1	40367	.	G	A	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;DP=100;Dels=0.00;FS=2.623;HaplotypeScore=40.4721;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=3.679;QD=14.56;ReadPosRankSum=-0.818;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,45:100:99:1484,0,1789
+chr1	40385	.	A	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;DP=99;Dels=0.00;FS=2.269;HaplotypeScore=13.6606;MLEAC=1;MLEAF=0.500;MQ=57.22;MQ0=0;MQRankSum=-2.742;QD=3.11;ReadPosRankSum=-0.070;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:82,17:99:99:336,0,2801
+chr1	40386	.	T	C	3699.77	.	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=13.6606;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=26.94;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3728,298,0
+chr1	40390	.	C	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;DP=102;Dels=0.00;FS=10.470;HaplotypeScore=47.4671;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=0;MQRankSum=-0.627;QD=2.08;ReadPosRankSum=-1.113;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:88,14:102:99:240,0,3128
+chr1	40397	.	T	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DP=99;Dels=0.00;FS=2.447;HaplotypeScore=91.1211;MLEAC=1;MLEAF=0.500;MQ=57.63;MQ0=0;MQRankSum=-2.184;QD=2.04;ReadPosRankSum=1.270;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:85,14:99:99:230,0,3009
+chr1	40398	.	T	G	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DP=98;Dels=0.00;FS=0.959;HaplotypeScore=91.9098;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=0;MQRankSum=-0.904;QD=4.41;ReadPosRankSum=1.820;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:78,20:98:99:460,0,2711
+chr1	40401	.	C	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;DP=96;Dels=0.00;FS=2.289;HaplotypeScore=54.1136;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=0;MQRankSum=-1.696;QD=3.29;ReadPosRankSum=-0.113;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:80,16:96:99:344,0,2884
+chr1	40405	.	A	T	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;DP=97;Dels=0.00;FS=4.295;HaplotypeScore=68.8441;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=1.976;QD=7.68;ReadPosRankSum=-0.753;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,27:97:99:773,0,2466
+chr1	40415	.	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;DP=95;Dels=0.00;FS=4.129;HaplotypeScore=16.3079;MLEAC=1;MLEAF=0.500;MQ=57.68;MQ0=0;MQRankSum=-0.121;QD=2.67;ReadPosRankSum=1.045;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:81,14:95:99:282,0,2906
+chr1	40423	.	G	A	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=14.9944;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=0;MQRankSum=-0.719;QD=7.61;ReadPosRankSum=-0.969;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:67,27:94:99:744,0,2306
+chr1	40444	.	C	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=25.1958;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=1.888;QD=4.66;ReadPosRankSum=-0.214;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,18:91:99:452,0,2590
+chr1	40450	.	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;DP=86;Dels=0.00;FS=10.543;HaplotypeScore=36.1917;MLEAC=1;MLEAF=0.500;MQ=54.45;MQ0=0;MQRankSum=-0.407;QD=1.33;ReadPosRankSum=0.269;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:74,10:86:99:143,0,2614
+chr1	40451	.	C	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=37.1784;MLEAC=1;MLEAF=0.500;MQ=54.45;MQ0=0;MQRankSum=2.698;QD=1.68;ReadPosRankSum=0.430;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:74,12:86:99:173,0,2633
+chr1	40454	.	T	C	3335.77	.	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=37.1746;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=34.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,87:88:99:3364,259,0
+chr1	40455	.	C	T	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DP=89;Dels=0.00;FS=5.908;HaplotypeScore=37.1645;MLEAC=1;MLEAF=0.500;MQ=54.37;MQ0=0;MQRankSum=0.165;QD=8.65;ReadPosRankSum=0.745;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,27:89:99:798,0,2174
+chr1	40458	.	G	A	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;DP=90;Dels=0.00;FS=1.024;HaplotypeScore=37.1645;MLEAC=1;MLEAF=0.500;MQ=54.01;MQ0=0;MQRankSum=1.062;QD=3.88;ReadPosRankSum=0.175;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,17:90:99:377,0,2596
+chr1	40468	.	C	T	3532.77	.	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=32.9796;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=29.59;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3561,277,0
+chr1	40469	.	C	T	13.95	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;DP=94;Dels=0.00;FS=5.381;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=0;MQRankSum=-1.186;QD=0.15;ReadPosRankSum=2.161;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:86,8:94:42:42,0,3030
+chr1	40480	.	C	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DP=106;Dels=0.00;FS=4.744;HaplotypeScore=40.7109;MLEAC=1;MLEAF=0.500;MQ=53.17;MQ0=0;MQRankSum=-0.111;QD=4.04;ReadPosRankSum=0.531;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:85,21:106:99:456,0,3043
+chr1	40490	.	T	C	2948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DP=107;Dels=0.00;FS=9.034;HaplotypeScore=71.4806;MLEAC=1;MLEAF=0.500;MQ=52.29;MQ0=0;MQRankSum=1.008;QD=27.56;ReadPosRankSum=2.877;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:20,85:107:99:2977,0,405
+chr1	40495	.	C	G	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;DP=114;Dels=0.00;FS=1.985;HaplotypeScore=71.4457;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=0;MQRankSum=-0.918;QD=5.58;ReadPosRankSum=1.176;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,23:114:99:664,0,2502
+chr1	40497	.	G	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=69.4473;MLEAC=1;MLEAF=0.500;MQ=51.94;MQ0=0;MQRankSum=-0.543;QD=2.38;ReadPosRankSum=-0.259;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:95,17:112:99:295,0,3323
+chr1	40511	.	A	G	3183.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=39.7486;MLEAC=1;MLEAF=0.500;MQ=52.34;MQ0=0;MQRankSum=0.371;QD=27.45;ReadPosRankSum=0.555;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,92:116:99:3212,0,569
+chr1	40524	.	G	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;DP=123;Dels=0.00;FS=2.035;HaplotypeScore=26.4109;MLEAC=1;MLEAF=0.500;MQ=53.69;MQ0=0;MQRankSum=-2.672;QD=2.92;ReadPosRankSum=-0.595;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:102,21:123:99:387,0,3524
+chr1	40526	.	G	A	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;DP=123;Dels=0.00;FS=2.894;HaplotypeScore=26.2780;MLEAC=1;MLEAF=0.500;MQ=53.86;MQ0=0;MQRankSum=-0.204;QD=5.13;ReadPosRankSum=1.764;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:95,27:123:99:659,0,3056
+chr1	40541	.	G	T	4628.77	.	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=34.87;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,120:120:99:4657,346,0
+chr1	40559	.	T	A	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;DP=122;Dels=0.00;FS=1.745;HaplotypeScore=75.4361;MLEAC=1;MLEAF=0.500;MQ=55.41;MQ0=0;MQRankSum=3.818;QD=5.47;ReadPosRankSum=1.838;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:95,27:122:99:695,0,3342
+chr1	40562	.	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DP=119;Dels=0.00;FS=6.618;HaplotypeScore=120.3506;MLEAC=1;MLEAF=0.500;MQ=55.41;MQ0=0;MQRankSum=-3.315;QD=3.02;ReadPosRankSum=-1.752;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:99,20:119:99:388,0,3464
+chr1	40565	.	G	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=115;Dels=0.00;FS=3.367;HaplotypeScore=128.0268;MLEAC=1;MLEAF=0.500;MQ=55.50;MQ0=0;MQRankSum=-0.666;QD=3.55;ReadPosRankSum=-1.487;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:96,19:115:99:437,0,3355
+chr1	40570	.	T	A	2544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=116.1873;MLEAC=1;MLEAF=0.500;MQ=55.39;MQ0=0;MQRankSum=-4.456;QD=20.86;ReadPosRankSum=-3.072;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:46,76:122:99:2573,0,1468
+chr1	40572	.	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;DP=126;Dels=0.00;FS=16.724;HaplotypeScore=113.1887;MLEAC=1;MLEAF=0.500;MQ=55.48;MQ0=0;MQRankSum=-3.211;QD=2.10;ReadPosRankSum=-0.566;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:107,19:126:99:293,0,3847
+chr1	40574	.	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;DP=128;Dels=0.00;FS=3.770;HaplotypeScore=81.5684;MLEAC=1;MLEAF=0.500;MQ=55.49;MQ0=0;MQRankSum=1.064;QD=1.61;ReadPosRankSum=1.108;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:111,16:128:99:234,0,3817
+chr1	40587	.	A	G	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;DP=153;Dels=0.00;FS=0.744;HaplotypeScore=3.5220;MLEAC=1;MLEAF=0.500;MQ=55.68;MQ0=1;MQRankSum=2.151;QD=5.55;ReadPosRankSum=0.506;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:119,34:153:99:877,0,4088
+chr1	40598	.	A	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;DP=145;Dels=0.00;FS=0.898;HaplotypeScore=3.5220;MLEAC=1;MLEAF=0.500;MQ=55.69;MQ0=1;MQRankSum=-3.872;QD=2.10;ReadPosRankSum=2.377;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:124,21:145:99:333,0,4371
+chr1	40601	.	T	C	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DP=141;Dels=0.00;FS=0.951;HaplotypeScore=2.7882;MLEAC=1;MLEAF=0.500;MQ=55.65;MQ0=1;MQRankSum=-4.326;QD=2.24;ReadPosRankSum=3.042;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:122,19:141:99:344,0,4357
+chr1	40604	.	A	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;DP=140;Dels=0.00;FS=0.952;HaplotypeScore=3.7881;MLEAC=1;MLEAF=0.500;MQ=55.46;MQ0=1;MQRankSum=-4.123;QD=2.30;ReadPosRankSum=3.050;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:121,19:140:99:350,0,4326
+chr1	40607	.	A	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;DP=138;Dels=0.00;FS=2.058;HaplotypeScore=2.7884;MLEAC=1;MLEAF=0.500;MQ=55.40;MQ0=1;MQRankSum=-3.796;QD=2.44;ReadPosRankSum=2.787;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:119,19:138:99:365,0,4122
+chr1	40613	.	T	C	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DP=138;Dels=0.00;FS=0.884;HaplotypeScore=34.9737;MLEAC=1;MLEAF=0.500;MQ=54.85;MQ0=1;MQRankSum=-4.247;QD=2.75;ReadPosRankSum=0.964;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:116,22:138:99:408,0,4053
+chr1	40618	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;DP=140;Dels=0.00;FS=8.579;HaplotypeScore=37.4958;MLEAC=1;MLEAF=0.500;MQ=54.14;MQ0=1;MQRankSum=1.916;QD=0.23;ReadPosRankSum=3.401;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:128,12:140:60:60,0,4583
+chr1	40619	.	T	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DP=141;Dels=0.00;FS=6.410;HaplotypeScore=37.4958;MLEAC=1;MLEAF=0.500;MQ=54.05;MQ0=1;MQRankSum=-2.776;QD=2.23;ReadPosRankSum=-0.855;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:120,20:141:99:342,0,4240
+chr1	40629	.	A	T	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.928;DP=134;Dels=0.00;FS=0.868;HaplotypeScore=126.7357;MLEAC=1;MLEAF=0.500;MQ=53.57;MQ0=1;MQRankSum=-4.720;QD=3.33;ReadPosRankSum=-1.529;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:112,22:134:99:474,0,3749
+chr1	40630	.	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DP=133;Dels=0.00;FS=2.109;HaplotypeScore=106.7571;MLEAC=1;MLEAF=0.500;MQ=53.52;MQ0=1;MQRankSum=-3.232;QD=2.08;ReadPosRankSum=-0.454;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:113,19:133:99:305,0,3912
+chr1	40631	.	C	T	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;DP=134;Dels=0.00;FS=0.896;HaplotypeScore=109.5452;MLEAC=1;MLEAF=0.500;MQ=53.51;MQ0=1;MQRankSum=-4.705;QD=3.01;ReadPosRankSum=-1.132;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:112,21:134:99:432,0,3926
+chr1	40635	.	C	A	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;DP=136;Dels=0.00;FS=10.739;HaplotypeScore=148.7017;MLEAC=1;MLEAF=0.500;MQ=53.34;MQ0=1;MQRankSum=5.098;QD=5.45;ReadPosRankSum=-0.010;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:87,29:136:99:770,0,3047
+chr1	40637	.	G	T	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;DP=138;Dels=0.00;FS=1.925;HaplotypeScore=146.7025;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=1;MQRankSum=-4.406;QD=3.06;ReadPosRankSum=-1.134;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:116,22:138:99:450,0,4023
+chr1	40643	.	G	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;DP=137;Dels=0.00;FS=0.905;HaplotypeScore=80.3353;MLEAC=1;MLEAF=0.500;MQ=53.30;MQ0=1;MQRankSum=-4.704;QD=2.56;ReadPosRankSum=-0.304;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:117,20:137:99:379,0,4082
+chr1	40644	.	C	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DP=136;Dels=0.00;FS=0.917;HaplotypeScore=81.3352;MLEAC=1;MLEAF=0.500;MQ=53.25;MQ0=1;MQRankSum=-4.475;QD=2.54;ReadPosRankSum=-0.344;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:116,20:136:99:373,0,4107
+chr1	40647	.	G	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;DP=143;Dels=0.00;FS=7.049;HaplotypeScore=90.1298;MLEAC=1;MLEAF=0.500;MQ=52.42;MQ0=1;MQRankSum=6.086;QD=4.35;ReadPosRankSum=-0.469;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:115,28:143:99:650,0,3953
+chr1	40653	.	C	T	5160.77	.	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=104.2700;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=1;QD=24.27;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,138:138:99:5189,397,0
+chr1	40656	.	C	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DP=136;Dels=0.00;FS=2.901;HaplotypeScore=65.3188;MLEAC=1;MLEAF=0.500;MQ=51.95;MQ0=1;MQRankSum=3.870;QD=4.26;ReadPosRankSum=2.458;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:109,27:136:99:607,0,3691
+chr1	40663	.	C	T	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;DP=131;Dels=0.00;FS=1.470;HaplotypeScore=51.1808;MLEAC=1;MLEAF=0.500;MQ=50.95;MQ0=2;MQRankSum=0.022;QD=9.31;ReadPosRankSum=-0.171;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:87,44:131:99:1248,0,2916
+chr1	40665	.	G	A	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DP=129;Dels=0.00;FS=4.193;HaplotypeScore=50.1809;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=2;MQRankSum=3.905;QD=4.50;ReadPosRankSum=1.658;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:101,28:129:99:609,0,3457
+chr1	40667	.	C	A	4617.77	.	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=25.5251;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=2;QD=27.33;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4646,352,0
+chr1	40679	.	C	T	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=116;Dels=0.00;FS=3.025;HaplotypeScore=31.7934;MLEAC=1;MLEAF=0.500;MQ=48.76;MQ0=2;MQRankSum=-6.403;QD=4.21;ReadPosRankSum=0.164;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:91,25:116:99:517,0,3113
+chr1	40680	.	C	A	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=116;Dels=0.00;FS=5.789;HaplotypeScore=31.7934;MLEAC=1;MLEAF=0.500;MQ=48.76;MQ0=2;MQRankSum=3.479;QD=5.26;ReadPosRankSum=-0.171;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:89,27:116:99:638,0,3045
+chr1	40695	.	G	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=109;Dels=0.00;FS=4.432;HaplotypeScore=15.8769;MLEAC=1;MLEAF=0.500;MQ=48.67;MQ0=1;MQRankSum=4.736;QD=1.38;ReadPosRankSum=0.679;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:97,12:109:99:179,0,3292
+chr1	40702	.	G	A	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;DP=118;Dels=0.00;FS=1.878;HaplotypeScore=12.9449;MLEAC=1;MLEAF=0.500;MQ=49.34;MQ0=1;MQRankSum=3.135;QD=5.11;ReadPosRankSum=-1.205;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:94,24:118:99:631,0,3094
+chr1	40724	.	C	T	2276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=76.4647;MLEAC=1;MLEAF=0.500;MQ=50.73;MQ0=1;MQRankSum=-4.544;QD=18.51;ReadPosRankSum=0.815;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,73:123:99:2305,0,1587
+chr1	40726	.	A	G	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;DP=121;Dels=0.00;FS=0.855;HaplotypeScore=78.4642;MLEAC=1;MLEAF=0.500;MQ=50.50;MQ0=1;MQRankSum=3.987;QD=5.24;ReadPosRankSum=-0.827;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:96,25:121:99:662,0,3213
+chr1	40730	.	T	C	2668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;DP=119;Dels=0.00;FS=0.742;HaplotypeScore=131.5265;MLEAC=1;MLEAF=0.500;MQ=50.60;MQ0=1;MQRankSum=-1.336;QD=22.43;ReadPosRankSum=1.265;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:36,83:119:99:2697,0,1090
+chr1	40731	.	T	C	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=129.2953;MLEAC=1;MLEAF=0.500;MQ=50.62;MQ0=1;MQRankSum=-0.479;QD=1.38;ReadPosRankSum=0.553;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:105,14:119:99:192,0,3588
+chr1	40742	.	C	T	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;DP=108;Dels=0.00;FS=0.859;HaplotypeScore=18.6626;MLEAC=1;MLEAF=0.500;MQ=51.05;MQ0=1;MQRankSum=-5.117;QD=4.95;ReadPosRankSum=-1.449;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:82,26:108:99:563,0,2912
+chr1	40757	.	C	T	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;DP=119;Dels=0.00;FS=2.628;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=50.49;MQ0=1;MQRankSum=-5.477;QD=9.18;ReadPosRankSum=-1.588;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,42:119:99:1121,0,2615
+chr1	40760	.	C	T	4275.77	.	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=23.5723;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=1;QD=31.74;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,117:117:99:4304,331,0
+chr1	40769	.	C	T	3289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;DP=123;Dels=0.00;FS=0.861;HaplotypeScore=41.4575;MLEAC=1;MLEAF=0.500;MQ=50.36;MQ0=1;MQRankSum=-4.495;QD=26.75;ReadPosRankSum=-0.545;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:23,99:123:99:3318,0,576
+chr1	40773	.	G	A	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;DP=126;Dels=0.00;FS=2.716;HaplotypeScore=43.4570;MLEAC=1;MLEAF=0.500;MQ=49.93;MQ0=1;MQRankSum=-2.084;QD=6.91;ReadPosRankSum=2.684;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:94,32:126:99:899,0,2993
+chr1	40788	.	A	C	1705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DP=118;Dels=0.00;FS=2.394;HaplotypeScore=117.6775;MLEAC=1;MLEAF=0.500;MQ=49.33;MQ0=1;MQRankSum=-6.557;QD=14.46;ReadPosRankSum=2.223;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,62:118:99:1734,0,1876
+chr1	40789	.	A	G	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DP=123;Dels=0.00;FS=11.420;HaplotypeScore=119.6765;MLEAC=1;MLEAF=0.500;MQ=49.20;MQ0=1;MQRankSum=3.191;QD=5.27;ReadPosRankSum=-0.253;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:97,25:123:99:677,0,3103
+chr1	40791	.	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;DP=121;Dels=0.00;FS=1.004;HaplotypeScore=70.2853;MLEAC=1;MLEAF=0.500;MQ=49.03;MQ0=1;MQRankSum=-4.589;QD=2.12;ReadPosRankSum=1.368;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:97,24:121:99:285,0,3412
+chr1	40795	.	A	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=72.2808;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=1;MQRankSum=-2.514;QD=1.04;ReadPosRankSum=2.201;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:108,17:125:99:158,0,3699
+chr1	40803	.	C	T	2015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DP=118;Dels=0.00;FS=2.491;HaplotypeScore=47.3955;MLEAC=1;MLEAF=0.500;MQ=47.79;MQ0=1;MQRankSum=-6.205;QD=17.08;ReadPosRankSum=-0.663;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:46,71:118:99:2044,0,1478
+chr1	40809	.	C	T	2959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;DP=111;Dels=0.00;FS=0.920;HaplotypeScore=68.1753;MLEAC=1;MLEAF=0.500;MQ=46.88;MQ0=1;MQRankSum=0.903;QD=26.66;ReadPosRankSum=-0.066;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:20,91:111:99:2988,0,335
+chr1	40816	.	G	A	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.969;DP=113;Dels=0.00;FS=9.418;HaplotypeScore=31.1266;MLEAC=1;MLEAF=0.500;MQ=45.86;MQ0=1;MQRankSum=-1.806;QD=4.02;ReadPosRankSum=0.667;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:93,20:113:99:483,0,2777
+chr1	40819	.	T	C	4137.77	.	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=28.2112;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=1;QD=33.70;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,115:115:99:4166,316,0
+chr1	40830	.	G	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=19.6261;MLEAC=1;MLEAF=0.500;MQ=46.71;MQ0=1;MQRankSum=-2.358;QD=0.59;ReadPosRankSum=1.325;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:105,15:120:99:99,0,3552
+chr1	40833	.	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;DP=124;Dels=0.00;FS=3.723;HaplotypeScore=34.4038;MLEAC=1;MLEAF=0.500;MQ=46.84;MQ0=1;MQRankSum=-1.292;QD=2.15;ReadPosRankSum=-0.332;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:104,20:124:99:295,0,3416
+chr1	40839	.	T	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;DP=119;Dels=0.00;FS=8.132;HaplotypeScore=32.8812;MLEAC=1;MLEAF=0.500;MQ=47.25;MQ0=1;MQRankSum=-0.467;QD=1.86;ReadPosRankSum=0.697;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:102,17:119:99:249,0,3382
+chr1	40841	.	T	A,C	2.14748372629E9	.	AC=1,1;AF=0.500,0.500;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=19.0976;MLEAC=1,1;MLEAF=0.500,0.500;MQ=47.51;MQ0=1;QD=27.95;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/2:0,17,105:122:99:4117,3653,3614,465,0,164
+chr1	40851	.	C	G	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;DP=129;Dels=0.00;FS=22.816;HaplotypeScore=16.7771;MLEAC=1;MLEAF=0.500;MQ=48.66;MQ0=1;MQRankSum=2.703;QD=6.11;ReadPosRankSum=-0.307;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:99,30:129:99:816,0,3155
+chr1	40863	.	T	C	1531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=118;Dels=0.00;FS=4.700;HaplotypeScore=22.9854;MLEAC=1;MLEAF=0.500;MQ=49.98;MQ0=0;MQRankSum=-4.335;QD=12.98;ReadPosRankSum=0.964;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:61,57:118:99:1560,0,2100
+chr1	40865	.	A	G	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DP=120;Dels=0.00;FS=2.661;HaplotypeScore=22.9854;MLEAC=1;MLEAF=0.500;MQ=50.52;MQ0=0;MQRankSum=-2.918;QD=7.64;ReadPosRankSum=0.770;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:84,36:120:99:945,0,2823
+chr1	40881	.	T	C	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DP=113;Dels=0.00;FS=6.057;HaplotypeScore=16.0432;MLEAC=1;MLEAF=0.500;MQ=52.96;MQ0=0;MQRankSum=-3.511;QD=16.67;ReadPosRankSum=0.917;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,61:113:99:1912,0,1701
+chr1	40884	.	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;DP=112;Dels=0.00;FS=4.487;HaplotypeScore=16.0432;MLEAC=1;MLEAF=0.500;MQ=53.28;MQ0=0;MQRankSum=0.616;QD=0.92;ReadPosRankSum=1.745;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:100,12:112:99:131,0,3505
+chr1	40890	.	T	C	4000.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.376;DP=108;Dels=0.00;FS=3.638;HaplotypeScore=17.6640;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-1.570;QD=32.92;ReadPosRankSum=-0.761;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:1,106:108:99:4029,271,0
+chr1	40908	.	T	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8927;MLEAC=1;MLEAF=0.500;MQ=54.73;MQ0=0;MQRankSum=-4.713;QD=3.49;ReadPosRankSum=-0.222;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:97,22:119:99:444,0,3404
+chr1	40913	.	A	T	4662.77	.	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8494;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=32.82;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,119:120:99:4691,355,0
+chr1	40932	.	T	C	4651.77	.	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=29.4883;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=32.19;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,121:122:99:4680,358,0
+chr1	40939	.	C	T	1562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DP=122;Dels=0.00;FS=5.633;HaplotypeScore=53.6940;MLEAC=1;MLEAF=0.500;MQ=53.55;MQ0=0;MQRankSum=-6.420;QD=12.81;ReadPosRankSum=-1.451;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:69,53:122:99:1591,0,2373
+chr1	40942	.	G	C	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DP=117;Dels=0.00;FS=3.010;HaplotypeScore=52.6941;MLEAC=1;MLEAF=0.500;MQ=53.19;MQ0=0;MQRankSum=2.832;QD=5.14;ReadPosRankSum=2.886;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:92,24:117:99:630,0,3142
+chr1	40949	.	A	T	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;DP=116;Dels=0.00;FS=1.882;HaplotypeScore=91.2099;MLEAC=1;MLEAF=0.500;MQ=51.71;MQ0=1;MQRankSum=2.660;QD=5.38;ReadPosRankSum=3.699;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:91,25:116:99:652,0,3037
+chr1	40953	.	G	T	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DP=114;Dels=0.00;FS=4.536;HaplotypeScore=90.5131;MLEAC=1;MLEAF=0.500;MQ=51.22;MQ0=1;MQRankSum=-6.362;QD=4.05;ReadPosRankSum=-0.083;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,25:114:99:490,0,2704
+chr1	40963	.	C	T	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;DP=115;Dels=0.00;FS=2.488;HaplotypeScore=45.8271;MLEAC=1;MLEAF=0.500;MQ=50.61;MQ0=1;MQRankSum=-6.812;QD=9.88;ReadPosRankSum=1.154;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,45:115:99:1164,0,2427
+chr1	40965	.	A	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DP=111;Dels=0.00;FS=1.995;HaplotypeScore=24.4867;MLEAC=1;MLEAF=0.500;MQ=50.29;MQ0=1;MQRankSum=-5.421;QD=2.79;ReadPosRankSum=1.162;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:89,22:111:99:338,0,3112
+chr1	40977	.	A	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.5174;MLEAC=1;MLEAF=0.500;MQ=47.69;MQ0=1;MQRankSum=3.438;QD=5.38;ReadPosRankSum=0.935;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:81,25:106:99:598,0,2425
+chr1	40988	.	C	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DP=97;Dels=0.00;FS=7.020;HaplotypeScore=26.1924;MLEAC=1;MLEAF=0.500;MQ=46.91;MQ0=1;MQRankSum=1.225;QD=3.47;ReadPosRankSum=-0.080;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:79,18:97:99:365,0,2417
+chr1	40989	.	T	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DP=94;Dels=0.00;FS=7.233;HaplotypeScore=25.1927;MLEAC=1;MLEAF=0.500;MQ=46.44;MQ0=1;MQRankSum=1.405;QD=3.77;ReadPosRankSum=-0.199;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:76,18:94:99:383,0,2284
+chr1	40990	.	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=25.1927;MLEAC=1;MLEAF=0.500;MQ=46.03;MQ0=1;MQRankSum=-4.177;QD=1.04;ReadPosRankSum=2.701;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,15:92:99:124,0,2472
+chr1	40992	.	A	T	2915.77	.	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=105.3192;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=1;QD=33.13;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2944,235,0
+chr1	41013	.	C	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;DP=84;Dels=0.00;FS=15.260;HaplotypeScore=153.8354;MLEAC=1;MLEAF=0.500;MQ=39.77;MQ0=1;MQRankSum=0.325;QD=5.07;ReadPosRankSum=1.047;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,22:84:99:454,0,1750
+chr1	41015	.	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DP=85;Dels=0.00;FS=1.324;HaplotypeScore=57.0601;MLEAC=1;MLEAF=0.500;MQ=39.97;MQ0=1;MQRankSum=-2.501;QD=0.41;ReadPosRankSum=0.333;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,10:85:63:63,0,2037
+chr1	41017	.	T	C	2590.77	.	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=57.5017;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=1;QD=29.78;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2619,217,0
+chr1	41026	.	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;DP=97;Dels=0.00;FS=3.387;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=40.65;MQ0=1;MQRankSum=1.677;QD=0.36;ReadPosRankSum=-2.910;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:88,9:97:63:63,0,2499
+chr1	41043	.	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=33.8776;MLEAC=1;MLEAF=0.500;MQ=42.40;MQ0=1;MQRankSum=0.065;QD=1.44;ReadPosRankSum=0.698;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:80,12:92:99:161,0,2256
+chr1	41046	.	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.146;DP=89;Dels=0.00;FS=6.728;HaplotypeScore=67.8534;MLEAC=1;MLEAF=0.500;MQ=42.77;MQ0=1;MQRankSum=-2.122;QD=0.77;ReadPosRankSum=1.757;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,12:89:97:97,0,2293
+chr1	41049	.	T	C	2779.77	.	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=92.5392;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=1;QD=32.32;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2808,226,0
+chr1	41054	.	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;DP=87;Dels=0.00;FS=2.873;HaplotypeScore=97.5277;MLEAC=1;MLEAF=0.500;MQ=43.55;MQ0=0;MQRankSum=-1.875;QD=1.18;ReadPosRankSum=1.399;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:74,13:87:99:131,0,2231
+chr1	41056	.	G	T	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;DP=86;Dels=0.00;FS=12.658;HaplotypeScore=70.2196;MLEAC=1;MLEAF=0.500;MQ=43.45;MQ0=0;MQRankSum=0.504;QD=8.25;ReadPosRankSum=-0.459;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,31:86:99:738,0,1637
+chr1	41059	.	A	T	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;DP=85;Dels=0.00;FS=1.923;HaplotypeScore=62.5392;MLEAC=1;MLEAF=0.500;MQ=43.72;MQ0=0;MQRankSum=-1.385;QD=7.07;ReadPosRankSum=2.150;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:53,28:85:99:629,0,1583
+chr1	41064	.	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=88;Dels=0.00;FS=1.164;HaplotypeScore=86.8690;MLEAC=1;MLEAF=0.500;MQ=44.00;MQ0=0;MQRankSum=-1.609;QD=1.93;ReadPosRankSum=1.221;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,15:88:99:198,0,2343
+chr1	41084	.	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533;DP=106;Dels=0.00;FS=1.092;HaplotypeScore=17.4304;MLEAC=1;MLEAF=0.500;MQ=47.41;MQ0=0;MQRankSum=-1.180;QD=1.68;ReadPosRankSum=-2.114;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:92,14:106:99:206,0,3074
+chr1	41100	.	C	A	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DP=116;Dels=0.00;FS=0.765;HaplotypeScore=58.6282;MLEAC=1;MLEAF=0.500;MQ=48.59;MQ0=0;MQRankSum=0.652;QD=7.64;ReadPosRankSum=0.622;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:82,34:116:99:915,0,2691
+chr1	41103	.	C	T	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020;DP=114;Dels=0.00;FS=7.549;HaplotypeScore=60.6270;MLEAC=1;MLEAF=0.500;MQ=49.00;MQ0=0;MQRankSum=0.692;QD=5.02;ReadPosRankSum=-1.089;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:89,25:114:99:601,0,2970
+chr1	41108	.	G	A	2256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;DP=104;Dels=0.00;FS=1.668;HaplotypeScore=55.9666;MLEAC=1;MLEAF=0.500;MQ=50.77;MQ0=0;MQRankSum=-3.973;QD=21.70;ReadPosRankSum=0.215;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:36,68:104:99:2285,0,1135
+chr1	41121	.	C	T	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;DP=106;Dels=0.00;FS=8.022;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=51.15;MQ0=0;MQRankSum=-4.307;QD=11.10;ReadPosRankSum=1.217;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:66,39:106:99:1205,0,2309
+chr1	41142	.	C	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;DP=93;Dels=0.00;FS=4.344;HaplotypeScore=109.3818;MLEAC=1;MLEAF=0.500;MQ=50.67;MQ0=0;MQRankSum=-3.272;QD=1.78;ReadPosRankSum=-0.097;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:81,12:93:99:194,0,2886
+chr1	41167	.	T	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DP=80;Dels=0.00;FS=2.024;HaplotypeScore=81.4181;MLEAC=1;MLEAF=0.500;MQ=52.03;MQ0=0;MQRankSum=-5.890;QD=8.08;ReadPosRankSum=2.521;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,24:80:99:675,0,1872
+chr1	41168	.	C	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;DP=85;Dels=0.00;FS=1.308;HaplotypeScore=70.7865;MLEAC=1;MLEAF=0.500;MQ=51.72;MQ0=0;MQRankSum=-3.430;QD=1.28;ReadPosRankSum=1.930;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:75,10:85:99:137,0,2676
+chr1	41170	.	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=86;Dels=0.00;FS=2.556;HaplotypeScore=38.2377;MLEAC=1;MLEAF=0.500;MQ=51.83;MQ0=0;MQRankSum=-4.581;QD=2.28;ReadPosRankSum=2.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,13:86:99:224,0,2606
+chr1	41179	.	T	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=18.4473;MLEAC=1;MLEAF=0.500;MQ=51.43;MQ0=0;MQRankSum=-4.595;QD=7.31;ReadPosRankSum=-2.191;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,23:85:99:650,0,2189
+chr1	41195	.	C	G	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;DP=99;Dels=0.00;FS=3.526;HaplotypeScore=25.2904;MLEAC=1;MLEAF=0.500;MQ=52.58;MQ0=0;MQRankSum=3.710;QD=4.40;ReadPosRankSum=1.346;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:80,19:99:99:464,0,2786
+chr1	41199	.	C	T	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DP=96;Dels=0.00;FS=4.808;HaplotypeScore=40.2922;MLEAC=1;MLEAF=0.500;MQ=52.58;MQ0=0;MQRankSum=2.060;QD=5.76;ReadPosRankSum=0.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,22:96:99:581,0,2606
+chr1	41208	.	T	C	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.073;DP=95;Dels=0.00;FS=3.709;HaplotypeScore=57.4526;MLEAC=1;MLEAF=0.500;MQ=52.97;MQ0=0;MQRankSum=3.607;QD=4.12;ReadPosRankSum=2.665;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:78,17:95:99:420,0,2797
+chr1	41212	.	A	C	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;DP=95;Dels=0.00;FS=0.946;HaplotypeScore=22.4583;MLEAC=1;MLEAF=0.500;MQ=53.16;MQ0=0;MQRankSum=-3.985;QD=5.00;ReadPosRankSum=-1.830;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:75,20:95:99:503,0,2582
+chr1	41218	.	T	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;DP=96;Dels=0.00;FS=2.139;HaplotypeScore=56.9737;MLEAC=1;MLEAF=0.500;MQ=53.88;MQ0=0;MQRankSum=4.681;QD=4.80;ReadPosRankSum=1.416;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,19:96:99:489,0,2728
+chr1	41224	.	C	T	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;DP=92;Dels=0.00;FS=8.582;HaplotypeScore=46.8527;MLEAC=1;MLEAF=0.500;MQ=54.51;MQ0=0;MQRankSum=-6.262;QD=11.77;ReadPosRankSum=0.442;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,36:92:99:1111,0,1880
+chr1	41227	.	A	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;DP=95;Dels=0.00;FS=1.160;HaplotypeScore=73.8186;MLEAC=1;MLEAF=0.500;MQ=54.83;MQ0=0;MQRankSum=-3.984;QD=2.05;ReadPosRankSum=1.822;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:81,14:95:99:223,0,2919
+chr1	41234	.	A	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;DP=100;Dels=0.00;FS=2.117;HaplotypeScore=65.6546;MLEAC=1;MLEAF=0.500;MQ=54.83;MQ0=0;MQRankSum=2.503;QD=4.66;ReadPosRankSum=-0.702;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:80,20:100:99:494,0,2851
+chr1	41236	.	T	C	22.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DP=101;Dels=0.00;FS=3.152;HaplotypeScore=35.6864;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=-3.963;QD=0.23;ReadPosRankSum=0.495;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:92,9:101:51:51,0,3322
+chr1	41244	.	C	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;DP=106;Dels=0.00;FS=4.109;HaplotypeScore=48.8041;MLEAC=1;MLEAF=0.500;MQ=54.46;MQ0=0;MQRankSum=-2.340;QD=1.59;ReadPosRankSum=0.828;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:93,13:106:99:197,0,3333
+chr1	41248	.	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DP=109;Dels=0.00;FS=1.115;HaplotypeScore=41.7628;MLEAC=1;MLEAF=0.500;MQ=54.29;MQ0=0;MQRankSum=-3.636;QD=1.78;ReadPosRankSum=0.974;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:95,14:109:99:222,0,3400
+chr1	41253	.	T	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.602;DP=119;Dels=0.00;FS=6.215;HaplotypeScore=39.9312;MLEAC=1;MLEAF=0.500;MQ=53.40;MQ0=1;MQRankSum=0.176;QD=4.21;ReadPosRankSum=1.441;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:97,22:119:99:529,0,3111
+chr1	41254	.	A	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;DP=120;Dels=0.00;FS=15.351;HaplotypeScore=39.9312;MLEAC=1;MLEAF=0.500;MQ=53.38;MQ0=1;MQRankSum=-4.673;QD=0.63;ReadPosRankSum=-0.660;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:107,13:120:99:104,0,3713
+chr1	41267	.	T	A	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DP=124;Dels=0.00;FS=10.609;HaplotypeScore=25.9401;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=1;MQRankSum=-7.080;QD=11.10;ReadPosRankSum=0.316;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,47:124:99:1405,0,2587
+chr1	41268	.	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=124;Dels=0.00;FS=4.257;HaplotypeScore=82.8206;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=1;MQRankSum=-0.901;QD=0.91;ReadPosRankSum=2.028;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:111,13:124:99:141,0,3898
+chr1	41278	.	G	A	2734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=36.6252;MLEAC=1;MLEAF=0.500;MQ=52.12;MQ0=1;MQRankSum=1.173;QD=22.98;ReadPosRankSum=0.188;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,80:119:99:2763,0,670
+chr1	41290	.	C	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5225;MLEAC=1;MLEAF=0.500;MQ=51.25;MQ0=1;MQRankSum=-4.504;QD=5.81;ReadPosRankSum=0.748;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:86,27:114:99:691,0,2884
+chr1	41305	.	C	T	1582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DP=107;Dels=0.00;FS=1.558;HaplotypeScore=63.7217;MLEAC=1;MLEAF=0.500;MQ=49.95;MQ0=1;MQRankSum=-7.979;QD=14.79;ReadPosRankSum=1.488;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1611,0,1766
+chr1	41308	.	T	C	1593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=62.7218;MLEAC=1;MLEAF=0.500;MQ=49.72;MQ0=1;MQRankSum=-8.201;QD=14.90;ReadPosRankSum=0.708;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,56:107:99:1622,0,1675
+chr1	41310	.	C	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;DP=105;Dels=0.00;FS=0.974;HaplotypeScore=62.7218;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=1;MQRankSum=-2.583;QD=3.70;ReadPosRankSum=1.668;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:84,21:105:99:417,0,2941
+chr1	41313	.	T	C	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;DP=103;Dels=0.00;FS=0.870;HaplotypeScore=103.1863;MLEAC=1;MLEAF=0.500;MQ=49.22;MQ0=1;MQRankSum=4.857;QD=7.01;ReadPosRankSum=0.426;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,26:103:99:750,0,2499
+chr1	41314	.	G	A,T	1081.29	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.513;DP=103;Dels=0.00;FS=0.976;HaplotypeScore=42.1919;MLEAC=1,1;MLEAF=0.500,0.500;MQ=49.10;MQ0=1;MQRankSum=-4.684;QD=10.50;ReadPosRankSum=-0.190;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/2:21,25,57:103:99:1879,1019,1719,147,0,769
+chr1	41322	.	G	A	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;DP=107;Dels=0.00;FS=1.576;HaplotypeScore=70.4344;MLEAC=1;MLEAF=0.500;MQ=48.93;MQ0=1;MQRankSum=1.616;QD=13.30;ReadPosRankSum=0.279;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,49:107:99:1451,0,1855
+chr1	41331	.	C	T	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;DP=103;Dels=0.00;FS=4.657;HaplotypeScore=99.4972;MLEAC=1;MLEAF=0.500;MQ=48.40;MQ0=1;MQRankSum=4.235;QD=5.51;ReadPosRankSum=2.095;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:81,22:103:99:596,0,2616
+chr1	41334	.	A	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DP=101;Dels=0.00;FS=2.142;HaplotypeScore=117.9442;MLEAC=1;MLEAF=0.500;MQ=48.38;MQ0=1;MQRankSum=-2.696;QD=3.51;ReadPosRankSum=0.274;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:82,19:101:99:383,0,2677
+chr1	41335	.	C	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;DP=98;Dels=0.00;FS=0.996;HaplotypeScore=118.9429;MLEAC=1;MLEAF=0.500;MQ=48.62;MQ0=1;MQRankSum=-3.055;QD=4.25;ReadPosRankSum=-0.712;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:71,20:98:99:445,0,2383
+chr1	41337	.	G	A	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;DP=99;Dels=0.00;FS=3.218;HaplotypeScore=122.9204;MLEAC=1;MLEAF=0.500;MQ=48.76;MQ0=1;MQRankSum=2.970;QD=6.55;ReadPosRankSum=0.120;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:75,24:99:99:677,0,2337
+chr1	41343	.	G	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=74.5936;MLEAC=1;MLEAF=0.500;MQ=48.47;MQ0=1;MQRankSum=-3.683;QD=5.19;ReadPosRankSum=1.208;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,25:98:99:537,0,2493
+chr1	41365	.	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;DP=86;Dels=0.00;FS=2.433;HaplotypeScore=14.9634;MLEAC=1;MLEAF=0.500;MQ=47.69;MQ0=0;MQRankSum=1.753;QD=3.47;ReadPosRankSum=1.923;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:71,15:86:99:327,0,2341
+chr1	41375	.	T	C	2374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DP=87;Dels=0.00;FS=1.026;HaplotypeScore=33.9683;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=0;MQRankSum=-1.561;QD=27.30;ReadPosRankSum=-1.912;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:16,71:87:99:2403,0,364
+chr1	41376	.	T	G	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;DP=87;Dels=0.00;FS=4.036;HaplotypeScore=34.9615;MLEAC=1;MLEAF=0.500;MQ=49.58;MQ0=0;MQRankSum=-0.455;QD=3.19;ReadPosRankSum=-0.612;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:72,15:87:99:306,0,2524
+chr1	41377	.	T	C	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;DP=88;Dels=0.00;FS=0.884;HaplotypeScore=39.7608;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=0;MQRankSum=-0.490;QD=7.20;ReadPosRankSum=3.571;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,25:88:99:662,0,2148
+chr1	41395	.	A	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;DP=84;Dels=0.00;FS=1.101;HaplotypeScore=112.5646;MLEAC=1;MLEAF=0.500;MQ=48.92;MQ0=0;MQRankSum=2.499;QD=3.81;ReadPosRankSum=0.199;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:69,15:84:99:348,0,2361
+chr1	41396	.	A	T	1616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;DP=79;Dels=0.00;FS=3.137;HaplotypeScore=87.3597;MLEAC=1;MLEAF=0.500;MQ=48.75;MQ0=0;MQRankSum=-0.300;QD=20.47;ReadPosRankSum=2.365;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:29,50:79:99:1645,0,823
+chr1	41398	.	G	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;DP=81;Dels=0.00;FS=3.484;HaplotypeScore=80.5740;MLEAC=1;MLEAF=0.500;MQ=49.12;MQ0=0;MQRankSum=-1.669;QD=8.63;ReadPosRankSum=1.405;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,24:81:99:727,0,1467
+chr1	41404	.	T	C	2294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DP=97;Dels=0.00;FS=0.832;HaplotypeScore=104.9252;MLEAC=1;MLEAF=0.500;MQ=48.15;MQ0=0;MQRankSum=4.062;QD=23.66;ReadPosRankSum=2.116;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:29,68:97:99:2323,0,710
+chr1	41409	.	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;DP=105;Dels=0.00;FS=11.861;HaplotypeScore=51.0534;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=0;MQRankSum=-4.669;QD=0.65;ReadPosRankSum=-2.162;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:91,13:105:96:96,0,3129
+chr1	41415	.	G	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;DP=107;Dels=0.00;FS=11.635;HaplotypeScore=15.7947;MLEAC=1;MLEAF=0.500;MQ=48.44;MQ0=0;MQRankSum=1.795;QD=3.14;ReadPosRankSum=-0.937;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:89,18:107:99:364,0,2936
+chr1	41433	.	A	G	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;DP=111;Dels=0.00;FS=3.563;HaplotypeScore=105.5605;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=0;MQRankSum=-5.707;QD=15.13;ReadPosRankSum=1.023;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:53,57:111:99:1708,0,1780
+chr1	41435	.	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;DP=109;Dels=0.00;FS=17.321;HaplotypeScore=102.6178;MLEAC=1;MLEAF=0.500;MQ=49.30;MQ0=0;MQRankSum=-4.352;QD=0.94;ReadPosRankSum=2.286;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:96,13:109:99:131,0,3341
+chr1	41438	.	T	G	3087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DP=111;Dels=0.00;FS=11.712;HaplotypeScore=118.7379;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=0;MQRankSum=0.604;QD=27.82;ReadPosRankSum=0.156;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:18,93:111:99:3116,0,375
+chr1	41441	.	C	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DP=115;Dels=0.00;FS=6.121;HaplotypeScore=118.1844;MLEAC=1;MLEAF=0.500;MQ=49.65;MQ0=0;MQRankSum=5.083;QD=5.02;ReadPosRankSum=-0.127;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:91,24:115:99:605,0,2982
+chr1	41447	.	C	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;DP=113;Dels=0.00;FS=2.061;HaplotypeScore=55.8367;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=-4.171;QD=3.53;ReadPosRankSum=-0.765;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:90,22:113:99:427,0,3162
+chr1	41451	.	T	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;DP=114;Dels=0.00;FS=25.914;HaplotypeScore=63.6216;MLEAC=1;MLEAF=0.500;MQ=50.72;MQ0=0;MQRankSum=-4.658;QD=1.12;ReadPosRankSum=3.544;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:100,14:114:99:156,0,3508
+chr1	41458	.	T	G	2070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.9365;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=-8.252;QD=17.55;ReadPosRankSum=0.234;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,67:118:99:2099,0,1630
+chr1	41472	.	G	A	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DP=118;Dels=0.00;FS=4.281;HaplotypeScore=23.8857;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=0;MQRankSum=4.715;QD=5.35;ReadPosRankSum=1.357;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:93,25:118:99:660,0,3092
+chr1	41477	.	C	T	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;DP=116;Dels=0.00;FS=24.979;HaplotypeScore=26.4514;MLEAC=1;MLEAF=0.500;MQ=51.45;MQ0=0;MQRankSum=-4.819;QD=2.26;ReadPosRankSum=-1.044;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:98,17:116:99:290,0,3370
+chr1	41490	.	C	T	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;DP=120;Dels=0.00;FS=7.377;HaplotypeScore=103.2713;MLEAC=1;MLEAF=0.500;MQ=51.74;MQ0=0;MQRankSum=-4.581;QD=11.23;ReadPosRankSum=-1.204;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,43:120:99:1376,0,2560
+chr1	41492	.	G	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;DP=122;Dels=0.00;FS=4.136;HaplotypeScore=109.9755;MLEAC=1;MLEAF=0.500;MQ=51.38;MQ0=0;MQRankSum=-5.075;QD=4.19;ReadPosRankSum=0.670;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:90,27:122:99:540,0,3167
+chr1	41495	.	C	T	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;DP=120;Dels=0.00;FS=6.076;HaplotypeScore=130.0290;MLEAC=1;MLEAF=0.500;MQ=51.38;MQ0=0;MQRankSum=-4.101;QD=10.63;ReadPosRankSum=-0.859;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,42:120:99:1304,0,2562
+chr1	41499	.	C	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;DP=121;Dels=0.00;FS=8.830;HaplotypeScore=131.1958;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=4.822;QD=5.84;ReadPosRankSum=0.103;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:94,27:121:99:735,0,3300
+chr1	41500	.	C	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=123;Dels=0.00;FS=4.152;HaplotypeScore=131.1958;MLEAC=1;MLEAF=0.500;MQ=51.46;MQ0=0;MQRankSum=-4.922;QD=4.27;ReadPosRankSum=2.190;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:97,26:123:99:554,0,3500
+chr1	41503	.	T	C	2252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DP=119;Dels=0.00;FS=4.440;HaplotypeScore=73.1398;MLEAC=1;MLEAF=0.500;MQ=51.43;MQ0=0;MQRankSum=-7.475;QD=18.93;ReadPosRankSum=0.616;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,69:119:99:2281,0,1652
+chr1	41543	.	G	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=33.5509;MLEAC=1;MLEAF=0.500;MQ=45.79;MQ0=0;MQRankSum=1.422;QD=1.67;ReadPosRankSum=0.051;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:82,12:94:99:185,0,2657
+chr1	41544	.	C	A	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;DP=94;Dels=0.00;FS=5.349;HaplotypeScore=33.5509;MLEAC=1;MLEAF=0.500;MQ=45.79;MQ0=0;MQRankSum=0.591;QD=4.56;ReadPosRankSum=-0.548;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,20:94:99:457,0,2138
+chr1	41546	.	A	G	3381.77	.	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=27.5019;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=31.33;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,94:95:99:3410,268,0
+chr1	41562	.	G	A	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DP=90;Dels=0.00;FS=3.007;HaplotypeScore=34.8266;MLEAC=1;MLEAF=0.500;MQ=42.64;MQ0=0;MQRankSum=-0.632;QD=6.88;ReadPosRankSum=0.083;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,28:90:99:647,0,1945
+chr1	41564	.	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=55.5562;MLEAC=1;MLEAF=0.500;MQ=41.85;MQ0=0;MQRankSum=1.630;QD=1.23;ReadPosRankSum=1.364;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,10:83:99:130,0,2184
+chr1	41566	.	C	A	2583.77	.	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=62.4145;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;QD=33.56;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2612,211,0
+chr1	41569	.	T	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;DP=76;Dels=0.00;FS=3.973;HaplotypeScore=65.4132;MLEAC=1;MLEAF=0.500;MQ=40.71;MQ0=0;MQRankSum=1.851;QD=5.79;ReadPosRankSum=0.055;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,18:76:99:468,0,1633
+chr1	41572	.	T	C	2032.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;DP=75;Dels=0.00;FS=1.682;HaplotypeScore=65.4132;MLEAC=1;MLEAF=0.500;MQ=40.70;MQ0=0;MQRankSum=-0.869;QD=27.11;ReadPosRankSum=-0.537;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:6,69:75:15:2061,0,15
+chr1	41574	.	G	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.327;DP=76;Dels=0.00;FS=3.699;HaplotypeScore=53.4650;MLEAC=1;MLEAF=0.500;MQ=40.15;MQ0=0;MQRankSum=0.032;QD=9.00;ReadPosRankSum=3.623;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,25:76:99:712,0,1145
+chr1	41576	.	A	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;DP=83;Dels=0.00;FS=1.310;HaplotypeScore=45.4818;MLEAC=1;MLEAF=0.500;MQ=40.13;MQ0=0;MQRankSum=-1.812;QD=0.39;ReadPosRankSum=-0.301;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,10:83:61:61,0,2187
+chr1	41587	.	C	T	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=59.1819;MLEAC=1;MLEAF=0.500;MQ=39.01;MQ0=0;MQRankSum=2.270;QD=10.01;ReadPosRankSum=1.892;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:60,34:94:99:969,0,1542
+chr1	41588	.	T	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=56.1832;MLEAC=1;MLEAF=0.500;MQ=38.88;MQ0=0;MQRankSum=-1.330;QD=3.74;ReadPosRankSum=2.028;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:71,21:92:99:372,0,2076
+chr1	41593	.	A	G	2833.77	.	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=51.2291;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=31.84;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2862,241,0
+chr1	41597	.	T	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DP=93;Dels=0.00;FS=1.013;HaplotypeScore=58.9239;MLEAC=1;MLEAF=0.500;MQ=39.40;MQ0=0;MQRankSum=-1.253;QD=3.26;ReadPosRankSum=-0.777;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:74,19:93:99:331,0,2049
+chr1	41612	.	T	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;DP=94;Dels=0.00;FS=3.843;HaplotypeScore=30.0447;MLEAC=1;MLEAF=0.500;MQ=39.90;MQ0=0;MQRankSum=-1.714;QD=1.66;ReadPosRankSum=-0.857;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:79,15:94:99:184,0,2308
+chr1	41623	.	C	T	21.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;DP=95;Dels=0.00;FS=1.274;HaplotypeScore=34.4885;MLEAC=1;MLEAF=0.500;MQ=41.23;MQ0=0;MQRankSum=-1.146;QD=0.23;ReadPosRankSum=-2.116;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:85,10:95:50:50,0,2553
+chr1	41633	.	C	T	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.040;DP=97;Dels=0.00;FS=0.962;HaplotypeScore=42.7026;MLEAC=1;MLEAF=0.500;MQ=41.75;MQ0=0;MQRankSum=-1.768;QD=4.76;ReadPosRankSum=1.633;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:74,23:97:99:490,0,2247
+chr1	41638	.	T	G	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DP=99;Dels=0.00;FS=11.653;HaplotypeScore=45.8263;MLEAC=1;MLEAF=0.500;MQ=42.14;MQ0=0;MQRankSum=1.485;QD=4.36;ReadPosRankSum=-0.312;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:78,21:99:99:460,0,2342
+chr1	41640	.	A	T	3476.77	.	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=43.8379;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=34.09;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3505,280,0
+chr1	41642	.	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;DP=102;Dels=0.00;FS=4.287;HaplotypeScore=43.8379;MLEAC=1;MLEAF=0.500;MQ=42.97;MQ0=0;MQRankSum=-1.538;QD=0.99;ReadPosRankSum=0.016;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:87,12:102:99:129,0,2667
+chr1	41645	.	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=106;Dels=0.00;FS=2.304;HaplotypeScore=28.8553;MLEAC=1;MLEAF=0.500;MQ=42.92;MQ0=0;MQRankSum=-1.566;QD=1.82;ReadPosRankSum=-1.328;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:90,16:106:99:221,0,2816
+chr1	41657	.	T	C	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;DP=113;Dels=0.00;FS=4.518;HaplotypeScore=64.9583;MLEAC=1;MLEAF=0.500;MQ=44.13;MQ0=0;MQRankSum=-2.414;QD=4.06;ReadPosRankSum=1.615;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:90,23:113:99:487,0,2786
+chr1	41663	.	A	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;DP=114;Dels=0.00;FS=3.858;HaplotypeScore=81.6675;MLEAC=1;MLEAF=0.500;MQ=45.09;MQ0=0;MQRankSum=-1.442;QD=1.36;ReadPosRankSum=1.039;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:99,15:114:99:183,0,3367
+chr1	41665	.	T	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;DP=113;Dels=0.00;FS=3.826;HaplotypeScore=81.6675;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=0;MQRankSum=-1.612;QD=1.48;ReadPosRankSum=1.307;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:98,15:113:99:196,0,3343
+chr1	41669	.	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;DP=119;Dels=0.00;FS=4.933;HaplotypeScore=68.0952;MLEAC=1;MLEAF=0.500;MQ=45.13;MQ0=0;MQRankSum=-1.839;QD=2.10;ReadPosRankSum=0.185;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:100,19:119:99:278,0,3198
+chr1	41678	.	T	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.051;DP=115;Dels=0.00;FS=6.885;HaplotypeScore=79.4081;MLEAC=1;MLEAF=0.500;MQ=46.17;MQ0=0;MQRankSum=-3.479;QD=3.11;ReadPosRankSum=3.870;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:95,20:115:99:386,0,3047
+chr1	41679	.	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;DP=111;Dels=0.00;FS=3.602;HaplotypeScore=78.4123;MLEAC=1;MLEAF=0.500;MQ=46.33;MQ0=0;MQRankSum=-3.517;QD=2.09;ReadPosRankSum=-0.217;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:94,17:111:99:260,0,3158
+chr1	41680	.	A	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=108;Dels=0.00;FS=1.071;HaplotypeScore=58.7186;MLEAC=1;MLEAF=0.500;MQ=46.44;MQ0=0;MQRankSum=-3.109;QD=1.71;ReadPosRankSum=0.355;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:93,15:108:99:213,0,3172
+chr1	41687	.	G	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;DP=112;Dels=0.00;FS=2.333;HaplotypeScore=58.7186;MLEAC=1;MLEAF=0.500;MQ=45.86;MQ0=0;MQRankSum=-2.828;QD=1.31;ReadPosRankSum=-0.085;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:97,15:112:99:175,0,3221
+chr1	41717	.	G	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;DP=101;Dels=0.00;FS=10.379;HaplotypeScore=39.1666;MLEAC=1;MLEAF=0.500;MQ=42.12;MQ0=0;MQRankSum=-0.222;QD=1.90;ReadPosRankSum=2.162;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:85,15:101:99:220,0,2653
+chr1	41723	.	C	T	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.845;DP=104;Dels=0.00;FS=7.631;HaplotypeScore=57.0647;MLEAC=1;MLEAF=0.500;MQ=41.47;MQ0=0;MQRankSum=0.585;QD=7.04;ReadPosRankSum=0.319;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:74,30:104:99:760,0,2081
+chr1	41727	.	T	C	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;DP=103;Dels=0.00;FS=25.678;HaplotypeScore=89.0081;MLEAC=1;MLEAF=0.500;MQ=41.42;MQ0=0;MQRankSum=-2.718;QD=10.78;ReadPosRankSum=-0.518;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:60,43:103:99:1139,0,1804
+chr1	41733	.	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DP=101;Dels=0.00;FS=8.661;HaplotypeScore=68.3374;MLEAC=1;MLEAF=0.500;MQ=40.86;MQ0=0;MQRankSum=0.319;QD=1.26;ReadPosRankSum=0.380;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:88,13:101:99:155,0,2688
+chr1	41737	.	G	A	28.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;DP=98;Dels=0.00;FS=1.384;HaplotypeScore=41.8358;MLEAC=1;MLEAF=0.500;MQ=41.09;MQ0=0;MQRankSum=-0.972;QD=0.29;ReadPosRankSum=-2.706;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:89,9:98:57:57,0,2778
+chr1	41760	.	C	T	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DP=84;Dels=0.00;FS=4.638;HaplotypeScore=16.6682;MLEAC=1;MLEAF=0.500;MQ=38.94;MQ0=0;MQRankSum=2.250;QD=7.74;ReadPosRankSum=1.398;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,26:84:99:678,0,1606
+chr1	41790	.	C	T	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;DP=72;Dels=0.00;FS=0.904;HaplotypeScore=22.5923;MLEAC=1;MLEAF=0.500;MQ=41.27;MQ0=0;MQRankSum=1.292;QD=12.39;ReadPosRankSum=1.235;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:38,34:72:99:920,0,1016
+chr1	41797	.	T	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DP=56;Dels=0.00;FS=17.110;HaplotypeScore=26.2547;MLEAC=1;MLEAF=0.500;MQ=44.99;MQ0=0;MQRankSum=0.349;QD=4.44;ReadPosRankSum=1.488;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:44,12:56:99:277,0,1304
+chr1	41816	.	T	C	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;DP=70;Dels=0.00;FS=19.980;HaplotypeScore=12.2986;MLEAC=1;MLEAF=0.500;MQ=44.44;MQ0=0;MQRankSum=1.485;QD=5.95;ReadPosRankSum=0.894;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:52,18:70:99:445,0,1433
+chr1	41832	.	A	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;DP=72;Dels=0.00;FS=47.755;HaplotypeScore=25.8822;MLEAC=1;MLEAF=0.500;MQ=46.32;MQ0=1;MQRankSum=-5.914;QD=4.62;ReadPosRankSum=0.334;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:47,25:72:99:361,0,1584
+chr1	41839	.	T	C	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;DP=75;Dels=0.00;FS=46.700;HaplotypeScore=23.9247;MLEAC=1;MLEAF=0.500;MQ=46.37;MQ0=1;MQRankSum=-6.222;QD=5.20;ReadPosRankSum=0.198;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:48,27:75:99:418,0,1578
+chr1	41841	.	A	G	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DP=73;Dels=0.00;FS=17.617;HaplotypeScore=23.9247;MLEAC=1;MLEAF=0.500;MQ=46.38;MQ0=1;MQRankSum=3.993;QD=23.08;ReadPosRankSum=2.343;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:16,57:73:99:1713,0,219
+chr1	41855	.	A	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;DP=75;Dels=0.00;FS=34.596;HaplotypeScore=5.5757;MLEAC=1;MLEAF=0.500;MQ=46.37;MQ0=4;MQRankSum=-4.879;QD=2.30;ReadPosRankSum=2.181;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,17:75:99:201,0,1834
+chr1	41867	.	C	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=76;Dels=0.00;FS=7.041;HaplotypeScore=8.7104;MLEAC=1;MLEAF=0.500;MQ=45.61;MQ0=4;MQRankSum=4.354;QD=8.84;ReadPosRankSum=-1.798;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:52,24:76:99:700,0,1282
+chr1	41874	.	C	T	27.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DP=75;Dels=0.00;FS=14.535;HaplotypeScore=9.9168;MLEAC=1;MLEAF=0.500;MQ=45.20;MQ0=4;MQRankSum=-3.082;QD=0.37;ReadPosRankSum=2.228;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:66,9:75:56:56,0,1930
+chr1	41875	.	C	T	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;DP=73;Dels=0.00;FS=5.210;HaplotypeScore=9.9168;MLEAC=1;MLEAF=0.500;MQ=45.03;MQ0=4;MQRankSum=3.339;QD=10.49;ReadPosRankSum=-1.991;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:48,25:73:99:794,0,1121
+chr1	41887	.	T	C	2160.77	.	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=18.1629;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=4;QD=30.87;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2189,175,0
+chr1	41891	.	A	G	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=76.6927;MLEAC=1;MLEAF=0.500;MQ=45.05;MQ0=4;MQRankSum=1.412;QD=10.65;ReadPosRankSum=0.443;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,24:69:99:763,0,786
+chr1	41899	.	T	A	1216.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.812;DP=52;Dels=0.02;FS=6.283;HaplotypeScore=36.3869;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=4;MQRankSum=3.157;QD=23.40;ReadPosRankSum=-0.397;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:9,42:51:14:1245,14,0
+chr1	41900	.	T	C	1523.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.417;DP=52;Dels=0.00;FS=5.909;HaplotypeScore=45.3219;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=4;MQRankSum=3.172;QD=29.30;ReadPosRankSum=-0.304;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:9,43:52:29:1552,29,0
+chr1	41931	.	C	T	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=48.90;MQ0=3;MQRankSum=0.304;QD=11.97;ReadPosRankSum=1.648;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:34,31:65:99:806,0,1148
+chr1	41944	.	C	G	2024.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=32.52;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2053,156,0
+chr1	41946	.	T	C	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=51.55;MQ0=0;MQRankSum=-0.278;QD=14.11;ReadPosRankSum=1.445;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:30,23:53:99:776,0,935
+chr1	41952	.	T	C	1861.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=36.12;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1890,144,0
+chr1	41954	.	G	A	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.11;MQ0=0;MQRankSum=-0.942;QD=15.68;ReadPosRankSum=0.515;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,24:50:99:812,0,822
+chr1	41991	.	C	T	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;DP=56;Dels=0.00;FS=7.656;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=50.73;MQ0=0;MQRankSum=1.035;QD=12.37;ReadPosRankSum=0.654;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:32,24:56:99:721,0,1091
+chr1	42007	.	G	A	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.444;DP=51;Dels=0.00;FS=10.314;HaplotypeScore=2.4441;MLEAC=1;MLEAF=0.500;MQ=50.10;MQ0=0;MQRankSum=1.161;QD=13.51;ReadPosRankSum=-1.613;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:27,24:51:99:717,0,897
+chr1	42036	.	A	G	1816.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7826;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=1;QD=29.97;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1845,144,0
+chr1	42038	.	G	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.265;DP=49;Dels=0.00;FS=6.121;HaplotypeScore=5.5713;MLEAC=1;MLEAF=0.500;MQ=49.15;MQ0=1;MQRankSum=2.868;QD=10.28;ReadPosRankSum=0.582;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,21:49:99:532,0,906
+chr1	42046	.	G	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;DP=52;Dels=0.00;FS=2.418;HaplotypeScore=4.5717;MLEAC=1;MLEAF=0.500;MQ=49.00;MQ0=1;MQRankSum=-3.243;QD=17.82;ReadPosRankSum=-0.846;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,30:52:99:955,0,706
+chr1	42061	.	C	T	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;DP=49;Dels=0.00;FS=5.764;HaplotypeScore=4.9754;MLEAC=1;MLEAF=0.500;MQ=48.97;MQ0=1;MQRankSum=3.673;QD=14.79;ReadPosRankSum=0.103;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,23:49:99:753,0,792
+chr1	42071	.	C	T	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982;DP=45;Dels=0.00;FS=4.388;HaplotypeScore=4.7774;MLEAC=1;MLEAF=0.500;MQ=49.26;MQ0=1;MQRankSum=-4.302;QD=15.22;ReadPosRankSum=-0.554;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:20,25:45:99:713,0,676
+chr1	42082	.	T	C	1927.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=1;QD=25.16;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1956,150,0
+chr1	42083	.	G	T	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;DP=49;Dels=0.00;FS=4.144;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=49.42;MQ0=1;MQRankSum=-4.087;QD=13.97;ReadPosRankSum=1.417;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,23:49:99:713,0,858
+chr1	42106	.	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=2;QD=36.88;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2028,156,0
+chr1	42149	.	T	C	1779.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.012;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.4982;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=6;MQRankSum=2.932;QD=26.56;ReadPosRankSum=0.460;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:9,58:67:99:1808,122,0
+chr1	42196	.	C	T	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DP=73;Dels=0.00;FS=15.517;HaplotypeScore=23.7489;MLEAC=1;MLEAF=0.500;MQ=35.03;MQ0=7;MQRankSum=3.313;QD=10.94;ReadPosRankSum=0.091;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,28:73:99:827,0,820
+chr1	42202	.	T	C	1564.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.114;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=23.7489;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=6;MQRankSum=3.687;QD=24.84;ReadPosRankSum=-0.517;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:8,55:63:99:1593,107,0
+chr1	42204	.	C	T	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;DP=62;Dels=0.00;FS=14.833;HaplotypeScore=23.7489;MLEAC=1;MLEAF=0.500;MQ=32.93;MQ0=6;MQRankSum=3.649;QD=10.40;ReadPosRankSum=1.585;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,23:62:99:673,0,666
+chr1	42208	.	C	T	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DP=62;Dels=0.00;FS=14.833;HaplotypeScore=19.1747;MLEAC=1;MLEAF=0.500;MQ=32.93;MQ0=6;MQRankSum=3.599;QD=10.38;ReadPosRankSum=2.290;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,23:62:99:672,0,666
+chr1	42212	.	T	A	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;DP=60;Dels=0.00;FS=12.104;HaplotypeScore=19.4395;MLEAC=1;MLEAF=0.500;MQ=33.30;MQ0=6;MQRankSum=3.512;QD=10.15;ReadPosRankSum=2.280;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:38,22:60:99:637,0,656
+chr1	42218	.	A	G	1530.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.638;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.9344;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=6;MQRankSum=-0.881;QD=24.30;ReadPosRankSum=-1.732;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:1,62:63:93:1559,93,0
+chr1	42221	.	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;DP=65;Dels=0.00;FS=5.554;HaplotypeScore=8.9344;MLEAC=1;MLEAF=0.500;MQ=33.39;MQ0=6;MQRankSum=-1.189;QD=9.63;ReadPosRankSum=0.529;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:35,30:65:99:654,0,793
+chr1	42234	.	A	G	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=52;Dels=0.00;FS=7.954;HaplotypeScore=4.3119;MLEAC=1;MLEAF=0.500;MQ=36.56;MQ0=1;MQRankSum=-1.940;QD=11.46;ReadPosRankSum=0.634;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,24:52:99:624,0,788
+chr1	42260	.	T	C	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;DP=42;Dels=0.00;FS=4.638;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.16;MQ0=0;MQRankSum=-1.412;QD=8.95;ReadPosRankSum=0.401;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,16:42:99:404,0,716
+chr1	42263	.	G	A	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DP=37;Dels=0.00;FS=4.803;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=35.87;MQ0=0;MQRankSum=0.904;QD=14.56;ReadPosRankSum=0.843;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:16,21:37:99:567,0,421
+chr1	42280	.	G	A	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=36.50;MQ0=2;MQRankSum=0.805;QD=9.84;ReadPosRankSum=2.659;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:19,20:39:99:412,0,542
+chr1	42294	.	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=36.41;MQ0=2;MQRankSum=-0.883;QD=11.65;ReadPosRankSum=-0.558;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:19,16:35:99:436,0,494
+chr1	42305	.	C	T	1338.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=2;QD=33.47;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1367,111,0
+chr1	42316	.	T	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.47;MQ0=2;MQRankSum=-1.556;QD=10.46;ReadPosRankSum=-0.385;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:23,18:41:99:457,0,721
+chr1	42344	.	C	T	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=1;MLEAF=0.500;MQ=39.55;MQ0=2;MQRankSum=1.059;QD=16.22;ReadPosRankSum=1.851;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:23,26:49:99:823,0,592
+chr1	42360	.	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=1;QD=34.68;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1762,141,0
+chr1	42373	.	G	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.78;MQ0=0;MQRankSum=-1.866;QD=13.38;ReadPosRankSum=-0.181;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:657,0,768
+chr1	42400	.	A	C	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7967;MLEAC=1;MLEAF=0.500;MQ=44.88;MQ0=0;MQRankSum=-2.723;QD=12.16;ReadPosRankSum=1.372;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:27,21:48:99:612,0,919
+chr1	42416	.	C	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.7990;MLEAC=1;MLEAF=0.500;MQ=44.11;MQ0=0;MQRankSum=2.735;QD=16.06;ReadPosRankSum=-0.059;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,22:44:99:735,0,601
+chr1	42478	.	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.32;MQ0=1;MQRankSum=-2.431;QD=5.99;ReadPosRankSum=1.216;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:11,10:21:99:154,0,359
+chr1	42479	.	A	G	606.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=1;QD=27.58;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,22:22:54:635,54,0
+chr1	42486	.	A	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.44;MQ0=2;MQRankSum=-2.500;QD=6.25;ReadPosRankSum=0.599;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:11,12:23:99:172,0,350
+chr1	42503	.	T	A	579.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=2;QD=25.21;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:51:608,51,0
+chr1	42535	.	G	A	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.4516;MLEAC=1;MLEAF=0.500;MQ=39.57;MQ0=2;MQRankSum=-1.226;QD=12.17;ReadPosRankSum=-0.520;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:14,18:33:99:430,0,463
+chr1	42539	.	G	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.4516;MLEAC=1;MLEAF=0.500;MQ=39.57;MQ0=2;MQRankSum=-1.381;QD=13.42;ReadPosRankSum=-0.460;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:13,19:33:99:471,0,422
+chr1	42553	.	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=39.64;MQ0=2;MQRankSum=0.155;QD=15.72;ReadPosRankSum=-1.432;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:18,18:36:99:594,0,398
+chr1	42568	.	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=1;QD=33.33;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:87:1128,87,0
+chr1	42617	.	A	T	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.50;MQ0=1;MQRankSum=0.049;QD=7.30;ReadPosRankSum=-1.181;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:20,9:29:99:240,0,633
+chr1	42618	.	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.87;MQ0=1;MQRankSum=-0.029;QD=7.03;ReadPosRankSum=-1.252;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:18,8:26:99:211,0,532
+chr1	42641	.	A	G	782.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.7330;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=2;MQRankSum=1.595;QD=28.99;ReadPosRankSum=1.317;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:2,25:27:63:811,63,0
+chr1	42646	.	G	A	734.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.828;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.7330;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=1;MQRankSum=1.306;QD=29.39;ReadPosRankSum=1.097;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:2,23:25:60:763,60,0
+chr1	42650	.	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=22;Dels=0.00;FS=1.719;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=37.75;MQ0=1;MQRankSum=-2.354;QD=6.58;ReadPosRankSum=1.412;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:13,9:22:99:173,0,443
+chr1	42661	.	T	C	766.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.02;MQ0=1;QD=31.95;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:63:795,63,0
+chr1	42680	.	G	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;DP=23;Dels=0.00;FS=1.837;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.36;MQ0=1;MQRankSum=-0.922;QD=17.95;ReadPosRankSum=-0.332;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:6,17:23:99:441,0,171
+chr1	42698	.	A	G	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;DP=34;Dels=0.00;FS=3.589;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=48.79;MQ0=1;MQRankSum=-0.707;QD=22.93;ReadPosRankSum=1.071;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:9,25:34:99:808,0,202
+chr1	42700	.	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;DP=35;Dels=0.00;FS=3.712;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=49.15;MQ0=1;MQRankSum=0.156;QD=5.31;ReadPosRankSum=-1.054;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,9:35:99:214,0,848
+chr1	42716	.	C	A	1242.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=25.32;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1271,96,0
+chr1	42723	.	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;DP=39;Dels=0.00;FS=3.206;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=52.95;MQ0=0;MQRankSum=1.358;QD=5.20;ReadPosRankSum=-2.013;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,11:39:99:231,0,953
+chr1	42738	.	G	A	1423.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=27.94;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1452,108,0
+chr1	42747	.	C	T	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=38;Dels=0.00;FS=1.475;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=55.27;MQ0=0;MQRankSum=-1.468;QD=21.23;ReadPosRankSum=1.165;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:14,24:38:99:835,0,401
+chr1	42749	.	C	T	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;DP=38;Dels=0.00;FS=1.475;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=55.27;MQ0=0;MQRankSum=2.557;QD=9.02;ReadPosRankSum=-1.347;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,14:38:99:371,0,833
+chr1	42815	.	T	C	1223.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=1;QD=33.07;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,37:37:96:1252,96,0
+chr1	42840	.	A	G	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;DP=40;Dels=0.00;FS=1.243;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.73;MQ0=1;MQRankSum=0.745;QD=14.59;ReadPosRankSum=1.278;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:20,20:40:99:612,0,601
+chr1	42845	.	A	G	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=39;Dels=0.00;FS=1.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=1;MQRankSum=0.482;QD=14.76;ReadPosRankSum=1.710;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:19,20:39:99:604,0,571
+chr1	42846	.	G	A	1308.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=1;QD=33.56;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1337,102,0
+chr1	42848	.	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DP=41;Dels=0.00;FS=1.189;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.81;MQ0=1;MQRankSum=0.720;QD=14.29;ReadPosRankSum=1.237;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:19,22:41:99:614,0,573
+chr1	42865	.	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;DP=50;Dels=0.00;FS=4.589;HaplotypeScore=1.9988;MLEAC=1;MLEAF=0.500;MQ=57.49;MQ0=1;MQRankSum=-0.645;QD=6.80;ReadPosRankSum=1.619;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:36,14:50:99:368,0,1156
+chr1	42867	.	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DP=50;Dels=0.00;FS=2.949;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=57.49;MQ0=1;MQRankSum=-0.500;QD=5.86;ReadPosRankSum=1.965;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:37,13:50:99:321,0,1202
+chr1	42868	.	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=1;QD=31.13;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1752,135,0
+chr1	42872	.	C	T	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DP=49;Dels=0.00;FS=2.969;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=1;MQRankSum=0.821;QD=23.85;ReadPosRankSum=-1.131;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:13,36:49:99:1197,0,340
+chr1	42885	.	T	C	1721.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;DP=50;Dels=0.00;FS=3.297;HaplotypeScore=2.9991;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=2;MQRankSum=-0.479;QD=34.44;ReadPosRankSum=1.511;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:1,48:50:99:1750,100,0
+chr1	42886	.	C	T	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.810;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.9991;MLEAC=1;MLEAF=0.500;MQ=57.48;MQ0=2;MQRankSum=1.039;QD=21.46;ReadPosRankSum=1.761;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:18,32:50:99:1101,0,484
+chr1	42890	.	G	T	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510;DP=56;Dels=0.00;FS=1.156;HaplotypeScore=2.9991;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=2;MQRankSum=-0.672;QD=7.39;ReadPosRankSum=-1.203;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:38,18:56:99:442,0,1293
+chr1	42926	.	C	T	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;DP=58;Dels=0.00;FS=7.798;HaplotypeScore=2.7439;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=1;MQRankSum=-0.975;QD=20.50;ReadPosRankSum=0.418;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:23,35:58:99:1217,0,729
+chr1	42931	.	T	C	2121.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.7439;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=1;QD=32.67;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2150,163,0
+chr1	42980	.	T	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;DP=47;Dels=0.00;FS=6.054;HaplotypeScore=2.5225;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=-0.991;QD=18.08;ReadPosRankSum=1.098;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,25:47:99:878,0,734
+chr1	43004	.	A	G	1350.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=34.40;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1379,105,0
+chr1	43009	.	G	A	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.02;MQ0=0;MQRankSum=2.090;QD=14.47;ReadPosRankSum=0.512;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:20,18:38:99:578,0,652
+chr1	43016	.	A	G	1291.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=26.98;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1320,99,0
+chr1	43030	.	G	A	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DP=40;Dels=0.00;FS=1.252;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=0;MQRankSum=-2.465;QD=14.89;ReadPosRankSum=-0.325;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,19:40:99:624,0,708
+chr1	43039	.	G	A	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DP=38;Dels=0.00;FS=2.920;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.44;MQ0=0;MQRankSum=-1.493;QD=12.99;ReadPosRankSum=0.606;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,16:38:99:522,0,755
+chr1	43040	.	G	A	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DP=40;Dels=0.00;FS=4.756;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.41;MQ0=0;MQRankSum=-1.155;QD=13.87;ReadPosRankSum=-0.177;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,18:40:99:583,0,758
+chr1	43050	.	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=26.86;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1836,141,0
+chr1	43061	.	T	A	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;DP=49;Dels=0.00;FS=4.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.00;MQ0=0;MQRankSum=1.606;QD=17.65;ReadPosRankSum=1.020;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,28:49:99:893,0,625
+chr1	43067	.	C	T	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DP=51;Dels=0.00;FS=4.058;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-0.462;QD=16.78;ReadPosRankSum=2.101;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:25,26:51:99:884,0,760
+chr1	43068	.	G	T	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DP=53;Dels=0.00;FS=5.783;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=52.75;MQ0=0;MQRankSum=2.286;QD=16.58;ReadPosRankSum=2.073;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,27:53:99:907,0,821
+chr1	43083	.	G	C	2208.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=33.11;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2237,169,0
+chr1	43097	.	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=28.14;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,56:57:99:2220,166,0
+chr1	43150	.	T	A	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;DP=54;Dels=0.00;FS=2.461;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.65;MQ0=0;MQRankSum=1.401;QD=18.50;ReadPosRankSum=-1.279;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,30:54:99:1027,0,700
+chr1	43153	.	G	A	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=58;Dels=0.00;FS=3.788;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=45.16;MQ0=0;MQRankSum=1.366;QD=19.08;ReadPosRankSum=-1.696;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:25,33:58:99:1135,0,730
+chr1	43183	.	T	C	1947.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=33.86;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1976,147,0
+chr1	43187	.	G	A	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.9656;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=0;MQRankSum=-0.333;QD=14.13;ReadPosRankSum=0.219;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:29,22:51:99:749,0,974
+chr1	43195	.	A	G	2077.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.472;DP=56;Dels=0.00;FS=5.362;HaplotypeScore=4.9656;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.283;QD=34.04;ReadPosRankSum=1.669;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:1,54:56:99:2106,123,0
+chr1	43197	.	G	A	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DP=58;Dels=0.00;FS=1.101;HaplotypeScore=4.9656;MLEAC=1;MLEAF=0.500;MQ=50.81;MQ0=0;MQRankSum=0.868;QD=18.32;ReadPosRankSum=0.524;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,32:58:99:1091,0,879
+chr1	43231	.	C	A	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=56.98;MQ0=0;MQRankSum=-0.040;QD=12.06;ReadPosRankSum=0.473;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:36,22:58:99:728,0,1277
+chr1	43246	.	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;DP=72;Dels=0.00;FS=7.335;HaplotypeScore=2.4678;MLEAC=1;MLEAF=0.500;MQ=53.67;MQ0=0;MQRankSum=-3.808;QD=0.61;ReadPosRankSum=-2.768;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:64,8:72:72:72,0,2204
+chr1	43265	.	A	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;DP=75;Dels=0.00;FS=7.472;HaplotypeScore=3.7546;MLEAC=1;MLEAF=0.500;MQ=52.35;MQ0=0;MQRankSum=-3.233;QD=0.44;ReadPosRankSum=-2.359;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:68,7:75:61:61,0,2183
+chr1	43276	.	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.432;DP=69;Dels=0.00;FS=3.775;HaplotypeScore=9.7497;MLEAC=1;MLEAF=0.500;MQ=52.79;MQ0=0;MQRankSum=-3.715;QD=1.13;ReadPosRankSum=1.470;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:60,9:69:99:106,0,2099
+chr1	43278	.	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;DP=70;Dels=0.00;FS=18.468;HaplotypeScore=9.7497;MLEAC=1;MLEAF=0.500;MQ=52.72;MQ0=0;MQRankSum=-6.081;QD=5.05;ReadPosRankSum=2.009;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:52,18:70:99:382,0,1868
+chr1	43282	.	A	G	2155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;DP=72;Dels=0.00;FS=5.810;HaplotypeScore=18.7776;MLEAC=1;MLEAF=0.500;MQ=51.85;MQ0=0;MQRankSum=3.314;QD=29.94;ReadPosRankSum=-2.157;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:10,62:72:99:2184,0,134
+chr1	43285	.	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;DP=73;Dels=0.00;FS=5.951;HaplotypeScore=50.5662;MLEAC=1;MLEAF=0.500;MQ=51.51;MQ0=0;MQRankSum=-3.088;QD=1.42;ReadPosRankSum=2.735;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,10:73:99:132,0,2235
+chr1	43291	.	C	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DP=74;Dels=0.00;FS=19.101;HaplotypeScore=33.7389;MLEAC=1;MLEAF=0.500;MQ=51.06;MQ0=1;MQRankSum=-3.986;QD=2.73;ReadPosRankSum=0.439;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,11:74:99:230,0,2102
+chr1	43293	.	A	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.021;DP=71;Dels=0.00;FS=10.885;HaplotypeScore=23.8257;MLEAC=1;MLEAF=0.500;MQ=50.40;MQ0=1;MQRankSum=-3.987;QD=2.73;ReadPosRankSum=2.507;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:57,14:71:99:222,0,1937
+chr1	43298	.	C	T	2572.77	.	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=13.9125;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=1;QD=27.53;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2601,199,0
+chr1	43315	.	A	C	2446.77	.	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=1;QD=24.56;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2475,196,0
+chr1	43326	.	A	T	2504.77	.	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=25.9658;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=1;QD=28.27;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2533,196,0
+chr1	43328	.	C	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;DP=70;Dels=0.00;FS=18.175;HaplotypeScore=28.9637;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=1;MQRankSum=-1.433;QD=4.03;ReadPosRankSum=-2.248;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:54,16:70:99:310,0,1933
+chr1	43332	.	G	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;DP=68;Dels=0.00;FS=31.387;HaplotypeScore=27.9641;MLEAC=1;MLEAF=0.500;MQ=48.56;MQ0=2;MQRankSum=3.076;QD=5.57;ReadPosRankSum=0.704;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:53,15:68:99:407,0,1696
+chr1	43333	.	C	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;DP=63;Dels=0.00;FS=24.273;HaplotypeScore=25.9652;MLEAC=1;MLEAF=0.500;MQ=48.61;MQ0=2;MQRankSum=-3.220;QD=4.08;ReadPosRankSum=0.717;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,12:63:99:285,0,1646
+chr1	43371	.	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DP=73;Dels=0.00;FS=22.148;HaplotypeScore=6.9922;MLEAC=1;MLEAF=0.500;MQ=51.66;MQ0=2;MQRankSum=2.809;QD=6.64;ReadPosRankSum=-0.324;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,18:73:99:513,0,1764
+chr1	43372	.	C	T	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DP=74;Dels=0.00;FS=22.148;HaplotypeScore=6.9922;MLEAC=1;MLEAF=0.500;MQ=51.31;MQ0=3;MQRankSum=2.584;QD=6.60;ReadPosRankSum=-0.403;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:56,18:74:99:517,0,1762
+chr1	43392	.	C	T	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;DP=82;Dels=0.00;FS=11.173;HaplotypeScore=1.9978;MLEAC=1;MLEAF=0.500;MQ=51.96;MQ0=2;MQRankSum=3.354;QD=9.66;ReadPosRankSum=0.047;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:53,27:82:99:820,0,1545
+chr1	43419	.	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.314;DP=85;Dels=0.00;FS=4.704;HaplotypeScore=41.2098;MLEAC=1;MLEAF=0.500;MQ=52.49;MQ0=2;MQRankSum=-3.922;QD=0.80;ReadPosRankSum=-1.307;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,15:85:96:96,0,2450
+chr1	43420	.	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;DP=85;Dels=0.00;FS=8.730;HaplotypeScore=41.2098;MLEAC=1;MLEAF=0.500;MQ=52.49;MQ0=2;MQRankSum=-3.994;QD=1.48;ReadPosRankSum=-1.438;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:68,17:85:99:154,0,2361
+chr1	43424	.	C	T	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;DP=86;Dels=0.00;FS=5.028;HaplotypeScore=83.0946;MLEAC=1;MLEAF=0.500;MQ=52.08;MQ0=2;MQRankSum=2.883;QD=9.25;ReadPosRankSum=2.423;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:59,27:86:99:824,0,1702
+chr1	43442	.	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DP=81;Dels=0.00;FS=4.587;HaplotypeScore=5.9982;MLEAC=1;MLEAF=0.500;MQ=51.64;MQ0=1;MQRankSum=-5.183;QD=2.57;ReadPosRankSum=1.497;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,18:81:99:236,0,2162
+chr1	43464	.	T	C	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;DP=83;Dels=0.00;FS=6.657;HaplotypeScore=7.8783;MLEAC=1;MLEAF=0.500;MQ=51.04;MQ0=2;MQRankSum=-7.377;QD=12.11;ReadPosRankSum=-0.440;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:43,40:83:99:1033,0,1434
+chr1	43478	.	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;DP=78;Dels=0.00;FS=2.728;HaplotypeScore=27.3493;MLEAC=1;MLEAF=0.500;MQ=50.85;MQ0=1;MQRankSum=-1.601;QD=4.14;ReadPosRankSum=-1.498;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,15:78:99:351,0,2012
+chr1	43479	.	T	C	17.84	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;DP=78;Dels=0.00;FS=7.130;HaplotypeScore=27.3493;MLEAC=1;MLEAF=0.500;MQ=50.62;MQ0=1;MQRankSum=-1.781;QD=0.23;ReadPosRankSum=0.470;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,8:78:46:46,0,2305
+chr1	43500	.	C	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DP=75;Dels=0.00;FS=9.744;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.12;MQ0=1;MQRankSum=3.454;QD=2.78;ReadPosRankSum=-0.550;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,12:75:99:237,0,2108
+chr1	43510	.	A	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;DP=78;Dels=0.00;FS=13.593;HaplotypeScore=39.7676;MLEAC=1;MLEAF=0.500;MQ=48.31;MQ0=1;MQRankSum=3.326;QD=1.74;ReadPosRankSum=-1.053;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:68,10:78:99:164,0,2251
+chr1	43512	.	T	C	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=79;Dels=0.00;FS=5.766;HaplotypeScore=29.7717;MLEAC=1;MLEAF=0.500;MQ=48.16;MQ0=1;MQRankSum=-2.674;QD=5.09;ReadPosRankSum=-1.477;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:61,18:79:99:430,0,1984
+chr1	43517	.	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;DP=74;Dels=0.00;FS=7.633;HaplotypeScore=48.4896;MLEAC=1;MLEAF=0.500;MQ=47.06;MQ0=1;MQRankSum=-2.543;QD=0.98;ReadPosRankSum=0.457;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,11:74:99:101,0,2153
+chr1	43520	.	C	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;DP=74;Dels=0.00;FS=3.451;HaplotypeScore=48.4896;MLEAC=1;MLEAF=0.500;MQ=46.48;MQ0=1;MQRankSum=-2.123;QD=0.54;ReadPosRankSum=0.579;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:64,10:74:68:68,0,2205
+chr1	43523	.	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DP=77;Dels=0.00;FS=9.238;HaplotypeScore=43.3257;MLEAC=1;MLEAF=0.500;MQ=45.89;MQ0=1;MQRankSum=2.335;QD=0.44;ReadPosRankSum=-0.952;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,7:77:62:62,0,2240
+chr1	43525	.	A	G	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;DP=75;Dels=0.00;FS=2.429;HaplotypeScore=41.3363;MLEAC=1;MLEAF=0.500;MQ=46.07;MQ0=1;MQRankSum=2.219;QD=4.41;ReadPosRankSum=0.363;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:60,15:75:99:359,0,1931
+chr1	43532	.	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;DP=73;Dels=0.00;FS=11.099;HaplotypeScore=23.1272;MLEAC=1;MLEAF=0.500;MQ=45.27;MQ0=2;MQRankSum=1.051;QD=8.75;ReadPosRankSum=-0.227;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:49,24:73:99:667,0,1489
+chr1	43535	.	C	G	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;DP=71;Dels=0.00;FS=13.340;HaplotypeScore=30.0213;MLEAC=1;MLEAF=0.500;MQ=44.73;MQ0=2;MQRankSum=1.228;QD=8.70;ReadPosRankSum=-0.541;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:47,24:71:99:646,0,1479
+chr1	43544	.	G	A	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DP=67;Dels=0.00;FS=8.590;HaplotypeScore=21.3628;MLEAC=1;MLEAF=0.500;MQ=43.73;MQ0=2;MQRankSum=-0.099;QD=12.70;ReadPosRankSum=1.165;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:37,30:67:99:879,0,1032
+chr1	43548	.	T	C	2142.77	.	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=18.0294;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=1;QD=34.56;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2171,171,0
+chr1	43554	.	A	G	1643.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=19.3162;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=1;QD=32.88;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1672,135,0
+chr1	43556	.	A	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;DP=50;Dels=0.00;FS=20.048;HaplotypeScore=10.4239;MLEAC=1;MLEAF=0.500;MQ=40.15;MQ0=1;MQRankSum=1.405;QD=6.36;ReadPosRankSum=-0.232;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:35,15:50:99:346,0,981
+chr1	43562	.	A	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;DP=50;Dels=0.00;FS=14.927;HaplotypeScore=31.3082;MLEAC=1;MLEAF=0.500;MQ=40.43;MQ0=1;MQRankSum=1.421;QD=7.74;ReadPosRankSum=-0.683;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:34,16:50:99:415,0,1027
+chr1	43569	.	T	C	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;DP=43;Dels=0.00;FS=13.268;HaplotypeScore=30.7711;MLEAC=1;MLEAF=0.500;MQ=39.33;MQ0=1;MQRankSum=-1.864;QD=26.90;ReadPosRankSum=1.607;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:4,39:43:35:1185,0,35
+chr1	43571	.	A	G	1091.86	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=32.6687;MLEAC=1;MLEAF=0.500;MQ=38.46;MQ0=1;QD=25.39;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,36:43:99:1234,99,0
+chr1	43572	.	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;DP=45;Dels=0.00;FS=3.225;HaplotypeScore=32.6687;MLEAC=1;MLEAF=0.500;MQ=37.69;MQ0=2;MQRankSum=-0.039;QD=6.37;ReadPosRankSum=0.842;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:31,14:45:99:315,0,750
+chr1	43594	.	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;DP=44;Dels=0.00;FS=5.674;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=35.55;MQ0=2;MQRankSum=0.307;QD=3.77;ReadPosRankSum=0.092;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:34,10:44:99:194,0,793
+chr1	43610	.	C	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;DP=33;Dels=0.00;FS=6.419;HaplotypeScore=4.5214;MLEAC=1;MLEAF=0.500;MQ=33.96;MQ0=2;MQRankSum=-0.609;QD=3.30;ReadPosRankSum=-0.655;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:25,8:33:99:137,0,510
+chr1	43619	.	T	C	412.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=5.3349;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=2;QD=17.95;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:36:441,36,0
+chr1	43627	.	T	G	140.9	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=1;QD=9.39;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:15:169,15,0
+chr1	43635	.	C	T	17.84	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;DP=28;Dels=0.00;FS=10.098;HaplotypeScore=6.9461;MLEAC=1;MLEAF=0.500;MQ=36.02;MQ0=1;MQRankSum=-0.717;QD=0.64;ReadPosRankSum=-1.945;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,4:28:46:46,0,498
+chr1	43639	.	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=28;Dels=0.00;FS=3.565;HaplotypeScore=6.9461;MLEAC=1;MLEAF=0.500;MQ=36.02;MQ0=1;MQRankSum=-1.029;QD=4.46;ReadPosRankSum=0.326;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:18,10:28:99:153,0,405
+chr1	43643	.	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=13.8923;MLEAC=1;MLEAF=0.500;MQ=36.79;MQ0=1;MQRankSum=0.952;QD=1.16;ReadPosRankSum=-1.543;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,5:29:62:62,0,530
+chr1	43651	.	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DP=33;Dels=0.00;FS=1.393;HaplotypeScore=3.9569;MLEAC=1;MLEAF=0.500;MQ=39.46;MQ0=1;MQRankSum=1.499;QD=7.78;ReadPosRankSum=1.421;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,12:33:99:285,0,426
+chr1	43662	.	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=6.2383;MLEAC=1;MLEAF=0.500;MQ=44.29;MQ0=0;MQRankSum=0.474;QD=3.35;ReadPosRankSum=-0.227;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:31,6:37:99:152,0,768
+chr1	43664	.	A	G	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DP=36;Dels=0.00;FS=5.877;HaplotypeScore=6.2383;MLEAC=1;MLEAF=0.500;MQ=45.71;MQ0=0;MQRankSum=-2.505;QD=4.72;ReadPosRankSum=-0.124;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:24,11:36:99:198,0,750
+chr1	43668	.	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;DP=39;Dels=0.00;FS=8.049;HaplotypeScore=10.2065;MLEAC=1;MLEAF=0.500;MQ=45.43;MQ0=0;MQRankSum=-2.825;QD=7.71;ReadPosRankSum=-0.922;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:25,14:39:99:329,0,752
+chr1	43678	.	T	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DP=52;Dels=0.00;FS=11.972;HaplotypeScore=19.6024;MLEAC=1;MLEAF=0.500;MQ=44.28;MQ0=0;MQRankSum=-1.814;QD=3.86;ReadPosRankSum=1.661;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:40,12:52:99:229,0,1169
+chr1	43686	.	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=13.0300;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=29.75;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1694,138,0
+chr1	43688	.	C	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=30.3912;MLEAC=1;MLEAF=0.500;MQ=43.92;MQ0=0;MQRankSum=4.253;QD=8.54;ReadPosRankSum=1.047;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:38,17:55:99:498,0,1002
+chr1	43698	.	T	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=67;Dels=0.00;FS=8.840;HaplotypeScore=47.7369;MLEAC=1;MLEAF=0.500;MQ=45.08;MQ0=0;MQRankSum=-4.239;QD=8.07;ReadPosRankSum=-0.495;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,26:67:99:569,0,1255
+chr1	43705	.	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;DP=69;Dels=0.00;FS=3.045;HaplotypeScore=32.6622;MLEAC=1;MLEAF=0.500;MQ=45.16;MQ0=0;MQRankSum=-0.571;QD=2.33;ReadPosRankSum=0.145;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:59,10:69:99:189,0,1720
+chr1	43713	.	A	C	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;DP=77;Dels=0.00;FS=11.201;HaplotypeScore=42.6440;MLEAC=1;MLEAF=0.500;MQ=45.67;MQ0=0;MQRankSum=-5.163;QD=8.23;ReadPosRankSum=0.667;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,32:77:99:662,0,1440
+chr1	43719	.	A	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;DP=81;Dels=0.00;FS=4.781;HaplotypeScore=21.7031;MLEAC=1;MLEAF=0.500;MQ=45.82;MQ0=0;MQRankSum=-0.691;QD=1.52;ReadPosRankSum=-0.778;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:70,10:81:99:151,0,2102
+chr1	43742	.	A	T	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;DP=82;Dels=0.00;FS=35.671;HaplotypeScore=38.7529;MLEAC=1;MLEAF=0.500;MQ=46.28;MQ0=0;MQRankSum=1.619;QD=4.07;ReadPosRankSum=-0.708;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:67,15:82:99:362,0,1988
+chr1	43754	.	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DP=81;Dels=0.00;FS=11.585;HaplotypeScore=3.8103;MLEAC=1;MLEAF=0.500;MQ=45.89;MQ0=0;MQRankSum=-4.306;QD=4.89;ReadPosRankSum=0.292;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:59,22:81:99:424,0,1874
+chr1	43755	.	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DP=81;Dels=0.00;FS=11.585;HaplotypeScore=3.8103;MLEAC=1;MLEAF=0.500;MQ=45.89;MQ0=0;MQRankSum=-4.189;QD=4.47;ReadPosRankSum=0.143;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:59,22:81:99:390,0,1864
+chr1	43771	.	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=17.4268;MLEAC=1;MLEAF=0.500;MQ=48.68;MQ0=0;MQRankSum=-0.578;QD=0.63;ReadPosRankSum=-0.506;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:75,9:84:81:81,0,2479
+chr1	43781	.	A	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=27.2915;MLEAC=1;MLEAF=0.500;MQ=50.47;MQ0=0;MQRankSum=-1.448;QD=1.76;ReadPosRankSum=-0.883;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,12:89:99:185,0,2613
+chr1	43786	.	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;DP=84;Dels=0.00;FS=1.288;HaplotypeScore=17.3780;MLEAC=1;MLEAF=0.500;MQ=51.33;MQ0=0;MQRankSum=-1.617;QD=1.74;ReadPosRankSum=-0.901;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:72,12:84:99:174,0,2552
+chr1	43806	.	T	C	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=35.5387;MLEAC=1;MLEAF=0.500;MQ=51.97;MQ0=0;MQRankSum=-6.251;QD=15.98;ReadPosRankSum=0.139;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,41:82:99:1339,0,1390
+chr1	43810	.	C	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;DP=79;Dels=0.00;FS=10.312;HaplotypeScore=35.5390;MLEAC=1;MLEAF=0.500;MQ=52.20;MQ0=0;MQRankSum=-2.175;QD=1.48;ReadPosRankSum=1.218;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:68,10:79:99:145,0,2427
+chr1	43816	.	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;DP=76;Dels=0.00;FS=1.622;HaplotypeScore=86.3319;MLEAC=1;MLEAF=0.500;MQ=52.70;MQ0=0;MQRankSum=-2.822;QD=2.44;ReadPosRankSum=1.394;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:55,11:76:99:214,0,1931
+chr1	43818	.	A	G	2850.77	.	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=49.3811;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=33.21;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,74:75:99:2879,223,0
+chr1	43821	.	G	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;DP=80;Dels=0.00;FS=3.003;HaplotypeScore=41.4503;MLEAC=1;MLEAF=0.500;MQ=52.13;MQ0=2;MQRankSum=-3.694;QD=4.70;ReadPosRankSum=0.476;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:64,16:80:99:404,0,2083
+chr1	43823	.	G	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=47.4468;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=2;MQRankSum=3.459;QD=8.60;ReadPosRankSum=0.112;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:57,24:81:99:725,0,1844
+chr1	43834	.	A	C	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DP=87;Dels=0.00;FS=5.047;HaplotypeScore=27.3319;MLEAC=1;MLEAF=0.500;MQ=51.57;MQ0=2;MQRankSum=-6.863;QD=11.49;ReadPosRankSum=1.136;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:47,40:87:99:1028,0,1538
+chr1	43840	.	C	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DP=85;Dels=0.00;FS=1.532;HaplotypeScore=28.5959;MLEAC=1;MLEAF=0.500;MQ=51.00;MQ0=2;MQRankSum=-0.945;QD=1.09;ReadPosRankSum=-1.311;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:74,11:85:99:121,0,2480
+chr1	43841	.	G	A	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DP=88;Dels=0.00;FS=8.668;HaplotypeScore=28.5959;MLEAC=1;MLEAF=0.500;MQ=51.26;MQ0=2;MQRankSum=-6.447;QD=6.87;ReadPosRankSum=1.228;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:58,30:88:99:633,0,2003
+chr1	43851	.	A	G	3242.77	.	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=3;QD=29.59;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3271,253,0
+chr1	43863	.	A	G	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=54.7219;MLEAC=1;MLEAF=0.500;MQ=49.86;MQ0=3;MQRankSum=-4.540;QD=0.20;ReadPosRankSum=0.738;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:83,14:97:48:48,0,2773
+chr1	43864	.	G	A	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DP=94;Dels=0.00;FS=1.845;HaplotypeScore=54.7219;MLEAC=1;MLEAF=0.500;MQ=49.56;MQ0=3;MQRankSum=3.253;QD=11.17;ReadPosRankSum=-0.144;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:60,34:94:99:1078,0,1669
+chr1	43866	.	G	C	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;DP=89;Dels=0.00;FS=2.991;HaplotypeScore=55.7192;MLEAC=1;MLEAF=0.500;MQ=48.76;MQ0=3;MQRankSum=6.796;QD=18.00;ReadPosRankSum=1.587;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:40,49:89:99:1630,0,963
+chr1	43877	.	T	G	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;DP=82;Dels=0.00;FS=4.511;HaplotypeScore=22.6567;MLEAC=1;MLEAF=0.500;MQ=48.08;MQ0=3;MQRankSum=-6.816;QD=8.86;ReadPosRankSum=-0.734;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:48,34:82:99:755,0,1613
+chr1	43880	.	G	A	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;DP=81;Dels=0.00;FS=3.784;HaplotypeScore=34.1328;MLEAC=1;MLEAF=0.500;MQ=47.59;MQ0=3;MQRankSum=4.821;QD=5.75;ReadPosRankSum=0.397;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,19:81:99:494,0,1845
+chr1	43886	.	A	G	2779.77	.	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=36.7766;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=3;QD=33.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2808,223,0
+chr1	43895	.	A	G	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;DP=84;Dels=0.00;FS=3.557;HaplotypeScore=5.7833;MLEAC=1;MLEAF=0.500;MQ=47.29;MQ0=3;MQRankSum=3.874;QD=6.95;ReadPosRankSum=-0.792;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,22:84:99:612,0,1874
+chr1	43919	.	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DP=90;Dels=0.00;FS=10.596;HaplotypeScore=31.8093;MLEAC=1;MLEAF=0.500;MQ=48.00;MQ0=3;MQRankSum=-3.047;QD=1.38;ReadPosRankSum=2.387;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:77,12:90:99:152,0,2472
+chr1	43921	.	C	T	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;DP=89;Dels=0.00;FS=11.456;HaplotypeScore=31.8093;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=3;MQRankSum=-0.291;QD=12.58;ReadPosRankSum=1.796;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,38:89:99:1148,0,1412
+chr1	43929	.	G	C	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DP=96;Dels=0.00;FS=0.861;HaplotypeScore=31.8093;MLEAC=1;MLEAF=0.500;MQ=47.78;MQ0=4;MQRankSum=4.123;QD=8.49;ReadPosRankSum=0.847;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:64,31:96:99:843,0,1928
+chr1	43954	.	G	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;DP=98;Dels=0.00;FS=3.403;HaplotypeScore=31.4020;MLEAC=1;MLEAF=0.500;MQ=48.81;MQ0=3;MQRankSum=-1.940;QD=5.12;ReadPosRankSum=-1.332;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:73,25:98:99:530,0,2436
+chr1	43958	.	T	C	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;DP=98;Dels=0.00;FS=0.772;HaplotypeScore=41.3969;MLEAC=1;MLEAF=0.500;MQ=49.49;MQ0=3;MQRankSum=-3.408;QD=11.86;ReadPosRankSum=0.154;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:56,42:98:99:1191,0,1753
+chr1	43959	.	T	C	3463.77	.	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=41.4115;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=3;QD=29.91;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3492,268,0
+chr1	43966	.	G	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;DP=107;Dels=0.00;FS=4.094;HaplotypeScore=60.8308;MLEAC=1;MLEAF=0.500;MQ=49.53;MQ0=3;MQRankSum=-0.729;QD=2.14;ReadPosRankSum=0.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:93,14:107:99:257,0,2992
+chr1	43969	.	G	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;DP=107;Dels=0.00;FS=1.978;HaplotypeScore=35.1970;MLEAC=1;MLEAF=0.500;MQ=49.50;MQ0=3;MQRankSum=-2.173;QD=5.55;ReadPosRankSum=-0.469;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:80,27:107:99:622,0,2650
+chr1	43976	.	G	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DP=112;Dels=0.00;FS=3.944;HaplotypeScore=55.4395;MLEAC=1;MLEAF=0.500;MQ=49.60;MQ0=4;MQRankSum=-1.018;QD=2.50;ReadPosRankSum=-0.480;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:96,15:112:99:308,0,3072
+chr1	43984	.	G	A	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DP=118;Dels=0.00;FS=2.892;HaplotypeScore=75.9412;MLEAC=1;MLEAF=0.500;MQ=50.30;MQ0=4;MQRankSum=0.547;QD=6.90;ReadPosRankSum=-0.638;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:89,29:118:99:842,0,2830
+chr1	43988	.	A	C	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DP=116;Dels=0.00;FS=5.433;HaplotypeScore=43.4214;MLEAC=1;MLEAF=0.500;MQ=50.72;MQ0=4;MQRankSum=4.795;QD=7.25;ReadPosRankSum=-1.758;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:81,34:116:99:869,0,2451
+chr1	44002	.	A	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DP=116;Dels=0.00;FS=0.958;HaplotypeScore=39.4904;MLEAC=1;MLEAF=0.500;MQ=51.56;MQ0=3;MQRankSum=-2.313;QD=3.79;ReadPosRankSum=1.726;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:96,20:116:99:468,0,2935
+chr1	44007	.	T	A	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;DP=111;Dels=0.00;FS=6.411;HaplotypeScore=43.4892;MLEAC=1;MLEAF=0.500;MQ=51.69;MQ0=3;MQRankSum=-6.177;QD=12.94;ReadPosRankSum=0.970;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:60,51:111:99:1465,0,1937
+chr1	44026	.	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.135;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.8459;MLEAC=1;MLEAF=0.500;MQ=51.69;MQ0=1;MQRankSum=-3.383;QD=0.29;ReadPosRankSum=-0.605;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:98,12:110:60:60,0,3255
+chr1	44060	.	T	C	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;DP=84;Dels=0.00;FS=2.470;HaplotypeScore=22.4896;MLEAC=1;MLEAF=0.500;MQ=51.59;MQ0=1;MQRankSum=4.395;QD=5.53;ReadPosRankSum=0.493;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:64,20:84:99:493,0,2021
+chr1	44069	.	C	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;DP=73;Dels=0.00;FS=3.136;HaplotypeScore=49.4176;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=1;MQRankSum=-5.204;QD=3.39;ReadPosRankSum=-0.520;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:49,13:73:99:276,0,1726
+chr1	44072	.	T	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=71;Dels=0.00;FS=1.293;HaplotypeScore=23.4451;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=1;MQRankSum=-3.737;QD=3.56;ReadPosRankSum=-1.197;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:57,14:71:99:281,0,1830
+chr1	44082	.	C	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DP=69;Dels=0.00;FS=10.437;HaplotypeScore=20.4044;MLEAC=1;MLEAF=0.500;MQ=52.41;MQ0=0;MQRankSum=-3.783;QD=3.49;ReadPosRankSum=-1.205;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:56,13:69:99:269,0,1813
+chr1	44096	.	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=19.4892;MLEAC=1;MLEAF=0.500;MQ=51.69;MQ0=0;MQRankSum=4.352;QD=10.13;ReadPosRankSum=1.466;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:40,20:60:99:636,0,1132
+chr1	44099	.	T	G	1703.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=15.7767;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=29.84;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1732,132,0
+chr1	44100	.	A	T	1683.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=13.9885;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=31.14;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1712,129,0
+chr1	44102	.	A	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;DP=47;Dels=0.00;FS=10.637;HaplotypeScore=20.9826;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=0;MQRankSum=-3.780;QD=2.00;ReadPosRankSum=1.539;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:40,7:47:99:122,0,1452
+chr1	44103	.	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;DP=47;Dels=0.00;FS=10.637;HaplotypeScore=20.9826;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=0;MQRankSum=-3.780;QD=2.14;ReadPosRankSum=1.539;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:40,7:47:99:129,0,1433
+chr1	44111	.	T	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;DP=55;Dels=0.00;FS=2.927;HaplotypeScore=2.1550;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=0;MQRankSum=-4.824;QD=3.38;ReadPosRankSum=-0.961;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,13:55:99:214,0,1474
+chr1	44117	.	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DP=61;Dels=0.00;FS=5.158;HaplotypeScore=10.4916;MLEAC=1;MLEAF=0.500;MQ=52.01;MQ0=0;MQRankSum=-3.964;QD=2.88;ReadPosRankSum=0.699;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:49,12:61:99:204,0,1632
+chr1	44120	.	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;DP=63;Dels=0.00;FS=5.124;HaplotypeScore=10.4916;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=0;MQRankSum=-4.000;QD=2.69;ReadPosRankSum=1.094;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:51,12:63:99:198,0,1749
+chr1	44126	.	T	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;DP=63;Dels=0.00;FS=8.122;HaplotypeScore=17.4822;MLEAC=1;MLEAF=0.500;MQ=52.02;MQ0=0;MQRankSum=-4.789;QD=6.36;ReadPosRankSum=-1.205;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,21:63:99:429,0,1420
+chr1	44133	.	C	T	24.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;DP=64;Dels=0.00;FS=3.868;HaplotypeScore=13.3538;MLEAC=1;MLEAF=0.500;MQ=51.28;MQ0=0;MQRankSum=-2.947;QD=0.39;ReadPosRankSum=-2.323;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:57,7:64:53:53,0,1875
+chr1	44145	.	T	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.048;DP=72;Dels=0.00;FS=14.645;HaplotypeScore=3.9967;MLEAC=1;MLEAF=0.500;MQ=50.27;MQ0=0;MQRankSum=-4.480;QD=6.77;ReadPosRankSum=2.170;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,22:72:99:516,0,1706
+chr1	44157	.	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;DP=70;Dels=0.00;FS=5.275;HaplotypeScore=5.7502;MLEAC=1;MLEAF=0.500;MQ=49.89;MQ0=0;MQRankSum=-1.502;QD=1.11;ReadPosRankSum=2.392;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:60,10:70:99:106,0,2013
+chr1	44177	.	T	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DP=73;Dels=0.00;FS=7.693;HaplotypeScore=14.5600;MLEAC=1;MLEAF=0.500;MQ=49.07;MQ0=0;MQRankSum=0.080;QD=7.48;ReadPosRankSum=0.748;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:53,20:73:99:574,0,1711
+chr1	44183	.	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;DP=73;Dels=0.00;FS=3.202;HaplotypeScore=50.8308;MLEAC=1;MLEAF=0.500;MQ=49.60;MQ0=0;MQRankSum=-1.131;QD=1.08;ReadPosRankSum=-0.425;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:63,10:73:99:107,0,2164
+chr1	44188	.	G	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;DP=74;Dels=0.00;FS=14.435;HaplotypeScore=30.4305;MLEAC=1;MLEAF=0.500;MQ=48.97;MQ0=0;MQRankSum=-4.140;QD=6.90;ReadPosRankSum=-1.345;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,24:74:99:539,0,1696
+chr1	44191	.	C	G	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;DP=78;Dels=0.00;FS=1.989;HaplotypeScore=30.4305;MLEAC=1;MLEAF=0.500;MQ=49.48;MQ0=0;MQRankSum=3.081;QD=11.29;ReadPosRankSum=1.210;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:49,29:78:99:909,0,1490
+chr1	44202	.	T	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DP=70;Dels=0.00;FS=18.949;HaplotypeScore=45.1512;MLEAC=1;MLEAF=0.500;MQ=50.32;MQ0=0;MQRankSum=-3.780;QD=4.45;ReadPosRankSum=-1.041;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:53,17:70:99:340,0,1880
+chr1	44205	.	T	G	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DP=71;Dels=0.00;FS=2.009;HaplotypeScore=52.8564;MLEAC=1;MLEAF=0.500;MQ=50.01;MQ0=0;MQRankSum=2.066;QD=13.29;ReadPosRankSum=0.378;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,30:71:99:972,0,1251
+chr1	44214	.	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;DP=65;Dels=0.00;FS=6.471;HaplotypeScore=49.1081;MLEAC=1;MLEAF=0.500;MQ=49.76;MQ0=0;MQRankSum=-3.604;QD=0.55;ReadPosRankSum=-0.170;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:57,8:65:64:64,0,1916
+chr1	44224	.	C	T	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;DP=65;Dels=0.00;FS=11.066;HaplotypeScore=41.7947;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=0;MQRankSum=3.011;QD=10.97;ReadPosRankSum=-1.217;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,24:65:99:741,0,1311
+chr1	44226	.	C	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=35.0888;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=0;MQRankSum=0.468;QD=10.58;ReadPosRankSum=1.342;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:38,22:60:99:663,0,1231
+chr1	44227	.	T	C	1771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;DP=60;Dels=0.00;FS=3.739;HaplotypeScore=35.0888;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=0;MQRankSum=3.270;QD=29.53;ReadPosRankSum=-1.934;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:7,52:60:43:1800,0,43
+chr1	44239	.	C	T	1746.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=23.3747;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=35.23;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1775,138,0
+chr1	44240	.	C	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=48;Dels=0.00;FS=2.627;HaplotypeScore=23.3747;MLEAC=1;MLEAF=0.500;MQ=50.05;MQ0=0;MQRankSum=2.800;QD=10.58;ReadPosRankSum=1.054;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:30,18:48:99:536,0,932
+chr1	44241	.	T	C	1696.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=23.3747;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=27.69;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1725,135,0
+chr1	44248	.	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DP=48;Dels=0.00;FS=9.054;HaplotypeScore=23.3746;MLEAC=1;MLEAF=0.500;MQ=50.11;MQ0=0;MQRankSum=-4.405;QD=3.08;ReadPosRankSum=2.120;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:38,10:48:99:176,0,1356
+chr1	44249	.	T	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DP=49;Dels=0.00;FS=8.239;HaplotypeScore=24.3740;MLEAC=1;MLEAF=0.500;MQ=49.98;MQ0=0;MQRankSum=-4.565;QD=3.65;ReadPosRankSum=1.809;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:38,11:49:99:207,0,1354
+chr1	44258	.	T	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;DP=54;Dels=0.00;FS=4.366;HaplotypeScore=24.1638;MLEAC=1;MLEAF=0.500;MQ=48.73;MQ0=0;MQRankSum=4.329;QD=10.64;ReadPosRankSum=0.018;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:35,19:54:99:603,0,1025
+chr1	44278	.	A	G	1907.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.7023;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=34.69;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1936,153,0
+chr1	44282	.	C	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;DP=57;Dels=0.00;FS=1.055;HaplotypeScore=8.1141;MLEAC=1;MLEAF=0.500;MQ=45.40;MQ0=0;MQRankSum=4.194;QD=11.70;ReadPosRankSum=-1.204;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:33,24:57:99:695,0,881
+chr1	44295	.	A	T	11.12	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=9.3874;MLEAC=1;MLEAF=0.500;MQ=43.43;MQ0=2;MQRankSum=-2.337;QD=0.18;ReadPosRankSum=-0.230;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:56,7:63:39:39,0,1747
+chr1	44304	.	T	C	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=23.9832;MLEAC=1;MLEAF=0.500;MQ=43.23;MQ0=2;MQRankSum=4.033;QD=11.74;ReadPosRankSum=0.255;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:37,25:62:99:756,0,963
+chr1	44307	.	C	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DP=60;Dels=0.00;FS=6.252;HaplotypeScore=26.1832;MLEAC=1;MLEAF=0.500;MQ=43.38;MQ0=2;MQRankSum=-0.025;QD=7.33;ReadPosRankSum=-1.252;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,18:60:99:468,0,1201
+chr1	44311	.	A	G	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=30.9134;MLEAC=1;MLEAF=0.500;MQ=43.15;MQ0=2;MQRankSum=-2.338;QD=10.90;ReadPosRankSum=-0.016;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:31,29:60:99:682,0,949
+chr1	44317	.	T	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;DP=59;Dels=0.00;FS=4.227;HaplotypeScore=16.7737;MLEAC=1;MLEAF=0.500;MQ=42.80;MQ0=2;MQRankSum=0.606;QD=6.47;ReadPosRankSum=-2.031;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,17:59:99:410,0,1154
+chr1	44335	.	T	A	1721.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=18.1882;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=2;QD=29.18;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1750,144,0
+chr1	44342	.	C	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;DP=61;Dels=0.00;FS=4.324;HaplotypeScore=34.0871;MLEAC=1;MLEAF=0.500;MQ=42.11;MQ0=2;MQRankSum=-1.601;QD=6.18;ReadPosRankSum=0.691;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:39,16:61:99:405,0,1260
+chr1	44367	.	C	T	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;DP=57;Dels=0.00;FS=1.029;HaplotypeScore=9.9194;MLEAC=1;MLEAF=0.500;MQ=42.27;MQ0=2;MQRankSum=2.251;QD=15.05;ReadPosRankSum=0.261;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:28,29:57:99:886,0,731
+chr1	44402	.	T	C	1512.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=27.76;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1541,117,0
+chr1	44414	.	C	T	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=14.3006;MLEAC=1;MLEAF=0.500;MQ=44.91;MQ0=0;MQRankSum=0.590;QD=12.70;ReadPosRankSum=1.928;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:32,22:54:99:714,0,919
+chr1	44417	.	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;DP=59;Dels=0.00;FS=7.276;HaplotypeScore=15.3006;MLEAC=1;MLEAF=0.500;MQ=45.19;MQ0=0;MQRankSum=-3.435;QD=2.13;ReadPosRankSum=-2.793;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:48,11:59:99:154,0,1624
+chr1	44447	.	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=44.70;MQ0=0;MQRankSum=-0.207;QD=1.35;ReadPosRankSum=-0.960;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,7:57:99:105,0,1613
+chr1	44452	.	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DP=58;Dels=0.00;FS=3.537;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=44.96;MQ0=0;MQRankSum=-0.530;QD=2.01;ReadPosRankSum=-0.755;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:50,8:58:99:145,0,1592
+chr1	44473	.	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;DP=69;Dels=0.00;FS=9.852;HaplotypeScore=9.6363;MLEAC=1;MLEAF=0.500;MQ=44.99;MQ0=0;MQRankSum=-4.187;QD=0.71;ReadPosRankSum=0.356;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:57,12:69:77:77,0,2026
+chr1	44477	.	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;DP=69;Dels=0.00;FS=1.548;HaplotypeScore=9.6363;MLEAC=1;MLEAF=0.500;MQ=45.04;MQ0=0;MQRankSum=-0.984;QD=1.30;ReadPosRankSum=2.427;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:61,8:69:99:118,0,1985
+chr1	44478	.	G	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;DP=70;Dels=0.00;FS=1.536;HaplotypeScore=9.6363;MLEAC=1;MLEAF=0.500;MQ=45.34;MQ0=0;MQRankSum=-0.858;QD=1.21;ReadPosRankSum=2.630;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:62,8:70:99:113,0,2020
+chr1	44484	.	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DP=69;Dels=0.00;FS=1.548;HaplotypeScore=36.7273;MLEAC=1;MLEAF=0.500;MQ=45.51;MQ0=0;MQRankSum=-1.246;QD=1.13;ReadPosRankSum=2.427;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:61,8:69:99:106,0,1981
+chr1	44498	.	A	C	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.03;FS=1.285;HaplotypeScore=66.6807;MLEAC=1;MLEAF=0.500;MQ=46.25;MQ0=0;MQRankSum=1.067;QD=5.03;ReadPosRankSum=0.460;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,12:57:99:325,0,1534
+chr1	44501	.	T	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;DP=54;Dels=0.00;FS=2.868;HaplotypeScore=45.5620;MLEAC=1;MLEAF=0.500;MQ=45.82;MQ0=0;MQRankSum=0.142;QD=6.25;ReadPosRankSum=-0.951;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:41,13:54:99:366,0,1280
+chr1	44503	.	C	T	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DP=55;Dels=0.00;FS=2.476;HaplotypeScore=45.5620;MLEAC=1;MLEAF=0.500;MQ=45.92;MQ0=0;MQRankSum=-0.130;QD=18.18;ReadPosRankSum=1.776;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:21,34:55:99:1028,0,672
+chr1	44505	.	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;DP=56;Dels=0.00;FS=1.565;HaplotypeScore=46.3941;MLEAC=1;MLEAF=0.500;MQ=46.01;MQ0=0;MQRankSum=-0.697;QD=1.69;ReadPosRankSum=-0.617;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,7:56:99:123,0,1510
+chr1	44517	.	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.8138;MLEAC=1;MLEAF=0.500;MQ=44.77;MQ0=0;MQRankSum=-3.350;QD=2.42;ReadPosRankSum=2.577;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:43,11:54:99:159,0,1479
+chr1	44560	.	G	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;DP=43;Dels=0.00;FS=9.300;HaplotypeScore=4.7566;MLEAC=1;MLEAF=0.500;MQ=41.88;MQ0=0;MQRankSum=0.807;QD=9.95;ReadPosRankSum=-0.012;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:26,17:43:99:456,0,729
+chr1	44572	.	C	A	1243.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;MQRankSum=0.866;QD=31.09;ReadPosRankSum=0.520;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:1,39:40:99:1272,105,0
+chr1	44587	.	T	C	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;DP=38;Dels=0.00;FS=13.265;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=40.46;MQ0=0;MQRankSum=-1.286;QD=9.10;ReadPosRankSum=-0.547;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,16:38:99:374,0,691
+chr1	44614	.	C	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;DP=43;Dels=0.00;FS=1.868;HaplotypeScore=14.4733;MLEAC=1;MLEAF=0.500;MQ=42.93;MQ0=0;MQRankSum=0.020;QD=1.11;ReadPosRankSum=0.260;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:32,6:43:76:76,0,1119
+chr1	44624	.	G	A	10.2	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;DP=51;Dels=0.00;FS=12.856;HaplotypeScore=21.4215;MLEAC=1;MLEAF=0.500;MQ=42.84;MQ0=0;MQRankSum=-2.880;QD=0.20;ReadPosRankSum=1.272;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,6:51:38:38,0,1509
+chr1	44632	.	A	T	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DP=54;Dels=0.00;FS=2.363;HaplotypeScore=21.5373;MLEAC=1;MLEAF=0.500;MQ=42.79;MQ0=0;MQRankSum=1.153;QD=12.81;ReadPosRankSum=-0.378;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:32,22:54:99:720,0,934
+chr1	44637	.	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=22.5160;MLEAC=1;MLEAF=0.500;MQ=42.79;MQ0=0;MQRankSum=-0.673;QD=1.44;ReadPosRankSum=0.812;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,9:54:99:106,0,1529
+chr1	44642	.	C	T	18.82	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DP=52;Dels=0.00;FS=20.166;HaplotypeScore=24.5152;MLEAC=1;MLEAF=0.500;MQ=43.10;MQ0=0;MQRankSum=-3.351;QD=0.36;ReadPosRankSum=-0.241;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:45,7:52:47:47,0,1525
+chr1	44646	.	C	T	25.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DP=50;Dels=0.00;FS=21.581;HaplotypeScore=15.6098;MLEAC=1;MLEAF=0.500;MQ=43.77;MQ0=0;MQRankSum=-3.383;QD=0.52;ReadPosRankSum=-0.671;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:43,7:50:54:54,0,1474
+chr1	44657	.	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DP=58;Dels=0.00;FS=2.599;HaplotypeScore=22.8584;MLEAC=1;MLEAF=0.500;MQ=44.43;MQ0=0;MQRankSum=2.619;QD=7.03;ReadPosRankSum=0.607;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:42,15:58:99:436,0,1315
+chr1	44662	.	T	C	18.82	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=55;Dels=0.00;FS=16.338;HaplotypeScore=20.8592;MLEAC=1;MLEAF=0.500;MQ=44.81;MQ0=0;MQRankSum=-3.253;QD=0.34;ReadPosRankSum=-0.634;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:49,6:55:47:47,0,1653
+chr1	44666	.	T	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DP=51;Dels=0.00;FS=4.523;HaplotypeScore=18.8632;MLEAC=1;MLEAF=0.500;MQ=45.50;MQ0=0;MQRankSum=-3.198;QD=5.00;ReadPosRankSum=0.813;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:37,14:51:99:283,0,1321
+chr1	44682	.	C	T	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;DP=48;Dels=0.00;FS=1.217;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=44.53;MQ0=0;MQRankSum=-2.438;QD=21.25;ReadPosRankSum=-0.034;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:14,34:48:99:1048,0,416
+chr1	44699	.	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=33.23;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1424,117,0
+chr1	44721	.	A	T	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DP=38;Dels=0.00;FS=2.913;HaplotypeScore=8.5355;MLEAC=1;MLEAF=0.500;MQ=38.46;MQ0=0;MQRankSum=1.227;QD=11.65;ReadPosRankSum=1.020;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:22,16:38:99:471,0,475
+chr1	44722	.	G	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;DP=40;Dels=0.00;FS=1.222;HaplotypeScore=8.5355;MLEAC=1;MLEAF=0.500;MQ=38.48;MQ0=0;MQRankSum=0.137;QD=8.77;ReadPosRankSum=0.520;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:23,17:40:99:379,0,602
+chr1	44747	.	A	G	853.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=2;QD=23.72;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:75:882,75,0
+chr1	44750	.	T	C	772.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=2;QD=22.08;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:69:801,69,0
+chr1	44764	.	G	A	13.95	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=2;MQRankSum=-0.925;QD=0.33;ReadPosRankSum=0.107;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	0/1:35,7:42:42:42,0,799
+chr1	44766	.	G	A	933.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=2;QD=23.34;EFF=DOWNSTREAM(MODIFIER||||Cc01g00040|mRNA||GSCOCT00012436001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:81:962,81,0
+chr1	44844	.	C	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.998;DP=50;Dels=0.00;FS=1.117;HaplotypeScore=13.6215;MLEAC=1;MLEAF=0.500;MQ=39.32;MQ0=0;MQRankSum=0.233;QD=13.06;ReadPosRankSum=0.233;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,25:50:99:681,0,649
+chr1	44846	.	A	G	1523.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=13.5548;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=32.42;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1552,123,0
+chr1	44848	.	G	A	26.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;DP=50;Dels=0.00;FS=1.565;HaplotypeScore=12.7662;MLEAC=1;MLEAF=0.500;MQ=40.79;MQ0=0;MQRankSum=-2.924;QD=0.54;ReadPosRankSum=1.522;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:42,8:50:55:55,0,1346
+chr1	44875	.	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.7552;MLEAC=1;MLEAF=0.500;MQ=43.15;MQ0=0;MQRankSum=-1.397;QD=3.57;ReadPosRankSum=-1.910;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:49,14:63:99:253,0,1577
+chr1	44905	.	C	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;DP=72;Dels=0.00;FS=2.379;HaplotypeScore=14.6636;MLEAC=1;MLEAF=0.500;MQ=43.09;MQ0=1;MQRankSum=0.928;QD=8.39;ReadPosRankSum=-1.284;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:49,23:72:99:632,0,1456
+chr1	44912	.	A	G	1743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677;DP=68;Dels=0.00;FS=1.336;HaplotypeScore=30.8580;MLEAC=1;MLEAF=0.500;MQ=43.96;MQ0=2;MQRankSum=-0.403;QD=25.64;ReadPosRankSum=-1.903;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:15,53:68:99:1772,0,267
+chr1	44920	.	T	C	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.714;DP=73;Dels=0.00;FS=7.931;HaplotypeScore=5.9984;MLEAC=1;MLEAF=0.500;MQ=42.33;MQ0=4;MQRankSum=-0.128;QD=5.48;ReadPosRankSum=1.793;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:52,21:73:99:428,0,1524
+chr1	44950	.	T	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8653;MLEAC=1;MLEAF=0.500;MQ=38.40;MQ0=5;MQRankSum=0.127;QD=7.52;ReadPosRankSum=1.502;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:48,23:72:99:570,0,1227
+chr1	44968	.	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8653;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=5;QD=25.21;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1541,132,0
+chr1	44980	.	T	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;DP=53;Dels=0.00;FS=1.794;HaplotypeScore=4.8653;MLEAC=1;MLEAF=0.500;MQ=32.25;MQ0=6;MQRankSum=0.207;QD=17.41;ReadPosRankSum=-1.100;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:6,47:53:53:951,0,53
+chr1	44999	.	A	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=8.8333;MLEAC=1;MLEAF=0.500;MQ=30.81;MQ0=6;MQRankSum=-2.111;QD=4.22;ReadPosRankSum=-0.168;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:26,22:48:99:231,0,671
+chr1	45005	.	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;DP=44;Dels=0.00;FS=5.608;HaplotypeScore=21.5580;MLEAC=1;MLEAF=0.500;MQ=30.42;MQ0=4;MQRankSum=1.637;QD=10.11;ReadPosRankSum=1.096;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:473,0,341
+chr1	45011	.	A	G	805.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=15.6852;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=2;QD=21.20;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,37:38:78:834,78,0
+chr1	45027	.	C	T	849.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=4;QD=20.23;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,42:42:78:878,78,0
+chr1	45055	.	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;DP=71;Dels=0.00;FS=12.767;HaplotypeScore=11.6629;MLEAC=1;MLEAF=0.500;MQ=43.94;MQ0=9;MQRankSum=-0.438;QD=0.94;ReadPosRankSum=-0.182;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:53,15:71:95:95,0,1604
+chr1	45090	.	C	T	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DP=87;Dels=0.00;FS=4.246;HaplotypeScore=45.0201;MLEAC=1;MLEAF=0.500;MQ=49.72;MQ0=1;MQRankSum=3.081;QD=12.37;ReadPosRankSum=-0.758;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:52,34:87:99:1104,0,1445
+chr1	45092	.	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DP=86;Dels=0.00;FS=18.933;HaplotypeScore=45.0201;MLEAC=1;MLEAF=0.500;MQ=49.98;MQ0=1;MQRankSum=-0.050;QD=0.57;ReadPosRankSum=-0.221;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:77,9:86:77:77,0,2524
+chr1	45093	.	A	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DP=84;Dels=0.04;FS=4.282;HaplotypeScore=44.0211;MLEAC=1;MLEAF=0.500;MQ=50.41;MQ0=1;MQRankSum=-2.754;QD=0.47;ReadPosRankSum=0.306;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:64,16:81:68:68,0,2273
+chr1	45100	.	A	T	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;DP=91;Dels=0.00;FS=1.785;HaplotypeScore=46.2820;MLEAC=1;MLEAF=0.500;MQ=50.63;MQ0=1;MQRankSum=0.114;QD=11.69;ReadPosRankSum=1.119;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:57,34:91:99:1092,0,1575
+chr1	45104	.	C	T	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DP=93;Dels=0.00;FS=5.290;HaplotypeScore=20.4240;MLEAC=1;MLEAF=0.500;MQ=51.13;MQ0=1;MQRankSum=1.122;QD=13.40;ReadPosRankSum=-0.845;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:55,38:93:99:1274,0,1627
+chr1	45135	.	C	T	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DP=93;Dels=0.00;FS=0.788;HaplotypeScore=3.1233;MLEAC=1;MLEAF=0.500;MQ=52.41;MQ0=0;MQRankSum=0.496;QD=15.87;ReadPosRankSum=-0.019;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1504,0,1552
+chr1	45155	.	C	T	3133.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=145.5703;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=1.436;QD=30.69;ReadPosRankSum=-0.338;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:1,81:82:99:3162,241,0
+chr1	45200	.	A	T	2113.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=1;QD=32.38;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2142,169,0
+chr1	45254	.	G	A	2049.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=29.96;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2078,156,0
+chr1	45271	.	C	T	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=1;MLEAF=0.500;MQ=48.86;MQ0=0;MQRankSum=0.761;QD=14.36;ReadPosRankSum=-0.072;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:31,26:58:99:861,0,1025
+chr1	45272	.	C	A	2207.77	.	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=33.93;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2236,169,0
+chr1	45286	.	G	A	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7329;MLEAC=1;MLEAF=0.500;MQ=49.43;MQ0=0;MQRankSum=0.497;QD=16.06;ReadPosRankSum=0.752;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:33,31:64:99:1056,0,1087
+chr1	45290	.	T	A	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;DP=65;Dels=0.00;FS=2.073;HaplotypeScore=1.9988;MLEAC=1;MLEAF=0.500;MQ=49.75;MQ0=0;MQRankSum=-0.151;QD=17.64;ReadPosRankSum=0.190;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:31,34:65:99:1175,0,1019
+chr1	45343	.	T	A	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;DP=74;Dels=0.00;FS=3.119;HaplotypeScore=3.9919;MLEAC=1;MLEAF=0.500;MQ=51.54;MQ0=0;MQRankSum=1.189;QD=16.85;ReadPosRankSum=0.605;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:37,37:74:99:1275,0,1131
+chr1	45344	.	G	A	2859.77	.	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9920;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=33.68;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2888,220,0
+chr1	45355	.	T	C	2778.77	.	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=24.35;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2807,211,0
+chr1	45366	.	A	C	2847.77	.	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=31.96;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2876,220,0
+chr1	45377	.	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;DP=72;Dels=0.00;FS=27.679;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=50.59;MQ0=0;MQRankSum=-2.895;QD=0.71;ReadPosRankSum=-1.328;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:63,9:72:79:79,0,2293
+chr1	45382	.	A	G	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=74;Dels=0.00;FS=24.375;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=50.91;MQ0=0;MQRankSum=-3.126;QD=0.20;ReadPosRankSum=0.050;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:65,9:74:43:43,0,2344
+chr1	45385	.	T	A	2874.77	.	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.9996;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=27.46;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2903,220,0
+chr1	45401	.	T	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DP=75;Dels=0.00;FS=42.438;HaplotypeScore=1.8656;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=0;MQRankSum=-2.624;QD=2.74;ReadPosRankSum=2.484;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:62,13:75:99:234,0,2260
+chr1	45425	.	T	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DP=62;Dels=0.00;FS=32.888;HaplotypeScore=11.8192;MLEAC=1;MLEAF=0.500;MQ=52.99;MQ0=0;MQRankSum=-3.715;QD=3.33;ReadPosRankSum=2.040;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:50,12:62:99:235,0,1811
+chr1	45428	.	C	A	2117.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=21.6418;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=27.70;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2146,163,0
+chr1	45430	.	C	A	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;DP=50;Dels=0.00;FS=4.121;HaplotypeScore=21.6418;MLEAC=1;MLEAF=0.500;MQ=53.45;MQ0=0;MQRankSum=0.980;QD=12.74;ReadPosRankSum=0.446;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:30,20:50:99:665,0,987
+chr1	45435	.	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=30.4494;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=26.85;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1880,141,0
+chr1	45436	.	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;DP=48;Dels=0.00;FS=17.629;HaplotypeScore=19.6275;MLEAC=1;MLEAF=0.500;MQ=54.52;MQ0=0;MQRankSum=-3.668;QD=3.45;ReadPosRankSum=0.470;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:38,10:48:99:194,0,1412
+chr1	45442	.	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;DP=53;Dels=0.00;FS=20.851;HaplotypeScore=20.6274;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=0;MQRankSum=-3.761;QD=3.49;ReadPosRankSum=-0.055;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:42,11:53:99:213,0,1458
+chr1	45445	.	G	A	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;DP=54;Dels=0.00;FS=3.890;HaplotypeScore=20.6274;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=0;MQRankSum=0.857;QD=15.44;ReadPosRankSum=-0.441;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:28,26:54:99:862,0,877
+chr1	45455	.	C	T	1668.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=21.9167;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=33.46;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1697,132,0
+chr1	45456	.	A	G	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;DP=47;Dels=0.00;FS=15.317;HaplotypeScore=22.9164;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=0;MQRankSum=-2.324;QD=20.91;ReadPosRankSum=-1.560;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:16,31:47:99:1011,0,399
+chr1	45458	.	C	A	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943;DP=49;Dels=0.00;FS=1.157;HaplotypeScore=24.9247;MLEAC=1;MLEAF=0.500;MQ=54.60;MQ0=0;MQRankSum=0.389;QD=9.83;ReadPosRankSum=0.305;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:32,17:49:99:510,0,1061
+chr1	45460	.	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;DP=51;Dels=0.00;FS=20.268;HaplotypeScore=33.8333;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=-2.966;QD=2.00;ReadPosRankSum=-0.712;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:43,8:51:99:130,0,1482
+chr1	45468	.	T	C	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;DP=54;Dels=0.00;FS=11.572;HaplotypeScore=42.6787;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=3.688;QD=9.07;ReadPosRankSum=0.354;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:37,17:54:99:518,0,1120
+chr1	45469	.	C	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;DP=54;Dels=0.00;FS=25.872;HaplotypeScore=26.8594;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=-2.910;QD=1.38;ReadPosRankSum=-0.791;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:46,8:54:99:103,0,1615
+chr1	45473	.	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;DP=57;Dels=0.00;FS=27.090;HaplotypeScore=18.7370;MLEAC=1;MLEAF=0.500;MQ=53.42;MQ0=0;MQRankSum=-3.140;QD=1.47;ReadPosRankSum=-0.864;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:48,9:57:99:112,0,1689
+chr1	45486	.	T	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DP=59;Dels=0.00;FS=26.386;HaplotypeScore=19.2723;MLEAC=1;MLEAF=0.500;MQ=52.31;MQ0=0;MQRankSum=-3.044;QD=0.72;ReadPosRankSum=-0.122;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:51,8:59:71:71,0,1772
+chr1	45491	.	T	C	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;DP=56;Dels=0.00;FS=11.681;HaplotypeScore=17.2627;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=0;MQRankSum=2.678;QD=7.98;ReadPosRankSum=-0.991;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:39,16:56:99:475,0,1141
+chr1	45492	.	A	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;DP=56;Dels=0.00;FS=36.390;HaplotypeScore=17.2627;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=0;MQRankSum=-3.873;QD=1.34;ReadPosRankSum=-0.513;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:46,10:56:99:103,0,1545
+chr1	45515	.	A	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=55;Dels=0.00;FS=18.588;HaplotypeScore=36.5629;MLEAC=1;MLEAF=0.500;MQ=47.91;MQ0=0;MQRankSum=1.483;QD=4.54;ReadPosRankSum=1.105;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:44,11:55:99:278,0,1358
+chr1	45516	.	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DP=55;Dels=0.00;FS=32.991;HaplotypeScore=36.5629;MLEAC=1;MLEAF=0.500;MQ=47.72;MQ0=0;MQRankSum=-5.064;QD=1.89;ReadPosRankSum=0.051;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:43,12:55:99:132,0,1550
+chr1	45518	.	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;DP=57;Dels=0.00;FS=26.291;HaplotypeScore=37.5622;MLEAC=1;MLEAF=0.500;MQ=47.75;MQ0=0;MQRankSum=-5.240;QD=2.29;ReadPosRankSum=-0.162;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:44,13:57:99:159,0,1581
+chr1	45530	.	G	A	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;DP=61;Dels=0.00;FS=1.071;HaplotypeScore=2.8319;MLEAC=1;MLEAF=0.500;MQ=46.23;MQ0=1;MQRankSum=4.182;QD=17.34;ReadPosRankSum=-0.133;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:27,32:61:99:1086,0,615
+chr1	45538	.	T	C	2219.77	.	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.8319;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=1;QD=33.13;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2248,175,0
+chr1	45549	.	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;DP=67;Dels=0.00;FS=21.346;HaplotypeScore=8.9982;MLEAC=1;MLEAF=0.500;MQ=45.62;MQ0=1;MQRankSum=1.140;QD=2.58;ReadPosRankSum=0.504;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:58,9:67:99:201,0,1627
+chr1	45550	.	A	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;DP=67;Dels=0.00;FS=0.940;HaplotypeScore=8.9982;MLEAC=1;MLEAF=0.500;MQ=46.27;MQ0=1;MQRankSum=-4.933;QD=9.31;ReadPosRankSum=0.982;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:34,33:67:99:652,0,1160
+chr1	45576	.	A	T	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;DP=86;Dels=0.00;FS=0.996;HaplotypeScore=31.9081;MLEAC=1;MLEAF=0.500;MQ=44.67;MQ0=1;MQRankSum=-3.062;QD=5.30;ReadPosRankSum=0.000;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:60,26:86:99:484,0,1787
+chr1	45578	.	A	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;DP=84;Dels=0.00;FS=6.011;HaplotypeScore=57.3640;MLEAC=1;MLEAF=0.500;MQ=44.80;MQ0=1;MQRankSum=-6.448;QD=10.99;ReadPosRankSum=-1.326;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:40,44:84:99:951,0,1314
+chr1	45586	.	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;DP=80;Dels=0.00;FS=1.341;HaplotypeScore=88.2105;MLEAC=1;MLEAF=0.500;MQ=45.39;MQ0=1;MQRankSum=-4.105;QD=0.92;ReadPosRankSum=-0.165;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:66,14:80:99:102,0,2084
+chr1	45587	.	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;DP=80;Dels=0.00;FS=1.232;HaplotypeScore=75.5755;MLEAC=1;MLEAF=0.500;MQ=45.39;MQ0=1;MQRankSum=-4.092;QD=1.20;ReadPosRankSum=-0.086;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:66,14:80:99:124,0,2088
+chr1	45588	.	A	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;DP=81;Dels=0.00;FS=1.248;HaplotypeScore=76.3642;MLEAC=1;MLEAF=0.500;MQ=45.60;MQ0=1;MQRankSum=-4.082;QD=1.15;ReadPosRankSum=0.026;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:67,14:81:99:121,0,2109
+chr1	45600	.	G	A	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;DP=109;Dels=0.00;FS=1.699;HaplotypeScore=36.6790;MLEAC=1;MLEAF=0.500;MQ=42.25;MQ0=2;MQRankSum=-6.013;QD=12.19;ReadPosRankSum=0.815;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:46,63:109:99:1357,0,1334
+chr1	45609	.	A	C	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DP=114;Dels=0.00;FS=0.838;HaplotypeScore=28.9230;MLEAC=1;MLEAF=0.500;MQ=42.08;MQ0=2;MQRankSum=-1.161;QD=6.55;ReadPosRankSum=1.490;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:80,34:114:99:775,0,2078
+chr1	45619	.	C	T	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;DP=119;Dels=0.00;FS=2.580;HaplotypeScore=3.6750;MLEAC=1;MLEAF=0.500;MQ=40.98;MQ0=2;MQRankSum=-0.216;QD=7.02;ReadPosRankSum=1.214;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:83,36:119:99:864,0,1946
+chr1	45632	.	G	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=119;Dels=0.00;FS=0.893;HaplotypeScore=6.6304;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=2;MQRankSum=-5.708;QD=2.94;ReadPosRankSum=1.745;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:82,37:119:99:378,0,2346
+chr1	45659	.	C	T	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=71.6402;MLEAC=1;MLEAF=0.500;MQ=41.20;MQ0=3;MQRankSum=-6.632;QD=3.24;ReadPosRankSum=0.893;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:81,39:120:99:417,0,2397
+chr1	45660	.	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;DP=117;Dels=0.00;FS=2.575;HaplotypeScore=63.3294;MLEAC=1;MLEAF=0.500;MQ=41.50;MQ0=3;MQRankSum=-1.543;QD=0.31;ReadPosRankSum=1.048;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:102,14:117:64:64,0,2593
+chr1	45663	.	C	T	27.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DP=116;Dels=0.00;FS=2.578;HaplotypeScore=119.3449;MLEAC=1;MLEAF=0.500;MQ=41.26;MQ0=3;MQRankSum=-1.489;QD=0.24;ReadPosRankSum=1.354;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:102,14:116:56:56,0,2716
+chr1	45672	.	T	G	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;DP=105;Dels=0.00;FS=0.751;HaplotypeScore=110.4878;MLEAC=1;MLEAF=0.500;MQ=43.52;MQ0=2;MQRankSum=-5.196;QD=8.45;ReadPosRankSum=0.761;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:60,45:105:99:915,0,1759
+chr1	45673	.	G	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DP=105;Dels=0.00;FS=0.897;HaplotypeScore=111.2217;MLEAC=1;MLEAF=0.500;MQ=43.63;MQ0=2;MQRankSum=-5.747;QD=1.35;ReadPosRankSum=1.937;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:80,24:105:99:170,0,2516
+chr1	45679	.	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;DP=116;Dels=0.00;FS=2.067;HaplotypeScore=85.5662;MLEAC=1;MLEAF=0.500;MQ=43.87;MQ0=2;MQRankSum=-0.621;QD=3.21;ReadPosRankSum=-0.794;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:80,23:116:99:401,0,2219
+chr1	45694	.	A	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.354;DP=125;Dels=0.00;FS=4.243;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.00;MQ0=2;MQRankSum=-5.132;QD=1.74;ReadPosRankSum=-0.229;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:100,25:125:99:246,0,3244
+chr1	45707	.	T	C	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;DP=121;Dels=0.00;FS=6.874;HaplotypeScore=39.0259;MLEAC=1;MLEAF=0.500;MQ=45.33;MQ0=2;MQRankSum=-7.286;QD=19.11;ReadPosRankSum=0.335;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:34,87:121:99:2340,0,940
+chr1	45717	.	G	A	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;DP=109;Dels=0.00;FS=1.591;HaplotypeScore=73.3895;MLEAC=1;MLEAF=0.500;MQ=45.70;MQ0=2;MQRankSum=-1.982;QD=6.89;ReadPosRankSum=2.664;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:65,43:109:99:779,0,1809
+chr1	45724	.	C	G	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DP=100;Dels=0.00;FS=0.957;HaplotypeScore=83.7585;MLEAC=1;MLEAF=0.500;MQ=46.80;MQ0=2;MQRankSum=-1.008;QD=5.78;ReadPosRankSum=1.509;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:62,25:100:99:606,0,1819
+chr1	45725	.	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;DP=98;Dels=0.00;FS=0.966;HaplotypeScore=96.3231;MLEAC=1;MLEAF=0.500;MQ=46.88;MQ0=2;MQRankSum=5.039;QD=4.35;ReadPosRankSum=-2.841;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:79,19:98:99:455,0,2414
+chr1	45727	.	A	G	3406.77	.	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=131.4140;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=2;QD=34.41;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3435,274,0
+chr1	45728	.	T	C	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.069;DP=100;Dels=0.00;FS=12.270;HaplotypeScore=130.4542;MLEAC=1;MLEAF=0.500;MQ=46.88;MQ0=2;MQRankSum=-0.733;QD=1.80;ReadPosRankSum=3.540;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:87,13:100:99:208,0,2628
+chr1	45729	.	A	G	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;DP=98;Dels=0.00;FS=7.239;HaplotypeScore=143.0188;MLEAC=1;MLEAF=0.500;MQ=47.26;MQ0=2;MQRankSum=-2.286;QD=9.53;ReadPosRankSum=1.533;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:62,35:98:99:962,0,1812
+chr1	45733	.	C	T	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.767;DP=103;Dels=0.00;FS=11.158;HaplotypeScore=175.1243;MLEAC=1;MLEAF=0.500;MQ=45.48;MQ0=2;MQRankSum=-0.096;QD=2.07;ReadPosRankSum=2.500;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:90,13:103:99:241,0,2768
+chr1	45744	.	A	T	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;DP=97;Dels=0.00;FS=3.403;HaplotypeScore=141.3914;MLEAC=1;MLEAF=0.500;MQ=43.52;MQ0=6;MQRankSum=-2.164;QD=0.15;ReadPosRankSum=0.983;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:86,11:97:43:43,0,2548
+chr1	45746	.	C	G	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871;DP=98;Dels=0.00;FS=5.658;HaplotypeScore=144.7874;MLEAC=1;MLEAF=0.500;MQ=43.28;MQ0=6;MQRankSum=-2.422;QD=11.04;ReadPosRankSum=-1.217;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:57,41:98:99:1110,0,1505
+chr1	45749	.	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.332;DP=105;Dels=0.00;FS=20.438;HaplotypeScore=99.1311;MLEAC=1;MLEAF=0.500;MQ=42.61;MQ0=6;MQRankSum=-1.228;QD=0.58;ReadPosRankSum=1.410;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:93,12:105:89:89,0,2686
+chr1	45752	.	C	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=60.4379;MLEAC=1;MLEAF=0.500;MQ=42.32;MQ0=7;MQRankSum=3.784;QD=2.22;ReadPosRankSum=3.512;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:91,16:107:99:266,0,2493
+chr1	45756	.	T	C	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=54.1966;MLEAC=1;MLEAF=0.500;MQ=41.83;MQ0=7;MQRankSum=3.711;QD=3.90;ReadPosRankSum=2.139;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:86,19:105:99:438,0,2316
+chr1	45774	.	G	A	2856.77	.	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.8661;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=8;QD=29.15;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2885,247,0
+chr1	45792	.	A	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=73;Dels=0.00;FS=9.059;HaplotypeScore=58.8320;MLEAC=1;MLEAF=0.500;MQ=32.74;MQ0=7;MQRankSum=-2.340;QD=8.15;ReadPosRankSum=-0.727;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:47,26:73:99:623,0,946
+chr1	45793	.	A	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DP=74;Dels=0.00;FS=6.479;HaplotypeScore=58.8320;MLEAC=1;MLEAF=0.500;MQ=32.71;MQ0=7;MQRankSum=-1.025;QD=10.97;ReadPosRankSum=-1.339;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:42,32:74:99:840,0,770
+chr1	45796	.	T	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;DP=73;Dels=0.03;FS=11.097;HaplotypeScore=57.0004;MLEAC=1;MLEAF=0.500;MQ=32.88;MQ0=7;MQRankSum=-0.761;QD=2.38;ReadPosRankSum=3.011;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:55,16:71:99:202,0,1418
+chr1	45803	.	C	T	2095.77	.	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=66.1329;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=6;QD=27.58;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2124,183,0
+chr1	45826	.	A	T	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;DP=78;Dels=0.01;FS=3.363;HaplotypeScore=5.1586;MLEAC=1;MLEAF=0.500;MQ=36.05;MQ0=3;MQRankSum=-3.121;QD=14.28;ReadPosRankSum=2.318;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:31,46:77:99:1142,0,798
+chr1	45844	.	T	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=38.54;MQ0=3;MQRankSum=-3.089;QD=4.97;ReadPosRankSum=0.299;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:71,25:96:99:505,0,2123
+chr1	45863	.	A	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;DP=97;Dels=0.00;FS=0.931;HaplotypeScore=2.8214;MLEAC=1;MLEAF=0.500;MQ=39.70;MQ0=1;MQRankSum=3.322;QD=5.27;ReadPosRankSum=-0.737;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:72,22:97:99:539,0,2180
+chr1	45895	.	C	T	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;DP=86;Dels=0.00;FS=3.221;HaplotypeScore=19.6124;MLEAC=1;MLEAF=0.500;MQ=40.11;MQ0=2;MQRankSum=2.945;QD=7.57;ReadPosRankSum=1.653;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:61,25:86:99:679,0,1779
+chr1	45899	.	T	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DP=84;Dels=0.00;FS=5.870;HaplotypeScore=19.6124;MLEAC=1;MLEAF=0.500;MQ=39.85;MQ0=3;MQRankSum=-2.045;QD=4.13;ReadPosRankSum=-0.184;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:64,20:84:99:375,0,1957
+chr1	45911	.	C	T	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DP=77;Dels=0.00;FS=0.933;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.22;MQ0=3;MQRankSum=-3.291;QD=18.28;ReadPosRankSum=1.051;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:26,51:77:99:1436,0,660
+chr1	45928	.	G	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DP=63;Dels=0.00;FS=1.202;HaplotypeScore=13.5950;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=3;MQRankSum=-2.063;QD=3.84;ReadPosRankSum=-0.054;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:50,13:63:99:270,0,1333
+chr1	45929	.	C	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DP=63;Dels=0.00;FS=1.173;HaplotypeScore=13.5950;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=3;MQRankSum=-1.844;QD=3.39;ReadPosRankSum=0.603;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:48,15:63:99:242,0,1410
+chr1	45934	.	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=10.8117;MLEAC=1;MLEAF=0.500;MQ=38.27;MQ0=3;MQRankSum=-1.596;QD=3.36;ReadPosRankSum=0.489;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:41,14:55:99:213,0,1231
+chr1	45957	.	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DP=26;Dels=0.00;FS=2.754;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.58;MQ0=3;MQRankSum=-0.385;QD=3.11;ReadPosRankSum=0.385;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:19,7:26:99:109,0,455
+chr1	45965	.	T	C	275.78	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=2;QD=19.70;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,14:14:27:304,27,0
+chr1	45991	.	T	C	138.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=1;QD=19.84;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,7:7:15:167,15,0
+chr1	46015	.	T	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;DP=29;Dels=0.00;FS=2.093;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=30.27;MQ0=6;MQRankSum=-1.304;QD=1.89;ReadPosRankSum=0.559;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,5:29:83:83,0,581
+chr1	46016	.	G	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;DP=29;Dels=0.00;FS=2.093;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=30.27;MQ0=6;MQRankSum=-1.304;QD=1.96;ReadPosRankSum=0.559;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,5:29:85:85,0,588
+chr1	46017	.	A	G	23.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=30.40;MQ0=7;MQRankSum=-1.457;QD=0.72;ReadPosRankSum=1.386;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,4:33:52:52,0,712
+chr1	46033	.	A	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DP=62;Dels=0.00;FS=17.444;HaplotypeScore=12.6635;MLEAC=1;MLEAF=0.500;MQ=30.48;MQ0=9;MQRankSum=0.683;QD=2.08;ReadPosRankSum=0.683;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:54,8:62:99:157,0,1251
+chr1	46036	.	C	T	1669.77	.	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=12.6635;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=10;QD=25.69;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1698,141,0
+chr1	46051	.	G	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DP=90;Dels=0.00;FS=6.369;HaplotypeScore=23.7978;MLEAC=1;MLEAF=0.500;MQ=30.89;MQ0=10;MQRankSum=-1.053;QD=5.56;ReadPosRankSum=1.556;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:64,26:90:99:529,0,1416
+chr1	46062	.	T	A	1644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;DP=97;Dels=0.00;FS=0.875;HaplotypeScore=24.1654;MLEAC=1;MLEAF=0.500;MQ=31.34;MQ0=10;MQRankSum=2.289;QD=16.96;ReadPosRankSum=2.106;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:35,62:97:99:1673,0,454
+chr1	46064	.	T	C	25.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DP=99;Dels=0.00;FS=7.151;HaplotypeScore=24.1654;MLEAC=1;MLEAF=0.500;MQ=31.03;MQ0=10;MQRankSum=-1.046;QD=0.26;ReadPosRankSum=-0.955;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:87,12:99:54:54,0,2051
+chr1	46073	.	A	T	1710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=18.4418;MLEAC=1;MLEAF=0.500;MQ=30.65;MQ0=10;MQRankSum=3.059;QD=15.41;ReadPosRankSum=3.428;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:47,64:111:99:1739,0,618
+chr1	46082	.	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DP=119;Dels=0.00;FS=2.762;HaplotypeScore=10.8856;MLEAC=1;MLEAF=0.500;MQ=30.51;MQ0=11;MQRankSum=-0.591;QD=0.29;ReadPosRankSum=1.598;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:105,14:119:63:63,0,2389
+chr1	46123	.	T	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DP=118;Dels=0.00;FS=2.620;HaplotypeScore=14.0204;MLEAC=1;MLEAF=0.500;MQ=29.74;MQ0=16;MQRankSum=0.492;QD=1.49;ReadPosRankSum=-1.118;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:99,19:118:99:204,0,2132
+chr1	46130	.	G	C	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.9254;MLEAC=1;MLEAF=0.500;MQ=28.94;MQ0=18;MQRankSum=2.438;QD=9.95;ReadPosRankSum=0.465;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:59,54:113:99:1153,0,946
+chr1	46134	.	A	C	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=28.45;MQ0=19;MQRankSum=3.071;QD=10.54;ReadPosRankSum=0.327;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:54,52:106:99:1146,0,745
+chr1	46151	.	A	C	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=29.0289;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=23;MQRankSum=2.003;QD=2.89;ReadPosRankSum=2.356;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:74,22:96:99:306,0,1339
+chr1	46158	.	G	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;DP=96;Dels=0.00;FS=1.341;HaplotypeScore=39.0149;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=24;MQRankSum=1.288;QD=2.65;ReadPosRankSum=2.514;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:71,22:96:99:283,0,1187
+chr1	46169	.	C	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=33.7549;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=25;MQRankSum=0.853;QD=1.55;ReadPosRankSum=-0.449;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:89,14:105:99:191,0,1752
+chr1	46178	.	A	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=40.5352;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=26;MQRankSum=1.065;QD=5.13;ReadPosRankSum=-0.715;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:72,32:106:99:572,0,1382
+chr1	46199	.	T	G	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=146.8097;MLEAC=1;MLEAF=0.500;MQ=35.49;MQ0=8;MQRankSum=0.538;QD=3.53;ReadPosRankSum=-0.275;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:73,17:90:99:346,0,1892
+chr1	46203	.	T	C	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DP=95;Dels=0.00;FS=4.713;HaplotypeScore=115.8313;MLEAC=1;MLEAF=0.500;MQ=36.73;MQ0=7;MQRankSum=2.951;QD=8.13;ReadPosRankSum=-0.685;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:63,30:95:99:801,0,1544
+chr1	46204	.	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;DP=99;Dels=0.00;FS=1.263;HaplotypeScore=104.3565;MLEAC=1;MLEAF=0.500;MQ=36.99;MQ0=7;MQRankSum=-3.158;QD=1.27;ReadPosRankSum=2.038;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:85,14:99:99:154,0,2379
+chr1	46209	.	G	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;DP=105;Dels=0.00;FS=2.148;HaplotypeScore=73.4158;MLEAC=1;MLEAF=0.500;MQ=37.74;MQ0=6;MQRankSum=-0.435;QD=4.08;ReadPosRankSum=1.073;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:81,22:105:99:457,0,2172
+chr1	46217	.	A	T	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;DP=107;Dels=0.00;FS=7.349;HaplotypeScore=36.8004;MLEAC=1;MLEAF=0.500;MQ=38.39;MQ0=6;MQRankSum=2.982;QD=7.89;ReadPosRankSum=-0.040;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:74,33:107:99:872,0,1991
+chr1	46223	.	A	T	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;DP=110;Dels=0.00;FS=16.066;HaplotypeScore=84.6532;MLEAC=1;MLEAF=0.500;MQ=39.41;MQ0=4;MQRankSum=3.566;QD=7.08;ReadPosRankSum=0.579;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:80,30:110:99:807,0,2258
+chr1	46259	.	A	C	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;DP=125;Dels=0.00;FS=8.544;HaplotypeScore=18.7174;MLEAC=1;MLEAF=0.500;MQ=39.29;MQ0=5;MQRankSum=-2.002;QD=5.90;ReadPosRankSum=0.318;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:68,35:125:99:766,0,2032
+chr1	46279	.	G	T	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DP=126;Dels=0.00;FS=16.583;HaplotypeScore=16.7188;MLEAC=1;MLEAF=0.500;MQ=36.95;MQ0=11;MQRankSum=-2.173;QD=10.43;ReadPosRankSum=1.178;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:62,64:126:99:1343,0,1687
+chr1	46288	.	A	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=25.9225;MLEAC=1;MLEAF=0.500;MQ=35.56;MQ0=13;MQRankSum=-0.037;QD=2.17;ReadPosRankSum=0.340;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:103,21:124:99:297,0,2552
+chr1	46293	.	T	A	3320.77	.	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=27.7337;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=13;QD=26.78;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3349,268,0
+chr1	46297	.	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DP=123;Dels=0.00;FS=1.177;HaplotypeScore=28.4676;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=13;MQRankSum=-1.404;QD=1.19;ReadPosRankSum=0.112;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:108,15:123:99:174,0,2572
+chr1	46303	.	T	C	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;DP=113;Dels=0.00;FS=5.395;HaplotypeScore=31.8222;MLEAC=1;MLEAF=0.500;MQ=33.25;MQ0=13;MQRankSum=-0.279;QD=4.00;ReadPosRankSum=0.573;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:82,31:113:99:480,0,1952
+chr1	46311	.	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;DP=106;Dels=0.00;FS=4.629;HaplotypeScore=71.9889;MLEAC=1;MLEAF=0.500;MQ=31.67;MQ0=13;MQRankSum=-1.015;QD=2.43;ReadPosRankSum=1.472;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:81,25:106:99:286,0,1902
+chr1	46313	.	T	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;DP=108;Dels=0.00;FS=12.679;HaplotypeScore=73.9836;MLEAC=1;MLEAF=0.500;MQ=31.59;MQ0=13;MQRankSum=-1.299;QD=2.52;ReadPosRankSum=0.178;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:85,23:108:99:300,0,1934
+chr1	46345	.	G	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=118;Dels=0.00;FS=1.369;HaplotypeScore=15.7222;MLEAC=1;MLEAF=0.500;MQ=30.78;MQ0=12;MQRankSum=0.291;QD=2.25;ReadPosRankSum=1.341;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:95,23:118:99:294,0,1983
+chr1	46349	.	A	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=20.2580;MLEAC=1;MLEAF=0.500;MQ=32.38;MQ0=11;MQRankSum=4.078;QD=2.87;ReadPosRankSum=-1.669;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:107,22:129:99:399,0,2225
+chr1	46360	.	A	G	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=144.3890;MLEAC=1;MLEAF=0.500;MQ=34.17;MQ0=10;MQRankSum=-0.032;QD=2.73;ReadPosRankSum=0.335;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:96,25:121:99:359,0,2284
+chr1	46365	.	G	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=86.2004;MLEAC=1;MLEAF=0.500;MQ=34.29;MQ0=10;MQRankSum=-0.261;QD=1.43;ReadPosRankSum=-0.928;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:99,19:118:99:197,0,2403
+chr1	46370	.	A	G	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DP=121;Dels=0.00;FS=0.988;HaplotypeScore=85.2005;MLEAC=1;MLEAF=0.500;MQ=35.94;MQ0=9;MQRankSum=3.941;QD=2.91;ReadPosRankSum=0.376;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:100,21:121:99:380,0,2395
+chr1	46385	.	A	T	1987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.9946;MLEAC=1;MLEAF=0.500;MQ=41.86;MQ0=1;MQRankSum=-4.706;QD=15.06;ReadPosRankSum=0.577;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:54,78:132:99:2016,0,1639
+chr1	46409	.	G	A	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.697;DP=147;Dels=0.00;FS=5.237;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.74;MQ0=1;MQRankSum=3.328;QD=4.48;ReadPosRankSum=2.209;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:119,28:147:99:687,0,3761
+chr1	46413	.	G	A	5462.77	.	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=1;QD=31.52;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,150:150:99:5491,421,0
+chr1	46441	.	G	A	5317.77	.	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=24.9609;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=1;QD=30.22;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,134:134:99:5346,400,0
+chr1	46442	.	A	T	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DP=132;Dels=0.00;FS=6.626;HaplotypeScore=24.9609;MLEAC=1;MLEAF=0.500;MQ=46.74;MQ0=1;MQRankSum=0.945;QD=6.40;ReadPosRankSum=2.434;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:101,31:132:99:873,0,3591
+chr1	46448	.	T	C	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DP=120;Dels=0.00;FS=1.884;HaplotypeScore=45.9537;MLEAC=1;MLEAF=0.500;MQ=46.81;MQ0=1;MQRankSum=-1.356;QD=4.39;ReadPosRankSum=0.293;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:97,23:120:99:555,0,3478
+chr1	46453	.	T	A	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=109;Dels=0.00;FS=3.408;HaplotypeScore=1.9892;MLEAC=1;MLEAF=0.500;MQ=47.07;MQ0=1;MQRankSum=-1.198;QD=4.26;ReadPosRankSum=1.024;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:89,20:109:99:493,0,3241
+chr1	46466	.	T	A	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;DP=98;Dels=0.00;FS=1.650;HaplotypeScore=38.9441;MLEAC=1;MLEAF=0.500;MQ=46.96;MQ0=1;MQRankSum=0.510;QD=14.13;ReadPosRankSum=0.930;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:52,46:98:99:1413,0,1799
+chr1	46486	.	T	A	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;DP=62;Dels=0.00;FS=0.975;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=43.40;MQ0=1;MQRankSum=-0.195;QD=14.11;ReadPosRankSum=-0.137;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:33,29:62:99:903,0,1128
+chr1	46489	.	A	G	2225.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7885;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=1;QD=30.18;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2254,175,0
+chr1	46505	.	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=39.03;MQ0=0;MQRankSum=1.388;QD=8.99;ReadPosRankSum=-1.130;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:15,8:24:99:244,0,502
+chr1	46511	.	G	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;DP=13;Dels=0.00;FS=2.920;HaplotypeScore=1.9890;MLEAC=1;MLEAF=0.500;MQ=36.55;MQ0=0;MQRankSum=0.592;QD=4.06;ReadPosRankSum=-1.099;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:10,3:13:81:81,0,328
+chr1	46521	.	C	T	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.9990;MLEAC=1;MLEAF=0.500;MQ=33.95;MQ0=0;MQRankSum=-0.198;QD=2.13;ReadPosRankSum=0.198;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:5,2:7:43:43,0,159
+chr1	46524	.	A	C	63.23	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=2.9781;MLEAC=1;MLEAF=0.500;MQ=32.80;MQ0=0;QD=12.65;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,3:5:9:107,9,0
+chr1	46567	.	T	C	942.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=28.57;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,33:33:81:971,81,0
+chr1	46579	.	T	C	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DP=54;Dels=0.00;FS=2.600;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=40.98;MQ0=0;MQRankSum=-0.248;QD=8.00;ReadPosRankSum=-0.266;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:36,18:54:99:460,0,1017
+chr1	46608	.	A	G	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;DP=97;Dels=0.00;FS=7.798;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=45.77;MQ0=1;MQRankSum=0.169;QD=6.28;ReadPosRankSum=0.458;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:70,27:97:99:637,0,2291
+chr1	46649	.	C	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;DP=128;Dels=0.00;FS=5.797;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=50.51;MQ0=1;MQRankSum=0.828;QD=4.14;ReadPosRankSum=-0.170;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:102,26:128:99:558,0,3425
+chr1	46661	.	T	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.8874;MLEAC=1;MLEAF=0.500;MQ=52.82;MQ0=1;MQRankSum=-1.890;QD=4.49;ReadPosRankSum=-0.533;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:98,25:123:99:580,0,3412
+chr1	46669	.	T	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=71.8527;MLEAC=1;MLEAF=0.500;MQ=54.24;MQ0=2;MQRankSum=-1.040;QD=2.79;ReadPosRankSum=0.046;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:94,17:111:99:338,0,3242
+chr1	46672	.	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;DP=101;Dels=0.00;FS=1.153;HaplotypeScore=51.8777;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=2;MQRankSum=0.285;QD=2.14;ReadPosRankSum=1.621;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:88,13:101:99:244,0,3052
+chr1	46675	.	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=49.8785;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=2;MQRankSum=0.732;QD=1.80;ReadPosRankSum=2.032;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:88,12:100:99:208,0,3050
+chr1	46676	.	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=65.8754;MLEAC=1;MLEAF=0.500;MQ=54.96;MQ0=2;MQRankSum=0.553;QD=1.87;ReadPosRankSum=1.978;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:87,12:99:99:213,0,3001
+chr1	46677	.	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;DP=103;Dels=0.00;FS=3.208;HaplotypeScore=64.9814;MLEAC=1;MLEAF=0.500;MQ=54.76;MQ0=2;MQRankSum=-2.102;QD=4.91;ReadPosRankSum=0.977;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:79,24:103:99:534,0,2803
+chr1	46680	.	A	G	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;DP=105;Dels=0.00;FS=3.142;HaplotypeScore=55.7727;MLEAC=1;MLEAF=0.500;MQ=54.17;MQ0=2;MQRankSum=-1.393;QD=4.65;ReadPosRankSum=1.009;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:81,23:105:99:516,0,2857
+chr1	46706	.	T	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7898;MLEAC=1;MLEAF=0.500;MQ=51.38;MQ0=2;MQRankSum=0.757;QD=2.05;ReadPosRankSum=-0.339;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:74,17:91:99:215,0,2448
+chr1	46718	.	A	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;DP=81;Dels=0.00;FS=1.893;HaplotypeScore=14.9370;MLEAC=1;MLEAF=0.500;MQ=50.24;MQ0=2;MQRankSum=0.582;QD=12.37;ReadPosRankSum=1.963;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:47,34:81:99:1030,0,1456
+chr1	46719	.	A	C	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=14.9370;MLEAC=1;MLEAF=0.500;MQ=50.24;MQ0=2;MQRankSum=0.250;QD=3.16;ReadPosRankSum=-0.404;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:66,15:81:99:284,0,2191
+chr1	46726	.	T	C	2626.77	.	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.9384;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=2;QD=34.56;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,75:76:99:2655,202,0
+chr1	46731	.	T	C	2453.77	.	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=2;QD=34.08;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2482,193,0
+chr1	46759	.	C	A	1490.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=9.8664;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=2;QD=28.13;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1519,129,0
+chr1	46779	.	T	A	15.88	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=47;Dels=0.00;FS=2.615;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.41;MQ0=8;MQRankSum=-1.409;QD=0.34;ReadPosRankSum=-0.531;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:33,14:47:44:44,0,779
+chr1	46829	.	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=9;MQRankSum=-1.417;QD=3.18;ReadPosRankSum=-0.019;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,19:43:99:165,0,685
+chr1	46863	.	T	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=1;MLEAF=0.500;MQ=34.16;MQ0=4;MQRankSum=1.021;QD=3.19;ReadPosRankSum=-0.671;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,10:31:99:127,0,637
+chr1	46875	.	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.74;MQ0=4;MQRankSum=0.391;QD=7.75;ReadPosRankSum=0.746;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:16,9:25:99:222,0,386
+chr1	46877	.	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.74;MQ0=4;MQRankSum=-0.391;QD=7.71;ReadPosRankSum=0.675;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:16,9:25:99:221,0,382
+chr1	46911	.	T	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.99;MQ0=4;MQRankSum=-0.295;QD=11.88;ReadPosRankSum=1.120;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:6,13:19:99:254,0,170
+chr1	46912	.	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.99;MQ0=4;MQRankSum=-0.059;QD=7.36;ReadPosRankSum=-1.237;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:13,6:19:99:168,0,256
+chr1	46921	.	A	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.9988;MLEAC=1;MLEAF=0.500;MQ=31.99;MQ0=4;MQRankSum=1.120;QD=6.94;ReadPosRankSum=-1.237;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:13,6:19:99:160,0,232
+chr1	46929	.	T	C	21.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.9987;MLEAC=1;MLEAF=0.500;MQ=30.25;MQ0=4;MQRankSum=1.826;QD=1.36;ReadPosRankSum=-1.396;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:14,2:16:50:50,0,263
+chr1	46930	.	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=29.49;MQ0=4;MQRankSum=0.382;QD=2.05;ReadPosRankSum=-0.382;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:12,3:15:59:59,0,224
+chr1	46932	.	T	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=29.49;MQ0=4;MQRankSum=-0.278;QD=10.05;ReadPosRankSum=0.597;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:4,11:15:99:179,0,100
+chr1	47124	.	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=6.6461;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=5;MQRankSum=2.616;QD=3.49;ReadPosRankSum=-0.713;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,5:30:99:133,0,417
+chr1	47130	.	C	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=6.6461;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=5;MQRankSum=-0.972;QD=3.54;ReadPosRankSum=-0.417;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,8:31:99:138,0,432
+chr1	47133	.	A	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=15.5825;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=5;MQRankSum=2.905;QD=5.37;ReadPosRankSum=-1.743;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,7:32:99:200,0,418
+chr1	47143	.	G	A	25.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=1;MLEAF=0.500;MQ=29.14;MQ0=5;MQRankSum=1.890;QD=0.78;ReadPosRankSum=1.736;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,3:33:54:54,0,575
+chr1	47144	.	A	G	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9886;MLEAC=1;MLEAF=0.500;MQ=29.14;MQ0=5;MQRankSum=1.440;QD=17.39;ReadPosRankSum=-0.420;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:7,26:33:45:602,0,45
+chr1	47176	.	T	C	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=14.0311;MLEAC=1;MLEAF=0.500;MQ=29.24;MQ0=6;MQRankSum=-3.114;QD=8.56;ReadPosRankSum=-0.467;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:12,20:32:99:302,0,299
+chr1	47177	.	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=14.0311;MLEAC=1;MLEAF=0.500;MQ=29.47;MQ0=6;MQRankSum=0.027;QD=6.93;ReadPosRankSum=0.356;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,11:31:99:243,0,342
+chr1	47200	.	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.35;MQ0=1;MQRankSum=0.312;QD=7.13;ReadPosRankSum=1.954;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:7,7:14:99:128,0,187
+chr1	47230	.	T	A	178.8	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=19.08;MQ0=3;QD=9.93;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,18:18:21:207,21,0
+chr1	47234	.	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.58;MQ0=3;MQRankSum=-1.721;QD=2.61;ReadPosRankSum=1.721;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:8,13:21:83:83,0,132
+chr1	47250	.	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.640;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7510;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=5;MQRankSum=-1.456;QD=2.27;ReadPosRankSum=0.646;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:44,22:66:99:178,0,749
+chr1	47261	.	A	G	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.7299;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=5;MQRankSum=-5.094;QD=13.44;ReadPosRankSum=1.015;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:13,92:105:99:1439,0,288
+chr1	47285	.	A	T	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;DP=169;Dels=0.00;FS=25.466;HaplotypeScore=47.9098;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=7;MQRankSum=-4.336;QD=4.42;ReadPosRankSum=3.540;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:101,68:169:99:776,0,2136
+chr1	47298	.	G	A	12.99	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;DP=190;Dels=0.00;FS=15.234;HaplotypeScore=62.4649;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=9;MQRankSum=0.954;QD=0.07;ReadPosRankSum=-0.318;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:171,18:190:41:41,0,3305
+chr1	47310	.	A	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=49.7328;MLEAC=1;MLEAF=0.500;MQ=25.09;MQ0=7;MQRankSum=4.634;QD=2.37;ReadPosRankSum=0.186;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:176,29:205:99:514,0,2996
+chr1	47323	.	G	A	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;DP=211;Dels=0.00;FS=17.070;HaplotypeScore=51.7365;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=8;MQRankSum=-0.372;QD=4.96;ReadPosRankSum=0.233;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:139,72:211:99:1074,0,2488
+chr1	47338	.	C	T	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;DP=186;Dels=0.02;FS=12.473;HaplotypeScore=79.8806;MLEAC=1;MLEAF=0.500;MQ=25.59;MQ0=8;MQRankSum=-2.645;QD=5.05;ReadPosRankSum=-1.238;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:110,73:183:99:967,0,2144
+chr1	47343	.	A	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;DP=175;Dels=0.00;FS=24.414;HaplotypeScore=63.4079;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=8;MQRankSum=-4.741;QD=1.42;ReadPosRankSum=-2.918;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:123,52:175:99:276,0,2689
+chr1	47371	.	T	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;DP=89;Dels=0.00;FS=1.351;HaplotypeScore=13.6568;MLEAC=1;MLEAF=0.500;MQ=24.59;MQ0=7;MQRankSum=-0.275;QD=11.91;ReadPosRankSum=-0.593;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:19,70:89:99:1088,0,261
+chr1	47393	.	G	A	15.88	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DP=52;Dels=0.00;FS=11.083;HaplotypeScore=2.6277;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=6;MQRankSum=-1.494;QD=0.31;ReadPosRankSum=1.210;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:41,11:52:44:44,0,511
+chr1	47428	.	T	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;DP=69;Dels=0.00;FS=2.933;HaplotypeScore=8.8333;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=5;MQRankSum=3.350;QD=4.91;ReadPosRankSum=0.000;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:47,22:69:99:367,0,707
+chr1	47434	.	T	C	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.090;DP=72;Dels=0.00;FS=5.763;HaplotypeScore=21.1457;MLEAC=1;MLEAF=0.500;MQ=23.17;MQ0=5;MQRankSum=-4.249;QD=10.91;ReadPosRankSum=1.041;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:15,57:72:99:814,0,307
+chr1	47443	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=18.3434;MLEAC=1;MLEAF=0.500;MQ=20.97;MQ0=15;MQRankSum=-0.420;QD=0.53;ReadPosRankSum=1.565;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:81,18:99:81:81,0,1206
+chr1	47486	.	T	C	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.037;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.8061;MLEAC=1;MLEAF=0.500;MQ=22.09;MQ0=28;MQRankSum=-5.676;QD=9.38;ReadPosRankSum=1.987;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:36,119:155:99:1482,0,780
+chr1	47491	.	T	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=17.2378;MLEAC=1;MLEAF=0.500;MQ=22.27;MQ0=26;MQRankSum=5.308;QD=3.06;ReadPosRankSum=-1.409;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:133,23:156:99:506,0,1813
+chr1	47535	.	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=38.1338;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=22;MQRankSum=2.066;QD=3.23;ReadPosRankSum=1.772;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:73,16:91:99:329,0,900
+chr1	47567	.	G	A	567.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.580;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.7649;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=4;MQRankSum=0.223;QD=17.74;ReadPosRankSum=-1.561;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:6,26:32:31:596,31,0
+chr1	47584	.	T	C	27.75	LowQual	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.33;MQ0=4;QD=4.62;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:4,2:6:6:55,6,0
+chr1	47788	.	G	A	57.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.71;MQ0=14;MQRankSum=1.537;QD=2.86;ReadPosRankSum=0.406;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:17,3:20:9:85,9,0
+chr1	47807	.	T	C	18.82	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.86;MQ0=12;MQRankSum=-1.709;QD=0.70;ReadPosRankSum=-2.534;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:9,18:27:47:47,0,128
+chr1	47841	.	C	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=15.69;MQ0=10;MQRankSum=0.024;QD=2.26;ReadPosRankSum=0.315;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,15:38:99:114,0,159
+chr1	47868	.	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=14.6837;MLEAC=1;MLEAF=0.500;MQ=16.29;MQ0=5;MQRankSum=0.408;QD=1.05;ReadPosRankSum=0.168;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,10:33:63:63,0,165
+chr1	47905	.	T	C	76.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=14.10;MQ0=0;MQRankSum=-0.919;QD=4.47;ReadPosRankSum=1.531;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:1,16:17:12:104,12,0
+chr1	47908	.	G	C	76.03	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.35;MQ0=0;QD=5.07;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,15:15:12:104,12,0
+chr1	48010	.	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=9.5644;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=4;MQRankSum=1.490;QD=1.24;ReadPosRankSum=1.149;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,5:32:68:68,0,115
+chr1	48044	.	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=15.75;MQ0=6;MQRankSum=0.905;QD=2.20;ReadPosRankSum=1.323;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:22,12:34:99:103,0,101
+chr1	48062	.	T	C	149.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.286;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=16.25;MQ0=3;MQRankSum=1.884;QD=5.99;ReadPosRankSum=0.171;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:4,21:25:18:178,18,0
+chr1	48067	.	T	C	24.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.500;MQ=16.25;MQ0=3;MQRankSum=-0.560;QD=0.99;ReadPosRankSum=-0.033;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:14,11:25:53:53,0,86
+chr1	48077	.	G	A	10.33	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=11.66;MQ0=2;MQRankSum=0.000;QD=0.65;ReadPosRankSum=1.067;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:11,5:16:15:38,0,15
+chr1	48103	.	C	T	10.33	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=13.51;MQ0=0;MQRankSum=0.000;QD=1.03;ReadPosRankSum=1.447;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:6,4:10:15:38,0,15
+chr1	69651	.	C	A	54.28	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.77;MQ0=1;QD=6.79;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,8:8:9:82,9,0
+chr1	69661	.	T	C	54.28	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.92;MQ0=2;QD=6.03;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,9:9:9:82,9,0
+chr1	69674	.	T	C	54.28	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.92;MQ0=2;QD=6.03;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,9:9:9:82,9,0
+chr1	69693	.	C	G	54.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.15;MQ0=2;MQRankSum=0.747;QD=5.43;ReadPosRankSum=0.747;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:1,9:10:9:82,9,0
+chr1	69699	.	C	T	41.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.03;MQ0=2;MQRankSum=-0.762;QD=3.81;ReadPosRankSum=1.666;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:2,9:11:15:70,0,15
+chr1	69764	.	A	G	449.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;DP=37;Dels=0.00;FS=9.031;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=23.29;MQ0=17;MQRankSum=2.126;QD=12.15;ReadPosRankSum=0.047;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,16:37:7:477,0,7
+chr1	69840	.	G	A	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.6917;MLEAC=1;MLEAF=0.500;MQ=29.33;MQ0=7;MQRankSum=-2.507;QD=16.16;ReadPosRankSum=0.039;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:3,31:36:55:610,0,55
+chr1	69869	.	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.44;MQ0=9;MQRankSum=-2.380;QD=0.76;ReadPosRankSum=1.273;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:35,11:46:63:63,0,767
+chr1	69912	.	A	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;DP=89;Dels=0.00;FS=2.410;HaplotypeScore=43.2151;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=20;MQRankSum=-2.202;QD=0.85;ReadPosRankSum=-1.327;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:71,18:89:99:104,0,1176
+chr1	69914	.	T	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;DP=89;Dels=0.00;FS=2.466;HaplotypeScore=31.1187;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=20;MQRankSum=-2.123;QD=0.55;ReadPosRankSum=-0.877;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:74,15:89:77:77,0,1075
+chr1	69917	.	A	G	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;DP=93;Dels=0.00;FS=4.107;HaplotypeScore=21.6983;MLEAC=1;MLEAF=0.500;MQ=28.07;MQ0=21;MQRankSum=6.024;QD=8.30;ReadPosRankSum=3.447;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:60,33:93:99:800,0,323
+chr1	69936	.	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;DP=99;Dels=0.00;FS=7.704;HaplotypeScore=13.1641;MLEAC=1;MLEAF=0.500;MQ=29.72;MQ0=22;MQRankSum=-2.828;QD=0.58;ReadPosRankSum=-0.226;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:74,24:99:86:86,0,1391
+chr1	69952	.	G	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DP=98;Dels=0.00;FS=10.410;HaplotypeScore=7.2476;MLEAC=1;MLEAF=0.500;MQ=31.15;MQ0=22;MQRankSum=-3.094;QD=1.13;ReadPosRankSum=1.550;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:74,23:98:99:139,0,1447
+chr1	70044	.	T	C	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.831;DP=64;Dels=0.00;FS=17.302;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=39.43;MQ0=5;MQRankSum=-6.056;QD=6.00;ReadPosRankSum=-3.773;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:35,29:64:99:412,0,1246
+chr1	70061	.	A	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;DP=133;Dels=0.00;FS=7.265;HaplotypeScore=20.7708;MLEAC=1;MLEAF=0.500;MQ=36.02;MQ0=7;MQRankSum=-0.379;QD=2.95;ReadPosRankSum=-1.067;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:108,25:133:99:420,0,2776
+chr1	70083	.	T	A	2582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=229;Dels=0.00;FS=16.594;HaplotypeScore=75.2516;MLEAC=1;MLEAF=0.500;MQ=35.83;MQ0=10;MQRankSum=-6.665;QD=11.28;ReadPosRankSum=-0.109;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:50,97:229:99:2611,0,1502
+chr1	70125	.	G	T	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;DP=250;Dels=0.00;FS=22.446;HaplotypeScore=27.9709;MLEAC=1;MLEAF=0.500;MQ=34.24;MQ0=12;MQRankSum=6.009;QD=2.97;ReadPosRankSum=-1.398;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:216,34:250:99:771,0,5278
+chr1	70150	.	A	T	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=239;Dels=0.00;FS=21.127;HaplotypeScore=368.1172;MLEAC=1;MLEAF=0.500;MQ=33.77;MQ0=11;MQRankSum=1.765;QD=9.26;ReadPosRankSum=0.325;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:156,83:239:99:2242,0,3406
+chr1	70216	.	A	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DP=108;Dels=0.00;FS=9.502;HaplotypeScore=1.7297;MLEAC=1;MLEAF=0.500;MQ=29.27;MQ0=14;MQRankSum=-0.174;QD=5.67;ReadPosRankSum=-0.831;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:70,38:108:99:641,0,1179
+chr1	70250	.	G	A	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;DP=135;Dels=0.00;FS=13.533;HaplotypeScore=55.9122;MLEAC=1;MLEAF=0.500;MQ=30.56;MQ0=13;MQRankSum=-4.770;QD=12.90;ReadPosRankSum=-1.687;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,110:135:99:1770,0,694
+chr1	70260	.	T	A	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DP=159;Dels=0.00;FS=11.693;HaplotypeScore=60.0297;MLEAC=1;MLEAF=0.500;MQ=32.41;MQ0=12;MQRankSum=3.229;QD=9.40;ReadPosRankSum=-1.725;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:97,62:159:99:1523,0,1679
+chr1	70302	.	G	C	22.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=38.7004;MLEAC=1;MLEAF=0.500;MQ=30.81;MQ0=27;MQRankSum=2.779;QD=0.09;ReadPosRankSum=-0.062;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:234,14:250:51:51,0,4942
+chr1	70324	.	G	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=72.4821;MLEAC=1;MLEAF=0.500;MQ=30.43;MQ0=36;MQRankSum=-1.206;QD=1.62;ReadPosRankSum=-0.310;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:212,38:250:99:433,0,4781
+chr1	70330	.	T	C	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.778;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=72.4821;MLEAC=1;MLEAF=0.500;MQ=29.87;MQ0=39;MQRankSum=4.681;QD=4.35;ReadPosRankSum=0.440;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:201,45:247:99:1102,0,3835
+chr1	70352	.	C	T	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;DP=231;Dels=0.00;FS=0.000;HaplotypeScore=38.6164;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=43;MQRankSum=-0.256;QD=4.09;ReadPosRankSum=1.173;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:164,67:231:99:973,0,3380
+chr1	70354	.	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=36.7869;MLEAC=1;MLEAF=0.500;MQ=28.93;MQ0=43;MQRankSum=0.019;QD=2.38;ReadPosRankSum=1.450;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:181,47:228:99:571,0,3676
+chr1	70360	.	A	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=31.5616;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=42;MQRankSum=0.615;QD=3.26;ReadPosRankSum=0.618;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:163,51:214:99:725,0,3164
+chr1	70400	.	A	G	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.22;MQ0=0;MQRankSum=-1.795;QD=15.51;ReadPosRankSum=0.535;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:9,14:23:99:385,0,241
+chr1	70409	.	T	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.14;MQ0=0;MQRankSum=-2.381;QD=13.95;ReadPosRankSum=0.958;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:11,14:25:99:377,0,326
+chr1	70454	.	T	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DP=38;Dels=0.00;FS=4.521;HaplotypeScore=2.5142;MLEAC=1;MLEAF=0.500;MQ=46.06;MQ0=0;MQRankSum=-4.169;QD=10.55;ReadPosRankSum=0.264;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,17:38:99:429,0,678
+chr1	70455	.	G	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;DP=38;Dels=0.00;FS=2.884;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=46.06;MQ0=0;MQRankSum=4.198;QD=16.99;ReadPosRankSum=-0.382;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:17,21:38:99:674,0,427
+chr1	70467	.	G	A	1182.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=33.79;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1211,99,0
+chr1	70476	.	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;DP=28;Dels=0.00;FS=1.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.00;MQ0=0;MQRankSum=-4.339;QD=6.71;ReadPosRankSum=-2.613;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:18,10:28:99:216,0,597
+chr1	70481	.	T	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;DP=29;Dels=0.00;FS=3.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.39;MQ0=0;MQRankSum=-4.266;QD=5.23;ReadPosRankSum=-2.051;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,9:29:99:180,0,720
+chr1	70487	.	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;DP=31;Dels=0.00;FS=7.186;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.09;MQ0=0;MQRankSum=-3.992;QD=3.25;ReadPosRankSum=-0.685;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,7:31:99:129,0,866
+chr1	70488	.	G	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DP=30;Dels=0.00;FS=12.454;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.88;MQ0=0;MQRankSum=-3.759;QD=3.33;ReadPosRankSum=-0.026;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,6:30:99:128,0,824
+chr1	70508	.	A	G	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;DP=31;Dels=0.00;FS=8.915;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.10;MQ0=0;MQRankSum=3.902;QD=21.83;ReadPosRankSum=2.250;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:11,20:31:99:705,0,304
+chr1	70513	.	T	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;DP=29;Dels=0.00;FS=6.306;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=52.84;MQ0=0;MQRankSum=-3.512;QD=7.10;ReadPosRankSum=-0.966;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,9:29:99:234,0,716
+chr1	70534	.	A	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.15;MQ0=0;MQRankSum=4.082;QD=15.43;ReadPosRankSum=1.082;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,20:41:99:661,0,570
+chr1	70544	.	T	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.74;MQ0=0;MQRankSum=-3.969;QD=13.14;ReadPosRankSum=0.202;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,24:47:99:646,0,706
+chr1	70546	.	C	G	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=0;MQRankSum=-3.859;QD=14.29;ReadPosRankSum=0.413;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,25:48:99:714,0,704
+chr1	70565	.	A	G	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;DP=52;Dels=0.00;FS=5.964;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.21;MQ0=0;MQRankSum=-2.949;QD=14.94;ReadPosRankSum=2.436;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,27:52:99:805,0,789
+chr1	70576	.	T	C	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;DP=58;Dels=0.00;FS=5.843;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=48.49;MQ0=0;MQRankSum=-3.297;QD=14.46;ReadPosRankSum=2.442;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,29:58:99:867,0,930
+chr1	70628	.	T	G	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;DP=62;Dels=0.00;FS=3.540;HaplotypeScore=4.7315;MLEAC=1;MLEAF=0.500;MQ=52.03;MQ0=0;MQRankSum=-0.331;QD=16.09;ReadPosRankSum=0.416;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:30,32:62:99:1026,0,961
+chr1	70637	.	G	A	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;DP=57;Dels=0.00;FS=1.010;HaplotypeScore=4.7315;MLEAC=1;MLEAF=0.500;MQ=53.93;MQ0=0;MQRankSum=0.813;QD=17.19;ReadPosRankSum=-0.748;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:26,30:57:99:1008,0,828
+chr1	70655	.	A	G	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;DP=53;Dels=0.00;FS=1.090;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=56.13;MQ0=0;MQRankSum=-0.769;QD=16.79;ReadPosRankSum=-2.051;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,27:53:99:918,0,834
+chr1	70662	.	T	G	2101.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=34.63;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2130,160,0
+chr1	70684	.	C	T	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DP=57;Dels=0.00;FS=3.772;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=57.81;MQ0=1;MQRankSum=1.273;QD=17.59;ReadPosRankSum=-0.173;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:26,31:57:99:1031,0,872
+chr1	70716	.	A	G	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=1;MQRankSum=-0.680;QD=16.01;ReadPosRankSum=-0.621;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,32:61:99:1005,0,945
+chr1	70722	.	G	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DP=64;Dels=0.00;FS=0.968;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.90;MQ0=1;MQRankSum=-0.310;QD=14.48;ReadPosRankSum=0.901;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:34,30:64:99:955,0,1044
+chr1	70732	.	T	G	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=1;MQRankSum=0.419;QD=16.25;ReadPosRankSum=0.186;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:32,32:64:99:1068,0,1033
+chr1	70757	.	A	G	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;DP=57;Dels=0.00;FS=2.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=2;MQRankSum=0.704;QD=17.61;ReadPosRankSum=-0.908;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,33:57:99:1032,0,802
+chr1	70801	.	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=1;QD=31.86;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1350,102,0
+chr1	70805	.	T	C	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=1;MQRankSum=-0.638;QD=11.39;ReadPosRankSum=3.331;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,14:35:99:427,0,704
+chr1	70806	.	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=1;MQRankSum=-0.632;QD=11.19;ReadPosRankSum=3.192;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:22,14:36:99:431,0,755
+chr1	70808	.	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=1;MQRankSum=-0.461;QD=11.99;ReadPosRankSum=2.671;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,14:34:99:436,0,682
+chr1	70814	.	A	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=1;MQRankSum=-0.281;QD=14.22;ReadPosRankSum=1.333;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:654,0,779
+chr1	70860	.	G	C	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-0.732;QD=15.72;ReadPosRankSum=-0.025;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:27,28:55:99:893,0,931
+chr1	70872	.	A	T	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-0.806;QD=14.49;ReadPosRankSum=-0.247;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,28:57:99:854,0,1019
+chr1	70927	.	T	A	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;DP=54;Dels=0.00;FS=2.239;HaplotypeScore=28.8784;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=0.885;QD=15.03;ReadPosRankSum=0.833;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,25:54:99:840,0,984
+chr1	70928	.	C	T	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;DP=54;Dels=0.00;FS=2.239;HaplotypeScore=28.8784;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.173;QD=14.92;ReadPosRankSum=0.642;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,25:54:99:834,0,975
+chr1	70958	.	G	A	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;DP=57;Dels=0.00;FS=1.019;HaplotypeScore=3.9961;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=-0.008;QD=15.52;ReadPosRankSum=-0.855;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:30,27:57:99:913,0,1033
+chr1	70978	.	A	C	1879.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.75;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1908,144,0
+chr1	71024	.	T	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.209;QD=10.97;ReadPosRankSum=0.418;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,15:38:99:445,0,742
+chr1	71043	.	A	G	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;DP=38;Dels=0.00;FS=1.271;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-0.530;QD=10.86;ReadPosRankSum=-0.257;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,14:38:99:441,0,841
+chr1	71062	.	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;DP=39;Dels=0.00;FS=9.774;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.61;MQ0=0;MQRankSum=-1.775;QD=10.92;ReadPosRankSum=-1.342;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,15:39:99:454,0,819
+chr1	71078	.	A	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;DP=46;Dels=0.00;FS=9.879;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.14;MQ0=0;MQRankSum=-2.684;QD=7.15;ReadPosRankSum=1.952;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:33,13:46:99:357,0,1152
+chr1	71081	.	T	G	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DP=45;Dels=0.00;FS=9.686;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-2.992;QD=7.59;ReadPosRankSum=1.991;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:32,13:45:99:370,0,1120
+chr1	71151	.	T	C	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DP=48;Dels=0.00;FS=6.211;HaplotypeScore=1.7172;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-0.755;QD=14.79;ReadPosRankSum=0.962;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:26,22:48:99:738,0,906
+chr1	71164	.	T	G	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DP=52;Dels=0.00;FS=5.816;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.829;QD=13.75;ReadPosRankSum=2.635;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,23:52:99:743,0,987
+chr1	71175	.	C	T	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;DP=49;Dels=0.00;FS=8.135;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-0.410;QD=15.79;ReadPosRankSum=2.570;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,24:49:99:802,0,806
+chr1	71183	.	G	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;DP=50;Dels=0.00;FS=5.868;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-0.740;QD=13.42;ReadPosRankSum=3.290;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:27,23:50:99:699,0,927
+chr1	71188	.	T	C	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DP=50;Dels=0.00;FS=4.061;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-1.246;QD=13.50;ReadPosRankSum=2.647;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:27,23:50:99:703,0,954
+chr1	71222	.	A	C	1672.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.6203;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=26.79;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1701,129,0
+chr1	71229	.	C	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-1.588;QD=9.33;ReadPosRankSum=-2.495;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:28,14:42:99:420,0,1008
+chr1	71244	.	A	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-2.527;QD=4.99;ReadPosRankSum=-1.716;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,8:37:99:213,0,1037
+chr1	71245	.	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-3.757;QD=4.10;ReadPosRankSum=-1.239;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:29,7:36:99:176,0,1059
+chr1	71254	.	G	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-3.568;QD=1.91;ReadPosRankSum=-0.412;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:31,5:36:97:97,0,1070
+chr1	71258	.	C	T	1176.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=34.61;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1205,99,0
+chr1	71280	.	T	C	924.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.47;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,26:26:75:953,75,0
+chr1	71284	.	T	C	956.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.19;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,26:26:78:985,78,0
+chr1	71319	.	G	A	770.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.29;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:63:799,63,0
+chr1	71344	.	G	C	750.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.92;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:779,60,0
+chr1	71359	.	G	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;DP=32;Dels=0.00;FS=18.730;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=54.56;MQ0=0;MQRankSum=-4.690;QD=8.59;ReadPosRankSum=-1.888;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,12:32:99:303,0,699
+chr1	71365	.	A	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DP=30;Dels=0.00;FS=15.204;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.18;MQ0=0;MQRankSum=-4.593;QD=9.83;ReadPosRankSum=-1.037;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:18,12:30:99:323,0,626
+chr1	71371	.	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=34;Dels=0.00;FS=14.526;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=-4.775;QD=8.11;ReadPosRankSum=0.414;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,12:34:99:304,0,729
+chr1	71381	.	C	T	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;DP=32;Dels=0.00;FS=11.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.56;MQ0=0;MQRankSum=-4.690;QD=9.18;ReadPosRankSum=2.316;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,12:32:99:322,0,668
+chr1	71388	.	T	C	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=35;Dels=0.00;FS=18.303;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=0;MQRankSum=-4.813;QD=8.08;ReadPosRankSum=3.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,12:35:99:311,0,784
+chr1	71570	.	G	A	897.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.40;MQ0=0;QD=31.63;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:926,69,0
+chr1	71608	.	A	G	632.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.26;MQ0=0;QD=28.72;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:661,51,0
+chr1	71631	.	G	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.385;DP=24;Dels=0.00;FS=16.510;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=-4.055;QD=11.37;ReadPosRankSum=-2.981;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:15,9:24:99:301,0,519
+chr1	71646	.	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.949;DP=21;Dels=0.00;FS=9.840;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.31;MQ0=0;MQRankSum=-3.873;QD=13.42;ReadPosRankSum=-0.675;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:12,9:21:99:310,0,392
+chr1	71649	.	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;DP=20;Dels=0.00;FS=10.263;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.18;MQ0=0;MQRankSum=-3.799;QD=14.19;ReadPosRankSum=-0.380;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:11,9:20:99:312,0,385
+chr1	71668	.	T	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;DP=22;Dels=0.00;FS=9.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=-3.575;QD=6.94;ReadPosRankSum=2.617;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,6:22:99:181,0,541
+chr1	71670	.	C	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;DP=21;Dels=0.00;FS=12.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=-3.542;QD=7.42;ReadPosRankSum=2.997;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:15,6:21:99:184,0,526
+chr1	71673	.	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DP=22;Dels=0.00;FS=9.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=-3.575;QD=6.72;ReadPosRankSum=3.502;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,6:22:99:176,0,563
+chr1	71675	.	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=22;Dels=0.00;FS=9.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=-3.575;QD=6.63;ReadPosRankSum=3.502;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,6:22:99:174,0,568
+chr1	71676	.	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;DP=23;Dels=0.00;FS=12.352;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=-3.606;QD=5.99;ReadPosRankSum=3.536;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:17,6:23:99:166,0,592
+chr1	71693	.	T	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;DP=27;Dels=0.00;FS=8.671;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=0;MQRankSum=-3.703;QD=4.03;ReadPosRankSum=1.895;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,6:27:99:137,0,745
+chr1	71715	.	A	T	618.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=27.35;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:48:647,48,0
+chr1	71716	.	A	T	611.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=32.79;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:48:640,48,0
+chr1	71717	.	A	T	625.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=35.67;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:48:654,48,0
+chr1	71718	.	A	T	704.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=28.78;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:54:733,54,0
+chr1	71734	.	G	A	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=49;Dels=0.00;FS=6.300;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=1;MQRankSum=2.206;QD=19.40;ReadPosRankSum=2.478;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,28:49:99:979,0,585
+chr1	71751	.	T	C	1954.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=1;QD=30.41;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1983,147,0
+chr1	71752	.	T	C	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;DP=52;Dels=0.00;FS=8.561;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.88;MQ0=1;MQRankSum=-0.751;QD=11.90;ReadPosRankSum=0.903;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,23:52:99:647,0,1034
+chr1	71768	.	T	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;DP=50;Dels=0.00;FS=6.439;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=1;MQRankSum=0.630;QD=13.48;ReadPosRankSum=1.070;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:24,26:50:99:702,0,834
+chr1	71769	.	T	C	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;DP=48;Dels=0.00;FS=6.329;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=-0.010;QD=13.47;ReadPosRankSum=1.206;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:24,24:48:99:675,0,839
+chr1	71772	.	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9984;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=30.14;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1801,135,0
+chr1	71809	.	A	C	2024.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=1;QD=30.00;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2053,153,0
+chr1	71829	.	C	A	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DP=56;Dels=0.00;FS=2.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=1;MQRankSum=0.563;QD=19.05;ReadPosRankSum=-0.442;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,35:56:99:1095,0,684
+chr1	71834	.	T	C	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DP=51;Dels=0.00;FS=2.568;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=1;MQRankSum=0.212;QD=20.49;ReadPosRankSum=-0.758;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:18,33:51:99:1073,0,570
+chr1	71853	.	T	C	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=55.00;MQ0=1;MQRankSum=-0.422;QD=19.24;ReadPosRankSum=0.084;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:19,30:49:99:971,0,612
+chr1	71859	.	G	A	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;DP=49;Dels=0.00;FS=1.079;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=54.43;MQ0=1;MQRankSum=-1.148;QD=16.89;ReadPosRankSum=1.542;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:856,0,696
+chr1	71860	.	A	T	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.606;DP=48;Dels=0.00;FS=1.133;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.500;MQ=54.31;MQ0=1;MQRankSum=-0.374;QD=17.77;ReadPosRankSum=1.423;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,27:48:99:881,0,668
+chr1	71878	.	T	C	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.614;DP=44;Dels=0.00;FS=2.696;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=1;MQRankSum=-1.741;QD=16.99;ReadPosRankSum=1.619;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,24:44:99:776,0,611
+chr1	71879	.	G	T	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.817;DP=45;Dels=0.00;FS=2.750;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=52.60;MQ0=1;MQRankSum=-1.880;QD=16.79;ReadPosRankSum=1.786;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,24:45:99:784,0,584
+chr1	71900	.	G	A	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;DP=39;Dels=0.00;FS=6.884;HaplotypeScore=26.2859;MLEAC=1;MLEAF=0.500;MQ=50.73;MQ0=0;MQRankSum=0.829;QD=13.97;ReadPosRankSum=-0.126;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:19,20:39:99:573,0,657
+chr1	71921	.	G	C	513.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=27.04;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:42:542,42,0
+chr1	71950	.	T	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;DP=28;Dels=0.00;FS=21.924;HaplotypeScore=4.3987;MLEAC=1;MLEAF=0.500;MQ=32.58;MQ0=2;MQRankSum=-0.462;QD=3.24;ReadPosRankSum=-1.272;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,7:28:99:119,0,331
+chr1	71973	.	C	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.0534;MLEAC=1;MLEAF=0.500;MQ=13.29;MQ0=15;MQRankSum=2.752;QD=1.90;ReadPosRankSum=3.058;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:54,7:61:75:144,0,75
+chr1	71995	.	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=22.9908;MLEAC=1;MLEAF=0.500;MQ=14.13;MQ0=18;MQRankSum=2.453;QD=1.44;ReadPosRankSum=3.369;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:66,8:74:99:135,0,173
+chr1	72037	.	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.0800;MLEAC=1;MLEAF=0.500;MQ=11.16;MQ0=17;MQRankSum=2.289;QD=0.63;ReadPosRankSum=2.020;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:61,2:63:68:68,0,74
+chr1	72059	.	T	C	106.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.241;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7351;MLEAC=2;MLEAF=1.00;MQ=11.90;MQ0=9;MQRankSum=1.061;QD=2.65;ReadPosRankSum=-2.054;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:9,31:40:12:134,12,0
+chr1	72137	.	C	T	135.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.983;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.91;MQ0=6;MQRankSum=3.138;QD=5.63;ReadPosRankSum=0.702;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:16,7:24:12:163,12,0
+chr1	72198	.	A	G	26.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.408;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=32.2822;MLEAC=1;MLEAF=0.500;MQ=18.40;MQ0=8;MQRankSum=0.642;QD=0.79;ReadPosRankSum=-0.803;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:30,3:33:55:55,0,194
+chr1	72220	.	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=8.1644;MLEAC=1;MLEAF=0.500;MQ=16.77;MQ0=8;MQRankSum=2.009;QD=1.02;ReadPosRankSum=2.679;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:27,3:33:62:62,0,141
+chr1	72245	.	G	A	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.7817;MLEAC=1;MLEAF=0.500;MQ=17.26;MQ0=4;MQRankSum=1.052;QD=0.99;ReadPosRankSum=-1.148;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,3:30:58:58,0,156
+chr1	72246	.	G	T	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.7817;MLEAC=1;MLEAF=0.500;MQ=17.26;MQ0=4;MQRankSum=2.261;QD=0.99;ReadPosRankSum=-0.625;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,2:30:58:58,0,154
+chr1	72269	.	T	C	18.83	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DP=23;Dels=0.00;FS=4.771;HaplotypeScore=5.5051;MLEAC=1;MLEAF=0.500;MQ=11.28;MQ0=6;MQRankSum=-0.537;QD=0.82;ReadPosRankSum=2.293;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,7:23:39:47,0,39
+chr1	72271	.	T	C	11.12	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=22;Dels=0.00;FS=4.771;HaplotypeScore=4.7711;MLEAC=1;MLEAF=0.500;MQ=11.53;MQ0=6;MQRankSum=1.799;QD=0.51;ReadPosRankSum=-1.905;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:11,10:22:39:39,0,47
+chr1	72309	.	T	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=9.6153;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=3;MQRankSum=2.041;QD=2.45;ReadPosRankSum=-0.107;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:13,2:15:65:65,0,114
+chr1	72313	.	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=12.8714;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=3;MQRankSum=-1.000;QD=4.38;ReadPosRankSum=2.793;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:6,9:15:86:94,0,86
+chr1	72362	.	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=4;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.365;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:8,6:14:61:84,0,61
+chr1	72457	.	T	G	12.99	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DP=19;Dels=0.00;FS=3.979;HaplotypeScore=10.4309;MLEAC=1;MLEAF=0.500;MQ=16.41;MQ0=1;MQRankSum=-0.453;QD=0.68;ReadPosRankSum=2.174;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:11,8:19:41:41,0,92
+chr1	72490	.	A	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=17.81;MQ0=2;MQRankSum=2.538;QD=5.57;ReadPosRankSum=0.000;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:13,11:24:54:162,0,54
+chr1	72511	.	C	T	13.95	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;DP=23;Dels=0.00;FS=3.424;HaplotypeScore=8.8927;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=2;MQRankSum=2.216;QD=0.61;ReadPosRankSum=-2.336;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,2:23:42:42,0,231
+chr1	72546	.	G	A	13.95	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;DP=18;Dels=0.00;FS=3.010;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=22.48;MQ0=2;MQRankSum=2.143;QD=0.77;ReadPosRankSum=0.873;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,2:18:42:42,0,183
+chr1	72554	.	C	T	23.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=2;MQRankSum=2.073;QD=1.59;ReadPosRankSum=1.678;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:13,2:15:52:52,0,163
+chr1	72558	.	C	T	26.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=22.45;MQ0=2;MQRankSum=0.289;QD=1.91;ReadPosRankSum=1.599;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:10,4:14:55:55,0,130
+chr1	72562	.	G	A	26.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;DP=12;Dels=0.00;FS=8.751;HaplotypeScore=4.2846;MLEAC=1;MLEAF=0.500;MQ=22.65;MQ0=2;MQRankSum=1.271;QD=2.23;ReadPosRankSum=1.733;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:10,2:12:55:55,0,77
+chr1	72602	.	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;DP=19;Dels=0.00;FS=10.000;HaplotypeScore=6.4109;MLEAC=1;MLEAF=0.500;MQ=20.13;MQ0=4;MQRankSum=1.734;QD=1.88;ReadPosRankSum=-0.456;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,2:19:64:64,0,89
+chr1	72626	.	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;DP=23;Dels=0.00;FS=3.332;HaplotypeScore=8.3126;MLEAC=1;MLEAF=0.500;MQ=18.76;MQ0=5;MQRankSum=0.796;QD=2.34;ReadPosRankSum=0.515;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:17,6:23:82:82,0,124
+chr1	72630	.	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=11.7259;MLEAC=1;MLEAF=0.500;MQ=18.34;MQ0=5;MQRankSum=0.787;QD=1.32;ReadPosRankSum=-1.157;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:15,9:24:60:60,0,147
+chr1	72631	.	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.646;DP=25;Dels=0.00;FS=2.680;HaplotypeScore=11.7259;MLEAC=1;MLEAF=0.500;MQ=18.06;MQ0=5;MQRankSum=1.905;QD=2.15;ReadPosRankSum=0.106;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,3:25:82:82,0,124
+chr1	72638	.	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=22.7383;MLEAC=1;MLEAF=0.500;MQ=17.66;MQ0=5;MQRankSum=-0.417;QD=3.96;ReadPosRankSum=-0.775;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:12,17:29:95:143,0,95
+chr1	72646	.	G	A	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=9.5448;MLEAC=1;MLEAF=0.500;MQ=18.45;MQ0=5;MQRankSum=1.020;QD=0.60;ReadPosRankSum=1.080;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:24,9:33:48:48,0,249
+chr1	72647	.	A	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;DP=33;Dels=0.00;FS=2.141;HaplotypeScore=9.5448;MLEAC=1;MLEAF=0.500;MQ=18.45;MQ0=5;MQRankSum=-1.102;QD=2.24;ReadPosRankSum=-1.315;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:12,12:33:99:102,0,158
+chr1	72688	.	A	C	22.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=8.2417;MLEAC=1;MLEAF=0.500;MQ=17.84;MQ0=5;MQRankSum=0.604;QD=0.76;ReadPosRankSum=-0.986;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,9:30:51:51,0,209
+chr1	72693	.	A	G,T	93.3	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.315;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.4300;MLEAC=1,1;MLEAF=0.500,0.500;MQ=17.69;MQ0=3;MQRankSum=0.315;QD=4.06;ReadPosRankSum=0.693;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/2:3,13,7:23:82:195,82,86,97,0,107
+chr1	72717	.	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=16.28;MQ0=1;MQRankSum=0.555;QD=3.41;ReadPosRankSum=-0.660;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:7,7:14:32:76,0,32
+chr1	72825	.	G	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.6451;MLEAC=1;MLEAF=0.500;MQ=15.14;MQ0=20;MQRankSum=1.350;QD=1.40;ReadPosRankSum=1.050;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:33,4:39:83:83,0,118
+chr1	72829	.	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.6451;MLEAC=1;MLEAF=0.500;MQ=15.14;MQ0=20;MQRankSum=1.050;QD=1.40;ReadPosRankSum=1.550;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:35,4:39:83:83,0,121
+chr1	72855	.	A	G	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=16.6819;MLEAC=1;MLEAF=0.500;MQ=16.39;MQ0=10;MQRankSum=-0.705;QD=0.45;ReadPosRankSum=-1.464;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:12,14:27:40:40,0,130
+chr1	72858	.	G	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=11.8688;MLEAC=1;MLEAF=0.500;MQ=16.70;MQ0=9;MQRankSum=1.415;QD=2.30;ReadPosRankSum=0.283;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,4:26:82:88,0,82
+chr1	72865	.	G	A	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=9.3724;MLEAC=1;MLEAF=0.500;MQ=17.99;MQ0=8;MQRankSum=1.004;QD=0.55;ReadPosRankSum=0.091;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:19,3:22:40:40,0,130
+chr1	72880	.	C	T	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=5;MQRankSum=-0.546;QD=0.99;ReadPosRankSum=-1.214;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:8,7:15:43:43,0,103
+chr1	72889	.	T	A	11.83	LowQual	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.37;MQ0=0;QD=2.96;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,4:4:3:38,3,0
+chr1	73036	.	T	A	208.84	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=34.81;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
+chr1	73048	.	A	G	266.78	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=33.35;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,8:8:24:295,24,0
+chr1	73057	.	T	C	276.78	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=34.60;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,8:8:24:305,24,0
+chr1	73065	.	G	A	343.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=34.38;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:30:372,30,0
+chr1	73081	.	G	A	317.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=1;QD=28.89;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:27:346,27,0
+chr1	73149	.	G	C	249.8	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=31.03;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
+chr1	73163	.	A	G	322.78	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=26.87;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:27:351,27,0
+chr1	73175	.	G	C	322.78	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=27.27;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:27:351,27,0
+chr1	73190	.	T	C	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;DP=32;Dels=0.00;FS=5.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.22;MQ0=1;MQRankSum=-0.021;QD=8.71;ReadPosRankSum=4.416;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,10:32:99:307,0,753
+chr1	73232	.	T	G	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;DP=44;Dels=0.00;FS=1.263;HaplotypeScore=1.9988;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=0.025;QD=21.20;ReadPosRankSum=1.585;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:15,29:44:99:961,0,450
+chr1	73255	.	T	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;DP=47;Dels=0.00;FS=6.570;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-2.077;QD=9.48;ReadPosRankSum=-0.977;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:31,16:47:99:474,0,1089
+chr1	73261	.	C	A	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;DP=44;Dels=0.00;FS=4.722;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.183;QD=21.88;ReadPosRankSum=1.427;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,28:44:99:991,0,472
+chr1	73263	.	C	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=44;Dels=0.00;FS=2.932;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-1.964;QD=21.31;ReadPosRankSum=1.671;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,28:44:99:966,0,458
+chr1	73275	.	C	T	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;DP=44;Dels=0.00;FS=1.263;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-1.535;QD=22.72;ReadPosRankSum=0.693;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:15,29:44:99:1028,0,450
+chr1	73316	.	C	T	2034.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2063,157,0
+chr1	73353	.	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.881;QD=11.40;ReadPosRankSum=-2.375;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:31,18:49:99:587,0,1121
+chr1	73399	.	A	G	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DP=55;Dels=0.00;FS=1.104;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=2.735;QD=9.60;ReadPosRankSum=2.215;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:37,18:55:99:556,0,1319
+chr1	73405	.	A	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=0.482;QD=21.30;ReadPosRankSum=-0.975;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:19,30:49:99:1072,0,626
+chr1	73409	.	A	G	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=50;Dels=0.00;FS=1.111;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=-1.396;QD=19.28;ReadPosRankSum=-0.295;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,29:50:99:992,0,686
+chr1	73415	.	A	C	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;DP=46;Dels=0.00;FS=2.689;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=-0.221;QD=17.91;ReadPosRankSum=0.198;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,25:46:99:852,0,629
+chr1	73486	.	T	A	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.8288;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-0.472;QD=15.77;ReadPosRankSum=0.347;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,25:53:99:864,0,913
+chr1	73498	.	T	G	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;DP=60;Dels=0.00;FS=7.060;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-1.598;QD=16.43;ReadPosRankSum=-1.035;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,31:60:99:1014,0,976
+chr1	73526	.	G	C	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;DP=55;Dels=0.00;FS=5.479;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=0.947;QD=18.87;ReadPosRankSum=-1.408;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,32:55:99:1066,0,776
+chr1	73533	.	G	A	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.024;DP=53;Dels=0.00;FS=1.107;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=1.014;QD=17.51;ReadPosRankSum=0.458;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,30:53:99:956,0,715
+chr1	73553	.	C	T	2145.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7338;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.27;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2174,160,0
+chr1	73559	.	G	C	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.050;QD=12.94;ReadPosRankSum=-2.398;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:33,23:56:99:753,0,1151
+chr1	73601	.	T	C	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;DP=64;Dels=0.00;FS=0.969;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=0.995;QD=18.29;ReadPosRankSum=-0.142;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,36:64:99:1199,0,892
+chr1	73621	.	C	T	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;DP=67;Dels=0.00;FS=0.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=1.292;QD=18.98;ReadPosRankSum=-0.019;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:30,37:67:99:1300,0,965
+chr1	73648	.	A	G	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;DP=69;Dels=0.00;FS=2.001;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=-0.776;QD=13.56;ReadPosRankSum=0.391;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:37,32:69:99:964,0,1308
+chr1	73726	.	T	A	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=1.512;QD=18.38;ReadPosRankSum=1.487;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:18,24:42:99:800,0,577
+chr1	73823	.	G	C	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-0.311;QD=16.01;ReadPosRankSum=1.450;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:27,26:53:99:877,0,914
+chr1	73849	.	G	A	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DP=62;Dels=0.00;FS=1.017;HaplotypeScore=3.9989;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=-0.015;QD=21.00;ReadPosRankSum=-0.146;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,39:62:99:1330,0,730
+chr1	73870	.	G	A	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;DP=62;Dels=0.00;FS=3.539;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=0.230;QD=20.11;ReadPosRankSum=0.861;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,37:62:99:1275,0,847
+chr1	73877	.	A	G	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=64;Dels=0.00;FS=3.431;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=-0.836;QD=17.84;ReadPosRankSum=1.915;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,35:64:99:1170,0,987
+chr1	73917	.	A	G	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;DP=66;Dels=0.00;FS=2.047;HaplotypeScore=1.9912;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=-0.905;QD=16.80;ReadPosRankSum=-0.686;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:32,34:66:99:1137,0,1083
+chr1	73927	.	T	C	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DP=59;Dels=0.00;FS=3.614;HaplotypeScore=2.6984;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=0.812;QD=17.32;ReadPosRankSum=-1.419;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,31:59:99:1050,0,941
+chr1	73941	.	C	G	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.6987;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=0.313;QD=14.74;ReadPosRankSum=0.194;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:30,25:55:99:839,0,1011
+chr1	73956	.	A	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DP=45;Dels=0.00;FS=4.291;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=-0.468;QD=13.53;ReadPosRankSum=0.514;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,20:45:99:637,0,849
+chr1	74024	.	G	C	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.16;MQ0=3;MQRankSum=-2.569;QD=14.19;ReadPosRankSum=0.231;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,26:46:99:681,0,673
+chr1	74047	.	G	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;DP=52;Dels=0.00;FS=6.153;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.43;MQ0=4;MQRankSum=-3.097;QD=12.90;ReadPosRankSum=-1.455;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:24,28:52:99:699,0,647
+chr1	74080	.	G	A	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DP=58;Dels=0.00;FS=2.389;HaplotypeScore=1.7306;MLEAC=1;MLEAF=0.500;MQ=48.01;MQ0=4;MQRankSum=-5.098;QD=10.86;ReadPosRankSum=1.030;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:31,27:58:99:658,0,902
+chr1	74086	.	A	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7306;MLEAC=1;MLEAF=0.500;MQ=50.43;MQ0=1;MQRankSum=-6.245;QD=9.29;ReadPosRankSum=1.114;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,26:54:99:530,0,995
+chr1	74089	.	T	G	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7306;MLEAC=1;MLEAF=0.500;MQ=50.62;MQ0=1;MQRankSum=-6.297;QD=9.30;ReadPosRankSum=0.711;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,26:55:99:540,0,1006
+chr1	74105	.	G	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4678;MLEAC=1;MLEAF=0.500;MQ=50.74;MQ0=1;MQRankSum=-6.154;QD=8.18;ReadPosRankSum=-0.700;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,24:53:99:462,0,1044
+chr1	74115	.	A	G	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=50.24;MQ0=1;MQRankSum=-5.772;QD=6.19;ReadPosRankSum=-0.920;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:26,21:47:99:319,0,952
+chr1	74119	.	A	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.277;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=1;MQRankSum=-5.551;QD=7.02;ReadPosRankSum=-0.702;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,19:44:99:337,0,895
+chr1	74274	.	A	T	879.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=29.88;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:908,69,0
+chr1	74343	.	C	T	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=0.918;QD=17.18;ReadPosRankSum=3.291;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:27,28:55:99:973,0,882
+chr1	74475	.	C	T	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;DP=61;Dels=0.00;FS=12.530;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.79;MQ0=0;MQRankSum=-6.052;QD=16.83;ReadPosRankSum=2.532;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:31,30:61:99:1055,0,1074
+chr1	74477	.	T	C	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.511;DP=59;Dels=0.00;FS=10.241;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.60;MQ0=0;MQRankSum=-5.936;QD=17.84;ReadPosRankSum=2.070;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,30:59:99:1081,0,1017
+chr1	74481	.	G	A	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;DP=60;Dels=0.00;FS=7.540;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.70;MQ0=0;MQRankSum=-5.682;QD=18.41;ReadPosRankSum=1.030;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,32:60:99:1133,0,933
+chr1	74490	.	A	G	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DP=62;Dels=0.00;FS=5.488;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.78;MQ0=0;MQRankSum=5.728;QD=13.50;ReadPosRankSum=1.106;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:36,26:62:99:865,0,1275
+chr1	74532	.	C	T	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQ0=0;MQRankSum=-1.874;QD=18.60;ReadPosRankSum=-1.368;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,33:61:99:1163,0,974
+chr1	74539	.	T	A	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-2.447;QD=15.63;ReadPosRankSum=0.686;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:31,27:58:99:935,0,1102
+chr1	74540	.	A	T	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-0.639;QD=15.55;ReadPosRankSum=0.733;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:31,27:58:99:930,0,1112
+chr1	74544	.	T	C	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=1.937;QD=16.08;ReadPosRankSum=0.331;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:32,30:63:99:1041,0,1120
+chr1	74554	.	T	C	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DP=62;Dels=0.00;FS=0.939;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=1.760;QD=15.63;ReadPosRankSum=1.056;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:31,31:62:99:997,0,1066
+chr1	74559	.	A	G	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.806;QD=16.03;ReadPosRankSum=1.412;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:30,30:60:99:990,0,1042
+chr1	74590	.	G	A	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9966;MLEAC=1;MLEAF=0.500;MQ=57.98;MQ0=0;MQRankSum=0.903;QD=14.71;ReadPosRankSum=2.690;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,23:53:99:808,0,980
+chr1	74638	.	C	T	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820;DP=55;Dels=0.00;FS=1.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.49;MQ0=0;MQRankSum=1.355;QD=14.74;ReadPosRankSum=-1.574;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,27:55:99:839,0,868
+chr1	74648	.	C	A	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DP=53;Dels=0.00;FS=3.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=1.331;QD=14.88;ReadPosRankSum=-1.153;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,24:53:99:817,0,917
+chr1	74652	.	T	C	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;DP=50;Dels=0.00;FS=1.101;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.23;MQ0=0;MQRankSum=1.026;QD=14.20;ReadPosRankSum=-1.085;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,22:50:99:738,0,887
+chr1	74691	.	C	T	1222.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=28.86;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1251,96,0
+chr1	74732	.	C	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;DP=42;Dels=0.00;FS=18.002;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=-0.102;QD=12.26;ReadPosRankSum=-0.615;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,17:42:99:543,0,832
+chr1	74805	.	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DP=32;Dels=0.00;FS=11.588;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.183;QD=8.59;ReadPosRankSum=0.711;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,10:32:99:303,0,769
+chr1	74809	.	A	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;DP=28;Dels=0.00;FS=11.253;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=1.297;QD=7.10;ReadPosRankSum=0.432;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,8:28:99:227,0,624
+chr1	74810	.	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;DP=28;Dels=0.00;FS=11.253;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=-0.687;QD=7.67;ReadPosRankSum=0.280;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,8:28:99:243,0,706
+chr1	74816	.	A	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;DP=30;Dels=0.00;FS=8.475;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=2.064;QD=5.89;ReadPosRankSum=-0.025;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,7:30:99:205,0,702
+chr1	74826	.	T	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=19.9448;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=0.122;QD=28.38;ReadPosRankSum=2.717;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:4,19:23:88:681,0,88
+chr1	74830	.	A	T	738.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.315;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=17.9789;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.419;QD=33.58;ReadPosRankSum=0.315;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:1,21:22:25:767,25,0
+chr1	74836	.	A	T	949.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=18.7128;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=28.63;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:75:978,75,0
+chr1	74877	.	C	T	1344.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=29.67;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1373,105,0
+chr1	74921	.	A	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=-0.573;QD=6.31;ReadPosRankSum=1.929;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,12:35:99:249,0,790
+chr1	75391	.	G	T	704.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.040;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.7544;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.901;QD=28.19;ReadPosRankSum=1.595;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:1,24:25:25:733,25,0
+chr1	75393	.	T	C	692.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.069;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.9658;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-1.040;QD=27.71;ReadPosRankSum=1.595;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:1,24:25:24:721,24,0
+chr1	75399	.	C	A	731.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=30.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:60:760,60,0
+chr1	75407	.	G	A	466.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=27.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:39:495,39,0
+chr1	75408	.	T	C	474.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=27.93;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:39:503,39,0
+chr1	75441	.	A	G	77.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=19.32;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,4:4:9:105,9,0
+chr1	75443	.	A	G	77.28	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=19.32;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,4:4:9:105,9,0
+chr1	75447	.	C	T	75.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;QD=25.09;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
+chr1	75675	.	G	T	46.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
+chr1	75678	.	G	T	88.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.43;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
+chr1	75695	.	T	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;DP=34;Dels=0.00;FS=1.377;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.62;MQ0=1;MQRankSum=-0.738;QD=15.23;ReadPosRankSum=0.018;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:546,0,545
+chr1	75719	.	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=1;QD=26.81;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1869,138,0
+chr1	75727	.	A	G	2171.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=34.26;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2200,163,0
+chr1	75762	.	C	T	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;DP=56;Dels=0.00;FS=11.912;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=0.737;QD=13.66;ReadPosRankSum=-0.886;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:32,24:56:99:793,0,1062
+chr1	75763	.	T	C	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;DP=55;Dels=0.00;FS=9.903;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-0.486;QD=13.21;ReadPosRankSum=-0.828;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:32,23:55:99:755,0,1074
+chr1	75764	.	A	G	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;DP=55;Dels=0.00;FS=9.903;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=0.930;QD=13.14;ReadPosRankSum=-0.930;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:32,23:55:99:751,0,1072
+chr1	75807	.	A	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;DP=47;Dels=0.00;FS=1.116;HaplotypeScore=3.2018;MLEAC=1;MLEAF=0.500;MQ=55.41;MQ0=0;MQRankSum=-0.075;QD=12.72;ReadPosRankSum=-0.181;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:626,0,814
+chr1	75832	.	A	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=13.9498;MLEAC=1;MLEAF=0.500;MQ=54.71;MQ0=0;MQRankSum=-3.243;QD=6.99;ReadPosRankSum=3.243;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:15,7:22:99:182,0,490
+chr1	75838	.	A	C,T	525.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=11.9502;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.83;MQ0=0;QD=27.65;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/2:0,7,12:19:99:664,409,388,255,0,222
+chr1	75850	.	G	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DP=23;Dels=0.00;FS=4.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=-1.228;QD=19.73;ReadPosRankSum=0.346;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:9,14:23:99:482,0,253
+chr1	75905	.	T	G	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DP=45;Dels=0.00;FS=4.849;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=1;MQRankSum=-0.699;QD=20.26;ReadPosRankSum=-0.337;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:18,27:45:99:940,0,570
+chr1	75930	.	T	C	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=54;Dels=0.00;FS=8.156;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=1;MQRankSum=-2.270;QD=12.68;ReadPosRankSum=-0.996;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:30,24:54:99:713,0,1060
+chr1	75970	.	C	G	1604.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=1;QD=31.39;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1633,120,0
+chr1	76013	.	T	G	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DP=38;Dels=0.00;FS=1.402;HaplotypeScore=1.9956;MLEAC=1;MLEAF=0.500;MQ=55.23;MQ0=1;MQRankSum=0.479;QD=12.73;ReadPosRankSum=-1.655;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,16:38:99:512,0,658
+chr1	76032	.	A	T	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;DP=43;Dels=0.00;FS=5.229;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.57;MQ0=1;MQRankSum=1.973;QD=12.72;ReadPosRankSum=-0.333;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,18:43:99:575,0,722
+chr1	76087	.	C	A	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DP=51;Dels=0.00;FS=11.471;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=57.19;MQ0=0;MQRankSum=1.732;QD=14.84;ReadPosRankSum=0.521;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,23:51:99:785,0,818
+chr1	76168	.	T	C	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DP=43;Dels=0.00;FS=2.727;HaplotypeScore=5.8324;MLEAC=1;MLEAF=0.500;MQ=56.98;MQ0=1;MQRankSum=-0.743;QD=19.58;ReadPosRankSum=2.024;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:17,26:43:99:870,0,570
+chr1	76236	.	C	A	728.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.15;EFF=DOWNSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:57:757,57,0
+chr1	76283	.	C	A	1892.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=28.55;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1921,147,0
+chr1	76328	.	C	T	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;DP=51;Dels=0.00;FS=4.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=-0.205;QD=10.86;ReadPosRankSum=-2.893;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:32,19:51:99:582,0,977
+chr1	76334	.	A	G	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;DP=45;Dels=0.00;FS=1.279;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=2.653;QD=12.17;ReadPosRankSum=-1.587;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:27,18:45:99:576,0,815
+chr1	76427	.	A	C	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;DP=54;Dels=0.00;FS=12.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=1;MQRankSum=-0.169;QD=14.07;ReadPosRankSum=0.508;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,26:54:99:788,0,919
+chr1	76443	.	T	C	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;DP=59;Dels=0.00;FS=11.873;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=1;MQRankSum=0.451;QD=14.91;ReadPosRankSum=-0.513;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,30:59:99:908,0,963
+chr1	76465	.	C	T	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;DP=50;Dels=0.00;FS=19.919;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=1;MQRankSum=-1.733;QD=16.46;ReadPosRankSum=-0.711;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,27:50:99:851,0,769
+chr1	76478	.	G	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;DP=48;Dels=0.00;FS=13.782;HaplotypeScore=145.9761;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=1;MQRankSum=-2.207;QD=15.77;ReadPosRankSum=0.565;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,26:48:99:785,0,657
+chr1	76500	.	G	T	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996;DP=35;Dels=0.00;FS=1.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=0.959;QD=0.57;ReadPosRankSum=-3.137;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:31,4:35:48:48,0,1103
+chr1	76506	.	T	G	1303.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=30.53;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1332,99,0
+chr1	76543	.	A	C,T	956.29	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=9.9300;MLEAC=1,1;MLEAF=0.500,0.500;MQ=55.99;MQ0=0;MQRankSum=0.542;QD=29.88;ReadPosRankSum=0.650;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/2:1,12,19:32:99:1134,701,665,433,0,376
+chr1	76552	.	C	A	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;DP=33;Dels=0.00;FS=1.376;HaplotypeScore=16.6986;MLEAC=1;MLEAF=0.500;MQ=55.88;MQ0=0;MQRankSum=-3.019;QD=17.72;ReadPosRankSum=0.524;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:15,18:33:99:613,0,416
+chr1	76554	.	A	T	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=14.9106;MLEAC=1;MLEAF=0.500;MQ=55.91;MQ0=0;MQRankSum=-2.480;QD=15.93;ReadPosRankSum=0.827;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:570,0,574
+chr1	76667	.	C	A	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=50;Dels=0.00;FS=2.539;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.616;QD=22.38;ReadPosRankSum=2.961;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:18,32:50:99:1147,0,573
+chr1	76736	.	T	C	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.314;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.2657;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-0.771;QD=21.09;ReadPosRankSum=-0.603;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:17,27:44:99:956,0,527
+chr1	76758	.	A	G	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DP=38;Dels=0.00;FS=1.289;HaplotypeScore=16.4637;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=-0.370;QD=19.39;ReadPosRankSum=0.103;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,22:38:99:765,0,537
+chr1	76765	.	A	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DP=38;Dels=0.00;FS=1.281;HaplotypeScore=62.8561;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=0.219;QD=17.55;ReadPosRankSum=1.535;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:18,20:38:99:695,0,601
+chr1	76784	.	G	A	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DP=44;Dels=0.00;FS=2.498;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=0.258;QD=14.59;ReadPosRankSum=-1.433;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,21:44:99:670,0,738
+chr1	76813	.	G	T	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=1.777;QD=19.61;ReadPosRankSum=-1.476;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,32:52:99:1048,0,649
+chr1	76827	.	C	T	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=50;Dels=0.00;FS=1.117;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-1.020;QD=19.94;ReadPosRankSum=-1.218;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,30:50:99:1025,0,663
+chr1	76831	.	G	A	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=-0.124;QD=19.94;ReadPosRankSum=-1.136;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,33:54:99:1105,0,628
+chr1	76885	.	G	C	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;DP=51;Dels=0.00;FS=8.452;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.280;QD=21.15;ReadPosRankSum=0.878;EFF=UTR_3_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,31:51:99:1107,0,632
+chr1	76963	.	A	G	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DP=35;Dels=0.00;FS=1.313;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.421;QD=19.62;ReadPosRankSum=0.589;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTg/gCg|V46A|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:14,21:35:99:715,0,396
+chr1	76964	.	C	A	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DP=35;Dels=0.00;FS=1.313;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.364;QD=19.68;ReadPosRankSum=0.791;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Ttg|V46L|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:14,21:35:99:717,0,439
+chr1	76995	.	T	C	912.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=34.12;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcA/gcG|A35|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	1/1:0,24:24:72:941,72,0
+chr1	77019	.	T	G	807.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=28.76;EFF=SYNONYMOUS_CODING(LOW|SILENT|ggA/ggC|G27|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	1/1:0,22:22:66:836,66,0
+chr1	77028	.	G	T	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=0.083;QD=11.11;ReadPosRankSum=-0.305;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|agC/agA|S24R|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:15,10:25:99:306,0,525
+chr1	77030	.	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=33.45;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agc/Ggc|S24G|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1030,78,0
+chr1	77036	.	C	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;DP=29;Dels=0.00;FS=2.741;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=0.482;QD=9.75;ReadPosRankSum=1.399;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtc/Ctc|V22L|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:19,10:29:99:311,0,667
+chr1	77040	.	A	C	1106.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=28.97;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atT/atG|I20M|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	1/1:0,31:31:87:1135,87,0
+chr1	77066	.	C	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=38;Dels=0.00;FS=5.701;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-1.686;QD=15.94;ReadPosRankSum=2.051;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gcc/Acc|A12T|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:18,19:38:99:634,0,588
+chr1	77068	.	A	G	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.949;DP=38;Dels=0.00;FS=5.701;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-2.131;QD=16.28;ReadPosRankSum=2.336;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTa/gCa|V11A|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:19,19:38:99:647,0,593
+chr1	77072	.	G	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;DP=38;Dels=0.00;FS=5.701;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-1.518;QD=15.65;ReadPosRankSum=2.628;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctg/Gtg|L10V|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:19,19:38:99:623,0,636
+chr1	77092	.	C	G	1448.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.9948;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=33.69;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gGg/gCg|G3A|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1477,111,0
+chr1	77096	.	C	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;DP=45;Dels=0.00;FS=6.823;HaplotypeScore=2.9948;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-1.215;QD=17.06;ReadPosRankSum=0.534;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gag/Aag|E2K|Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:22,23:45:99:796,0,679
+chr1	77106	.	T	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DP=45;Dels=0.00;FS=4.485;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-1.035;QD=17.26;ReadPosRankSum=-1.240;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:21,24:45:99:805,0,662
+chr1	77122	.	A	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;DP=34;Dels=0.00;FS=3.155;HaplotypeScore=1.7338;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=-1.700;QD=14.32;ReadPosRankSum=-0.728;EFF=START_GAINED(LOW||||Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:19,15:34:99:515,0,632
+chr1	77126	.	A	T	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;DP=37;Dels=0.00;FS=7.143;HaplotypeScore=3.7335;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=-1.844;QD=14.97;ReadPosRankSum=-0.808;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:20,17:37:99:582,0,647
+chr1	77144	.	A	C	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DP=41;Dels=0.00;FS=4.506;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=-1.265;QD=15.85;ReadPosRankSum=0.170;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:21,20:41:99:678,0,682
+chr1	77180	.	C	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.879;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.1179;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=0.179;QD=17.54;ReadPosRankSum=-0.594;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|Exon_chr1_76277_77218)	GT:AD:DP:GQ:PL	0/1:16,24:40:99:730,0,535
+chr1	77221	.	C	G	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DP=43;Dels=0.00;FS=14.813;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.319;QD=20.88;ReadPosRankSum=-0.163;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:16,27:43:99:926,0,502
+chr1	77244	.	G	C	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;DP=39;Dels=0.00;FS=5.550;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.512;QD=21.81;ReadPosRankSum=0.454;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:14,25:39:99:879,0,425
+chr1	77298	.	T	G	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;DP=35;Dels=0.00;FS=5.506;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-1.901;QD=23.14;ReadPosRankSum=1.190;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:11,24:35:99:838,0,318
+chr1	77325	.	T	A	1222.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=37.76;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1251,96,0
+chr1	77332	.	G	A	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DP=32;Dels=0.00;FS=3.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=0;MQRankSum=-0.516;QD=22.34;ReadPosRankSum=0.278;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:11,21:32:99:743,0,352
+chr1	77376	.	T	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=83.6545;MLEAC=1;MLEAF=0.500;MQ=55.75;MQ0=0;MQRankSum=-2.434;QD=15.40;ReadPosRankSum=0.431;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:26,23:49:99:783,0,747
+chr1	77378	.	A	C	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=124.2479;MLEAC=1;MLEAF=0.500;MQ=55.75;MQ0=0;MQRankSum=-2.053;QD=15.32;ReadPosRankSum=0.431;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:26,23:49:99:779,0,892
+chr1	77438	.	C	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;DP=53;Dels=0.00;FS=15.115;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.633;QD=16.94;ReadPosRankSum=-2.539;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,28:53:99:926,0,869
+chr1	77442	.	T	G	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;DP=51;Dels=0.00;FS=15.703;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=0.218;QD=15.02;ReadPosRankSum=3.474;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,23:51:99:794,0,934
+chr1	77449	.	T	C	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;DP=48;Dels=0.00;FS=11.196;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=0.972;QD=13.39;ReadPosRankSum=2.206;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,20:48:99:671,0,945
+chr1	77450	.	A	G	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;DP=46;Dels=0.00;FS=11.459;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=0.853;QD=14.34;ReadPosRankSum=1.673;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:26,20:46:99:688,0,862
+chr1	77458	.	A	T	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;DP=51;Dels=0.00;FS=16.807;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=1;MQRankSum=2.301;QD=15.23;ReadPosRankSum=0.146;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:26,25:51:99:805,0,791
+chr1	77464	.	G	A	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;DP=49;Dels=0.00;FS=17.115;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=1;MQRankSum=-0.908;QD=16.95;ReadPosRankSum=-1.610;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,26:49:99:859,0,697
+chr1	77489	.	G	A	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;DP=46;Dels=0.00;FS=12.506;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=57.16;MQ0=2;MQRankSum=-0.625;QD=14.45;ReadPosRankSum=2.345;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,25:46:99:693,0,690
+chr1	77491	.	A	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;DP=45;Dels=0.00;FS=15.152;HaplotypeScore=1.9545;MLEAC=1;MLEAF=0.500;MQ=56.71;MQ0=2;MQRankSum=2.203;QD=12.71;ReadPosRankSum=-1.489;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:26,19:45:99:600,0,730
+chr1	77495	.	A	G	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=41;Dels=0.00;FS=16.483;HaplotypeScore=1.9545;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=2;MQRankSum=2.237;QD=11.36;ReadPosRankSum=-0.476;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,16:41:99:494,0,766
+chr1	77531	.	A	G	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DP=49;Dels=0.00;FS=11.272;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.43;MQ0=3;MQRankSum=4.899;QD=15.53;ReadPosRankSum=1.626;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:24,25:49:99:789,0,677
+chr1	77535	.	C	T	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=49;Dels=0.00;FS=13.395;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.31;MQ0=3;MQRankSum=-5.229;QD=14.63;ReadPosRankSum=-2.065;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,24:49:99:745,0,801
+chr1	77544	.	C	T	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;DP=48;Dels=0.00;FS=11.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.09;MQ0=3;MQRankSum=-5.517;QD=13.20;ReadPosRankSum=-0.330;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:26,22:48:99:662,0,770
+chr1	77549	.	C	G	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;DP=50;Dels=0.00;FS=10.772;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.34;MQ0=3;MQRankSum=-5.596;QD=12.14;ReadPosRankSum=0.332;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,22:50:99:635,0,869
+chr1	77557	.	A	G	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DP=45;Dels=0.00;FS=9.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.37;MQ0=3;MQRankSum=-5.553;QD=14.15;ReadPosRankSum=0.416;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,22:45:99:665,0,732
+chr1	77577	.	T	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=55.12;MQ0=3;MQRankSum=-3.998;QD=6.89;ReadPosRankSum=2.292;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:26,12:38:99:290,0,880
+chr1	77581	.	T	G	1321.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=2;QD=31.22;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1350,99,0
+chr1	77582	.	A	G	1318.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=2;QD=29.89;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1347,99,0
+chr1	77589	.	C	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DP=42;Dels=0.00;FS=4.743;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=2;MQRankSum=-2.271;QD=11.95;ReadPosRankSum=-0.055;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:24,18:42:99:530,0,807
+chr1	77592	.	G	A	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DP=43;Dels=0.00;FS=2.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.45;MQ0=2;MQRankSum=2.439;QD=16.46;ReadPosRankSum=0.952;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:21,22:43:99:736,0,657
+chr1	77593	.	T	C	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;DP=43;Dels=0.00;FS=2.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.45;MQ0=2;MQRankSum=-1.969;QD=15.04;ReadPosRankSum=-0.874;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:675,0,722
+chr1	77615	.	C	T	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;DP=43;Dels=0.00;FS=2.820;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.50;MQ0=2;MQRankSum=-0.327;QD=16.53;ReadPosRankSum=-0.327;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,23:43:99:739,0,655
+chr1	77617	.	C	T	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;DP=42;Dels=0.00;FS=4.575;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=2;MQRankSum=0.488;QD=16.40;ReadPosRankSum=0.027;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:20,22:42:99:717,0,653
+chr1	77620	.	T	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;DP=43;Dels=0.00;FS=2.687;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=2;MQRankSum=0.013;QD=12.79;ReadPosRankSum=0.781;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,17:43:99:578,0,822
+chr1	77633	.	G	A	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=1;MQRankSum=1.015;QD=11.33;ReadPosRankSum=-0.555;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:27,15:42:99:504,0,850
+chr1	77648	.	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;DP=44;Dels=0.00;FS=1.269;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=58.10;MQ0=1;MQRankSum=0.304;QD=8.81;ReadPosRankSum=-0.569;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:31,13:44:99:416,0,909
+chr1	77650	.	T	C	1540.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.9998;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=1;QD=31.92;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1569,120,0
+chr1	77695	.	A	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;DP=48;Dels=0.00;FS=11.450;HaplotypeScore=1.9984;MLEAC=1;MLEAF=0.500;MQ=56.59;MQ0=1;MQRankSum=-1.215;QD=11.39;ReadPosRankSum=-2.156;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,19:48:99:575,0,980
+chr1	77770	.	C	T	2115.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=2;QD=26.51;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2144,163,0
+chr1	77798	.	A	G	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;DP=51;Dels=0.00;FS=4.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.36;MQ0=1;MQRankSum=-0.292;QD=13.56;ReadPosRankSum=-0.856;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,23:51:99:720,0,928
+chr1	77814	.	G	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;DP=51;Dels=0.00;FS=4.322;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=54.03;MQ0=1;MQRankSum=-1.124;QD=18.72;ReadPosRankSum=0.283;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:22,29:51:99:983,0,686
+chr1	77873	.	G	A	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DP=45;Dels=0.00;FS=1.232;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=1.065;QD=20.19;ReadPosRankSum=-2.142;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:17,28:45:99:937,0,508
+chr1	77951	.	C	A	2019.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.7336;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=31.25;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2048,159,0
+chr1	77986	.	T	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DP=56;Dels=0.00;FS=5.494;HaplotypeScore=1.9774;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=-1.712;QD=14.80;ReadPosRankSum=0.778;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,28:56:99:857,0,933
+chr1	78007	.	C	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.299;DP=43;Dels=0.00;FS=1.315;HaplotypeScore=19.9836;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=0.842;QD=11.18;ReadPosRankSum=0.565;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:27,16:43:99:509,0,882
+chr1	78009	.	C	T	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=21.9828;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-1.014;QD=19.65;ReadPosRankSum=-0.060;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:18,26:44:99:893,0,579
+chr1	78012	.	T	A	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=21.9828;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=0.037;QD=18.65;ReadPosRankSum=-0.185;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:18,25:43:99:830,0,589
+chr1	78019	.	T	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=44;Dels=0.00;FS=3.112;HaplotypeScore=24.9845;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-0.446;QD=10.13;ReadPosRankSum=2.105;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:29,15:44:99:474,0,1015
+chr1	78027	.	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;DP=44;Dels=0.00;FS=12.758;HaplotypeScore=6.9973;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=0.701;QD=1.72;ReadPosRankSum=-1.043;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:38,6:44:99:104,0,1372
+chr1	78118	.	T	A	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;DP=54;Dels=0.00;FS=1.040;HaplotypeScore=35.7719;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-0.892;QD=19.46;ReadPosRankSum=1.994;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:23,31:54:99:1079,0,770
+chr1	78134	.	C	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;DP=54;Dels=0.00;FS=2.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=0.099;QD=11.72;ReadPosRankSum=-0.958;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:34,20:54:99:661,0,1176
+chr1	78240	.	T	C	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;DP=57;Dels=0.00;FS=3.838;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=0.234;QD=19.35;ReadPosRankSum=0.444;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:24,33:57:99:1131,0,782
+chr1	78243	.	T	A	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;DP=58;Dels=0.00;FS=5.380;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=0.361;QD=19.34;ReadPosRankSum=0.848;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:25,33:58:99:1150,0,823
+chr1	78259	.	A	G	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=58;Dels=0.00;FS=5.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=1.330;QD=17.05;ReadPosRankSum=0.319;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|)	GT:AD:DP:GQ:PL	0/1:28,30:58:99:1017,0,977
+chr1	78296	.	C	T	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;DP=35;Dels=0.00;FS=5.073;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=0.286;QD=20.34;ReadPosRankSum=1.667;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:14,21:35:99:740,0,458
+chr1	78417	.	A	G	2257.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=1;QD=27.55;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2286,172,0
+chr1	78420	.	T	C	2412.77	.	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=1;QD=32.78;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2441,184,0
+chr1	78459	.	A	G	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;DP=56;Dels=0.00;FS=1.071;HaplotypeScore=2.7605;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=4;MQRankSum=1.156;QD=18.75;ReadPosRankSum=1.026;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:23,33:56:99:1078,0,681
+chr1	78480	.	G	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9932;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=4;MQRankSum=-1.866;QD=7.95;ReadPosRankSum=-1.529;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,17:49:99:418,0,1082
+chr1	78503	.	A	C	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DP=60;Dels=0.00;FS=2.699;HaplotypeScore=42.4334;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=3;MQRankSum=1.437;QD=23.45;ReadPosRankSum=2.809;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:15,45:60:99:1435,0,403
+chr1	78548	.	T	A	2170.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.73;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2199,166,0
+chr1	78601	.	G	A	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DP=48;Dels=0.00;FS=5.335;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=-0.133;QD=24.00;ReadPosRankSum=-0.200;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:15,33:48:99:1180,0,463
+chr1	78639	.	C	A	1912.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.86;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1941,147,0
+chr1	78753	.	G	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=65;Dels=0.00;FS=0.960;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-0.007;QD=12.77;ReadPosRankSum=-0.353;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:38,27:65:99:858,0,1336
+chr1	78787	.	G	A	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DP=61;Dels=0.00;FS=1.030;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.660;QD=22.39;ReadPosRankSum=-0.751;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,40:61:99:1394,0,614
+chr1	78815	.	A	G	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;DP=57;Dels=0.00;FS=3.773;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.336;QD=20.50;ReadPosRankSum=1.320;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:22,35:57:99:1197,0,695
+chr1	78892	.	C	T	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.584;QD=15.69;ReadPosRankSum=0.175;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,28:59:99:954,0,1057
+chr1	78931	.	G	A	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869;DP=63;Dels=0.00;FS=11.290;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.796;QD=16.93;ReadPosRankSum=-1.025;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,33:63:99:1095,0,1023
+chr1	78981	.	T	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.954;DP=27;Dels=0.00;FS=12.207;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=-0.904;QD=4.88;ReadPosRankSum=2.537;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,6:27:99:160,0,693
+chr1	78994	.	T	A	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.138;DP=38;Dels=0.00;FS=22.047;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=2.492;QD=20.10;ReadPosRankSum=-0.738;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:13,25:38:99:792,0,376
+chr1	79011	.	A	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;DP=42;Dels=0.00;FS=18.301;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=0;MQRankSum=-0.654;QD=7.21;ReadPosRankSum=1.573;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,12:42:99:331,0,1024
+chr1	79031	.	C	A	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DP=45;Dels=0.00;FS=23.835;HaplotypeScore=3.8993;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=2.704;QD=20.24;ReadPosRankSum=0.386;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:17,28:45:99:939,0,503
+chr1	79032	.	T	C	1667.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=16.9978;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=32.21;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1696,126,0
+chr1	79035	.	C	G	1664.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.115;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.8993;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.578;QD=32.37;ReadPosRankSum=0.654;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:1,44:45:92:1693,92,0
+chr1	79092	.	A	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=56;Dels=0.00;FS=20.015;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=-1.258;QD=7.25;ReadPosRankSum=1.147;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:41,15:56:99:434,0,1487
+chr1	79155	.	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;DP=43;Dels=0.00;FS=24.229;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=-0.433;QD=4.20;ReadPosRankSum=1.776;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:34,9:43:99:209,0,1210
+chr1	79179	.	A	G	1612.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=29.41;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1641,126,0
+chr1	79211	.	G	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;DP=44;Dels=0.00;FS=24.701;HaplotypeScore=3.9990;MLEAC=1;MLEAF=0.500;MQ=55.60;MQ0=0;MQRankSum=-4.230;QD=6.36;ReadPosRankSum=2.095;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,12:44:99:308,0,1153
+chr1	79215	.	A	G	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.314;DP=46;Dels=0.00;FS=28.108;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=-3.940;QD=5.84;ReadPosRankSum=2.539;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:34,12:46:99:297,0,1207
+chr1	79219	.	C	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;DP=48;Dels=0.00;FS=32.959;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=55.98;MQ0=0;MQRankSum=-4.417;QD=5.62;ReadPosRankSum=2.464;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:36,12:48:99:298,0,1293
+chr1	79223	.	A	C	1751.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7884;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=31.46;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1780,135,0
+chr1	79242	.	C	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DP=54;Dels=0.00;FS=36.287;HaplotypeScore=13.9681;MLEAC=1;MLEAF=0.500;MQ=54.78;MQ0=0;MQRankSum=-5.699;QD=8.00;ReadPosRankSum=-1.173;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:37,17:54:99:460,0,1314
+chr1	79253	.	C	T	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;DP=49;Dels=0.00;FS=18.054;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=54.73;MQ0=0;MQRankSum=5.556;QD=23.30;ReadPosRankSum=2.594;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:17,32:49:99:1170,0,488
+chr1	79258	.	C	T	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;DP=50;Dels=0.00;FS=15.207;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=55.38;MQ0=0;MQRankSum=-4.996;QD=7.74;ReadPosRankSum=-1.397;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:35,15:50:99:415,0,1279
+chr1	79284	.	A	T	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;DP=48;Dels=0.00;FS=2.747;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.92;MQ0=0;MQRankSum=-4.938;QD=8.83;ReadPosRankSum=1.401;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:33,15:48:99:452,0,1222
+chr1	79288	.	G	C	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;DP=48;Dels=0.00;FS=2.747;HaplotypeScore=25.1292;MLEAC=1;MLEAF=0.500;MQ=55.92;MQ0=0;MQRankSum=-5.205;QD=8.68;ReadPosRankSum=1.690;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:33,15:48:99:445,0,1219
+chr1	79300	.	T	A	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=-4.876;QD=8.74;ReadPosRankSum=1.877;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,14:44:99:413,0,1090
+chr1	79321	.	G	C	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.16;MQ0=0;MQRankSum=-4.816;QD=15.72;ReadPosRankSum=-0.137;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:19,18:37:99:610,0,654
+chr1	79322	.	C	A	1506.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=35.79;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1535,114,0
+chr1	79337	.	G	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;DP=33;Dels=0.00;FS=3.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.87;MQ0=0;MQRankSum=-4.610;QD=14.14;ReadPosRankSum=1.392;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:18,15:33:99:495,0,617
+chr1	79397	.	C	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;DP=32;Dels=0.00;FS=32.017;HaplotypeScore=1.9978;MLEAC=1;MLEAF=0.500;MQ=53.02;MQ0=0;MQRankSum=-4.602;QD=9.12;ReadPosRankSum=-2.420;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,11:32:99:320,0,754
+chr1	79404	.	T	A	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;DP=40;Dels=0.00;FS=20.081;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.86;MQ0=0;MQRankSum=-5.252;QD=10.74;ReadPosRankSum=-1.648;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,15:40:99:458,0,853
+chr1	79408	.	T	A	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;DP=42;Dels=0.00;FS=18.695;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.17;MQ0=0;MQRankSum=-4.894;QD=11.90;ReadPosRankSum=-1.666;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,17:42:99:528,0,853
+chr1	79425	.	C	T	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;DP=44;Dels=0.00;FS=12.871;HaplotypeScore=3.5215;MLEAC=1;MLEAF=0.500;MQ=56.34;MQ0=0;MQRankSum=-3.990;QD=9.90;ReadPosRankSum=1.522;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,15:44:99:464,0,918
+chr1	79451	.	G	A	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;DP=45;Dels=0.00;FS=2.772;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-1.017;QD=9.04;ReadPosRankSum=1.361;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,14:45:99:435,0,1059
+chr1	79452	.	A	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DP=46;Dels=0.00;FS=2.785;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=-1.218;QD=9.36;ReadPosRankSum=1.148;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,15:46:99:459,0,1031
+chr1	79468	.	C	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;DP=48;Dels=0.00;FS=1.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-0.623;QD=14.00;ReadPosRankSum=-0.748;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,21:48:99:700,0,913
+chr1	79478	.	G	C	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;DP=53;Dels=0.00;FS=3.828;HaplotypeScore=1.6648;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-0.471;QD=16.94;ReadPosRankSum=-1.753;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,27:53:99:926,0,881
+chr1	79598	.	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;DP=38;Dels=0.00;FS=9.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=0;MQRankSum=-3.061;QD=4.23;ReadPosRankSum=-0.877;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,8:38:99:189,0,1018
+chr1	79615	.	T	C	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=40;Dels=0.00;FS=4.786;HaplotypeScore=23.6444;MLEAC=1;MLEAF=0.500;MQ=52.64;MQ0=0;MQRankSum=-5.315;QD=11.17;ReadPosRankSum=0.428;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:24,16:40:99:475,0,803
+chr1	79617	.	T	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DP=40;Dels=0.00;FS=9.975;HaplotypeScore=31.2856;MLEAC=1;MLEAF=0.500;MQ=52.64;MQ0=0;MQRankSum=-4.200;QD=4.77;ReadPosRankSum=0.762;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:24,8:40:99:219,0,844
+chr1	79618	.	G	A	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=31.2856;MLEAC=1;MLEAF=0.500;MQ=52.64;MQ0=0;MQRankSum=-3.364;QD=3.47;ReadPosRankSum=0.254;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,8:40:99:167,0,1124
+chr1	79619	.	C	T	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;DP=40;Dels=0.00;FS=4.786;HaplotypeScore=31.2856;MLEAC=1;MLEAF=0.500;MQ=52.64;MQ0=0;MQRankSum=-5.315;QD=11.09;ReadPosRankSum=1.256;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:24,16:40:99:472,0,808
+chr1	79624	.	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;DP=37;Dels=0.00;FS=12.746;HaplotypeScore=31.2856;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=0;MQRankSum=-3.007;QD=4.86;ReadPosRankSum=1.605;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:29,8:37:99:208,0,974
+chr1	79626	.	G	A	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;DP=37;Dels=0.00;FS=13.178;HaplotypeScore=23.5003;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=0;MQRankSum=-3.007;QD=4.83;ReadPosRankSum=1.826;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:29,8:37:99:207,0,1010
+chr1	79627	.	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DP=37;Dels=0.00;FS=13.178;HaplotypeScore=23.5003;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=0;MQRankSum=-3.007;QD=4.86;ReadPosRankSum=1.900;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:29,8:37:99:208,0,1015
+chr1	79640	.	C	T	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DP=51;Dels=0.00;FS=14.590;HaplotypeScore=7.9961;MLEAC=1;MLEAF=0.500;MQ=54.80;MQ0=0;MQRankSum=-1.369;QD=9.39;ReadPosRankSum=0.230;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:34,17:51:99:507,0,1160
+chr1	79641	.	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DP=51;Dels=0.00;FS=3.858;HaplotypeScore=7.9961;MLEAC=1;MLEAF=0.500;MQ=54.80;MQ0=0;MQRankSum=-3.463;QD=1.92;ReadPosRankSum=3.189;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:44,7:51:99:126,0,1543
+chr1	79670	.	A	G	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.536;DP=46;Dels=0.00;FS=2.588;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=55.55;MQ0=0;MQRankSum=-3.131;QD=14.97;ReadPosRankSum=1.235;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,21:46:99:717,0,801
+chr1	79675	.	C	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;DP=43;Dels=0.00;FS=2.704;HaplotypeScore=18.9737;MLEAC=1;MLEAF=0.500;MQ=55.22;MQ0=0;MQRankSum=-2.223;QD=15.51;ReadPosRankSum=0.765;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:695,0,699
+chr1	79697	.	C	A	978.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.70;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1007,78,0
+chr1	79745	.	C	G	1250.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=25.03;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1279,93,0
+chr1	79753	.	C	T	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.941;DP=37;Dels=0.00;FS=4.943;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=0.411;QD=13.21;ReadPosRankSum=0.290;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:20,17:37:99:517,0,675
+chr1	79807	.	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=7.7317;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=31.02;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1048,81,0
+chr1	79827	.	C	T	1289.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=35.57;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1318,99,0
+chr1	79840	.	A	G	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=0;MQRankSum=-0.127;QD=12.11;ReadPosRankSum=0.055;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:19,14:33:99:428,0,660
+chr1	79842	.	G	A	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=0;MQRankSum=1.492;QD=20.75;ReadPosRankSum=-0.608;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:13,20:33:99:713,0,391
+chr1	79860	.	G	A	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;DP=38;Dels=0.00;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.06;MQ0=0;MQRankSum=-1.839;QD=14.44;ReadPosRankSum=0.000;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:19,19:38:99:577,0,643
+chr1	80003	.	A	T	1616.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=28.66;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1645,123,0
+chr1	80017	.	T	A	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;DP=38;Dels=0.00;FS=4.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=0.458;QD=12.63;ReadPosRankSum=0.340;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:22,16:38:99:508,0,721
+chr1	80041	.	T	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;DP=37;Dels=0.00;FS=2.846;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.611;QD=11.24;ReadPosRankSum=-1.174;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:23,14:37:99:444,0,776
+chr1	80045	.	G	C	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DP=36;Dels=0.00;FS=1.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.811;QD=21.47;ReadPosRankSum=1.548;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:13,23:36:99:801,0,403
+chr1	80079	.	G	C	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;DP=36;Dels=0.00;FS=4.943;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.481;QD=12.77;ReadPosRankSum=-2.952;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,15:36:99:488,0,737
+chr1	80117	.	C	T	1871.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.15;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1900,141,0
+chr1	80171	.	A	G	1589.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=19.9948;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=31.59;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1618,120,0
+chr1	80184	.	G	A	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=-2.084;QD=20.44;ReadPosRankSum=-1.173;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:16,24:40:99:846,0,495
+chr1	80244	.	T	C	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;DP=32;Dels=0.00;FS=7.806;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.62;MQ0=0;MQRankSum=-3.927;QD=16.96;ReadPosRankSum=1.888;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:15,17:32:99:571,0,493
+chr1	80416	.	C	A	796.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=33.46;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:63:825,63,0
+chr1	80710	.	A	G	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;DP=36;Dels=0.00;FS=5.334;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=-1.350;QD=10.69;ReadPosRankSum=3.030;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:23,13:36:99:413,0,777
+chr1	80861	.	C	T	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;DP=39;Dels=0.00;FS=2.826;HaplotypeScore=1.6649;MLEAC=1;MLEAF=0.500;MQ=56.36;MQ0=0;MQRankSum=-1.328;QD=19.05;ReadPosRankSum=1.242;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:16,23:39:99:771,0,477
+chr1	80867	.	T	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;DP=39;Dels=0.00;FS=2.869;HaplotypeScore=1.6649;MLEAC=1;MLEAF=0.500;MQ=56.36;MQ0=0;MQRankSum=-1.827;QD=16.40;ReadPosRankSum=1.374;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:17,22:39:99:668,0,541
+chr1	80925	.	G	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;DP=44;Dels=0.00;FS=22.159;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=1;MQRankSum=0.041;QD=7.20;ReadPosRankSum=0.203;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,13:44:99:345,0,1053
+chr1	80926	.	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;DP=43;Dels=0.00;FS=19.771;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=1;MQRankSum=-0.744;QD=6.37;ReadPosRankSum=0.200;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,12:43:99:302,0,1088
+chr1	80927	.	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;DP=43;Dels=0.00;FS=19.771;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=1;MQRankSum=0.057;QD=6.27;ReadPosRankSum=0.372;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,12:43:99:298,0,1101
+chr1	80933	.	T	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;DP=45;Dels=0.00;FS=23.434;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=1;MQRankSum=-1.225;QD=7.17;ReadPosRankSum=0.856;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,13:45:99:351,0,1105
+chr1	80959	.	T	A	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;DP=45;Dels=0.00;FS=5.002;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=1;MQRankSum=0.940;QD=10.44;ReadPosRankSum=-0.121;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,18:45:99:498,0,944
+chr1	80967	.	C	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;DP=44;Dels=0.00;FS=5.002;HaplotypeScore=1.1567;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=1;MQRankSum=0.490;QD=11.29;ReadPosRankSum=0.666;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,17:44:99:525,0,924
+chr1	81012	.	C	G	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;DP=40;Dels=0.00;FS=4.442;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.019;QD=17.52;ReadPosRankSum=1.672;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:18,22:40:99:729,0,588
+chr1	81069	.	C	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DP=44;Dels=0.00;FS=23.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.919;QD=12.97;ReadPosRankSum=0.155;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,18:44:99:599,0,905
+chr1	81071	.	T	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DP=44;Dels=0.00;FS=23.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.373;QD=12.54;ReadPosRankSum=0.060;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,18:44:99:580,0,911
+chr1	81072	.	C	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.097;DP=45;Dels=0.00;FS=20.102;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.286;QD=12.66;ReadPosRankSum=-0.081;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,18:45:99:598,0,942
+chr1	81095	.	C	G	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;DP=57;Dels=0.00;FS=23.054;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.781;QD=8.77;ReadPosRankSum=-1.073;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:39,18:57:99:528,0,1396
+chr1	81130	.	T	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;DP=46;Dels=0.00;FS=1.253;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=-0.726;QD=8.95;ReadPosRankSum=0.375;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,15:46:99:440,0,1117
+chr1	81131	.	T	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;DP=46;Dels=0.00;FS=1.253;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=-1.523;QD=8.78;ReadPosRankSum=0.422;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,15:46:99:432,0,1127
+chr1	81133	.	T	C	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=45;Dels=0.00;FS=1.237;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-0.951;QD=9.33;ReadPosRankSum=0.349;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,15:45:99:448,0,1081
+chr1	81169	.	A	G	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;DP=49;Dels=0.00;FS=8.418;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=-2.172;QD=13.10;ReadPosRankSum=2.091;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:28,21:49:99:670,0,987
+chr1	81178	.	C	A	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DP=50;Dels=0.00;FS=8.297;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.71;MQ0=0;MQRankSum=-3.555;QD=11.28;ReadPosRankSum=1.634;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,20:50:99:592,0,991
+chr1	81185	.	G	A	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.606;DP=41;Dels=0.00;FS=12.377;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQ0=0;MQRankSum=-3.568;QD=11.26;ReadPosRankSum=1.403;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,16:41:99:490,0,818
+chr1	81268	.	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1532,114,0
+chr1	81303	.	C	T	1678.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=31.18;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1707,126,0
+chr1	81317	.	C	T	1738.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=33.51;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1767,132,0
+chr1	81331	.	A	C	1662.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3989;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=37.65;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1691,129,0
+chr1	81371	.	G	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;DP=48;Dels=0.00;FS=4.645;HaplotypeScore=1.9957;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=0;MQRankSum=-4.473;QD=6.60;ReadPosRankSum=-2.001;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,16:48:99:345,0,1127
+chr1	81408	.	A	G	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;DP=53;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.12;MQ0=0;MQRankSum=-4.943;QD=8.94;ReadPosRankSum=2.754;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:34,19:53:99:502,0,1182
+chr1	81418	.	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;DP=50;Dels=0.00;FS=21.604;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=0;MQRankSum=-4.962;QD=9.28;ReadPosRankSum=2.375;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,18:50:99:492,0,1136
+chr1	81422	.	A	T	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;DP=48;Dels=0.00;FS=21.618;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.46;MQ0=0;MQRankSum=5.281;QD=21.62;ReadPosRankSum=-2.242;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:17,31:48:99:1066,0,457
+chr1	81453	.	C	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DP=46;Dels=0.00;FS=16.375;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=56.67;MQ0=0;MQRankSum=-4.476;QD=8.15;ReadPosRankSum=0.442;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,14:46:99:403,0,1150
+chr1	81455	.	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;DP=46;Dels=0.00;FS=16.375;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=56.67;MQ0=0;MQRankSum=-3.808;QD=8.04;ReadPosRankSum=0.251;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,14:46:99:398,0,1139
+chr1	81456	.	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;DP=47;Dels=0.00;FS=15.915;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=56.40;MQ0=0;MQRankSum=-4.013;QD=8.02;ReadPosRankSum=0.384;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:33,14:47:99:405,0,1154
+chr1	81457	.	G	A	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;DP=46;Dels=0.00;FS=15.915;HaplotypeScore=1.3123;MLEAC=1;MLEAF=0.500;MQ=56.32;MQ0=0;MQRankSum=-3.617;QD=8.36;ReadPosRankSum=0.131;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,14:46:99:413,0,1151
+chr1	81482	.	G	T	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DP=50;Dels=0.00;FS=4.620;HaplotypeScore=1.7206;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=2.035;QD=24.74;ReadPosRankSum=0.265;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:13,37:50:99:1265,0,325
+chr1	81533	.	A	G	1828.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=2.352;QD=28.88;ReadPosRankSum=-0.619;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:2,48:50:99:1857,123,0
+chr1	81544	.	A	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.8400;MLEAC=1;MLEAF=0.500;MQ=56.30;MQ0=0;MQRankSum=2.542;QD=8.41;ReadPosRankSum=-0.370;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:32,14:46:99:415,0,1040
+chr1	81580	.	A	G	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DP=43;Dels=0.00;FS=2.885;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.64;MQ0=0;MQRankSum=1.644;QD=14.60;ReadPosRankSum=-2.471;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:23,20:43:99:656,0,776
+chr1	81581	.	G	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DP=43;Dels=0.00;FS=4.524;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.64;MQ0=0;MQRankSum=0.767;QD=15.18;ReadPosRankSum=-2.496;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:23,20:43:99:681,0,762
+chr1	81594	.	G	A	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;DP=41;Dels=0.00;FS=1.230;HaplotypeScore=4.9968;MLEAC=1;MLEAF=0.500;MQ=56.45;MQ0=0;MQRankSum=-0.251;QD=19.53;ReadPosRankSum=1.919;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:17,24:41:99:829,0,565
+chr1	81600	.	T	G	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.903;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.9968;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=0;MQRankSum=-2.660;QD=16.65;ReadPosRankSum=2.588;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,22:43:99:744,0,706
+chr1	81603	.	C	G,T	1331.29	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.491;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.66;MQ0=0;MQRankSum=-0.443;QD=30.96;ReadPosRankSum=1.249;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/2:1,19,23:43:99:1506,809,783,668,0,633
+chr1	81634	.	A	G	2035.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=30.65;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2064,154,0
+chr1	81638	.	C	T	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.96;MQ0=0;MQRankSum=-2.108;QD=15.37;ReadPosRankSum=-1.219;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,26:53:99:843,0,879
+chr1	81650	.	C	T	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;DP=59;Dels=0.00;FS=0.989;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=51.91;MQ0=0;MQRankSum=1.677;QD=16.42;ReadPosRankSum=0.600;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:28,31:59:99:997,0,893
+chr1	81655	.	A	T	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=50.82;MQ0=1;MQRankSum=-1.189;QD=14.60;ReadPosRankSum=-0.497;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,26:56:99:846,0,959
+chr1	81660	.	C	G	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=50.26;MQ0=1;MQRankSum=-1.272;QD=14.65;ReadPosRankSum=-0.667;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:29,26:55:99:834,0,917
+chr1	81676	.	T	A	1209.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=37;Dels=0.03;FS=3.136;HaplotypeScore=2.9325;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=1;MQRankSum=-1.733;QD=32.70;ReadPosRankSum=1.634;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:1,35:36:65:1238,65,0
+chr1	81684	.	T	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;DP=37;Dels=0.00;FS=3.014;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=45.14;MQ0=1;MQRankSum=-3.850;QD=11.40;ReadPosRankSum=1.572;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,16:37:99:450,0,653
+chr1	81688	.	G	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;DP=37;Dels=0.00;FS=3.014;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.14;MQ0=1;MQRankSum=-3.947;QD=10.94;ReadPosRankSum=2.054;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,16:37:99:433,0,686
+chr1	81689	.	T	C	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DP=36;Dels=0.00;FS=2.958;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.11;MQ0=1;MQRankSum=-3.750;QD=10.77;ReadPosRankSum=1.950;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:20,16:36:99:416,0,612
+chr1	81693	.	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=38;Dels=0.00;FS=4.815;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.42;MQ0=1;MQRankSum=-3.581;QD=12.68;ReadPosRankSum=1.143;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:20,18:38:99:510,0,642
+chr1	81698	.	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=1;QD=30.86;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1336,105,0
+chr1	81707	.	T	C	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DP=47;Dels=0.00;FS=1.176;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.19;MQ0=1;MQRankSum=3.636;QD=11.87;ReadPosRankSum=-0.268;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:28,19:47:99:586,0,810
+chr1	81724	.	T	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;DP=44;Dels=0.00;FS=1.986;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=46.23;MQ0=1;MQRankSum=-0.378;QD=1.27;ReadPosRankSum=0.609;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:36,8:44:84:84,0,1258
+chr1	81739	.	G	A	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=46.48;MQ0=1;MQRankSum=-2.983;QD=19.66;ReadPosRankSum=0.454;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:14,28:42:99:854,0,419
+chr1	81751	.	G	A	1532.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=26.66;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1561,114,0
+chr1	81778	.	A	G	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.868;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.08;MQ0=3;MQRankSum=0.964;QD=8.94;ReadPosRankSum=2.043;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,21:52:99:493,0,1122
+chr1	81794	.	A	C	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.07;MQ0=3;MQRankSum=0.029;QD=18.77;ReadPosRankSum=-0.488;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:24,30:54:99:1042,0,496
+chr1	81819	.	A	G	1360.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=3;QD=31.65;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1389,105,0
+chr1	81854	.	T	C	1085.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=30.67;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1114,84,0
+chr1	81866	.	G	C	932.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=30.61;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:72:961,72,0
+chr1	81879	.	A	G	1084.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=34.99;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,30:31:84:1113,84,0
+chr1	81881	.	G	A	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=46.68;MQ0=0;MQRankSum=-0.097;QD=21.21;ReadPosRankSum=2.511;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:12,20:32:99:707,0,302
+chr1	81889	.	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=49.01;MQ0=0;MQRankSum=-0.851;QD=9.17;ReadPosRankSum=-1.311;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,13:34:99:340,0,730
+chr1	81914	.	C	T	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=51.95;MQ0=0;MQRankSum=0.503;QD=17.79;ReadPosRankSum=-3.004;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:18,22:40:99:740,0,520
+chr1	81927	.	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=28.57;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1594,123,0
+chr1	81935	.	A	T	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DP=43;Dels=0.00;FS=1.237;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.74;MQ0=0;MQRankSum=-0.335;QD=12.44;ReadPosRankSum=1.279;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,17:43:99:563,0,831
+chr1	81947	.	T	A	1397.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=30.54;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1426,108,0
+chr1	81948	.	G	C	1380.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=31.38;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1409,105,0
+chr1	81951	.	T	C	1385.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.32;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,37:38:99:1414,105,0
+chr1	81995	.	G	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=-2.114;QD=12.73;ReadPosRankSum=0.458;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:22,16:38:99:512,0,740
+chr1	82003	.	A	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;DP=37;Dels=0.00;FS=1.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-3.877;QD=9.37;ReadPosRankSum=3.261;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,12:37:99:375,0,858
+chr1	82004	.	A	G	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.320;DP=37;Dels=0.00;FS=1.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-3.910;QD=9.51;ReadPosRankSum=3.326;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,12:37:99:380,0,857
+chr1	82005	.	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;DP=37;Dels=0.00;FS=1.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-3.358;QD=9.53;ReadPosRankSum=3.293;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,12:37:99:381,0,863
+chr1	82009	.	T	C	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.836;DP=36;Dels=0.00;FS=3.018;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.40;MQ0=0;MQRankSum=-3.574;QD=10.05;ReadPosRankSum=2.970;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:24,12:36:99:390,0,731
+chr1	82011	.	G	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.763;DP=35;Dels=0.00;FS=1.421;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.35;MQ0=0;MQRankSum=-3.736;QD=10.42;ReadPosRankSum=2.763;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:23,12:35:99:393,0,756
+chr1	82025	.	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;DP=40;Dels=0.00;FS=4.364;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=0;MQRankSum=-4.604;QD=16.92;ReadPosRankSum=0.244;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:19,21:40:99:705,0,617
+chr1	82036	.	A	G	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;DP=38;Dels=0.00;FS=4.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.13;MQ0=0;MQRankSum=-4.538;QD=19.31;ReadPosRankSum=-0.103;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:16,22:38:99:762,0,463
+chr1	82050	.	C	T	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;DP=35;Dels=0.00;FS=10.665;HaplotypeScore=49.2919;MLEAC=1;MLEAF=0.500;MQ=54.70;MQ0=0;MQRankSum=-4.080;QD=21.25;ReadPosRankSum=-1.280;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:13,22:35:99:772,0,401
+chr1	82064	.	T	C	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;DP=31;Dels=0.00;FS=8.272;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=-4.343;QD=19.41;ReadPosRankSum=1.501;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:13,18:31:99:630,0,427
+chr1	82080	.	C	T	1151.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=29.06;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1180,87,0
+chr1	82081	.	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=27.94;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1172,87,0
+chr1	82082	.	A	G	1146.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=28.52;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1175,87,0
+chr1	82096	.	T	A	1128.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=29.16;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:93:1157,93,0
+chr1	82126	.	G	A	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DP=37;Dels=0.00;FS=3.009;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-1.977;QD=16.02;ReadPosRankSum=-0.169;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:16,21:37:99:621,0,501
+chr1	82156	.	G	A	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=-0.011;QD=14.34;ReadPosRankSum=0.990;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:24,23:47:99:702,0,724
+chr1	82158	.	T	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=0.352;QD=13.81;ReadPosRankSum=1.638;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:705,0,824
+chr1	82161	.	C	G	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=-0.131;QD=16.63;ReadPosRankSum=-1.578;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:843,0,731
+chr1	82181	.	T	C	1791.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=33.17;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1820,138,0
+chr1	82212	.	G	A	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;DP=55;Dels=0.00;FS=1.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.87;MQ0=0;MQRankSum=-0.113;QD=17.12;ReadPosRankSum=0.788;EFF=UPSTREAM(MODIFIER||||Cc01g00050|mRNA||GSCOCT00012435001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,34:55:99:970,0,654
+chr1	82270	.	A	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;DP=48;Dels=0.00;FS=7.059;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=-0.969;QD=11.54;ReadPosRankSum=0.224;EFF=UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,18:48:99:582,0,945
+chr1	82315	.	C	T	1935.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=33.36;EFF=UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1964,150,0
+chr1	82352	.	G	C	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=0.780;QD=14.59;ReadPosRankSum=0.523;EFF=UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:28,24:52:99:787,0,872
+chr1	82367	.	G	A	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;DP=60;Dels=0.00;FS=0.988;HaplotypeScore=2.7001;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=0.509;QD=15.13;ReadPosRankSum=-0.630;EFF=UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,28:60:99:936,0,959
+chr1	82385	.	G	T	12.99	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.579;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=81.3181;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=-0.230;QD=0.21;ReadPosRankSum=-3.378;EFF=UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:55,6:62:41:41,0,1896
+chr1	82434	.	T	C	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=0;MQRankSum=-1.087;QD=14.15;ReadPosRankSum=1.842;EFF=UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:29,23:52:99:764,0,957
+chr1	82440	.	G	C	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;DP=49;Dels=0.00;FS=1.092;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=0.955;QD=17.55;ReadPosRankSum=-1.920;EFF=UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:888,0,719
+chr1	82482	.	G	A	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;DP=51;Dels=0.00;FS=1.064;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=57.36;MQ0=1;MQRankSum=-1.757;QD=14.52;ReadPosRankSum=-1.194;EFF=UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,24:51:99:769,0,899
+chr1	82487	.	T	A	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DP=50;Dels=0.00;FS=1.101;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=1;MQRankSum=-0.850;QD=15.32;ReadPosRankSum=-0.470;EFF=UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,25:50:99:794,0,848
+chr1	82613	.	T	C	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.19;MQ0=1;MQRankSum=-1.183;QD=12.44;ReadPosRankSum=0.218;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:28,24:52:99:675,0,964
+chr1	82614	.	A	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.467;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.19;MQ0=1;MQRankSum=-0.539;QD=12.44;ReadPosRankSum=0.331;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:28,24:52:99:675,0,934
+chr1	82616	.	G	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.27;MQ0=1;MQRankSum=-2.266;QD=11.86;ReadPosRankSum=0.405;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:29,23:53:99:657,0,973
+chr1	82648	.	A	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;DP=45;Dels=0.00;FS=5.254;HaplotypeScore=6.9393;MLEAC=1;MLEAF=0.500;MQ=52.78;MQ0=3;MQRankSum=-4.177;QD=3.93;ReadPosRankSum=-0.286;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:33,12:45:99:205,0,1095
+chr1	82650	.	T	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;DP=43;Dels=0.00;FS=5.772;HaplotypeScore=4.9694;MLEAC=1;MLEAF=0.500;MQ=52.57;MQ0=3;MQRankSum=-4.146;QD=2.51;ReadPosRankSum=0.292;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:33,10:43:99:136,0,1090
+chr1	82656	.	G	A	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.9694;MLEAC=1;MLEAF=0.500;MQ=52.02;MQ0=3;MQRankSum=4.699;QD=22.29;ReadPosRankSum=0.901;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:14,27:41:99:942,0,189
+chr1	82658	.	T	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DP=42;Dels=0.00;FS=3.333;HaplotypeScore=4.9694;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=3;MQRankSum=-4.050;QD=2.66;ReadPosRankSum=-1.617;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,12:42:99:140,0,1017
+chr1	82668	.	A	C	1112.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=3;QD=30.91;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:90:1141,90,0
+chr1	82690	.	G	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=40;Dels=0.00;FS=5.301;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=56.01;MQ0=1;MQRankSum=-2.041;QD=8.64;ReadPosRankSum=-2.488;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,14:40:99:374,0,898
+chr1	82792	.	T	A	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=1;MQRankSum=0.289;QD=19.32;ReadPosRankSum=-0.834;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:16,21:37:99:743,0,494
+chr1	82795	.	T	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=1;MQRankSum=-0.114;QD=11.86;ReadPosRankSum=1.314;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:22,15:37:99:467,0,769
+chr1	82814	.	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=1;MQRankSum=0.958;QD=8.48;ReadPosRankSum=0.707;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,13:39:99:359,0,871
+chr1	82877	.	T	C	1238.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.481;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5775;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.385;QD=34.41;ReadPosRankSum=1.444;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:1,35:36:67:1267,67,0
+chr1	82878	.	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;DP=36;Dels=0.00;FS=2.928;HaplotypeScore=2.5775;MLEAC=1;MLEAF=0.500;MQ=58.51;MQ0=0;MQRankSum=-0.111;QD=15.72;ReadPosRankSum=-2.244;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:16,20:36:99:594,0,499
+chr1	82887	.	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;DP=36;Dels=0.00;FS=1.344;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQ0=0;MQRankSum=-0.257;QD=11.41;ReadPosRankSum=2.246;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,15:36:99:439,0,686
+chr1	82936	.	A	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DP=28;Dels=0.00;FS=10.544;HaplotypeScore=8.7318;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=-0.839;QD=7.03;ReadPosRankSum=1.551;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:20,8:28:99:225,0,697
+chr1	82937	.	G	A	1059.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=7.7653;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=29.88;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1088,84,0
+chr1	82946	.	A	G	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;DP=34;Dels=0.00;FS=20.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=1.942;QD=14.52;ReadPosRankSum=1.353;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:15,19:34:99:522,0,487
+chr1	82981	.	A	C	1508.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=33.7746;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=32.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1537,117,0
+chr1	83013	.	A	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DP=48;Dels=0.00;FS=46.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=-1.792;QD=11.70;ReadPosRankSum=0.211;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:29,19:48:99:590,0,915
+chr1	83024	.	A	G	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;DP=42;Dels=0.00;FS=42.658;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=1;MQRankSum=-2.045;QD=10.57;ReadPosRankSum=0.468;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,17:42:99:472,0,804
+chr1	83033	.	A	G	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;DP=39;Dels=0.00;FS=31.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.45;MQ0=1;MQRankSum=-3.862;QD=6.79;ReadPosRankSum=2.157;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,12:39:99:293,0,843
+chr1	83044	.	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;DP=37;Dels=0.00;FS=27.416;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=54.13;MQ0=1;MQRankSum=-4.362;QD=6.40;ReadPosRankSum=2.278;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,11:37:99:265,0,839
+chr1	83083	.	T	C	872.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=27.22;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:66:901,66,0
+chr1	83091	.	A	G	855.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=28.70;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,22:22:66:884,66,0
+chr1	83162	.	C	T	653.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UPSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:51:682,51,0
+chr1	83337	.	A	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.48;MQ0=1;MQRankSum=-2.646;QD=10.34;ReadPosRankSum=-1.164;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_5_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|Exon_chr1_83279_83401)	GT:AD:DP:GQ:PL	0/1:9,8:17:99:204,0,330
+chr1	83398	.	G	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.9845;MLEAC=1;MLEAF=0.500;MQ=47.10;MQ0=1;MQRankSum=0.778;QD=6.32;ReadPosRankSum=2.333;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_5_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|Exon_chr1_83279_83401)	GT:AD:DP:GQ:PL	0/1:11,4:15:99:123,0,311
+chr1	83404	.	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.9845;MLEAC=1;MLEAF=0.500;MQ=45.65;MQ0=1;MQRankSum=-1.157;QD=4.34;ReadPosRankSum=-1.466;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:9,5:14:89:89,0,317
+chr1	83532	.	G	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DP=30;Dels=0.00;FS=5.946;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.56;MQ0=2;MQRankSum=-3.188;QD=6.56;ReadPosRankSum=1.894;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_5_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|Exon_chr1_83509_83569)	GT:AD:DP:GQ:PL	0/1:18,12:30:99:225,0,597
+chr1	83605	.	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DP=24;Dels=0.00;FS=7.799;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.85;MQ0=0;MQRankSum=-2.167;QD=2.62;ReadPosRankSum=1.233;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:18,6:24:91:91,0,606
+chr1	83629	.	T	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;DP=19;Dels=0.00;FS=4.713;HaplotypeScore=1.7880;MLEAC=1;MLEAF=0.500;MQ=41.28;MQ0=0;MQRankSum=-2.268;QD=2.04;ReadPosRankSum=-1.991;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:14,5:19:67:67,0,465
+chr1	83691	.	T	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;DP=35;Dels=0.00;FS=8.175;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=42.05;MQ0=0;MQRankSum=-0.020;QD=5.51;ReadPosRankSum=-1.552;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,8:35:99:221,0,947
+chr1	83704	.	C	T	1319.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=1;QD=32.99;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1348,102,0
+chr1	83837	.	G	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;DP=30;Dels=0.00;FS=14.239;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.28;MQ0=2;MQRankSum=-3.738;QD=5.23;ReadPosRankSum=-0.788;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),SYNONYMOUS_CODING(LOW|SILENT|ttG/ttA|L4|Cc01g00060|mRNA||GSCOCT00012434001|Exon_chr1_83730_84064)	GT:AD:DP:GQ:PL	0/1:20,10:30:99:185,0,667
+chr1	84090	.	G	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.8663;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=0.440;QD=13.44;ReadPosRankSum=-0.793;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:21,17:38:99:539,0,732
+chr1	84156	.	C	T	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=56;Dels=0.00;FS=6.157;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=-1.818;QD=22.16;ReadPosRankSum=0.463;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:17,39:56:99:1269,0,542
+chr1	84243	.	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1573,120,0
+chr1	84266	.	A	C	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;DP=41;Dels=0.00;FS=2.837;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.392;QD=11.12;ReadPosRankSum=-0.203;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,15:41:99:484,0,881
+chr1	84467	.	C	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;DP=48;Dels=0.00;FS=5.874;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=-0.321;QD=14.87;ReadPosRankSum=1.542;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,22:48:99:742,0,877
+chr1	84548	.	G	T	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;DP=61;Dels=0.00;FS=3.670;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=2.402;QD=16.54;ReadPosRankSum=1.854;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:31,30:61:99:1037,0,988
+chr1	84596	.	C	T	2308.77	.	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.89;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2337,178,0
+chr1	84601	.	C	T	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270;DP=65;Dels=0.00;FS=2.135;HaplotypeScore=1.9664;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=1.172;QD=19.63;ReadPosRankSum=-0.797;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:26,39:65:99:1304,0,773
+chr1	84805	.	A	G	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=0.505;QD=19.46;ReadPosRankSum=0.307;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),SYNONYMOUS_CODING(LOW|SILENT|tcA/tcG|S113|Cc01g00060|mRNA||GSCOCT00012434001|Exon_chr1_84706_84991)	GT:AD:DP:GQ:PL	0/1:20,30:50:99:1001,0,641
+chr1	84858	.	A	C	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;DP=42;Dels=0.00;FS=8.832;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-1.322;QD=16.95;ReadPosRankSum=1.876;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAa/aCa|K131T|Cc01g00060|mRNA||GSCOCT00012434001|Exon_chr1_84706_84991)	GT:AD:DP:GQ:PL	0/1:20,22:42:99:740,0,673
+chr1	84868	.	C	T	1590.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=28.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),SYNONYMOUS_CODING(LOW|SILENT|gtC/gtT|V134|Cc01g00060|mRNA||GSCOCT00012434001|Exon_chr1_84706_84991)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1619,123,0
+chr1	84880	.	G	A	1477.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.91;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),SYNONYMOUS_CODING(LOW|SILENT|ctG/ctA|L138|Cc01g00060|mRNA||GSCOCT00012434001|Exon_chr1_84706_84991)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1506,114,0
+chr1	84886	.	A	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;DP=39;Dels=0.00;FS=1.261;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.521;QD=14.58;ReadPosRankSum=-0.775;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),SYNONYMOUS_CODING(LOW|SILENT|gtA/gtG|V140|Cc01g00060|mRNA||GSCOCT00012434001|Exon_chr1_84706_84991)	GT:AD:DP:GQ:PL	0/1:21,18:39:99:597,0,712
+chr1	85016	.	G	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.347;QD=17.45;ReadPosRankSum=-0.194;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,30:55:99:988,0,847
+chr1	85055	.	A	G	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DP=59;Dels=0.00;FS=7.450;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=0.599;QD=16.34;ReadPosRankSum=0.083;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:30,29:59:99:992,0,999
+chr1	85064	.	T	C	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DP=54;Dels=0.00;FS=3.998;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=1.488;QD=14.61;ReadPosRankSum=0.311;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:27,27:54:99:817,0,887
+chr1	85114	.	A	G	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;DP=47;Dels=0.00;FS=2.488;HaplotypeScore=1.9662;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=-1.011;QD=16.40;ReadPosRankSum=-0.947;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:23,24:47:99:799,0,742
+chr1	85206	.	A	G	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=-0.412;QD=14.65;ReadPosRankSum=-1.338;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:28,27:55:99:834,0,932
+chr1	85257	.	C	T	2136.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=25.00;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,55:56:99:2165,163,0
+chr1	85259	.	T	C	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=26.7919;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.070;QD=17.50;ReadPosRankSum=0.552;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:28,30:58:99:1043,0,924
+chr1	85307	.	G	T	2188.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.43;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),INTRON(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2217,166,0
+chr1	85388	.	T	C	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;DP=56;Dels=0.00;FS=2.338;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=0.972;QD=17.91;ReadPosRankSum=2.060;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:25,31:56:99:1031,0,826
+chr1	85403	.	A	G	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DP=53;Dels=0.00;FS=3.822;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.045;QD=20.00;ReadPosRankSum=1.525;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:22,31:53:99:1088,0,713
+chr1	85446	.	T	G	2073.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.80;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2102,157,0
+chr1	85454	.	C	A	1996.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.82;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2025,150,0
+chr1	85460	.	A	C	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;DP=48;Dels=0.00;FS=4.180;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.445;QD=17.87;ReadPosRankSum=-2.121;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:22,26:48:99:886,0,741
+chr1	85552	.	A	C	1841.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.742;QD=31.35;ReadPosRankSum=-0.035;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1870,141,0
+chr1	85658	.	T	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.903;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=-0.933;QD=12.97;ReadPosRankSum=2.850;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:23,18:41:99:560,0,680
+chr1	85709	.	T	A	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;DP=30;Dels=0.00;FS=3.431;HaplotypeScore=15.9845;MLEAC=1;MLEAF=0.500;MQ=58.03;MQ0=0;MQRankSum=-0.209;QD=17.76;ReadPosRankSum=1.590;EFF=DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|)	GT:AD:DP:GQ:PL	0/1:13,17:30:99:561,0,349
+chr1	85779	.	A	G	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;DP=32;Dels=0.00;FS=10.207;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=0.042;QD=6.27;ReadPosRankSum=0.922;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,9:32:99:229,0,795
+chr1	85837	.	A	T	1322.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.23;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1351,102,0
+chr1	85866	.	G	A	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=15.4975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.788;QD=15.93;ReadPosRankSum=-1.286;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:15,15:30:99:506,0,472
+chr1	85928	.	G	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DP=31;Dels=0.00;FS=1.566;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.021;QD=22.54;ReadPosRankSum=1.416;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:10,21:31:99:727,0,300
+chr1	85964	.	T	C	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;DP=32;Dels=0.00;FS=3.848;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.936;QD=26.59;ReadPosRankSum=-0.065;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:8,24:32:99:879,0,222
+chr1	85983	.	T	C	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.457;QD=24.67;ReadPosRankSum=-0.196;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:9,22:31:99:793,0,280
+chr1	85984	.	A	T	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.413;QD=24.19;ReadPosRankSum=-0.326;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:9,22:31:99:778,0,283
+chr1	86057	.	T	A	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=1.117;QD=16.34;ReadPosRankSum=-0.819;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,24:47:99:796,0,802
+chr1	86096	.	T	C	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;DP=47;Dels=0.00;FS=6.396;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQ0=0;MQRankSum=1.171;QD=18.42;ReadPosRankSum=0.952;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:18,29:47:99:894,0,583
+chr1	86197	.	A	G	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=0.775;QD=15.83;ReadPosRankSum=1.413;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:19,18:37:99:614,0,592
+chr1	86283	.	T	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DP=81;Dels=0.00;FS=11.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.22;MQ0=1;MQRankSum=-1.581;QD=7.98;ReadPosRankSum=-5.926;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:45,36:81:99:675,0,1045
+chr1	86295	.	G	A	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=57.14;MQ0=1;MQRankSum=-0.694;QD=2.69;ReadPosRankSum=-1.111;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:61,17:79:99:241,0,1690
+chr1	86334	.	C	T	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=1;MQRankSum=-1.600;QD=18.65;ReadPosRankSum=0.680;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,29:49:99:942,0,629
+chr1	86368	.	T	C	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.010;QD=17.87;ReadPosRankSum=-0.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,26:49:99:904,0,769
+chr1	86487	.	C	T	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;DP=60;Dels=0.00;FS=3.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=-2.588;QD=18.93;ReadPosRankSum=1.410;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,34:60:99:1164,0,811
+chr1	86494	.	G	A	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;DP=62;Dels=0.00;FS=1.012;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-1.077;QD=11.83;ReadPosRankSum=-0.282;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:38,24:62:99:762,0,1311
+chr1	86710	.	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.952;QD=15.58;ReadPosRankSum=-1.135;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:21,20:41:99:667,0,725
+chr1	86780	.	T	C	1962.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.93;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1991,150,0
+chr1	86783	.	T	C	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;DP=51;Dels=0.00;FS=1.083;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.612;QD=15.98;ReadPosRankSum=0.141;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,25:51:99:843,0,891
+chr1	86812	.	C	G	2201.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=28.38;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2230,172,0
+chr1	86874	.	T	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DP=46;Dels=0.00;FS=2.444;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=0.587;QD=18.63;ReadPosRankSum=0.211;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,26:46:99:885,0,605
+chr1	86928	.	A	T	1814.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.24;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1843,138,0
+chr1	86945	.	C	T	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.651;QD=15.59;ReadPosRankSum=-1.292;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,23:49:99:792,0,917
+chr1	87016	.	C	T	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;DP=53;Dels=0.00;FS=2.380;HaplotypeScore=46.7458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.134;QD=15.01;ReadPosRankSum=0.597;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,25:53:99:824,0,910
+chr1	87161	.	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=15.2776;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.61;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1586,117,0
+chr1	87182	.	A	G	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=65.7226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.562;QD=16.77;ReadPosRankSum=-1.948;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:19,22:41:99:716,0,647
+chr1	87257	.	T	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;DP=42;Dels=0.00;FS=2.756;HaplotypeScore=3.9986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.202;QD=14.71;ReadPosRankSum=-0.455;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,19:42:99:646,0,809
+chr1	87282	.	C	T	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;DP=42;Dels=0.00;FS=11.850;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.581;QD=17.97;ReadPosRankSum=-0.708;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:19,23:42:99:783,0,641
+chr1	87399	.	T	A	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;DP=43;Dels=0.00;FS=4.388;HaplotypeScore=1.8666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.426;QD=15.41;ReadPosRankSum=0.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),DOWNSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,20:43:99:691,0,818
+chr1	87964	.	T	C	1652.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=31.86;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),SYNONYMOUS_CODING(LOW|SILENT|agA/agG|R2079|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_87910_88146)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1681,126,0
+chr1	88214	.	A	G	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.4710;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=1.316;QD=17.04;ReadPosRankSum=2.984;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:21,23:45:99:795,0,623
+chr1	88242	.	A	C	1458.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=31.03;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1487,111,0
+chr1	88243	.	G	A	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DP=40;Dels=0.00;FS=2.817;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=0.465;QD=19.67;ReadPosRankSum=-2.818;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:17,23:40:99:815,0,487
+chr1	88460	.	C	T	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DP=41;Dels=0.00;FS=4.561;HaplotypeScore=1.8666;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=0.874;QD=15.80;ReadPosRankSum=-0.143;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:21,20:41:99:676,0,700
+chr1	88534	.	T	C	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;DP=50;Dels=0.00;FS=13.391;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=0.545;QD=14.54;ReadPosRankSum=-1.363;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),SYNONYMOUS_CODING(LOW|SILENT|caA/caG|Q1964|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_88510_88890)	GT:AD:DP:GQ:PL	0/1:27,23:50:99:755,0,913
+chr1	88912	.	A	C	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=0;MQRankSum=-1.268;QD=13.31;ReadPosRankSum=-0.971;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,20:45:99:627,0,862
+chr1	88959	.	C	T	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DP=56;Dels=0.00;FS=9.559;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=-0.590;QD=15.78;ReadPosRankSum=0.574;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,27:56:99:912,0,1002
+chr1	88961	.	C	G	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;DP=58;Dels=0.00;FS=11.723;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=0.661;QD=17.50;ReadPosRankSum=-0.521;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,30:58:99:1043,0,950
+chr1	88987	.	A	G	2405.77	.	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=30.69;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2434,184,0
+chr1	89344	.	G	C	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;DP=61;Dels=0.00;FS=5.322;HaplotypeScore=2.9937;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=1;MQRankSum=-0.052;QD=16.77;ReadPosRankSum=-0.304;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,33:61:99:1051,0,895
+chr1	89418	.	A	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=0.521;QD=18.45;ReadPosRankSum=0.118;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),SYNONYMOUS_CODING(LOW|SILENT|ggT/ggA|G1793|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_89391_89495)	GT:AD:DP:GQ:PL	0/1:19,25:44:99:840,0,514
+chr1	89522	.	A	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;DP=45;Dels=0.00;FS=11.478;HaplotypeScore=103.5819;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=-0.517;QD=13.15;ReadPosRankSum=-1.321;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,19:45:99:620,0,881
+chr1	89531	.	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=114.0798;MLEAC=1;MLEAF=0.500;MQ=56.96;MQ0=1;MQRankSum=-0.041;QD=1.14;ReadPosRankSum=-1.853;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:41,9:50:85:85,0,1381
+chr1	89635	.	T	G	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DP=56;Dels=0.00;FS=7.797;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.737;QD=18.12;ReadPosRankSum=0.339;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aat/Cat|N1762H|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_89618_89905)	GT:AD:DP:GQ:PL	0/1:24,32:56:99:1043,0,749
+chr1	89720	.	T	C	1891.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=30.77;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),SYNONYMOUS_CODING(LOW|SILENT|caA/caG|Q1733|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_89618_89905)	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1920,144,0
+chr1	89745	.	A	G	1759.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTg/aCg|M1725T|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_89618_89905)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1788,135,0
+chr1	89792	.	G	A	2016.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.01;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),SYNONYMOUS_CODING(LOW|SILENT|gtC/gtT|V1709|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_89618_89905)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2045,159,0
+chr1	89954	.	T	C	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;DP=64;Dels=0.00;FS=2.069;HaplotypeScore=2.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.884;QD=19.18;ReadPosRankSum=1.359;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:27,37:64:99:1256,0,894
+chr1	90005	.	A	G	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DP=58;Dels=0.00;FS=3.623;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.523;QD=19.84;ReadPosRankSum=0.502;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,33:58:99:1179,0,842
+chr1	90289	.	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.69;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gca/Aca|A1597T|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_90065_90416)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1830,141,0
+chr1	90303	.	A	G	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;DP=46;Dels=0.00;FS=5.030;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.388;QD=13.49;ReadPosRankSum=0.720;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTa/aCa|I1592T|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_90065_90416)	GT:AD:DP:GQ:PL	0/1:26,20:46:99:649,0,883
+chr1	90520	.	C	T	496.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;DP=21;Dels=0.00;FS=7.375;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=56.05;MQ0=1;MQRankSum=-0.693;QD=23.66;ReadPosRankSum=2.205;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:3,18:21:18:525,0,18
+chr1	90521	.	C	T	488.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;DP=21;Dels=0.00;FS=8.316;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=56.05;MQ0=1;MQRankSum=-1.197;QD=23.24;ReadPosRankSum=2.205;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:3,18:21:12:516,0,12
+chr1	90525	.	C	T	577.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=43.4929;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=1;QD=30.41;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:1,18:19:51:606,51,0
+chr1	90567	.	G	A	583.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=15.0334;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=34.34;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:48:612,48,0
+chr1	90588	.	A	G	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1875;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=1.768;QD=8.06;ReadPosRankSum=-0.731;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,9:29:99:262,0,686
+chr1	90590	.	T	C	1086.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1875;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=24.80;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1115,84,0
+chr1	90591	.	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;DP=30;Dels=0.00;FS=1.987;HaplotypeScore=3.1875;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=0.387;QD=21.59;ReadPosRankSum=0.732;EFF=DOWNSTREAM(MODIFIER||||Cc01g00060|mRNA||GSCOCT00012434001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:11,19:30:99:676,0,304
+chr1	90977	.	G	T	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999;DP=45;Dels=0.00;FS=4.453;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-0.857;QD=13.48;ReadPosRankSum=-1.633;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,20:45:99:635,0,845
+chr1	90985	.	T	C	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;DP=47;Dels=0.00;FS=4.385;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=1.160;QD=12.29;ReadPosRankSum=0.228;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,19:47:99:606,0,909
+chr1	91106	.	T	C	1596.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1625,120,0
+chr1	91526	.	G	C	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DP=42;Dels=0.00;FS=2.865;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.065;QD=12.14;ReadPosRankSum=-0.842;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,16:42:99:538,0,882
+chr1	91614	.	A	C	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.445;QD=17.90;ReadPosRankSum=0.735;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,30:55:99:1013,0,821
+chr1	91617	.	T	A	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.288;QD=18.19;ReadPosRankSum=1.043;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,30:56:99:1047,0,834
+chr1	91650	.	C	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;DP=42;Dels=0.00;FS=1.831;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.893;QD=0.88;ReadPosRankSum=-2.796;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caG/caT|Q1346H|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_91645_91760)	GT:AD:DP:GQ:PL	0/1:37,5:42:65:65,0,1325
+chr1	91722	.	A	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;DP=50;Dels=0.00;FS=4.367;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.676;EFF=SYNONYMOUS_CODING(LOW|SILENT|ggT/ggA|G1322|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_91645_91760)	GT:AD:DP:GQ:PL	0/1:33,17:50:99:532,0,996
+chr1	91774	.	G	A	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;DP=60;Dels=0.00;FS=1.043;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=0.765;QD=13.25;ReadPosRankSum=-1.230;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,25:60:99:823,0,1195
+chr1	91973	.	C	T	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;DP=42;Dels=0.00;FS=8.623;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.239;QD=15.71;ReadPosRankSum=-1.901;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcG/gcA|A1269|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_91853_92230)	GT:AD:DP:GQ:PL	0/1:20,22:42:99:688,0,658
+chr1	91976	.	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;DP=46;Dels=0.00;FS=6.133;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.277;QD=12.97;ReadPosRankSum=2.338;EFF=SYNONYMOUS_CODING(LOW|SILENT|tgC/tgT|C1268|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_91853_92230)	GT:AD:DP:GQ:PL	0/1:26,20:46:99:625,0,846
+chr1	92011	.	A	C	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DP=56;Dels=0.00;FS=7.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.813;QD=19.53;ReadPosRankSum=1.995;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tca/Gca|S1257A|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_91853_92230)	GT:AD:DP:GQ:PL	0/1:24,32:56:99:1122,0,788
+chr1	92186	.	G	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;DP=35;Dels=0.00;FS=5.368;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.083;QD=16.51;ReadPosRankSum=-0.083;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcC/tcT|S1198|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_91853_92230)	GT:AD:DP:GQ:PL	0/1:16,19:35:99:606,0,541
+chr1	92279	.	A	G	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DP=41;Dels=0.00;FS=6.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.090;QD=18.92;ReadPosRankSum=0.775;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:18,23:41:99:804,0,592
+chr1	92300	.	C	G	1407.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.55;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1436,108,0
+chr1	92325	.	T	C	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;DP=44;Dels=0.00;FS=6.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.692;QD=16.40;ReadPosRankSum=-0.951;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:22,22:44:99:750,0,740
+chr1	92362	.	A	G	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=-0.214;QD=14.48;ReadPosRankSum=0.097;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:27,23:50:99:752,0,920
+chr1	92420	.	A	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;DP=46;Dels=0.00;FS=6.635;HaplotypeScore=12.9977;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=0.404;QD=10.39;ReadPosRankSum=0.519;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,16:46:99:506,0,1054
+chr1	92426	.	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DP=42;Dels=0.00;FS=9.664;HaplotypeScore=12.9977;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-0.680;QD=9.99;ReadPosRankSum=0.494;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,14:42:99:448,0,1021
+chr1	92459	.	G	A	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;DP=41;Dels=0.00;FS=2.858;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-0.521;QD=11.87;ReadPosRankSum=-0.174;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,16:41:99:515,0,892
+chr1	92463	.	G	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;DP=43;Dels=0.00;FS=2.743;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=-0.406;QD=12.99;ReadPosRankSum=-0.529;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,18:43:99:587,0,880
+chr1	92529	.	T	A	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=1.253;QD=16.77;ReadPosRankSum=0.503;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,28:57:99:984,0,918
+chr1	92647	.	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=-0.840;QD=9.40;ReadPosRankSum=0.680;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,14:42:99:423,0,976
+chr1	92758	.	T	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;DP=53;Dels=0.00;FS=3.955;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=0.930;QD=10.18;ReadPosRankSum=1.380;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,18:53:99:568,0,1136
+chr1	92787	.	A	G	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=68;Dels=0.00;FS=3.335;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=0.142;QD=13.50;ReadPosRankSum=0.377;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:38,30:68:99:946,0,1223
+chr1	92856	.	G	C	2242.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=1;QD=29.11;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2271,172,0
+chr1	92881	.	G	T	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;DP=57;Dels=0.00;FS=9.783;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=1;MQRankSum=1.051;QD=18.15;ReadPosRankSum=-0.803;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,33:57:99:1063,0,740
+chr1	92887	.	A	G	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DP=56;Dels=0.00;FS=2.506;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=1;MQRankSum=0.126;QD=15.62;ReadPosRankSum=0.008;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,30:56:99:903,0,715
+chr1	92906	.	T	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=64;Dels=0.00;FS=2.137;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=2;MQRankSum=1.450;QD=13.48;ReadPosRankSum=0.728;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:34,30:64:99:891,0,1127
+chr1	93051	.	G	C	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DP=67;Dels=0.00;FS=0.945;HaplotypeScore=2.9966;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=1.436;QD=19.41;ReadPosRankSum=-0.576;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1329,0,959
+chr1	93126	.	T	G	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;DP=54;Dels=0.00;FS=5.804;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-0.349;QD=21.83;ReadPosRankSum=-0.099;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,34:54:99:1207,0,605
+chr1	93129	.	C	T	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;DP=54;Dels=0.00;FS=5.804;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=0.905;QD=22.01;ReadPosRankSum=0.242;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,34:54:99:1217,0,604
+chr1	93143	.	G	C	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DP=51;Dels=0.00;FS=2.448;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.287;QD=11.86;ReadPosRankSum=-1.357;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,20:51:99:633,0,1071
+chr1	93221	.	G	C	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=59;Dels=0.00;FS=0.998;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-0.371;QD=16.28;ReadPosRankSum=0.387;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,29:59:99:989,0,965
+chr1	93235	.	G	A	1138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;DP=63;Dels=0.00;FS=2.089;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=1.110;QD=18.08;ReadPosRankSum=-0.779;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,34:63:99:1167,0,900
+chr1	93270	.	T	C	2111.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=30.32;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2140,160,0
+chr1	93280	.	T	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.487;DP=52;Dels=0.00;FS=4.010;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=1.194;QD=13.11;ReadPosRankSum=3.543;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,21:52:99:710,0,1066
+chr1	93282	.	G	C	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.616;DP=49;Dels=0.00;FS=4.055;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=0.636;QD=14.02;ReadPosRankSum=3.222;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,21:49:99:715,0,961
+chr1	93283	.	G	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;DP=50;Dels=0.00;FS=2.447;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=-1.065;QD=14.36;ReadPosRankSum=2.746;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,22:50:99:746,0,976
+chr1	93306	.	A	T	2098.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=32.01;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2127,160,0
+chr1	93333	.	C	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;DP=53;Dels=0.00;FS=5.940;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=0.454;QD=15.32;ReadPosRankSum=0.330;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,25:53:99:840,0,924
+chr1	93352	.	T	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=57;Dels=0.00;FS=11.817;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=-0.745;QD=15.03;ReadPosRankSum=1.402;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,26:57:99:885,0,1090
+chr1	93358	.	A	C	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;DP=56;Dels=0.00;FS=12.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=-0.231;QD=14.50;ReadPosRankSum=1.615;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,25:56:99:840,0,1093
+chr1	93504	.	G	A	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.560;QD=16.00;ReadPosRankSum=-0.653;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,29:59:99:972,0,962
+chr1	93508	.	G	C	2130.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.10;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2159,163,0
+chr1	93567	.	A	G	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;DP=59;Dels=0.00;FS=2.347;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.177;QD=9.56;ReadPosRankSum=0.344;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:39,20:59:99:592,0,1326
+chr1	93595	.	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;DP=49;Dels=0.00;FS=4.620;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.830;QD=7.95;ReadPosRankSum=-0.586;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,14:49:99:418,0,1282
+chr1	93676	.	A	G	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DP=55;Dels=0.00;FS=1.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.019;QD=17.14;ReadPosRankSum=1.372;EFF=SYNONYMOUS_CODING(LOW|SILENT|ttT/ttC|F1167|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_93628_93699)	GT:AD:DP:GQ:PL	0/1:27,28:55:99:971,0,908
+chr1	93754	.	T	A	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;DP=58;Dels=0.00;FS=5.597;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.191;QD=11.58;ReadPosRankSum=-0.111;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,23:58:99:700,0,1216
+chr1	93879	.	T	C	1833.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.96;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcA/gcG|A1137|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_93813_93975)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1862,141,0
+chr1	93903	.	G	T	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DP=45;Dels=0.00;FS=8.659;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.011;QD=16.62;ReadPosRankSum=-0.261;EFF=SYNONYMOUS_CODING(LOW|SILENT|atC/atA|I1129|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_93813_93975)	GT:AD:DP:GQ:PL	0/1:22,23:45:99:776,0,668
+chr1	93906	.	C	T	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;DP=47;Dels=0.00;FS=6.054;HaplotypeScore=1.9830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.098;QD=14.46;ReadPosRankSum=0.309;EFF=SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K1128|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_93813_93975)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:708,0,860
+chr1	93998	.	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.68;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2141,163,0
+chr1	94001	.	A	G	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DP=53;Dels=0.00;FS=2.323;HaplotypeScore=1.5782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.240;QD=16.86;ReadPosRankSum=0.827;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,27:53:99:922,0,890
+chr1	94020	.	G	C	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.331;QD=15.44;ReadPosRankSum=1.733;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,23:49:99:785,0,888
+chr1	94164	.	A	G	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-0.879;QD=15.00;ReadPosRankSum=-0.501;EFF=SYNONYMOUS_CODING(LOW|SILENT|taT/taC|Y1084|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_94102_94193)	GT:AD:DP:GQ:PL	0/1:30,26:56:99:868,0,1033
+chr1	94307	.	G	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DP=48;Dels=0.00;FS=1.133;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.403;QD=17.66;ReadPosRankSum=-0.631;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:22,26:48:99:876,0,754
+chr1	94331	.	G	T	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.692;QD=15.95;ReadPosRankSum=-0.109;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:714,0,748
+chr1	94476	.	G	T	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=1;MQRankSum=0.350;QD=18.87;ReadPosRankSum=-1.498;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,31:54:99:1047,0,739
+chr1	94499	.	C	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;DP=55;Dels=0.00;FS=1.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=1;MQRankSum=0.531;QD=13.83;ReadPosRankSum=0.218;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,24:55:99:789,0,1061
+chr1	94679	.	A	G	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.612;QD=15.70;ReadPosRankSum=-0.198;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctT/ctC|L1005|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_94543_94708)	GT:AD:DP:GQ:PL	0/1:26,25:51:99:829,0,859
+chr1	94743	.	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3122;MLEAC=1;MLEAF=0.500;MQ=61.17;MQ0=0;MQRankSum=-1.258;QD=9.38;ReadPosRankSum=3.272;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,12:36:99:366,0,807
+chr1	94753	.	A	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.8896;MLEAC=1;MLEAF=0.500;MQ=61.17;MQ0=0;MQRankSum=-0.225;QD=9.94;ReadPosRankSum=0.898;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:21,15:36:99:386,0,718
+chr1	94840	.	A	C	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135;DP=58;Dels=0.00;FS=0.999;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=-1.272;QD=13.00;ReadPosRankSum=-0.455;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tca/Gca|S985A|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_94808_94919)	GT:AD:DP:GQ:PL	0/1:33,25:58:99:782,0,1167
+chr1	94856	.	C	T	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-0.040;QD=18.01;ReadPosRankSum=0.523;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctG/ctA|L979|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_94808_94919)	GT:AD:DP:GQ:PL	0/1:25,32:57:99:1055,0,767
+chr1	94898	.	G	A	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;DP=57;Dels=0.00;FS=2.219;HaplotypeScore=1.6649;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=-0.679;QD=16.35;ReadPosRankSum=-2.038;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctC/ctT|L965|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_94808_94919)	GT:AD:DP:GQ:PL	0/1:27,30:57:99:960,0,917
+chr1	94963	.	C	A	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.638;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.668;QD=16.69;ReadPosRankSum=-0.503;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,26:52:99:896,0,874
+chr1	94973	.	A	T	2138.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.12;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2167,163,0
+chr1	95134	.	T	C	2154.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.28;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Act/Gct|T933A|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_95058_95208)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2183,169,0
+chr1	95594	.	A	G	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.180;DP=53;Dels=0.00;FS=5.738;HaplotypeScore=2.6552;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=1;MQRankSum=0.085;QD=17.22;ReadPosRankSum=0.349;EFF=SYNONYMOUS_CODING(LOW|SILENT|ggT/ggC|G817|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_95323_95596)	GT:AD:DP:GQ:PL	0/1:24,28:53:99:941,0,742
+chr1	95809	.	G	A	1511.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=34.54;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1540,114,0
+chr1	96016	.	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.43;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1342,99,0
+chr1	96111	.	A	C	1249.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.76;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1278,96,0
+chr1	96124	.	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.72;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1386,105,0
+chr1	96214	.	A	T	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;DP=67;Dels=0.00;FS=6.694;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=0.622;QD=15.04;ReadPosRankSum=0.321;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:36,31:67:99:1036,0,1067
+chr1	96224	.	G	A	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DP=61;Dels=0.00;FS=3.561;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=0;MQRankSum=0.656;QD=15.16;ReadPosRankSum=-2.171;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,30:61:99:953,0,1050
+chr1	96308	.	T	C	2053.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=28.62;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2082,154,0
+chr1	96309	.	A	G	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;DP=54;Dels=0.00;FS=7.971;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-0.262;QD=13.66;ReadPosRankSum=-2.029;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,23:54:99:766,0,1037
+chr1	96335	.	G	T	1948.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=30.44;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1977,147,0
+chr1	96360	.	G	A	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.447;DP=58;Dels=0.00;FS=3.832;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=1.081;QD=15.86;ReadPosRankSum=-0.864;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,30:58:99:948,0,883
+chr1	96399	.	T	G	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DP=51;Dels=0.00;FS=8.273;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=1.902;QD=17.76;ReadPosRankSum=1.618;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,28:51:99:934,0,788
+chr1	96448	.	G	A	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;DP=51;Dels=0.00;FS=4.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=1.121;QD=17.09;ReadPosRankSum=-1.479;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,26:51:99:900,0,792
+chr1	96485	.	A	T	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;DP=44;Dels=0.00;FS=2.672;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=0.141;QD=15.77;ReadPosRankSum=0.987;EFF=SYNONYMOUS_CODING(LOW|SILENT|acT/acA|T806|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_96455_96617)	GT:AD:DP:GQ:PL	0/1:23,21:44:99:722,0,775
+chr1	96530	.	G	A	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.746;QD=18.04;ReadPosRankSum=0.526;EFF=SYNONYMOUS_CODING(LOW|SILENT|aaC/aaT|N791|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_96455_96617)	GT:AD:DP:GQ:PL	0/1:19,24:43:99:804,0,602
+chr1	96637	.	G	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=0.628;QD=15.17;ReadPosRankSum=-1.798;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,24:47:99:741,0,788
+chr1	96789	.	C	T	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;DP=69;Dels=0.00;FS=0.918;HaplotypeScore=2.8662;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=1;MQRankSum=0.417;QD=15.65;ReadPosRankSum=1.436;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:36,33:69:99:1108,0,1126
+chr1	96791	.	T	C	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.8662;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=1;MQRankSum=1.110;QD=15.59;ReadPosRankSum=1.543;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,31:66:99:1057,0,1086
+chr1	96809	.	C	T	2747.77	.	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=1;QD=26.52;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2776,205,0
+chr1	96822	.	T	G	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=73;Dels=0.00;FS=1.969;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=1;MQRankSum=-0.475;QD=17.44;ReadPosRankSum=-0.328;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:33,40:73:99:1301,0,1128
+chr1	96868	.	A	T	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=72;Dels=0.00;FS=7.826;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=0.620;QD=17.65;ReadPosRankSum=0.631;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,37:72:99:1299,0,1177
+chr1	96880	.	C	T	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;DP=65;Dels=0.00;FS=3.414;HaplotypeScore=12.9967;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=0.795;QD=17.61;ReadPosRankSum=-0.729;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,34:65:99:1173,0,1062
+chr1	96881	.	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;DP=62;Dels=0.00;FS=4.010;HaplotypeScore=12.9967;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=0.752;QD=8.00;ReadPosRankSum=0.101;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:44,18:62:99:524,0,1555
+chr1	96885	.	G	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;DP=59;Dels=0.00;FS=2.212;HaplotypeScore=11.9973;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.053;QD=17.23;ReadPosRankSum=-0.675;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,30:59:99:1045,0,994
+chr1	97080	.	A	G	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;DP=53;Dels=0.00;FS=3.844;HaplotypeScore=4.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.312;QD=15.58;ReadPosRankSum=-1.630;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tTa/tCa|L759S|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_97071_97171)	GT:AD:DP:GQ:PL	0/1:28,25:53:99:854,0,987
+chr1	97141	.	G	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DP=35;Dels=0.00;FS=7.260;HaplotypeScore=3.5776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.183;QD=19.31;ReadPosRankSum=2.450;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ccc/Tcc|P739S|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_97071_97171)	GT:AD:DP:GQ:PL	0/1:15,20:35:99:704,0,461
+chr1	97145	.	G	A	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DP=37;Dels=0.00;FS=2.995;HaplotypeScore=5.4724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.461;QD=20.48;ReadPosRankSum=1.021;EFF=SYNONYMOUS_CODING(LOW|SILENT|ccC/ccT|P737|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_97071_97171)	GT:AD:DP:GQ:PL	0/1:13,23:37:99:786,0,395
+chr1	97223	.	A	C	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9971;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=0.412;QD=14.31;ReadPosRankSum=0.443;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,28:58:99:858,0,1018
+chr1	97268	.	G	T	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DP=63;Dels=0.00;FS=2.132;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-1.326;QD=12.76;ReadPosRankSum=-0.646;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:36,27:63:99:832,0,1288
+chr1	97299	.	A	G	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DP=62;Dels=0.00;FS=0.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=1.648;QD=14.48;ReadPosRankSum=-0.290;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:34,28:62:99:926,0,1199
+chr1	97312	.	A	G	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.498;DP=67;Dels=0.00;FS=0.988;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=1.608;QD=13.74;ReadPosRankSum=1.761;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:39,28:67:99:949,0,1344
+chr1	97491	.	T	G	2512.77	.	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=30.80;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2541,193,0
+chr1	97631	.	G	C	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243;DP=55;Dels=0.00;FS=2.478;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.377;QD=11.76;ReadPosRankSum=-0.320;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gCt/gGt|A723G|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_97615_97666)	GT:AD:DP:GQ:PL	0/1:34,21:55:99:675,0,1153
+chr1	97696	.	C	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;DP=46;Dels=0.00;FS=1.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=0.101;QD=12.26;ReadPosRankSum=1.362;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,18:46:99:592,0,888
+chr1	97749	.	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=0.748;QD=13.02;ReadPosRankSum=-0.831;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:27,21:48:99:653,0,801
+chr1	97919	.	A	T	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DP=46;Dels=0.00;FS=4.288;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-0.066;QD=16.41;ReadPosRankSum=-0.945;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:783,0,771
+chr1	97946	.	C	G	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;DP=41;Dels=0.00;FS=2.814;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=0.879;QD=14.68;ReadPosRankSum=-1.799;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,20:41:99:630,0,670
+chr1	98038	.	A	G	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;DP=50;Dels=0.00;FS=1.115;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-0.019;QD=17.68;ReadPosRankSum=0.564;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,27:50:99:912,0,770
+chr1	98051	.	A	T	1890.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=31.05;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1919,144,0
+chr1	98140	.	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=31.65;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1448,108,0
+chr1	98179	.	G	T	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DP=54;Dels=0.00;FS=3.840;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=-1.099;QD=16.44;ReadPosRankSum=1.013;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,28:54:99:916,0,864
+chr1	98231	.	T	A	2348.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.96;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2377,178,0
+chr1	98270	.	A	T	2354.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=28.54;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2383,178,0
+chr1	98294	.	A	G	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DP=52;Dels=0.00;FS=8.574;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-1.000;QD=15.21;ReadPosRankSum=0.707;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,24:52:99:819,0,922
+chr1	98466	.	A	G	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245;DP=47;Dels=0.00;FS=4.301;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=0.607;QD=15.61;ReadPosRankSum=-2.224;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,24:47:99:762,0,808
+chr1	98495	.	G	A	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=51;Dels=0.00;FS=4.035;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=0.390;QD=19.51;ReadPosRankSum=-1.113;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:22,29:51:99:1023,0,696
+chr1	98562	.	A	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DP=55;Dels=0.00;FS=5.711;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-1.698;QD=12.67;ReadPosRankSum=-0.572;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:32,23:55:99:725,0,1123
+chr1	98613	.	T	C	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;DP=41;Dels=0.00;FS=4.457;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.327;QD=14.31;ReadPosRankSum=1.011;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,18:41:99:615,0,801
+chr1	98666	.	A	T	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.742;DP=47;Dels=0.00;FS=2.744;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=1.116;QD=18.97;ReadPosRankSum=-3.002;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:19,28:47:99:920,0,631
+chr1	98933	.	A	T	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=1;MQRankSum=-0.034;QD=16.22;ReadPosRankSum=0.612;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,33:64:99:1066,0,1072
+chr1	99114	.	A	T	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7338;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-1.092;QD=14.05;ReadPosRankSum=-1.037;EFF=SYNONYMOUS_CODING(LOW|SILENT|atT/atA|I608|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_98997_99978)	GT:AD:DP:GQ:PL	0/1:28,24:52:99:759,0,894
+chr1	99351	.	A	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=45;Dels=0.00;FS=2.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-0.683;QD=11.93;ReadPosRankSum=0.637;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctT/ctA|L529|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_98997_99978)	GT:AD:DP:GQ:PL	0/1:27,18:45:99:565,0,935
+chr1	99567	.	T	G	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;DP=49;Dels=0.00;FS=12.036;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=0.412;QD=14.02;ReadPosRankSum=-0.533;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaA/gaC|E457D|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_98997_99978)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:715,0,877
+chr1	99633	.	A	G	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.9944;MLEAC=1;MLEAF=0.500;MQ=58.04;MQ0=0;MQRankSum=1.259;QD=13.09;ReadPosRankSum=-0.599;EFF=SYNONYMOUS_CODING(LOW|SILENT|agT/agC|S435|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_98997_99978)	GT:AD:DP:GQ:PL	0/1:24,19:43:99:591,0,731
+chr1	99642	.	C	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-0.702;QD=11.25;ReadPosRankSum=-0.579;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtG/gtA|V432|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_98997_99978)	GT:AD:DP:GQ:PL	0/1:25,18:43:99:512,0,818
+chr1	99729	.	G	A	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652;DP=53;Dels=0.00;FS=3.841;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.298;QD=18.45;ReadPosRankSum=-1.670;EFF=SYNONYMOUS_CODING(LOW|SILENT|ggC/ggT|G403|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_98997_99978)	GT:AD:DP:GQ:PL	0/1:22,31:53:99:1006,0,723
+chr1	99861	.	A	G	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;DP=48;Dels=0.00;FS=2.555;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.822;QD=18.89;ReadPosRankSum=-1.581;EFF=SYNONYMOUS_CODING(LOW|SILENT|agT/agC|S359|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_98997_99978)	GT:AD:DP:GQ:PL	0/1:19,29:48:99:935,0,572
+chr1	100026	.	T	C	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=-0.156;QD=20.77;ReadPosRankSum=-0.440;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:14,26:40:99:859,0,407
+chr1	100458	.	A	C	2457.77	.	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.83;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|ttT/ttG|F240L|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_100334_100464)	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2486,187,0
+chr1	100484	.	A	C	2630.77	.	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.86;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2659,199,0
+chr1	100660	.	T	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.981;QD=10.20;ReadPosRankSum=1.005;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,18:53:99:569,0,1225
+chr1	100710	.	A	C	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;DP=58;Dels=0.00;FS=1.023;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.213;QD=16.46;ReadPosRankSum=-1.944;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tTt/tGt|F235C|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_100701_100860)	GT:AD:DP:GQ:PL	0/1:29,29:58:99:983,0,1001
+chr1	100778	.	A	T	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;DP=60;Dels=0.00;FS=2.120;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.139;QD=16.76;ReadPosRankSum=0.888;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcT/gcA|A212|Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_100701_100860)	GT:AD:DP:GQ:PL	0/1:29,31:60:99:1034,0,964
+chr1	100875	.	C	A	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;DP=46;Dels=0.00;FS=1.178;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.963;QD=14.84;ReadPosRankSum=-0.794;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,21:46:99:711,0,861
+chr1	100917	.	T	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;DP=54;Dels=0.00;FS=3.266;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.189;QD=3.81;ReadPosRankSum=-3.129;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:44,10:54:99:234,0,1538
+chr1	101397	.	A	G	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=1;MQRankSum=0.492;QD=15.28;ReadPosRankSum=-0.361;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,29:57:99:899,0,799
+chr1	101547	.	A	G	1032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;DP=65;Dels=0.00;FS=10.521;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=0.833;QD=15.89;ReadPosRankSum=-0.151;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:32,33:65:99:1061,0,1064
+chr1	101623	.	T	C	2368.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9996;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.90;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2397,181,0
+chr1	101683	.	C	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;DP=41;Dels=0.00;FS=9.282;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.040;QD=12.41;ReadPosRankSum=0.437;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,17:41:99:537,0,822
+chr1	101684	.	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;DP=38;Dels=0.00;FS=9.942;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.910;QD=13.31;ReadPosRankSum=-0.411;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:21,17:38:99:534,0,741
+chr1	101745	.	G	A	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;DP=56;Dels=0.00;FS=3.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.107;QD=15.39;ReadPosRankSum=0.715;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,26:56:99:890,0,1039
+chr1	101797	.	C	A	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DP=66;Dels=0.00;FS=0.940;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.032;QD=16.34;ReadPosRankSum=-0.494;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:34,32:66:99:1107,0,1179
+chr1	101798	.	C	T	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DP=69;Dels=0.00;FS=1.986;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.198;QD=16.27;ReadPosRankSum=-0.582;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,34:69:99:1151,0,1212
+chr1	101823	.	C	T	2664.77	.	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=30.40;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2693,202,0
+chr1	101901	.	C	T	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;DP=38;Dels=0.00;FS=6.942;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=-1.407;QD=20.49;ReadPosRankSum=1.165;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:14,24:38:99:807,0,440
+chr1	101928	.	T	A	1680.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=38.41;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1709,129,0
+chr1	101943	.	G	C	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=-1.144;QD=21.97;ReadPosRankSum=-0.445;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:15,30:45:99:1017,0,464
+chr1	101964	.	A	T	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=0.379;QD=14.30;ReadPosRankSum=-0.037;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,19:43:99:643,0,818
+chr1	102084	.	T	C	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;DP=61;Dels=0.00;FS=0.974;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-0.816;QD=16.77;ReadPosRankSum=0.440;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,32:61:99:1051,0,930
+chr1	102113	.	A	C	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=1;MQRankSum=-1.220;QD=15.40;ReadPosRankSum=0.579;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,29:54:99:860,0,828
+chr1	102117	.	C	A	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DP=55;Dels=0.00;FS=2.323;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=1;MQRankSum=-1.307;QD=14.85;ReadPosRankSum=1.030;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,29:55:99:845,0,861
+chr1	102158	.	T	C	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;DP=54;Dels=0.00;FS=2.323;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=1;MQRankSum=1.951;QD=15.22;ReadPosRankSum=0.526;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,25:54:99:850,0,846
+chr1	102167	.	G	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;DP=57;Dels=0.00;FS=5.494;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=2;MQRankSum=0.806;QD=16.59;ReadPosRankSum=-2.418;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,33:57:99:974,0,828
+chr1	102180	.	T	A	2213.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=2;QD=25.80;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2242,166,0
+chr1	102205	.	T	C	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;DP=59;Dels=0.00;FS=1.030;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=1;MQRankSum=-0.661;QD=15.50;ReadPosRankSum=0.770;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,29:59:99:943,0,978
+chr1	102214	.	G	C	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=1;MQRankSum=-2.208;QD=15.30;ReadPosRankSum=-1.135;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,29:59:99:931,0,1005
+chr1	102348	.	T	G	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;DP=44;Dels=0.00;FS=11.766;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.295;QD=18.20;ReadPosRankSum=-0.554;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,24:44:99:829,0,650
+chr1	102411	.	T	A	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;DP=43;Dels=0.00;FS=2.999;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-0.308;QD=18.02;ReadPosRankSum=-0.382;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:18,25:43:99:803,0,602
+chr1	102443	.	C	T	1665.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=69.5886;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=30.29;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1694,126,0
+chr1	102454	.	T	A	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;DP=46;Dels=0.00;FS=19.456;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=1.572;QD=16.93;ReadPosRankSum=-1.352;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:22,24:46:99:807,0,705
+chr1	102506	.	A	G	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;DP=36;Dels=0.00;FS=5.231;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=1;MQRankSum=-1.950;QD=17.69;ReadPosRankSum=0.317;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:15,21:36:99:665,0,522
+chr1	102514	.	T	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;DP=39;Dels=0.00;FS=7.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=1;MQRankSum=0.617;QD=14.10;ReadPosRankSum=-0.264;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:22,17:39:99:578,0,741
+chr1	102576	.	C	G	1795.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=2;QD=31.84;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1824,135,0
+chr1	102597	.	T	A	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=1;MQRankSum=-0.495;QD=17.25;ReadPosRankSum=1.374;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:22,25:47:99:839,0,693
+chr1	102632	.	G	A	1747.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=1;QD=31.12;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1776,135,0
+chr1	102685	.	T	C	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;DP=48;Dels=0.00;FS=11.229;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-2.270;QD=15.41;ReadPosRankSum=-0.310;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,25:48:99:768,0,789
+chr1	102745	.	G	A	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;DP=57;Dels=0.00;FS=1.037;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-0.626;QD=12.54;ReadPosRankSum=0.203;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:34,23:57:99:743,0,1192
+chr1	102828	.	T	A	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.556;QD=13.44;ReadPosRankSum=-1.748;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,21:49:99:687,0,969
+chr1	102840	.	C	T	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;DP=49;Dels=0.00;FS=2.600;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.317;QD=11.49;ReadPosRankSum=-0.425;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,18:49:99:591,0,1069
+chr1	102853	.	A	T	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;DP=51;Dels=0.00;FS=4.012;HaplotypeScore=1.9978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.453;QD=20.98;ReadPosRankSum=0.473;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,31:51:99:1098,0,644
+chr1	103138	.	A	T	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DP=57;Dels=0.00;FS=3.801;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=2;MQRankSum=1.010;QD=17.93;ReadPosRankSum=-0.653;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,33:57:99:1050,0,812
+chr1	103150	.	T	C	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;DP=53;Dels=0.00;FS=2.466;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=2;MQRankSum=0.274;QD=14.58;ReadPosRankSum=-0.632;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,24:53:99:801,0,943
+chr1	103189	.	A	G	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;DP=55;Dels=0.00;FS=4.291;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=1;MQRankSum=0.854;QD=12.70;ReadPosRankSum=1.329;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:33,22:55:99:727,0,1140
+chr1	103225	.	G	A	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=1;MQRankSum=1.023;QD=15.72;ReadPosRankSum=-2.002;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,26:54:99:877,0,949
+chr1	103405	.	C	T	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DP=57;Dels=0.00;FS=2.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=0.280;QD=17.24;ReadPosRankSum=1.223;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:27,30:57:99:1011,0,920
+chr1	103515	.	G	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;DP=49;Dels=0.00;FS=2.536;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.222;QD=13.79;ReadPosRankSum=-0.778;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,21:49:99:704,0,944
+chr1	103542	.	G	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;DP=44;Dels=0.00;FS=2.800;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.991;QD=19.31;ReadPosRankSum=-1.492;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:18,26:44:99:878,0,558
+chr1	103599	.	C	G	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.7842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.583;QD=15.71;ReadPosRankSum=0.473;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,22:46:99:751,0,773
+chr1	103609	.	A	C	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;DP=48;Dels=0.00;FS=4.201;HaplotypeScore=3.7837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.330;QD=16.89;ReadPosRankSum=-1.218;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,25:48:99:839,0,793
+chr1	103612	.	C	T	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;DP=49;Dels=0.00;FS=1.101;HaplotypeScore=3.7837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.130;QD=17.30;ReadPosRankSum=-1.410;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,25:49:99:876,0,826
+chr1	103621	.	G	T	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.198;QD=17.70;ReadPosRankSum=-1.915;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,27:51:99:931,0,802
+chr1	103691	.	C	A	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DP=60;Dels=0.00;FS=2.252;HaplotypeScore=1.9982;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=-0.061;QD=21.20;ReadPosRankSum=2.646;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,37:60:99:1300,0,754
+chr1	103828	.	C	G	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DP=55;Dels=0.00;FS=7.450;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=0.227;QD=17.23;ReadPosRankSum=-0.109;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:27,28:55:99:976,0,894
+chr1	103856	.	C	T	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;DP=49;Dels=0.00;FS=16.948;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=-1.149;QD=12.02;ReadPosRankSum=-0.254;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,20:49:99:617,0,1000
+chr1	103995	.	G	A	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=-0.440;QD=12.81;ReadPosRankSum=-0.510;EFF=INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:37,26:63:99:835,0,1325
+chr1	104120	.	C	G	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DP=54;Dels=0.00;FS=5.785;HaplotypeScore=1.8666;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-0.227;QD=12.09;ReadPosRankSum=-1.032;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,23:54:99:681,0,1040
+chr1	104149	.	G	A	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DP=51;Dels=0.00;FS=2.555;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=-0.048;QD=19.29;ReadPosRankSum=-0.545;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:21,30:51:99:1012,0,605
+chr1	104155	.	A	G	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;DP=49;Dels=0.00;FS=4.412;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=0.798;QD=10.73;ReadPosRankSum=2.199;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,17:49:99:554,0,1041
+chr1	104159	.	C	T	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=51;Dels=0.00;FS=4.244;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-1.120;QD=11.25;ReadPosRankSum=1.685;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:32,19:51:99:602,0,1079
+chr1	104167	.	T	C	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DP=51;Dels=0.00;FS=2.473;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-1.109;QD=12.25;ReadPosRankSum=1.206;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,20:51:99:653,0,1056
+chr1	104213	.	C	T	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=1.104;QD=13.73;ReadPosRankSum=-1.481;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,23:53:99:756,0,1034
+chr1	104372	.	G	A	2025.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9914;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.37;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2054,156,0
+chr1	104376	.	T	C	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;DP=53;Dels=0.00;FS=10.088;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.367;QD=18.28;ReadPosRankSum=-1.903;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,29:53:99:997,0,714
+chr1	104545	.	A	C	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.847;QD=17.70;ReadPosRankSum=-0.007;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,33:61:99:1108,0,937
+chr1	104549	.	C	A	2426.77	.	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.18;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2455,184,0
+chr1	104570	.	G	T	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;DP=66;Dels=0.00;FS=2.084;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.212;QD=16.97;ReadPosRankSum=0.237;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:32,34:66:99:1148,0,1049
+chr1	104631	.	T	A	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7461;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=-1.676;QD=15.18;ReadPosRankSum=-0.596;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,32:67:99:1045,0,1181
+chr1	104738	.	A	T	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DP=70;Dels=0.00;FS=10.396;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.242;QD=18.40;ReadPosRankSum=0.383;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1316,0,1019
+chr1	104775	.	C	A	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=61;Dels=0.00;FS=2.287;HaplotypeScore=1.8663;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=1.380;QD=20.29;ReadPosRankSum=0.229;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,37:61:99:1266,0,700
+chr1	104901	.	T	G	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DP=55;Dels=0.00;FS=2.401;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.582;QD=18.03;ReadPosRankSum=0.464;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,29:55:99:1020,0,851
+chr1	104914	.	G	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.187;QD=15.35;ReadPosRankSum=-0.810;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:27,26:54:99:857,0,929
+chr1	105215	.	A	G	1426.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=27.94;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1455,111,0
+chr1	105276	.	A	G	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DP=49;Dels=0.02;FS=1.174;HaplotypeScore=2.9659;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=-0.120;QD=20.71;ReadPosRankSum=0.930;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:18,29:48:99:1043,0,542
+chr1	105289	.	C	A	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=1;MQRankSum=0.027;QD=19.57;ReadPosRankSum=0.587;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,31:54:99:1085,0,685
+chr1	105333	.	G	A	2241.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=1;QD=30.11;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2270,169,0
+chr1	105363	.	G	A	2110.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=1;QD=30.14;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2139,160,0
+chr1	105391	.	A	G	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DP=59;Dels=0.00;FS=7.470;HaplotypeScore=3.5213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.039;QD=12.00;ReadPosRankSum=-0.723;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:36,23:59:99:736,0,1250
+chr1	105594	.	A	G	2739.77	.	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=31.29;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2768,214,0
+chr1	105636	.	C	T	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;DP=70;Dels=0.00;FS=8.071;HaplotypeScore=4.6697;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.786;QD=15.83;ReadPosRankSum=0.090;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,34:70:99:1136,0,1128
+chr1	105656	.	G	A	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;DP=63;Dels=0.00;FS=6.709;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=-1.218;QD=15.63;ReadPosRankSum=-0.697;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,33:63:99:1013,0,1033
+chr1	105661	.	T	A	1957.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=36.35;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1986,147,0
+chr1	105662	.	T	A	2023.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.58;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2052,153,0
+chr1	105733	.	T	G	2248.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.503;DP=62;Dels=0.00;FS=3.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.335;QD=30.29;ReadPosRankSum=1.565;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:1,61:62:99:2277,135,0
+chr1	105750	.	C	T	2320.77	.	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=27.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2349,175,0
+chr1	105769	.	C	G	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DP=68;Dels=0.00;FS=3.397;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-1.071;QD=13.58;ReadPosRankSum=1.453;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:37,31:68:99:952,0,1291
+chr1	105775	.	A	G	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DP=66;Dels=0.00;FS=3.451;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=2.634;QD=17.97;ReadPosRankSum=-0.899;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,35:66:99:1214,0,951
+chr1	105776	.	C	T	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;DP=66;Dels=0.00;FS=3.451;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-1.105;QD=13.42;ReadPosRankSum=0.822;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,31:66:99:914,0,1186
+chr1	105815	.	C	A	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;DP=65;Dels=0.00;FS=2.177;HaplotypeScore=2.3346;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=0;MQRankSum=0.388;QD=17.30;ReadPosRankSum=-1.112;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),INTRON(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,35:65:99:1153,0,982
+chr1	105914	.	A	G	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-2.402;QD=19.33;ReadPosRankSum=1.939;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UTR_5_PRIME(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_105901_106373)	GT:AD:DP:GQ:PL	0/1:20,31:51:99:1014,0,607
+chr1	105940	.	A	G	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;DP=55;Dels=0.00;FS=1.036;HaplotypeScore=6.1984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.580;QD=11.83;ReadPosRankSum=1.117;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UTR_5_PRIME(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_105901_106373)	GT:AD:DP:GQ:PL	0/1:34,21:55:99:679,0,1160
+chr1	106000	.	G	A	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DP=48;Dels=0.00;FS=2.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.475;QD=15.08;ReadPosRankSum=-0.598;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UTR_5_PRIME(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_105901_106373)	GT:AD:DP:GQ:PL	0/1:25,23:48:99:752,0,840
+chr1	106003	.	C	T	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DP=49;Dels=0.00;FS=2.512;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.730;QD=15.87;ReadPosRankSum=-0.650;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UTR_5_PRIME(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_105901_106373)	GT:AD:DP:GQ:PL	0/1:25,24:49:99:806,0,839
+chr1	106222	.	A	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;DP=56;Dels=0.00;FS=3.858;HaplotypeScore=2.9889;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=-0.294;QD=10.64;ReadPosRankSum=-1.736;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UTR_5_PRIME(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_105901_106373)	GT:AD:DP:GQ:PL	0/1:34,22:56:99:624,0,1107
+chr1	106301	.	G	A	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;DP=76;Dels=0.00;FS=3.172;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=0.057;QD=16.14;ReadPosRankSum=-0.161;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UTR_5_PRIME(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_105901_106373)	GT:AD:DP:GQ:PL	0/1:38,38:76:99:1255,0,1277
+chr1	106304	.	C	T	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244;DP=75;Dels=0.00;FS=3.136;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=0.178;QD=14.90;ReadPosRankSum=0.871;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UTR_5_PRIME(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_105901_106373)	GT:AD:DP:GQ:PL	0/1:38,36:75:99:1146,0,1287
+chr1	106352	.	T	A	2717.77	.	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=31.70;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UTR_5_PRIME(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|Exon_chr1_105901_106373)	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2746,208,0
+chr1	106447	.	C	A	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=58;Dels=0.00;FS=3.667;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=1.169;QD=15.17;ReadPosRankSum=-0.171;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,27:58:99:908,0,1064
+chr1	106476	.	T	G	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DP=77;Dels=0.00;FS=16.431;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=1.137;QD=17.53;ReadPosRankSum=2.024;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1378,0,1148
+chr1	106481	.	T	C	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;DP=76;Dels=0.00;FS=14.274;HaplotypeScore=3.8312;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=0.091;QD=12.37;ReadPosRankSum=-0.562;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:43,32:76:99:968,0,1489
+chr1	106482	.	G	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;DP=76;Dels=0.00;FS=17.089;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-2.404;QD=12.63;ReadPosRankSum=0.132;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:44,32:76:99:988,0,1538
+chr1	106502	.	C	T	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;DP=80;Dels=0.00;FS=9.385;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-0.833;QD=15.21;ReadPosRankSum=0.949;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:42,38:80:99:1245,0,1351
+chr1	106522	.	G	C	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DP=73;Dels=0.00;FS=7.905;HaplotypeScore=3.1224;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=-0.745;QD=17.30;ReadPosRankSum=0.083;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:36,37:73:99:1291,0,1178
+chr1	106546	.	A	T	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;DP=68;Dels=0.00;FS=21.595;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=16.29;ReadPosRankSum=0.061;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:33,35:68:99:1136,0,1064
+chr1	106547	.	T	A	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;DP=65;Dels=0.00;FS=19.861;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.581;QD=13.38;ReadPosRankSum=0.754;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:33,32:65:99:898,0,1081
+chr1	106583	.	A	C	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DP=51;Dels=0.00;FS=1.066;HaplotypeScore=1.8313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.161;QD=18.17;ReadPosRankSum=-1.259;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,28:51:99:955,0,750
+chr1	106636	.	C	G	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;DP=53;Dels=0.00;FS=4.175;HaplotypeScore=2.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.208;QD=12.96;ReadPosRankSum=0.713;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:715,0,996
+chr1	106713	.	G	T	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;DP=52;Dels=0.00;FS=10.628;HaplotypeScore=24.7277;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-1.007;QD=15.17;ReadPosRankSum=0.623;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:27,25:52:99:817,0,902
+chr1	106753	.	T	A	10.2	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;DP=40;Dels=0.00;FS=2.183;HaplotypeScore=19.7108;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=0.900;QD=0.26;ReadPosRankSum=-1.963;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,5:40:38:38,0,1284
+chr1	106797	.	G	A	1867.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.94;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1896,141,0
+chr1	106811	.	G	A,C	1402.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;QD=32.61;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/2:0,27,16:43:99:1616,598,517,1018,0,970
+chr1	106817	.	C	T	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DP=40;Dels=0.00;FS=2.928;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.801;QD=23.29;ReadPosRankSum=0.241;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:14,26:40:99:960,0,454
+chr1	106840	.	C	T	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;DP=44;Dels=0.00;FS=2.926;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.801;QD=25.20;ReadPosRankSum=1.029;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:13,31:44:99:1137,0,394
+chr1	106843	.	G	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;DP=44;Dels=0.00;FS=2.926;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.206;QD=8.09;ReadPosRankSum=-1.260;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,13:44:99:384,0,1140
+chr1	106856	.	G	A	1422.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.48;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1451,108,0
+chr1	106885	.	A	T	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DP=33;Dels=0.00;FS=9.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.646;QD=22.57;ReadPosRankSum=0.921;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:10,23:33:99:773,0,304
+chr1	106934	.	T	A	450.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=34.67;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:36:479,36,0
+chr1	106992	.	T	C	120.03	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=3;QD=15.00;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:3,5:8:12:148,12,0
+chr1	106996	.	C	T	120.03	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=3;QD=15.00;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:3,5:8:12:148,12,0
+chr1	107014	.	C	T	121.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=2;QD=17.29;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:1,6:7:12:149,12,0
+chr1	107015	.	T	C	121.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=1;QD=20.17;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:1,5:6:12:149,12,0
+chr1	107020	.	C	T	121.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=1;QD=20.17;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,5:6:12:149,12,0
+chr1	107021	.	T	C	121.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=1;QD=20.17;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:12:149,12,0
+chr1	107045	.	G	A	121.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=2;QD=17.29;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:2,5:7:12:149,12,0
+chr1	107068	.	G	A	83.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=1;QD=16.66;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:9:111,9,0
+chr1	107156	.	A	T	10.9	LowQual	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.26;MQ0=3;MQRankSum=0.736;QD=1.82;ReadPosRankSum=-0.736;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:4,2:6:3:37,3,0
+chr1	107197	.	C	T	120.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.4725;MLEAC=2;MLEAF=1.00;MQ=12.97;MQ0=14;MQRankSum=2.957;QD=3.75;ReadPosRankSum=1.774;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:27,5:32:12:148,12,0
+chr1	107202	.	G	A	116.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.449;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5362;MLEAC=2;MLEAF=1.00;MQ=13.15;MQ0=13;MQRankSum=2.654;QD=3.63;ReadPosRankSum=1.674;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:18,14:32:12:144,12,0
+chr1	107216	.	G	T	87.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.1146;MLEAC=2;MLEAF=1.00;MQ=12.19;MQ0=12;MQRankSum=1.535;QD=2.73;ReadPosRankSum=0.395;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:19,6:32:9:115,9,0
+chr1	107223	.	G	A	78.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.529;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.0304;MLEAC=2;MLEAF=1.00;MQ=12.37;MQ0=12;MQRankSum=2.646;QD=2.45;ReadPosRankSum=0.000;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:27,5:32:9:106,9,0
+chr1	107234	.	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;DP=34;Dels=0.00;FS=10.000;HaplotypeScore=3.3679;MLEAC=1;MLEAF=0.500;MQ=15.56;MQ0=13;MQRankSum=2.161;QD=1.99;ReadPosRankSum=-0.955;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,4:34:58:96,0,58
+chr1	107332	.	A	G	264.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=1;QD=24.07;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,10:11:24:293,24,0
+chr1	107410	.	T	G	122.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.88;MQ0=4;MQRankSum=1.754;QD=11.09;ReadPosRankSum=-1.754;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:7,4:11:12:150,12,0
+chr1	107457	.	G	A	251.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.263;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=12;MQRankSum=3.308;QD=8.99;ReadPosRankSum=0.368;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:20,8:28:21:280,21,0
+chr1	107475	.	G	T	273.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.088;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=12;MQRankSum=3.532;QD=9.13;ReadPosRankSum=-0.177;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:19,9:30:24:302,24,0
+chr1	107492	.	A	G	271.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.144;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=19.86;MQ0=12;MQRankSum=3.416;QD=9.37;ReadPosRankSum=0.722;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:20,9:29:24:300,24,0
+chr1	107493	.	A	C	268.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.847;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=19.86;MQ0=12;MQRankSum=3.281;QD=9.27;ReadPosRankSum=0.318;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:18,9:29:24:297,24,0
+chr1	107755	.	G	A	128.03	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=32.01;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
+chr1	107795	.	G	T	489.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=1;QD=34.98;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,14:14:39:518,39,0
+chr1	107900	.	T	C	502.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=33.52;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:42:531,42,0
+chr1	107903	.	A	G	489.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=32.65;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:42:518,42,0
+chr1	108008	.	A	T	911.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=25.82;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,26:26:72:940,72,0
+chr1	108057	.	A	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;DP=45;Dels=0.00;FS=1.181;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.59;MQ0=1;MQRankSum=2.204;QD=13.15;ReadPosRankSum=3.264;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,20:45:99:620,0,784
+chr1	108058	.	C	T	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;DP=45;Dels=0.00;FS=1.167;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.59;MQ0=1;MQRankSum=-1.780;QD=17.55;ReadPosRankSum=-2.817;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,25:45:99:818,0,619
+chr1	108069	.	A	G	872.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=1;QD=25.69;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:66:901,66,0
+chr1	108088	.	C	T	944.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=1;QD=29.43;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:72:973,72,0
+chr1	108089	.	A	G	933.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=1;QD=32.35;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:72:962,72,0
+chr1	108104	.	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DP=47;Dels=0.00;FS=1.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.48;MQ0=0;MQRankSum=-4.097;QD=14.00;ReadPosRankSum=-5.544;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,23:47:99:686,0,806
+chr1	108110	.	C	T	1376.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=34.42;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1405,114,0
+chr1	108111	.	A	G	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DP=40;Dels=0.00;FS=1.279;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.31;MQ0=0;MQRankSum=2.878;QD=9.97;ReadPosRankSum=4.693;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,14:40:99:427,0,745
+chr1	108112	.	G	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;DP=40;Dels=0.00;FS=1.279;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.31;MQ0=0;MQRankSum=2.793;QD=9.94;ReadPosRankSum=4.693;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,14:40:99:426,0,750
+chr1	108120	.	A	C	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=48;Dels=0.00;FS=2.509;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.28;MQ0=0;MQRankSum=-2.348;QD=14.56;ReadPosRankSum=0.021;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:21,27:48:99:727,0,612
+chr1	108125	.	T	C	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;DP=46;Dels=0.00;FS=2.597;HaplotypeScore=1.9987;MLEAC=1;MLEAF=0.500;MQ=33.80;MQ0=0;MQRankSum=1.807;QD=11.10;ReadPosRankSum=-1.584;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:27,19:46:99:539,0,755
+chr1	108127	.	C	T	1486.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.9987;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=33.04;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1515,126,0
+chr1	108128	.	A	G	1489.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.9987;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=33.11;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1518,126,0
+chr1	108131	.	C	T	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;DP=52;Dels=0.00;FS=5.913;HaplotypeScore=1.9987;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=3;MQRankSum=-1.012;QD=13.32;ReadPosRankSum=2.875;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,26:52:99:721,0,597
+chr1	108137	.	T	A	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DP=52;Dels=0.00;FS=5.913;HaplotypeScore=1.9987;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=3;MQRankSum=-1.072;QD=13.30;ReadPosRankSum=4.498;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,26:52:99:720,0,593
+chr1	108138	.	G	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;DP=52;Dels=0.00;FS=5.913;HaplotypeScore=1.9987;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=3;MQRankSum=0.952;QD=10.88;ReadPosRankSum=-4.658;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,26:52:99:594,0,722
+chr1	108168	.	G	A	896.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=3;QD=25.62;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:81:925,81,0
+chr1	108170	.	A	G	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;DP=35;Dels=0.00;FS=5.449;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.18;MQ0=3;MQRankSum=0.019;QD=7.68;ReadPosRankSum=2.982;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:18,17:35:99:297,0,467
+chr1	108172	.	A	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;DP=34;Dels=0.00;FS=5.449;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.06;MQ0=3;MQRankSum=0.020;QD=7.99;ReadPosRankSum=2.918;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:300,0,431
+chr1	108179	.	A	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;DP=31;Dels=0.00;FS=1.744;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=3;MQRankSum=-0.092;QD=7.67;ReadPosRankSum=3.271;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:15,16:31:99:266,0,355
+chr1	108237	.	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;DP=52;Dels=0.00;FS=1.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.32;MQ0=1;MQRankSum=0.076;QD=2.84;ReadPosRankSum=-3.358;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:42,9:51:99:176,0,1420
+chr1	108244	.	C	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;DP=52;Dels=0.00;FS=3.548;HaplotypeScore=34.2618;MLEAC=1;MLEAF=0.500;MQ=45.72;MQ0=1;MQRankSum=0.507;QD=3.19;ReadPosRankSum=-2.533;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:43,9:52:99:194,0,1435
+chr1	108245	.	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=52;Dels=0.00;FS=3.605;HaplotypeScore=34.2618;MLEAC=1;MLEAF=0.500;MQ=45.72;MQ0=1;MQRankSum=0.358;QD=3.17;ReadPosRankSum=-2.508;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:43,9:52:99:193,0,1432
+chr1	108320	.	T	C	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.89;MQ0=0;MQRankSum=-1.995;QD=13.85;ReadPosRankSum=-0.737;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:32,24:56:99:804,0,1051
+chr1	108356	.	C	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DP=72;Dels=0.00;FS=1.099;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=1;MQRankSum=1.076;QD=7.89;ReadPosRankSum=-0.354;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:50,22:72:99:596,0,1658
+chr1	108358	.	G	C	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;DP=72;Dels=0.00;FS=2.450;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=1;MQRankSum=0.603;QD=8.11;ReadPosRankSum=-0.180;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:50,22:72:99:612,0,1682
+chr1	108381	.	C	G	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;DP=57;Dels=0.00;FS=2.406;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=1.583;QD=9.47;ReadPosRankSum=-0.279;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:38,19:57:99:568,0,1331
+chr1	108383	.	C	T	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DP=59;Dels=0.00;FS=2.367;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=0.657;QD=10.86;ReadPosRankSum=-0.768;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:38,21:59:99:669,0,1309
+chr1	108421	.	T	C	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DP=54;Dels=0.00;FS=5.922;HaplotypeScore=10.9950;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=0.455;QD=12.48;ReadPosRankSum=-1.854;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,23:54:99:702,0,1090
+chr1	108425	.	C	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=10.9950;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.604;QD=12.76;ReadPosRankSum=0.604;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,20:50:99:666,0,1049
+chr1	108449	.	A	G	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;DP=52;Dels=0.00;FS=6.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=1;MQRankSum=1.139;QD=12.59;ReadPosRankSum=-1.005;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:30,22:52:99:683,0,1017
+chr1	108459	.	T	C	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DP=57;Dels=0.00;FS=9.593;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=1;MQRankSum=-0.379;QD=17.36;ReadPosRankSum=1.269;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,31:57:99:1018,0,841
+chr1	108471	.	G	A	2484.77	.	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=1;QD=27.75;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2513,190,0
+chr1	108482	.	T	C	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;DP=70;Dels=0.00;FS=6.663;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=1;MQRankSum=-0.510;QD=11.90;ReadPosRankSum=-0.092;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:42,28:70:99:861,0,1470
+chr1	108528	.	T	A	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;DP=90;Dels=0.00;FS=2.962;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=3;MQRankSum=-0.509;QD=12.06;ReadPosRankSum=-0.057;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:53,37:90:99:1114,0,1842
+chr1	108603	.	T	C	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;DP=72;Dels=0.00;FS=5.096;HaplotypeScore=1.9946;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-1.165;QD=10.07;ReadPosRankSum=0.770;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:48,24:72:99:753,0,1647
+chr1	108612	.	T	C	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;DP=75;Dels=0.00;FS=7.991;HaplotypeScore=66.7830;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-0.528;QD=11.52;ReadPosRankSum=0.647;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:46,29:75:99:892,0,1572
+chr1	108628	.	A	C	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;DP=62;Dels=0.00;FS=2.268;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=-0.346;QD=10.00;ReadPosRankSum=1.802;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:40,22:62:99:648,0,1375
+chr1	108660	.	G	A	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=51;Dels=0.00;FS=1.101;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=-0.575;QD=16.15;ReadPosRankSum=-1.008;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,26:51:99:852,0,837
+chr1	108664	.	C	T	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DP=49;Dels=0.00;FS=2.568;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=-0.551;QD=15.63;ReadPosRankSum=-1.653;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,26:49:99:794,0,758
+chr1	108691	.	A	T	981.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.94;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1010,78,0
+chr1	108698	.	C	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DP=38;Dels=0.00;FS=8.656;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=0.998;QD=13.70;ReadPosRankSum=-4.374;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:21,17:38:99:549,0,669
+chr1	108709	.	A	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DP=37;Dels=0.00;FS=12.587;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=0.442;QD=13.97;ReadPosRankSum=-0.411;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,17:37:99:545,0,634
+chr1	108759	.	T	A	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;DP=55;Dels=0.00;FS=33.086;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=1.155;QD=14.38;ReadPosRankSum=0.868;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,26:55:99:819,0,968
+chr1	108772	.	G	A	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;DP=54;Dels=0.00;FS=28.588;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=-1.120;QD=13.33;ReadPosRankSum=-0.805;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,23:54:99:748,0,1076
+chr1	108785	.	C	G	1842.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=29.90;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1871,141,0
+chr1	108796	.	C	T	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;DP=42;Dels=0.00;FS=2.508;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.950;QD=27.59;ReadPosRankSum=-0.858;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:9,33:42:99:1187,0,248
+chr1	108799	.	G	A	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=1.684;QD=26.97;ReadPosRankSum=-0.583;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:9,31:40:99:1107,0,249
+chr1	108827	.	C	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;DP=32;Dels=0.00;FS=27.227;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-3.223;QD=11.99;ReadPosRankSum=-0.269;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:19,13:32:99:412,0,643
+chr1	108889	.	C	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;DP=18;Dels=0.00;FS=3.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=0;MQRankSum=-1.616;QD=26.71;ReadPosRankSum=-1.335;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:2,16:18:33:509,0,33
+chr1	108893	.	A	G	636.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;DP=22;Dels=0.00;FS=3.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=-0.400;QD=28.95;ReadPosRankSum=-1.770;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:2,20:22:18:665,0,18
+chr1	108940	.	T	G	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;DP=35;Dels=0.00;FS=14.801;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.160;QD=22.74;ReadPosRankSum=1.404;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:11,24:35:99:824,0,345
+chr1	108944	.	A	G	1416.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.95;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1445,108,0
+chr1	108956	.	G	A	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DP=38;Dels=0.00;FS=10.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.354;QD=23.86;ReadPosRankSum=-2.157;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:11,27:38:99:935,0,334
+chr1	108987	.	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=30;Dels=0.00;FS=5.654;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=0.022;QD=9.69;ReadPosRankSum=-0.374;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,10:30:99:319,0,707
+chr1	108988	.	A	G,T	817.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.21;MQ0=0;QD=31.43;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/2:0,10,16:26:99:981,597,567,383,0,335
+chr1	108990	.	G	A,T	801.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.21;MQ0=0;QD=30.82;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/2:0,10,16:26:99:964,583,553,382,0,333
+chr1	109006	.	G	A	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;DP=30;Dels=0.00;FS=9.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=-0.963;QD=18.89;ReadPosRankSum=2.637;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:13,17:30:99:595,0,411
+chr1	109022	.	A	G	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;DP=22;Dels=0.00;FS=2.126;HaplotypeScore=3.9974;MLEAC=1;MLEAF=0.500;MQ=58.25;MQ0=0;MQRankSum=-1.672;QD=19.94;ReadPosRankSum=0.307;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:8,14:22:99:467,0,255
+chr1	109058	.	A	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DP=26;Dels=0.00;FS=6.641;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=0;MQRankSum=-4.308;QD=19.07;ReadPosRankSum=0.467;EFF=DOWNSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:11,15:26:99:524,0,360
+chr1	109062	.	A	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;DP=27;Dels=0.00;FS=9.864;HaplotypeScore=13.9930;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=-4.440;QD=16.55;ReadPosRankSum=1.626;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:13,14:27:99:475,0,443
+chr1	109083	.	T	C	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;DP=34;Dels=0.00;FS=14.575;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=-3.295;QD=14.64;ReadPosRankSum=2.432;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:18,16:34:99:526,0,626
+chr1	109085	.	G	A	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.173;DP=37;Dels=0.00;FS=16.965;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=0;MQRankSum=-3.692;QD=15.80;ReadPosRankSum=1.109;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:18,19:37:99:613,0,599
+chr1	109091	.	G	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;DP=42;Dels=0.00;FS=18.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-1.845;QD=17.92;ReadPosRankSum=-0.379;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,23:42:99:781,0,633
+chr1	109097	.	T	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.958;DP=44;Dels=0.00;FS=18.557;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=-2.652;QD=15.47;ReadPosRankSum=-1.072;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:20,24:44:99:709,0,666
+chr1	109115	.	C	T	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;DP=42;Dels=0.00;FS=9.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=-1.862;QD=16.52;ReadPosRankSum=-1.233;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:722,0,721
+chr1	109169	.	G	C	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;DP=46;Dels=0.00;FS=1.139;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.191;QD=21.19;ReadPosRankSum=-0.979;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:18,28:46:99:1003,0,590
+chr1	109252	.	C	T	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;DP=54;Dels=0.00;FS=7.888;HaplotypeScore=2.6437;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=0.461;QD=20.94;ReadPosRankSum=-0.763;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:21,33:54:99:1159,0,672
+chr1	109254	.	G	A	2185.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6648;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=32.54;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2214,166,0
+chr1	109269	.	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;DP=54;Dels=0.00;FS=15.735;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=-0.175;QD=11.68;ReadPosRankSum=0.455;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:31,23:54:99:659,0,1060
+chr1	109311	.	T	A	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=0.952;QD=14.86;ReadPosRankSum=-0.651;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:23,26:50:99:771,0,715
+chr1	109317	.	T	C	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DP=48;Dels=0.00;FS=1.079;HaplotypeScore=2.3119;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=0.702;QD=13.12;ReadPosRankSum=-0.021;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:25,23:48:99:658,0,763
+chr1	109405	.	T	C	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;DP=42;Dels=0.00;FS=6.930;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=2;MQRankSum=-0.585;QD=15.68;ReadPosRankSum=-0.938;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:18,24:42:99:687,0,600
+chr1	109412	.	C	A	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;DP=47;Dels=0.00;FS=6.249;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=2;MQRankSum=1.422;QD=16.31;ReadPosRankSum=-0.375;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:21,26:47:99:795,0,679
+chr1	109420	.	A	T	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;DP=50;Dels=0.00;FS=1.145;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=2;MQRankSum=1.148;QD=15.90;ReadPosRankSum=-0.010;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:22,28:50:99:823,0,754
+chr1	109464	.	C	T	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;DP=60;Dels=0.00;FS=7.465;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=3;MQRankSum=-1.214;QD=16.45;ReadPosRankSum=-0.217;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:25,35:60:99:1015,0,831
+chr1	109479	.	G	A	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;DP=53;Dels=0.00;FS=8.418;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=3;MQRankSum=2.123;QD=17.43;ReadPosRankSum=-1.356;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:21,32:53:99:952,0,701
+chr1	109530	.	G	A	1926.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=1;QD=29.57;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1955,147,0
+chr1	109539	.	T	C	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DP=51;Dels=0.00;FS=2.465;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=1;MQRankSum=1.378;QD=17.49;ReadPosRankSum=-0.518;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:22,29:51:99:920,0,726
+chr1	109549	.	C	T	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;DP=60;Dels=0.00;FS=1.044;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=1;MQRankSum=-0.603;QD=13.80;ReadPosRankSum=0.237;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:34,26:60:99:856,0,1084
+chr1	109620	.	A	T	2529.77	.	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.89;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2558,199,0
+chr1	109646	.	G	A	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;DP=57;Dels=0.00;FS=1.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=-0.471;QD=16.52;ReadPosRankSum=0.311;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:29,28:57:99:970,0,961
+chr1	109673	.	A	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.120;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=0.499;QD=14.44;ReadPosRankSum=1.382;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:33,28:61:99:909,0,993
+chr1	109689	.	C	T	2343.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=36.47;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2372,175,0
+chr1	109734	.	G	A	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;DP=56;Dels=0.00;FS=2.436;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=0;MQRankSum=0.033;QD=14.01;ReadPosRankSum=0.115;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:31,25:56:99:813,0,1012
+chr1	109767	.	C	T	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;DP=54;Dels=0.00;FS=5.623;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=54.31;MQ0=0;MQRankSum=-0.035;QD=13.44;ReadPosRankSum=1.596;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:29,25:54:99:754,0,928
+chr1	109788	.	T	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.10;MQ0=0;MQRankSum=-3.116;QD=5.73;ReadPosRankSum=2.141;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:32,10:42:99:269,0,1133
+chr1	109814	.	C	T	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;DP=47;Dels=0.00;FS=1.192;HaplotypeScore=2.4678;MLEAC=1;MLEAF=0.500;MQ=51.18;MQ0=0;MQRankSum=-4.437;QD=10.59;ReadPosRankSum=-1.494;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:27,18:47:99:526,0,933
+chr1	109855	.	C	G	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.1986;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=-5.305;QD=11.95;ReadPosRankSum=1.686;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:25,18:43:99:542,0,816
+chr1	109898	.	G	A	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;DP=42;Dels=0.00;FS=4.504;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.07;MQ0=0;MQRankSum=-4.596;QD=14.49;ReadPosRankSum=-0.038;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:22,20:42:99:637,0,754
+chr1	109948	.	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;DP=45;Dels=0.00;FS=4.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.56;MQ0=0;MQRankSum=-4.171;QD=13.66;ReadPosRankSum=-0.931;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,26:45:99:643,0,655
+chr1	109992	.	C	G	1090.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=20.2910;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=25.97;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,42:42:90:1119,90,0
+chr1	110000	.	T	C	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3547;MLEAC=1;MLEAF=0.500;MQ=40.16;MQ0=0;MQRankSum=-3.699;QD=6.42;ReadPosRankSum=0.672;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:330,0,703
+chr1	110006	.	A	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.5657;MLEAC=1;MLEAF=0.500;MQ=41.04;MQ0=0;MQRankSum=-3.990;QD=5.89;ReadPosRankSum=0.251;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:317,0,813
+chr1	110065	.	T	G	10.2	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=29;Dels=0.00;FS=5.711;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=0;MQRankSum=-2.399;QD=0.35;ReadPosRankSum=-1.898;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:26,3:29:38:38,0,838
+chr1	110066	.	T	G	11.12	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;DP=29;Dels=0.00;FS=5.711;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=0;MQRankSum=-2.399;QD=0.38;ReadPosRankSum=-1.826;EFF=UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|),UTR_3_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:26,3:29:39:39,0,891
+chr1	110176	.	A	G	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;DP=39;Dels=0.00;FS=2.780;HaplotypeScore=3.5109;MLEAC=1;MLEAF=0.500;MQ=46.75;MQ0=0;MQRankSum=-0.407;QD=13.61;ReadPosRankSum=-0.014;EFF=SYNONYMOUS_CODING(LOW|SILENT|acT/acC|T411|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_109059_110454),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:20,19:39:99:559,0,657
+chr1	110245	.	A	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.81;MQ0=0;MQRankSum=-0.531;QD=10.88;ReadPosRankSum=-0.142;EFF=SYNONYMOUS_CODING(LOW|SILENT|taT/taC|Y388|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_109059_110454),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:26,16:42:99:485,0,885
+chr1	110253	.	A	C	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.29;MQ0=0;MQRankSum=-0.744;QD=10.27;ReadPosRankSum=0.281;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tca/Gca|S386A|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_109059_110454),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,16:44:99:480,0,992
+chr1	110499	.	C	A	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;DP=57;Dels=0.00;FS=7.487;HaplotypeScore=1.9858;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=0.040;QD=15.54;ReadPosRankSum=1.365;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:29,28:57:99:914,0,969
+chr1	110535	.	G	A	2517.77	.	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=29.61;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2546,193,0
+chr1	110567	.	C	A	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;DP=65;Dels=0.00;FS=12.462;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.072;QD=17.29;ReadPosRankSum=-0.965;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:31,34:65:99:1152,0,1057
+chr1	110655	.	A	G	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;DP=49;Dels=0.00;FS=10.545;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.344;QD=18.79;ReadPosRankSum=-0.414;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:21,28:49:99:949,0,664
+chr1	110660	.	G	C	1835.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.79;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1864,141,0
+chr1	110836	.	G	C	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=18.3458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.256;QD=13.11;ReadPosRankSum=0.128;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:25,17:42:99:579,0,858
+chr1	110841	.	C	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DP=42;Dels=0.00;FS=1.210;HaplotypeScore=18.3458;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=-0.025;QD=14.76;ReadPosRankSum=-0.783;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,19:42:99:648,0,793
+chr1	110897	.	G	T	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=0;MQRankSum=-0.138;QD=16.14;ReadPosRankSum=-0.344;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:577,0,566
+chr1	110902	.	G	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DP=36;Dels=0.00;FS=1.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=0.792;QD=15.33;ReadPosRankSum=-0.032;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:19,17:36:99:580,0,630
+chr1	110931	.	T	A	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DP=46;Dels=0.00;FS=4.246;HaplotypeScore=2.7878;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=1.242;QD=17.30;ReadPosRankSum=-1.440;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:22,24:46:99:824,0,677
+chr1	110948	.	T	A	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;DP=55;Dels=0.00;FS=1.028;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=57.81;MQ0=0;MQRankSum=0.416;QD=17.70;ReadPosRankSum=-0.772;EFF=SYNONYMOUS_CODING(LOW|SILENT|atA/atT|I314|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_110936_111082),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:24,31:55:99:1002,0,664
+chr1	110974	.	T	G	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;DP=77;Dels=0.00;FS=4.904;HaplotypeScore=1.9464;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=3;MQRankSum=-1.165;QD=18.06;ReadPosRankSum=-0.195;EFF=SYNONYMOUS_CODING(LOW|SILENT|Aga/Cga|R306|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_110936_111082),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:28,49:77:99:1419,0,866
+chr1	111002	.	G	A	3102.77	.	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=3;QD=33.73;EFF=SYNONYMOUS_CODING(LOW|SILENT|ggC/ggT|G296|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_110936_111082),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3131,241,0
+chr1	111012	.	A	G	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.621;DP=99;Dels=0.00;FS=4.879;HaplotypeScore=1.9775;MLEAC=1;MLEAF=0.500;MQ=52.31;MQ0=2;MQRankSum=-2.017;QD=1.50;ReadPosRankSum=1.985;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTa/aCa|I293T|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_110936_111082),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:85,14:99:99:177,0,2833
+chr1	111037	.	C	T	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;DP=91;Dels=0.00;FS=27.980;HaplotypeScore=5.8656;MLEAC=1;MLEAF=0.500;MQ=52.14;MQ0=1;MQRankSum=-5.776;QD=7.67;ReadPosRankSum=1.097;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ggg/Agg|G285R|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_110936_111082),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:61,30:91:99:726,0,2033
+chr1	111047	.	C	T	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.018;DP=95;Dels=0.00;FS=36.143;HaplotypeScore=18.9090;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=2;MQRankSum=-6.952;QD=8.96;ReadPosRankSum=-0.167;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctG/ctA|L281|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_110936_111082),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:55,39:95:99:879,0,1831
+chr1	111053	.	G	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DP=94;Dels=0.00;FS=22.160;HaplotypeScore=52.4073;MLEAC=1;MLEAF=0.500;MQ=50.62;MQ0=2;MQRankSum=2.884;QD=5.07;ReadPosRankSum=-0.550;EFF=SYNONYMOUS_CODING(LOW|SILENT|taC/taT|Y279|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_110936_111082),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:75,19:94:99:505,0,2239
+chr1	111063	.	G	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;DP=88;Dels=0.00;FS=26.842;HaplotypeScore=20.7019;MLEAC=1;MLEAF=0.500;MQ=49.44;MQ0=2;MQRankSum=-5.090;QD=3.58;ReadPosRankSum=-0.104;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCg/aTg|T276M|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_110936_111082),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:67,21:88:99:343,0,2305
+chr1	111093	.	T	G	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;DP=72;Dels=0.00;FS=18.592;HaplotypeScore=4.3003;MLEAC=1;MLEAF=0.500;MQ=48.32;MQ0=2;MQRankSum=-5.719;QD=9.66;ReadPosRankSum=1.059;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:40,31:72:99:724,0,1232
+chr1	111097	.	C	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;DP=72;Dels=0.00;FS=35.215;HaplotypeScore=4.3003;MLEAC=1;MLEAF=0.500;MQ=48.27;MQ0=2;MQRankSum=-6.753;QD=9.77;ReadPosRankSum=1.271;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:37,35:72:99:732,0,1245
+chr1	111100	.	A	G	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;DP=71;Dels=0.00;FS=28.661;HaplotypeScore=4.3003;MLEAC=1;MLEAF=0.500;MQ=48.11;MQ0=2;MQRankSum=-5.937;QD=9.72;ReadPosRankSum=0.950;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:40,31:71:99:718,0,1230
+chr1	111136	.	T	C	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=59.2005;MLEAC=1;MLEAF=0.500;MQ=51.26;MQ0=0;MQRankSum=-5.507;QD=20.14;ReadPosRankSum=1.606;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:23,49:72:99:1478,0,710
+chr1	111137	.	T	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=58.2007;MLEAC=1;MLEAF=0.500;MQ=51.13;MQ0=0;MQRankSum=5.353;QD=9.45;ReadPosRankSum=-1.274;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:49,22:71:99:699,0,1451
+chr1	111146	.	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=19.0679;MLEAC=1;MLEAF=0.500;MQ=51.24;MQ0=1;MQRankSum=-5.478;QD=4.65;ReadPosRankSum=0.664;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:53,21:74:99:372,0,1862
+chr1	111162	.	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;DP=77;Dels=0.00;FS=4.192;HaplotypeScore=2.5773;MLEAC=1;MLEAF=0.500;MQ=50.69;MQ0=1;MQRankSum=-4.854;QD=3.78;ReadPosRankSum=-0.383;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:57,20:77:99:319,0,1968
+chr1	111178	.	A	G	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.787;DP=88;Dels=0.00;FS=4.774;HaplotypeScore=23.6084;MLEAC=1;MLEAF=0.500;MQ=51.68;MQ0=1;MQRankSum=-2.409;QD=9.66;ReadPosRankSum=0.590;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:58,30:88:99:878,0,1739
+chr1	111187	.	C	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;DP=91;Dels=0.00;FS=21.798;HaplotypeScore=61.2603;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=1;MQRankSum=-5.366;QD=4.35;ReadPosRankSum=-0.991;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),SPLICE_SITE_DONOR(HIGH||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:69,22:91:99:424,0,2409
+chr1	111193	.	A	T	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;DP=87;Dels=0.00;FS=25.534;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=53.35;MQ0=1;MQRankSum=-4.830;QD=5.18;ReadPosRankSum=-0.680;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgg/Agg|W268R|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111188_111241),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:67,20:87:99:479,0,2299
+chr1	111194	.	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;DP=87;Dels=0.00;FS=25.534;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=53.42;MQ0=1;MQRankSum=-4.830;QD=5.11;ReadPosRankSum=-0.649;EFF=SYNONYMOUS_CODING(LOW|SILENT|taC/taT|Y267|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111188_111241),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:67,20:87:99:473,0,2303
+chr1	111218	.	A	G	1531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DP=85;Dels=0.00;FS=28.288;HaplotypeScore=40.8045;MLEAC=1;MLEAF=0.500;MQ=53.15;MQ0=1;MQRankSum=-6.832;QD=18.02;ReadPosRankSum=0.372;EFF=SYNONYMOUS_CODING(LOW|SILENT|gaT/gaC|D259|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111188_111241),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:35,50:85:99:1560,0,1149
+chr1	111221	.	A	G	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DP=85;Dels=0.00;FS=2.368;HaplotypeScore=41.6986;MLEAC=1;MLEAF=0.500;MQ=53.00;MQ0=1;MQRankSum=-0.591;QD=5.79;ReadPosRankSum=0.772;EFF=SYNONYMOUS_CODING(LOW|SILENT|ggT/ggC|G258|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111188_111241),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:63,21:85:99:520,0,2174
+chr1	111222	.	C	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;DP=85;Dels=0.00;FS=52.665;HaplotypeScore=41.6986;MLEAC=1;MLEAF=0.500;MQ=53.00;MQ0=1;MQRankSum=-6.297;QD=9.76;ReadPosRankSum=-0.509;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gGt/gAt|G258D|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111188_111241),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:55,30:85:99:858,0,1882
+chr1	111233	.	C	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DP=83;Dels=0.00;FS=8.074;HaplotypeScore=21.7535;MLEAC=1;MLEAF=0.500;MQ=52.66;MQ0=0;MQRankSum=0.985;QD=6.33;ReadPosRankSum=-0.484;EFF=SYNONYMOUS_CODING(LOW|SILENT|ccG/ccT|P254|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111188_111241),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:63,20:83:99:554,0,2166
+chr1	111239	.	C	T	1826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DP=83;Dels=0.00;FS=18.536;HaplotypeScore=20.7540;MLEAC=1;MLEAF=0.500;MQ=52.71;MQ0=0;MQRankSum=-5.866;QD=22.01;ReadPosRankSum=-0.753;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtG/gtA|V252|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111188_111241),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:27,56:83:99:1855,0,817
+chr1	111265	.	T	C	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;DP=74;Dels=0.00;FS=53.983;HaplotypeScore=13.9941;MLEAC=1;MLEAF=0.500;MQ=52.93;MQ0=0;MQRankSum=-6.988;QD=12.77;ReadPosRankSum=2.319;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:42,32:74:99:973,0,1429
+chr1	111274	.	T	C	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;DP=65;Dels=0.00;FS=22.427;HaplotypeScore=13.9941;MLEAC=1;MLEAF=0.500;MQ=52.66;MQ0=0;MQRankSum=4.440;QD=9.60;ReadPosRankSum=-1.326;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:44,21:65:99:652,0,1525
+chr1	111296	.	T	A	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.855;DP=60;Dels=0.00;FS=47.063;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.47;MQ0=0;MQRankSum=-6.194;QD=11.68;ReadPosRankSum=-0.038;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:36,24:60:99:729,0,1223
+chr1	111307	.	C	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.080;DP=61;Dels=0.00;FS=45.484;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.52;MQ0=0;MQRankSum=-6.030;QD=8.75;ReadPosRankSum=-0.269;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:41,20:61:99:562,0,1377
+chr1	111315	.	A	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DP=53;Dels=0.00;FS=25.441;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-4.672;QD=4.07;ReadPosRankSum=-2.694;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:43,10:53:99:244,0,1509
+chr1	111318	.	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;DP=50;Dels=0.00;FS=22.968;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=0;MQRankSum=-4.247;QD=3.04;ReadPosRankSum=-2.686;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	0/1:42,8:50:99:180,0,1475
+chr1	111328	.	C	T	2042.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=31.58;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|),UPSTREAM(MODIFIER||||Cc01g00070|mRNA||GSCOCT00012432001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2071,162,0
+chr1	111397	.	G	A	2124.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=1;QD=28.28;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2153,166,0
+chr1	111485	.	C	T	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=1;MQRankSum=-1.024;QD=15.81;ReadPosRankSum=1.190;EFF=SYNONYMOUS_CODING(LOW|SILENT|caG/caA|Q223|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111401_111565)	GT:AD:DP:GQ:PL	0/1:23,26:49:99:803,0,742
+chr1	111592	.	T	A	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;DP=60;Dels=0.00;FS=3.582;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.112;QD=13.36;ReadPosRankSum=-0.246;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:34,26:60:99:830,0,1146
+chr1	111732	.	A	G	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQ0=0;MQRankSum=-1.026;QD=14.15;ReadPosRankSum=1.868;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:27,25:52:99:764,0,902
+chr1	111733	.	G	A	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQ0=0;MQRankSum=2.274;QD=17.17;ReadPosRankSum=-2.142;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:24,27:51:99:904,0,661
+chr1	111744	.	G	A	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;DP=48;Dels=0.00;FS=2.691;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.62;MQ0=0;MQRankSum=0.557;QD=16.14;ReadPosRankSum=-0.227;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:23,25:48:99:803,0,707
+chr1	111927	.	C	T	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;DP=61;Dels=0.00;FS=8.983;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.791;QD=18.34;ReadPosRankSum=0.399;EFF=SYNONYMOUS_CODING(LOW|SILENT|caG/caA|Q139|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111756_112103)	GT:AD:DP:GQ:PL	0/1:27,34:61:99:1147,0,896
+chr1	111933	.	G	A	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DP=59;Dels=0.00;FS=11.534;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.586;QD=18.06;ReadPosRankSum=0.936;EFF=SYNONYMOUS_CODING(LOW|SILENT|atC/atT|I137|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111756_112103)	GT:AD:DP:GQ:PL	0/1:27,32:59:99:1094,0,890
+chr1	112070	.	T	C	1601.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=27.83;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Atc/Gtc|I92V|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_111756_112103)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1630,123,0
+chr1	112145	.	T	C	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DP=47;Dels=0.00;FS=8.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-2.922;QD=20.63;ReadPosRankSum=0.908;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:18,29:47:99:998,0,587
+chr1	112157	.	A	T	1725.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=24.4498;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.37;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1754,129,0
+chr1	112214	.	G	A	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=2;MQRankSum=0.106;QD=14.87;ReadPosRankSum=-2.021;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:20,19:39:99:608,0,645
+chr1	112312	.	C	G	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DP=44;Dels=0.00;FS=4.661;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-0.391;QD=23.70;ReadPosRankSum=-0.340;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:14,30:44:99:1071,0,416
+chr1	112332	.	G	A	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.8666;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=0.961;QD=7.80;ReadPosRankSum=-0.320;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:30,12:42:99:356,0,1063
+chr1	112390	.	A	T	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DP=47;Dels=0.00;FS=2.499;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=0.835;QD=11.10;ReadPosRankSum=-0.271;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:28,19:47:99:550,0,929
+chr1	112486	.	A	C	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;DP=57;Dels=0.00;FS=12.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.64;MQ0=0;MQRankSum=0.008;QD=12.10;ReadPosRankSum=-1.976;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:34,23:57:99:718,0,1139
+chr1	112608	.	A	G	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;DP=62;Dels=0.00;FS=0.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-0.596;QD=13.66;ReadPosRankSum=-0.185;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:35,27:62:99:875,0,1208
+chr1	112714	.	A	C	1539.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=44;Dels=0.00;FS=2.884;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.873;QD=34.99;ReadPosRankSum=0.817;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:2,42:44:59:1568,59,0
+chr1	112726	.	A	G	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DP=45;Dels=0.00;FS=1.256;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=0.059;QD=10.97;ReadPosRankSum=-0.925;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:28,17:45:99:522,0,972
+chr1	112738	.	A	G	1769.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=28.86;EFF=INTRON(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1798,138,0
+chr1	112792	.	A	G	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DP=41;Dels=0.00;FS=7.053;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.535;QD=16.53;ReadPosRankSum=0.561;EFF=SYNONYMOUS_CODING(LOW|SILENT|Ttg/Ctg|L68|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:20,21:41:99:706,0,681
+chr1	112909	.	A	C	1038.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=31.52;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ttg/Gtg|L29V|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1067,81,0
+chr1	112926	.	A	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=24.1961;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=-0.021;QD=14.43;ReadPosRankSum=-3.139;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTt/gAt|V23D|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:14,16:30:99:461,0,376
+chr1	112983	.	A	G	1239.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.7883;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=33.51;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTt/gCt|V4A|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1268,99,0
+chr1	112990	.	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.3109;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=0.352;QD=7.05;ReadPosRankSum=-0.185;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Acg/Gcg|T2A|Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:24,12:36:99:282,0,828
+chr1	112999	.	T	C	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=1;MLEAF=0.500;MQ=57.95;MQ0=0;MQRankSum=1.333;QD=22.16;ReadPosRankSum=-0.622;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:11,24:35:99:804,0,241
+chr1	113028	.	T	C	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=18.3184;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=-1.835;QD=9.35;ReadPosRankSum=0.000;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:17,11:28:99:290,0,593
+chr1	113037	.	G	T	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=20.2844;MLEAC=1;MLEAF=0.500;MQ=56.42;MQ0=0;MQRankSum=-2.110;QD=8.84;ReadPosRankSum=-0.220;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:14,9:25:99:258,0,479
+chr1	113038	.	A	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=19.2851;MLEAC=1;MLEAF=0.500;MQ=56.27;MQ0=0;MQRankSum=-0.827;QD=7.51;ReadPosRankSum=0.582;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:16,8:24:99:216,0,560
+chr1	113090	.	A	C	20.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;DP=41;Dels=0.00;FS=2.417;HaplotypeScore=13.9009;MLEAC=1;MLEAF=0.500;MQ=55.93;MQ0=2;MQRankSum=0.949;QD=0.51;ReadPosRankSum=-0.532;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:37,4:41:49:49,0,1144
+chr1	113092	.	C	T	1222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;DP=42;Dels=0.00;FS=2.442;HaplotypeScore=13.9009;MLEAC=1;MLEAF=0.500;MQ=56.03;MQ0=2;MQRankSum=-1.195;QD=29.11;ReadPosRankSum=0.789;EFF=START_GAINED(LOW||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:4,38:42:40:1251,0,40
+chr1	113105	.	T	A	1562.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=2;QD=30.97;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1591,117,0
+chr1	113115	.	G	A	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;DP=45;Dels=0.00;FS=1.232;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=2;MQRankSum=1.145;QD=17.44;ReadPosRankSum=-0.628;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:18,27:45:99:813,0,572
+chr1	113119	.	G	A	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DP=45;Dels=0.00;FS=2.776;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.79;MQ0=2;MQRankSum=0.335;QD=11.11;ReadPosRankSum=0.907;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:28,17:45:99:528,0,850
+chr1	113161	.	C	T	1227.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=29.79;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1256,96,0
+chr1	113173	.	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=1.037;QD=10.59;ReadPosRankSum=0.148;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:18,12:30:99:346,0,540
+chr1	113177	.	T	C	998.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.30;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1027,78,0
+chr1	113178	.	G	A	1046.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=29.64;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,28:28:81:1075,81,0
+chr1	113190	.	C	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;DP=29;Dels=0.00;FS=1.585;HaplotypeScore=1.7883;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=-0.665;QD=8.34;ReadPosRankSum=-1.996;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:19,10:29:99:270,0,614
+chr1	113238	.	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=20.8374;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-0.586;QD=3.57;ReadPosRankSum=2.277;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:21,5:26:99:121,0,747
+chr1	113268	.	T	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;DP=36;Dels=0.00;FS=5.290;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=0.353;QD=10.83;ReadPosRankSum=-0.257;EFF=START_GAINED(LOW||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:21,15:36:99:418,0,717
+chr1	113287	.	A	C	1111.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=29.47;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1140,90,0
+chr1	113306	.	A	C	1268.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=31.06;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1297,99,0
+chr1	113324	.	C	A	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;DP=34;Dels=0.00;FS=1.524;HaplotypeScore=1.9977;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-0.248;QD=20.79;ReadPosRankSum=0.071;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:13,21:34:99:735,0,408
+chr1	113358	.	G	A	385.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQ0=0;MQRankSum=-0.134;QD=29.68;ReadPosRankSum=1.470;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	0/1:1,12:13:2:412,0,2
+chr1	113386	.	A	G	130.03	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=32.51;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
+chr1	113396	.	T	C	43.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.87;EFF=UTR_5_PRIME(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
+chr1	113410	.	A	T	156.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=31.38;EFF=START_GAINED(LOW||||Cc01g00080|mRNA||GSCOCT00012431001|Exon_chr1_112754_113429)	GT:AD:DP:GQ:PL	1/1:0,5:5:15:185,15,0
+chr1	113431	.	A	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.03;MQ0=0;MQRankSum=1.920;QD=18.85;ReadPosRankSum=1.920;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:3,5:8:82:179,0,82
+chr1	113440	.	T	A	180.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=26.86;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
+chr1	113444	.	T	A	178.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=31.25;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
+chr1	113446	.	A	C	181.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=27.48;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
+chr1	113450	.	A	T	214.84	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=31.14;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
+chr1	113468	.	G	C	23.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=48.78;MQ0=0;MQRankSum=-2.670;QD=1.59;ReadPosRankSum=-0.505;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:12,3:15:52:52,0,418
+chr1	113483	.	T	C	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=52.57;MQ0=0;MQRankSum=-0.354;QD=1.10;ReadPosRankSum=-2.239;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,2:11:40:40,0,313
+chr1	113488	.	T	C	240.8	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=30.10;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,8:8:21:269,21,0
+chr1	113492	.	T	C	269.78	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=33.72;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,8:8:24:298,24,0
+chr1	113500	.	T	C	242.8	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=34.69;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:21:271,21,0
+chr1	113503	.	T	C	254.8	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=27.09;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
+chr1	113505	.	T	C	237.8	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=33.97;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:21:266,21,0
+chr1	113522	.	T	C	153.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=30.78;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:15:182,15,0
+chr1	114239	.	A	C	56.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=28.37;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr1	114264	.	C	G	551.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=32.00;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:42:580,42,0
+chr1	114287	.	G	A	771.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=28.22;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,22:22:63:800,63,0
+chr1	114304	.	A	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;DP=21;Dels=0.00;FS=5.898;HaplotypeScore=11.6441;MLEAC=1;MLEAF=0.500;MQ=54.71;MQ0=0;MQRankSum=-2.064;QD=10.66;ReadPosRankSum=-1.195;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:13,8:21:99:252,0,383
+chr1	114311	.	G	A	481.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.217;DP=16;Dels=0.00;FS=7.270;HaplotypeScore=3.6636;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.868;QD=30.07;ReadPosRankSum=1.302;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:1,15:16:10:509,10,0
+chr1	114312	.	G	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.329;DP=16;Dels=0.00;FS=6.726;HaplotypeScore=3.6636;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=0;MQRankSum=-2.223;QD=11.05;ReadPosRankSum=-1.799;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,7:16:99:205,0,294
+chr1	114313	.	G	C	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=3.6636;MLEAC=1;MLEAF=0.500;MQ=53.77;MQ0=0;MQRankSum=0.722;QD=13.40;ReadPosRankSum=2.646;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,8:17:99:256,0,295
+chr1	114326	.	T	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;DP=21;Dels=0.00;FS=4.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.20;MQ0=0;MQRankSum=0.249;QD=12.27;ReadPosRankSum=0.107;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:12,9:21:99:286,0,380
+chr1	114330	.	T	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;DP=21;Dels=0.00;FS=4.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.20;MQ0=0;MQRankSum=-0.462;QD=16.94;ReadPosRankSum=-0.320;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,12:21:99:384,0,253
+chr1	114353	.	C	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;DP=15;Dels=0.00;FS=2.059;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=-1.591;QD=11.18;ReadPosRankSum=-0.648;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,6:15:99:196,0,307
+chr1	114354	.	A	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;DP=15;Dels=0.00;FS=2.059;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=1.945;QD=18.85;ReadPosRankSum=0.530;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:6,9:15:99:311,0,195
+chr1	114356	.	G	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;DP=15;Dels=0.00;FS=2.059;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=1.120;QD=18.92;ReadPosRankSum=0.530;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:6,9:15:99:312,0,191
+chr1	114371	.	G	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=8.9971;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=-0.899;QD=13.75;ReadPosRankSum=0.417;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:16,13:29:99:427,0,524
+chr1	114439	.	T	C	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;DP=37;Dels=0.00;FS=3.179;HaplotypeScore=1.5781;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=0;MQRankSum=0.445;QD=17.07;ReadPosRankSum=0.230;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:16,21:37:99:660,0,452
+chr1	114460	.	C	A	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DP=36;Dels=0.00;FS=9.728;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQ0=0;MQRankSum=-0.398;QD=13.74;ReadPosRankSum=-1.894;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:20,16:36:99:523,0,607
+chr1	114463	.	T	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;DP=35;Dels=0.00;FS=5.449;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=0;MQRankSum=-0.579;QD=14.34;ReadPosRankSum=2.434;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:16,19:35:99:530,0,535
+chr1	114470	.	T	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;DP=26;Dels=0.00;FS=7.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.96;MQ0=0;MQRankSum=1.004;QD=4.38;ReadPosRankSum=0.822;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:20,6:26:99:142,0,623
+chr1	114472	.	A	C	864.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=34.59;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:69:893,69,0
+chr1	114475	.	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;DP=25;Dels=0.00;FS=7.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.84;MQ0=0;MQRankSum=-0.350;QD=5.47;ReadPosRankSum=1.813;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,6:25:99:165,0,582
+chr1	114476	.	G	C	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;DP=25;Dels=0.00;FS=7.908;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.84;MQ0=0;MQRankSum=-0.223;QD=5.75;ReadPosRankSum=2.004;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,6:25:99:172,0,560
+chr1	114480	.	C	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;DP=25;Dels=0.00;FS=7.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.84;MQ0=0;MQRankSum=-1.304;QD=5.71;ReadPosRankSum=2.450;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,6:25:99:171,0,583
+chr1	114486	.	T	G	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DP=31;Dels=0.00;FS=17.994;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=0;MQRankSum=0.434;QD=8.86;ReadPosRankSum=0.681;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:20,11:31:99:303,0,607
+chr1	114494	.	C	G	1000.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=30.60;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1029,78,0
+chr1	114501	.	G	A	815.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=33.99;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:66:844,66,0
+chr1	114552	.	C	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.040;DP=25;Dels=0.00;FS=11.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.99;MQ0=0;MQRankSum=0.245;QD=17.19;ReadPosRankSum=1.006;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:12,13:25:99:458,0,356
+chr1	114576	.	A	T	643.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=37.73;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:51:672,51,0
+chr1	114578	.	T	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DP=24;Dels=0.00;FS=4.533;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.41;MQ0=0;MQRankSum=0.381;QD=7.32;ReadPosRankSum=1.778;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:17,7:24:99:204,0,601
+chr1	114603	.	A	C	1082.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=29.78;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1111,84,0
+chr1	114617	.	G	A	1458.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=28.9952;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=27.04;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1487,114,0
+chr1	114621	.	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=29.59;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1430,111,0
+chr1	114645	.	A	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=37.7265;MLEAC=1;MLEAF=0.500;MQ=45.53;MQ0=0;MQRankSum=-1.288;QD=20.49;ReadPosRankSum=1.767;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:11,23:34:99:725,0,274
+chr1	114719	.	A	G	12.77	LowQual	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=4.26;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:3:39,3,0
+chr1	114726	.	A	G	10.9	LowQual	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=3.63;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:3:37,3,0
+chr1	114739	.	T	C	14.68	LowQual	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=4.89;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:3:41,3,0
+chr1	114740	.	C	T	11.83	LowQual	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=3.94;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:3:38,3,0
+chr1	114744	.	T	C	15.65	LowQual	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=5.22;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:3:42,3,0
+chr1	114746	.	A	G	15.65	LowQual	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=5.22;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:3:42,3,0
+chr1	114752	.	A	G	13.72	LowQual	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=4.57;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:3:40,3,0
+chr1	114770	.	G	C	44.74	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=8.95;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:6:72,6,0
+chr1	114788	.	T	C	46.74	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=11.69;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,3:4:6:74,6,0
+chr1	114810	.	T	G	15.65	LowQual	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.41;MQ0=0;QD=7.83;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:3:42,3,0
+chr1	114906	.	T	G	147.9	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;QD=21.13;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:15:176,15,0
+chr1	114967	.	A	T	395.9	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;MQRankSum=2.100;QD=28.28;ReadPosRankSum=0.822;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:2,12:14:15:424,15,0
+chr1	115005	.	G	A	307.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.086;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=29.1197;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;MQRankSum=1.678;QD=23.64;ReadPosRankSum=-1.086;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:2,11:13:9:335,9,0
+chr1	115006	.	C	T	312.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.099;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=33.6508;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;MQRankSum=1.678;QD=24.02;ReadPosRankSum=-1.086;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:2,11:13:9:340,9,0
+chr1	115080	.	G	A	659.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=24.72;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:688,51,0
+chr1	115081	.	G	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DP=17;Dels=0.00;FS=1.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.90;MQ0=0;MQRankSum=0.433;QD=16.63;ReadPosRankSum=-0.433;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:8,9:17:99:311,0,275
+chr1	115090	.	T	C	776.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=33.63;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:805,60,0
+chr1	115098	.	G	T	841.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=32.76;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,22:22:66:870,66,0
+chr1	115143	.	A	G	816.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=26.49;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:63:845,63,0
+chr1	115156	.	A	G	687.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=31.79;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:54:716,54,0
+chr1	115169	.	T	C	779.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=28.56;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:60:808,60,0
+chr1	115181	.	T	G	1085.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=34.25;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1114,84,0
+chr1	115198	.	A	G	817.1	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-1.201;QD=34.05;ReadPosRankSum=2.246;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:2,22:24:11:845,11,0
+chr1	115206	.	C	T	1077.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=34.94;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1106,81,0
+chr1	115249	.	G	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;DP=53;Dels=0.00;FS=9.816;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=0.278;QD=13.15;ReadPosRankSum=-1.463;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:30,23:53:99:725,0,1025
+chr1	115259	.	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=29.15;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2136,166,0
+chr1	115271	.	A	G	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;DP=57;Dels=0.00;FS=11.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=1.031;QD=16.42;ReadPosRankSum=-3.364;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:27,30:57:99:964,0,858
+chr1	115276	.	G	T	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;DP=60;Dels=0.00;FS=6.930;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=0.956;QD=14.70;ReadPosRankSum=-2.838;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:32,28:60:99:910,0,1060
+chr1	115303	.	C	T	2271.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=28.19;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2300,172,0
+chr1	115305	.	A	G	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;DP=56;Dels=0.00;FS=5.501;HaplotypeScore=51.1251;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=0;MQRankSum=3.741;QD=14.66;ReadPosRankSum=-0.379;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:31,25:56:99:849,0,1091
+chr1	115352	.	T	C	875.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.250;QD=32.44;ReadPosRankSum=2.268;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:2,25:27:5:903,5,0
+chr1	115355	.	A	G	885.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.694;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.157;QD=32.81;ReadPosRankSum=1.898;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:2,25:27:6:913,6,0
+chr1	115360	.	T	C	783.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.98;MQ0=0;MQRankSum=-1.129;QD=31.34;ReadPosRankSum=1.965;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:3,22:25:7:811,0,7
+chr1	115381	.	A	G	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.28;MQ0=1;MQRankSum=4.365;QD=21.12;ReadPosRankSum=5.503;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:21,35:56:99:1211,0,406
+chr1	115385	.	C	T	2076.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=1;QD=35.26;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2105,160,0
+chr1	115399	.	G	T	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.993;DP=58;Dels=0.00;FS=5.640;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=1;MQRankSum=-3.684;QD=11.55;ReadPosRankSum=-2.448;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:34,24:58:99:698,0,1158
+chr1	115400	.	C	T	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DP=58;Dels=0.00;FS=5.893;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=1;MQRankSum=-2.871;QD=11.38;ReadPosRankSum=-2.415;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:34,24:58:99:688,0,1133
+chr1	115414	.	A	G	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;DP=64;Dels=0.00;FS=3.517;HaplotypeScore=52.2248;MLEAC=1;MLEAF=0.500;MQ=55.46;MQ0=1;MQRankSum=2.511;QD=18.81;ReadPosRankSum=-0.519;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:29,35:64:99:1232,0,864
+chr1	115418	.	T	C	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DP=66;Dels=0.00;FS=0.952;HaplotypeScore=30.9607;MLEAC=1;MLEAF=0.500;MQ=55.61;MQ0=1;MQRankSum=3.185;QD=17.12;ReadPosRankSum=0.112;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:32,34:66:99:1158,0,983
+chr1	115440	.	A	C	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9932;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=1;MQRankSum=0.387;QD=14.95;ReadPosRankSum=2.190;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:32,31:63:99:970,0,1095
+chr1	115476	.	T	C	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;DP=52;Dels=0.00;FS=1.083;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-0.880;QD=13.59;ReadPosRankSum=1.676;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:30,22:52:99:735,0,938
+chr1	115480	.	C	A	1943.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=27.17;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1972,150,0
+chr1	115485	.	T	C	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DP=58;Dels=0.00;FS=5.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=0.179;QD=16.48;ReadPosRankSum=0.288;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:28,30:58:99:984,0,900
+chr1	115540	.	T	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DP=54;Dels=0.00;FS=4.135;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=-0.444;QD=11.44;ReadPosRankSum=-1.047;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:33,21:54:99:646,0,1164
+chr1	115548	.	T	C	2024.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=26.84;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2053,157,0
+chr1	115568	.	T	A	987.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=26.97;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1016,75,0
+chr1	115569	.	G	A	945.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=25.19;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:72:974,72,0
+chr1	115571	.	T	A	938.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=27.94;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:75:967,75,0
+chr1	115574	.	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;DP=37;Dels=0.00;FS=4.170;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.36;MQ0=0;MQRankSum=-1.454;QD=3.64;ReadPosRankSum=1.183;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:30,7:37:99:163,0,1074
+chr1	115602	.	G	C	1954.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=29.47;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1983,147,0
+chr1	115617	.	C	T	2393.77	.	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=29.55;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2422,184,0
+chr1	115730	.	A	G	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;DP=35;Dels=0.00;FS=8.346;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.007;QD=16.96;ReadPosRankSum=-1.007;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:17,18:35:99:622,0,576
+chr1	115732	.	G	A	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;DP=34;Dels=0.00;FS=5.871;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.103;QD=15.08;ReadPosRankSum=-1.033;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:541,0,583
+chr1	115738	.	G	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;DP=37;Dels=0.00;FS=5.540;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=-0.229;QD=16.99;ReadPosRankSum=-2.088;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:17,20:37:99:657,0,575
+chr1	115746	.	A	C	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;DP=38;Dels=0.00;FS=7.279;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=-0.905;QD=15.23;ReadPosRankSum=-1.401;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,19:38:99:607,0,655
+chr1	115752	.	C	A	1480.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=34.30;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1509,114,0
+chr1	115793	.	G	A	2310.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=27.91;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2339,175,0
+chr1	115811	.	T	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;DP=53;Dels=0.00;FS=10.487;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=58.34;MQ0=0;MQRankSum=-2.283;QD=12.62;ReadPosRankSum=2.897;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:697,0,1114
+chr1	115814	.	T	G	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;DP=53;Dels=0.00;FS=10.487;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=58.34;MQ0=0;MQRankSum=-2.500;QD=12.67;ReadPosRankSum=2.987;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:700,0,1111
+chr1	115817	.	A	C	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;DP=53;Dels=0.00;FS=8.267;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=-1.670;QD=12.35;ReadPosRankSum=3.005;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:683,0,1076
+chr1	115818	.	G	A	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;DP=53;Dels=0.00;FS=8.267;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=-1.507;QD=12.73;ReadPosRankSum=2.771;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:703,0,1078
+chr1	115819	.	T	A	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;DP=53;Dels=0.00;FS=8.267;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=-1.995;QD=12.52;ReadPosRankSum=2.283;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:692,0,1062
+chr1	115824	.	T	C	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;DP=64;Dels=0.00;FS=0.970;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=3.857;QD=14.17;ReadPosRankSum=1.430;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:35,29:64:99:935,0,1177
+chr1	115872	.	T	C	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;DP=37;Dels=0.00;FS=13.443;HaplotypeScore=16.4306;MLEAC=1;MLEAF=0.500;MQ=56.26;MQ0=0;MQRankSum=-0.564;QD=17.59;ReadPosRankSum=2.362;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:17,20:37:99:679,0,570
+chr1	115884	.	G	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DP=32;Dels=0.00;FS=10.606;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=56.32;MQ0=0;MQRankSum=1.397;QD=13.49;ReadPosRankSum=-2.190;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:17,15:32:99:460,0,582
+chr1	115887	.	A	T	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;DP=30;Dels=0.00;FS=8.202;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=56.17;MQ0=0;MQRankSum=0.395;QD=16.23;ReadPosRankSum=2.058;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:14,16:30:99:515,0,435
+chr1	115890	.	T	C	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;DP=29;Dels=0.00;FS=5.988;HaplotypeScore=5.4965;MLEAC=1;MLEAF=0.500;MQ=56.14;MQ0=0;MQRankSum=-1.060;QD=15.58;ReadPosRankSum=2.211;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:13,15:29:99:480,0,414
+chr1	115900	.	C	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934;DP=29;Dels=0.00;FS=2.129;HaplotypeScore=9.4946;MLEAC=1;MLEAF=0.500;MQ=56.43;MQ0=0;MQRankSum=0.375;QD=1.51;ReadPosRankSum=-2.050;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:24,5:29:72:72,0,793
+chr1	115966	.	T	A	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=49;Dels=0.00;FS=6.121;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=2;MQRankSum=0.798;QD=14.42;ReadPosRankSum=-0.543;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:25,24:49:99:735,0,712
+chr1	115983	.	T	C	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DP=55;Dels=0.00;FS=2.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=1;MQRankSum=-0.139;QD=17.10;ReadPosRankSum=-0.278;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:25,30:55:99:969,0,769
+chr1	115998	.	C	G	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;DP=62;Dels=0.00;FS=5.215;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=1;MQRankSum=0.776;QD=15.22;ReadPosRankSum=-0.747;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:31,31:62:99:972,0,1040
+chr1	116012	.	A	T	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DP=65;Dels=0.00;FS=1.013;HaplotypeScore=4.5213;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=1;MQRankSum=0.189;QD=14.12;ReadPosRankSum=0.486;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:36,29:65:99:946,0,1099
+chr1	116022	.	G	C	2223.77	.	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7333;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=1;QD=34.75;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,62:64:99:2252,175,0
+chr1	116026	.	T	A	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.724;DP=65;Dels=0.00;FS=2.157;HaplotypeScore=2.6644;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=1;MQRankSum=-0.182;QD=16.23;ReadPosRankSum=-0.155;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:30,35:65:99:1083,0,932
+chr1	116035	.	G	T	2393.77	.	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=1;QD=30.09;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2422,181,0
+chr1	116068	.	A	G	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=0;MQRankSum=-1.678;QD=17.75;ReadPosRankSum=-0.070;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:898,0,730
+chr1	116073	.	T	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=57.91;MQ0=0;MQRankSum=-1.194;QD=15.54;ReadPosRankSum=0.884;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:24,26:50:99:805,0,790
+chr1	116082	.	G	A	1794.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=40.8500;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=31.31;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1823,138,0
+chr1	116106	.	C	T	1595.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=54.1245;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=30.04;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1624,120,0
+chr1	116191	.	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.858;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.7255;MLEAC=1;MLEAF=0.500;MQ=57.68;MQ0=0;MQRankSum=0.684;QD=10.49;ReadPosRankSum=-2.599;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:23,17:40:99:448,0,731
+chr1	116284	.	G	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;DP=43;Dels=0.00;FS=1.216;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=50.07;MQ0=2;MQRankSum=-1.787;QD=15.72;ReadPosRankSum=-0.352;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:704,0,696
+chr1	116327	.	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=46.31;MQ0=1;MQRankSum=-3.916;QD=5.32;ReadPosRankSum=0.305;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:23,8:31:99:193,0,788
+chr1	116350	.	T	G	775.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=33.60;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:804,60,0
+chr1	116354	.	A	G	750.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=33.75;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:57:779,57,0
+chr1	116368	.	G	T	687.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DP=24;Dels=0.00;FS=2.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.36;MQ0=0;MQRankSum=2.706;QD=28.66;ReadPosRankSum=1.920;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:3,21:24:26:716,0,26
+chr1	116375	.	G	A	873.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=33.23;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:902,69,0
+chr1	116391	.	T	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;DP=29;Dels=0.00;FS=7.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.81;MQ0=0;MQRankSum=-2.880;QD=4.61;ReadPosRankSum=-0.433;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:22,7:29:99:162,0,816
+chr1	116393	.	A	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;DP=29;Dels=0.00;FS=7.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.81;MQ0=0;MQRankSum=-3.134;QD=4.65;ReadPosRankSum=-0.127;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:22,7:29:99:163,0,804
+chr1	116410	.	T	C	1319.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=30.57;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1348,102,0
+chr1	116422	.	A	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;DP=31;Dels=0.00;FS=12.035;HaplotypeScore=18.3970;MLEAC=1;MLEAF=0.500;MQ=51.97;MQ0=0;MQRankSum=-3.613;QD=9.83;ReadPosRankSum=1.590;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:20,11:31:99:333,0,662
+chr1	116436	.	T	G	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;DP=37;Dels=0.00;FS=10.037;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=54.32;MQ0=0;MQRankSum=-1.109;QD=14.97;ReadPosRankSum=-0.957;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,18:37:99:582,0,665
+chr1	116453	.	C	T	1640.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=26.27;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1669,123,0
+chr1	116488	.	G	A	1609.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=32.29;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1638,123,0
+chr1	116492	.	T	C	1557.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=31.39;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,39:40:99:1586,117,0
+chr1	116493	.	C	T	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=0.670;QD=13.56;ReadPosRankSum=-2.010;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:23,18:41:99:584,0,810
+chr1	116506	.	A	G	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;DP=41;Dels=0.00;FS=2.694;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-2.600;QD=16.68;ReadPosRankSum=-2.058;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,21:41:99:712,0,659
+chr1	116529	.	G	A	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DP=43;Dels=0.00;FS=2.649;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=-3.948;QD=16.90;ReadPosRankSum=2.053;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:21,22:43:99:755,0,724
+chr1	116532	.	C	T	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;DP=43;Dels=0.00;FS=2.649;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=3.827;QD=15.97;ReadPosRankSum=-2.199;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:715,0,752
+chr1	116537	.	C	T	1663.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=26.41;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1692,126,0
+chr1	116554	.	A	C	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;DP=42;Dels=0.00;FS=9.199;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=56.68;MQ0=0;MQRankSum=-3.792;QD=19.64;ReadPosRankSum=0.436;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:17,25:42:99:853,0,555
+chr1	116565	.	C	T	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;DP=41;Dels=0.00;FS=6.909;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=55.92;MQ0=0;MQRankSum=-3.782;QD=20.31;ReadPosRankSum=-0.628;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:16,25:41:99:861,0,489
+chr1	116576	.	G	A	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DP=44;Dels=0.02;FS=4.546;HaplotypeScore=1.9662;MLEAC=1;MLEAF=0.500;MQ=56.64;MQ0=0;MQRankSum=-3.188;QD=18.47;ReadPosRankSum=-0.283;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:18,25:43:99:841,0,592
+chr1	116582	.	A	T	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;DP=48;Dels=0.00;FS=2.552;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=56.93;MQ0=0;MQRankSum=-2.973;QD=19.66;ReadPosRankSum=-0.611;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,29:48:99:972,0,614
+chr1	116595	.	T	G	1623.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=28.53;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1652,129,0
+chr1	116602	.	A	C	1697.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.9914;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=31.72;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1726,138,0
+chr1	116621	.	G	A	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;DP=41;Dels=0.00;FS=2.820;HaplotypeScore=1.9914;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=1.938;QD=12.04;ReadPosRankSum=-1.029;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:25,16:41:99:522,0,880
+chr1	116650	.	A	G	1523.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=1;QD=28.33;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1552,117,0
+chr1	116679	.	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=1;QD=35.33;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1377,105,0
+chr1	116681	.	A	G	1459.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=1;QD=30.38;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1488,114,0
+chr1	116708	.	T	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=53.97;MQ0=0;MQRankSum=-0.735;QD=6.64;ReadPosRankSum=0.035;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:17,6:23:99:181,0,612
+chr1	116711	.	T	C	651.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=20.1188;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=30.82;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:51:680,51,0
+chr1	116712	.	G	A	681.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=20.1188;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=29.36;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:54:710,54,0
+chr1	116724	.	T	A	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.41;MQ0=0;MQRankSum=-0.054;QD=21.55;ReadPosRankSum=-2.007;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:6,10:16:99:373,0,200
+chr1	116728	.	T	A	622.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=28.11;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:48:651,48,0
+chr1	116732	.	A	G	647.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=27.29;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:676,51,0
+chr1	116749	.	A	T	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.320;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.87;MQ0=0;MQRankSum=-0.553;QD=15.18;ReadPosRankSum=0.456;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:26,24:50:99:787,0,824
+chr1	116757	.	G	A	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.11;MQ0=0;MQRankSum=0.743;QD=12.68;ReadPosRankSum=1.259;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:25,23:48:99:637,0,796
+chr1	116793	.	G	C	1565.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=26.79;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1594,120,0
+chr1	116804	.	T	C	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=0.704;QD=12.06;ReadPosRankSum=0.418;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:26,18:44:99:559,0,846
+chr1	116809	.	G	A	1767.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=35.74;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1796,138,0
+chr1	116816	.	A	T	1677.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=29.28;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1706,129,0
+chr1	116822	.	T	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;DP=39;Dels=0.00;FS=1.310;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-0.493;QD=13.92;ReadPosRankSum=1.507;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:21,18:39:99:571,0,715
+chr1	116824	.	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=28.30;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1327,99,0
+chr1	116906	.	C	A	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;DP=45;Dels=0.00;FS=1.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-0.149;QD=12.02;ReadPosRankSum=-2.562;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:26,19:45:99:569,0,916
+chr1	116917	.	A	G	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;DP=47;Dels=0.00;FS=1.154;HaplotypeScore=1.9931;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=-0.501;QD=12.89;ReadPosRankSum=-2.505;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:634,0,880
+chr1	116943	.	A	G	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQ0=0;MQRankSum=-0.695;QD=18.14;ReadPosRankSum=-2.536;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:21,26:47:99:881,0,663
+chr1	116949	.	G	A	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=0.854;QD=13.97;ReadPosRankSum=3.146;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:713,0,926
+chr1	116959	.	G	A	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;DP=55;Dels=0.00;FS=1.029;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=1.355;QD=14.94;ReadPosRankSum=2.113;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:28,27:55:99:850,0,924
+chr1	116971	.	G	A	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.651;DP=50;Dels=0.00;FS=2.386;HaplotypeScore=3.2789;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=-0.283;QD=17.90;ReadPosRankSum=0.870;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:22,28:50:99:923,0,717
+chr1	117007	.	C	T	1395.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=29.86;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1424,114,0
+chr1	117050	.	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=0.324;QD=6.57;ReadPosRankSum=-1.528;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:14,5:19:99:153,0,501
+chr1	117051	.	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-0.099;QD=7.10;ReadPosRankSum=-1.971;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:13,5:18:99:156,0,470
+chr1	117054	.	T	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.971;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-0.887;QD=7.26;ReadPosRankSum=-1.183;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:13,5:18:99:159,0,429
+chr1	117071	.	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=-1.164;QD=9.79;ReadPosRankSum=0.783;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:18,12:30:99:322,0,621
+chr1	117077	.	G	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;DP=33;Dels=0.00;FS=1.434;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=0;MQRankSum=1.029;QD=10.75;ReadPosRankSum=1.740;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:21,12:33:99:383,0,738
+chr1	117104	.	C	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-2.211;QD=13.17;ReadPosRankSum=-0.335;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:30,21:51:99:700,0,1034
+chr1	117130	.	C	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;DP=72;Dels=0.00;FS=18.205;HaplotypeScore=5.9991;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=4;MQRankSum=-4.097;QD=0.80;ReadPosRankSum=-0.505;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:61,11:72:86:86,0,2246
+chr1	117148	.	G	T	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.7758;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=1;MQRankSum=0.824;QD=14.65;ReadPosRankSum=1.709;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:39,35:74:99:1112,0,1310
+chr1	117150	.	C	T	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;DP=75;Dels=0.00;FS=0.883;HaplotypeScore=8.7758;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=1;MQRankSum=0.114;QD=14.84;ReadPosRankSum=1.763;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:40,35:75:99:1141,0,1350
+chr1	117157	.	A	G	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;DP=75;Dels=0.00;FS=1.938;HaplotypeScore=5.7880;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=1;MQRankSum=0.827;QD=16.04;ReadPosRankSum=2.028;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:38,37:75:99:1231,0,1283
+chr1	117161	.	G	A	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;DP=76;Dels=0.00;FS=3.158;HaplotypeScore=3.9994;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-1.545;QD=17.46;ReadPosRankSum=0.900;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:36,40:76:99:1355,0,1228
+chr1	117175	.	T	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;DP=78;Dels=0.00;FS=22.021;HaplotypeScore=9.9969;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=0.164;QD=3.19;ReadPosRankSum=-2.376;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:58,12:78:99:277,0,2135
+chr1	117193	.	G	A	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DP=65;Dels=0.00;FS=7.705;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-0.404;QD=13.73;ReadPosRankSum=-0.470;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:37,28:65:99:921,0,1261
+chr1	117202	.	G	T	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DP=61;Dels=0.00;FS=10.025;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=58.26;MQ0=0;MQRankSum=1.292;QD=12.16;ReadPosRankSum=0.170;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:37,24:61:99:770,0,1299
+chr1	117240	.	G	A	248.8	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:21:277,21,0
+chr1	117248	.	A	G	170.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.18;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
+chr1	117260	.	C	G	86.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.76;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
+chr1	117286	.	A	G	714.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.70;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:57:743,57,0
+chr1	117350	.	A	T	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;DP=63;Dels=0.00;FS=4.058;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=52.64;MQ0=0;MQRankSum=-6.819;QD=13.96;ReadPosRankSum=-3.447;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:33,30:63:99:908,0,1176
+chr1	117353	.	G	A	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;DP=62;Dels=0.00;FS=6.115;HaplotypeScore=4.6334;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=6.744;QD=18.04;ReadPosRankSum=2.271;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:29,33:62:99:1147,0,898
+chr1	117361	.	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;DP=50;Dels=0.00;FS=2.729;HaplotypeScore=10.5317;MLEAC=1;MLEAF=0.500;MQ=56.03;MQ0=0;MQRankSum=-5.755;QD=9.76;ReadPosRankSum=1.270;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:33,17:50:99:516,0,1175
+chr1	117411	.	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;DP=23;Dels=0.00;FS=39.846;HaplotypeScore=10.9973;MLEAC=1;MLEAF=0.500;MQ=46.04;MQ0=1;MQRankSum=-3.989;QD=6.82;ReadPosRankSum=-2.011;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:12,11:23:99:185,0,421
+chr1	117420	.	A	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=24;Dels=0.00;FS=41.720;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.07;MQ0=1;MQRankSum=-4.093;QD=9.03;ReadPosRankSum=-0.092;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:11,13:24:99:245,0,370
+chr1	117422	.	G	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DP=24;Dels=0.00;FS=41.720;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.07;MQ0=1;MQRankSum=-4.093;QD=9.03;ReadPosRankSum=0.215;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:11,13:24:99:245,0,369
+chr1	117438	.	G	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;DP=32;Dels=0.00;FS=52.903;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.12;MQ0=1;MQRankSum=-3.851;QD=17.24;ReadPosRankSum=-1.153;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,23:32:99:580,0,237
+chr1	117455	.	T	A,G	486.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.25;MQ0=1;QD=24.31;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/2:0,9,11:20:99:628,311,284,317,0,287
+chr1	117461	.	G	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.770;DP=16;Dels=0.00;FS=28.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=1;MQRankSum=-2.298;QD=9.92;ReadPosRankSum=1.591;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,7:16:99:187,0,309
+chr1	117462	.	T	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;DP=16;Dels=0.00;FS=28.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=1;MQRankSum=-2.887;QD=9.92;ReadPosRankSum=1.827;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,7:16:99:187,0,285
+chr1	117464	.	C	T	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.652;DP=16;Dels=0.00;FS=28.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=1;MQRankSum=-2.652;QD=9.92;ReadPosRankSum=1.709;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,7:16:99:187,0,285
+chr1	117465	.	T	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.416;DP=16;Dels=0.00;FS=28.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=1;MQRankSum=-2.062;QD=9.86;ReadPosRankSum=1.355;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,7:16:99:186,0,295
+chr1	117467	.	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.550;DP=18;Dels=0.00;FS=28.543;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=54.57;MQ0=1;MQRankSum=-3.224;QD=12.82;ReadPosRankSum=0.241;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:9,9:18:99:259,0,257
+chr1	117527	.	C	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;DP=38;Dels=0.00;FS=14.618;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=55.38;MQ0=2;MQRankSum=-4.256;QD=7.26;ReadPosRankSum=2.631;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:27,11:38:99:304,0,852
+chr1	117551	.	C	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;DP=19;Dels=0.00;FS=5.815;HaplotypeScore=15.9941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.750;QD=3.88;ReadPosRankSum=-1.750;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:15,4:19:99:102,0,544
+chr1	117615	.	A	C	375.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.38;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:30:404,30,0
+chr1	117624	.	G	A	445.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.19;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:36:474,36,0
+chr1	117647	.	T	G	493.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=29.12;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,14:14:39:522,39,0
+chr1	117656	.	A	G	537.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=29.60;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,14:14:42:566,42,0
+chr1	117663	.	A	T	499.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.68;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:39:528,39,0
+chr1	117688	.	T	C	420.53	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;QD=32.35;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,12:13:36:488,36,0
+chr1	117772	.	T	G	238.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=2;QD=23.88;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:21:267,21,0
+chr1	117777	.	A	G	238.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=2;QD=23.88;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:21:267,21,0
+chr1	117778	.	A	G	238.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=2;QD=23.88;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:21:267,21,0
+chr1	117787	.	C	T	195.84	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=2;QD=21.76;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:18:224,18,0
+chr1	117923	.	C	T	159.9	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.922;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=3;MQRankSum=1.495;QD=15.99;ReadPosRankSum=-1.495;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:5,5:10:15:188,15,0
+chr1	117938	.	T	A	245.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=2;QD=24.58;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:2,8:10:21:274,21,0
+chr1	117939	.	T	C	282.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=2;QD=28.28;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:2,8:10:24:311,24,0
+chr1	117954	.	T	G	632.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=2;QD=33.30;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:51:661,51,0
+chr1	117967	.	C	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;DP=31;Dels=0.00;FS=12.308;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.54;MQ0=2;MQRankSum=-0.465;QD=11.99;ReadPosRankSum=-4.539;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,12:31:99:400,0,581
+chr1	117972	.	C	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;DP=31;Dels=0.00;FS=12.308;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.54;MQ0=2;MQRankSum=-0.686;QD=12.02;ReadPosRankSum=-4.539;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:19,12:31:99:401,0,578
+chr1	117996	.	T	C	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;DP=34;Dels=0.00;FS=8.609;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.71;MQ0=2;MQRankSum=-1.468;QD=9.26;ReadPosRankSum=0.635;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:23,11:34:99:343,0,658
+chr1	118063	.	A	G	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.05;MQ0=0;MQRankSum=3.026;QD=21.04;ReadPosRankSum=3.377;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:6,13:19:36:428,0,36
+chr1	118067	.	T	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=50.20;MQ0=0;MQRankSum=3.170;QD=19.49;ReadPosRankSum=3.566;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:7,13:20:60:418,0,60
+chr1	118068	.	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=50.20;MQ0=0;MQRankSum=3.170;QD=19.49;ReadPosRankSum=3.487;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:7,13:20:69:418,0,69
+chr1	118069	.	G	A	26.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=52.31;MQ0=0;MQRankSum=-3.541;QD=1.07;ReadPosRankSum=-1.362;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:18,7:25:55:55,0,547
+chr1	118098	.	G	A	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DP=32;Dels=0.00;FS=5.979;HaplotypeScore=17.1556;MLEAC=1;MLEAF=0.500;MQ=54.87;MQ0=0;MQRankSum=3.923;QD=21.06;ReadPosRankSum=-0.468;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:10,22:32:99:702,0,186
+chr1	118118	.	A	G	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;DP=42;Dels=0.00;FS=2.745;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=55.75;MQ0=0;MQRankSum=2.888;QD=19.30;ReadPosRankSum=-0.117;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:16,26:42:99:839,0,403
+chr1	118122	.	C	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-1.111;QD=9.81;ReadPosRankSum=-0.447;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:24,15:39:99:411,0,831
+chr1	118131	.	A	G	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;DP=44;Dels=0.00;FS=2.548;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.24;MQ0=0;MQRankSum=-0.837;QD=12.65;ReadPosRankSum=-1.638;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:585,0,736
+chr1	118140	.	T	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-3.047;QD=12.91;ReadPosRankSum=-0.299;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:26,20:46:99:622,0,857
+chr1	118262	.	C	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.037;QD=21.49;ReadPosRankSum=2.452;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:16,28:44:99:974,0,497
+chr1	118324	.	A	G	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=-1.355;QD=10.63;ReadPosRankSum=-2.135;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:28,19:47:99:528,0,851
+chr1	118347	.	T	A	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DP=42;Dels=0.00;FS=5.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.69;MQ0=0;MQRankSum=-0.125;QD=22.54;ReadPosRankSum=0.181;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:12,30:42:99:975,0,281
+chr1	118393	.	C	G	1571.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.1872;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=30.09;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1600,120,0
+chr1	118394	.	C	G	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;DP=43;Dels=0.00;FS=9.242;HaplotypeScore=4.1872;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=1.960;QD=15.99;ReadPosRankSum=0.524;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	0/1:20,23:43:99:716,0,621
+chr1	118403	.	G	A	1580.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=41.1140;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=27.67;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1609,123,0
+chr1	118423	.	C	A,T	1500.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.60;MQ0=0;QD=30.62;EFF=UPSTREAM(MODIFIER||||Cc01g00080|mRNA||GSCOCT00012431001|)	GT:AD:DP:GQ:PL	1/2:0,26,23:49:99:1727,749,670,978,0,915
+chr1	118436	.	T	A	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;DP=53;Dels=0.00;FS=5.783;HaplotypeScore=2.6648;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=0.756;QD=14.47;ReadPosRankSum=-1.770;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:27,26:53:99:795,0,854
+chr1	118461	.	T	C	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DP=47;Dels=0.00;FS=1.192;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=3;MQRankSum=1.167;QD=15.68;ReadPosRankSum=-1.190;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,27:47:99:765,0,667
+chr1	118483	.	G	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=44;Dels=0.00;FS=4.457;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=57.11;MQ0=3;MQRankSum=-1.011;QD=12.18;ReadPosRankSum=0.197;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,21:44:99:564,0,783
+chr1	118552	.	C	T	844.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,23:23:66:873,66,0
+chr1	118569	.	G	A	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DP=29;Dels=0.00;FS=5.142;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=54.85;MQ0=0;MQRankSum=-3.742;QD=0.68;ReadPosRankSum=-3.419;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,6:29:48:48,0,779
+chr1	118577	.	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.12;MQ0=0;MQRankSum=-3.972;QD=1.53;ReadPosRankSum=-1.520;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,7:30:74:74,0,821
+chr1	118586	.	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;DP=28;Dels=0.00;FS=1.906;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=-4.094;QD=3.21;ReadPosRankSum=-0.992;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,8:28:99:118,0,717
+chr1	118591	.	C	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DP=26;Dels=0.00;FS=4.471;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=3.972;QD=23.84;ReadPosRankSum=0.806;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:8,18:26:99:648,0,124
+chr1	118613	.	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DP=23;Dels=0.00;FS=4.419;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=51.81;MQ0=0;MQRankSum=-3.748;QD=6.56;ReadPosRankSum=3.244;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:14,9:23:99:179,0,510
+chr1	118618	.	T	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;DP=23;Dels=0.00;FS=4.419;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=-3.181;QD=6.60;ReadPosRankSum=3.370;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:14,9:23:99:180,0,492
+chr1	118625	.	T	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DP=18;Dels=0.00;FS=4.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=0;MQRankSum=-2.950;QD=6.32;ReadPosRankSum=2.763;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:12,6:18:99:142,0,434
+chr1	118632	.	G	T	625.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.6647;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=34.76;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,18:18:51:654,51,0
+chr1	118676	.	G	T	1157.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=30.42;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1186,90,0
+chr1	118776	.	A	G	1200.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=23.9732;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=33.35;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,35:36:99:1229,99,0
+chr1	118792	.	T	A	957.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=15.9088;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=28.12;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,25:25:75:986,75,0
+chr1	118793	.	T	A	946.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=15.9088;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=32.62;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,25:25:75:975,75,0
+chr1	118806	.	G	A	1063.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=31.10;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1092,84,0
+chr1	118812	.	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.64;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1064,84,0
+chr1	118868	.	G	A	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.61;MQ0=0;MQRankSum=-4.743;QD=17.09;ReadPosRankSum=1.211;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:14,17:31:99:558,0,461
+chr1	118880	.	C	T	637.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.7335;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=33.88;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:666,51,0
+chr1	118885	.	A	G	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.7335;MLEAC=1;MLEAF=0.500;MQ=57.62;MQ0=0;MQRankSum=1.002;QD=15.42;ReadPosRankSum=-0.530;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:6,9:16:99:275,0,201
+chr1	118899	.	A	G	656.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=30.20;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,18:18:51:685,51,0
+chr1	118943	.	A	G	601.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=6;QD=23.14;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:5,21:26:48:630,48,0
+chr1	118947	.	T	A	569.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=6;QD=22.79;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:5,20:25:45:598,45,0
+chr1	118954	.	C	T	416.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=6;QD=19.85;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:5,16:21:33:445,33,0
+chr1	118958	.	C	T	374.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=6;QD=18.74;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:5,15:20:30:403,30,0
+chr1	118973	.	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.10;MQ0=1;MQRankSum=-0.456;QD=17.38;ReadPosRankSum=2.100;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:2,13:15:48:289,0,48
+chr1	118991	.	C	T	229.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.347;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.50;MQ0=1;MQRankSum=1.561;QD=10.94;ReadPosRankSum=-1.734;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:1,20:21:33:258,33,0
+chr1	119018	.	C	T	229.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.520;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.12;MQ0=5;MQRankSum=1.561;QD=9.19;ReadPosRankSum=-1.734;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:5,20:25:33:258,33,0
+chr1	119028	.	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;DP=28;Dels=0.00;FS=5.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.29;MQ0=5;MQRankSum=2.693;QD=1.21;ReadPosRankSum=-2.784;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,3:28:62:62,0,217
+chr1	119038	.	C	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;DP=27;Dels=0.00;FS=5.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=5;MQRankSum=2.679;QD=2.07;ReadPosRankSum=-2.775;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,3:27:84:84,0,217
+chr1	119044	.	T	A	84.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.727;QD=21.19;ReadPosRankSum=0.727;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:1,3:4:27:113,0,27
+chr1	119050	.	A	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.727;QD=20.94;ReadPosRankSum=0.727;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:1,3:4:28:112,0,28
+chr1	119051	.	C	G	125.03	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.26;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
+chr1	119228	.	A	C	261.8	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=30.03;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,7:7:21:290,21,0
+chr1	119229	.	G	A	301.78	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=33.85;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,8:8:24:330,24,0
+chr1	119234	.	G	A	305.78	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=26.59;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,8:8:24:334,24,0
+chr1	119294	.	T	A	812.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=26.17;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,22:22:63:841,63,0
+chr1	119318	.	T	C	804.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=19.9457;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=34.99;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,23:23:63:833,63,0
+chr1	119339	.	A	G	715.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.07;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,19:19:57:744,57,0
+chr1	119555	.	C	A	1140.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.523;QD=34.57;ReadPosRankSum=-1.628;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:1,32:33:96:1169,96,0
+chr1	119677	.	C	T	48.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=0.736;QD=16.25;ReadPosRankSum=-0.736;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:1,2:3:6:76,6,0
+chr1	119803	.	C	T	34.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=17.37;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
+chr1	119816	.	G	A	33.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=16.87;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
+chr1	119819	.	C	T	32.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=16.37;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:60,6,0
+chr1	119830	.	A	G	36.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=18.37;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
+chr1	119840	.	C	T	68.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=22.76;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,3:3:9:96,9,0
+chr1	119841	.	T	C	65.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=21.76;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
+chr1	119862	.	G	T	73.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=24.43;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,3:3:9:101,9,0
+chr1	119869	.	T	C	73.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=24.43;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,3:3:9:101,9,0
+chr1	119921	.	A	T	289.78	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.65;MQ0=0;QD=30.13;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,8:8:24:318,24,0
+chr1	119961	.	G	C	77.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=65.19;MQ0=0;MQRankSum=0.727;QD=19.44;ReadPosRankSum=0.727;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:1,3:4:26:106,0,26
+chr1	119977	.	T	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DP=13;Dels=0.00;FS=9.792;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=-1.466;QD=19.52;ReadPosRankSum=0.849;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:4,9:13:99:282,0,121
+chr1	120103	.	C	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DP=41;Dels=0.00;FS=9.770;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=0.468;QD=3.29;ReadPosRankSum=1.299;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:34,7:41:99:163,0,1266
+chr1	120119	.	G	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;DP=37;Dels=0.00;FS=4.862;HaplotypeScore=2.9458;MLEAC=1;MLEAF=0.500;MQ=60.29;MQ0=0;MQRankSum=0.258;QD=14.67;ReadPosRankSum=-0.623;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:18,19:37:99:571,0,599
+chr1	120128	.	T	C	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;DP=34;Dels=0.00;FS=3.329;HaplotypeScore=1.9459;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=1;MQRankSum=1.099;QD=15.88;ReadPosRankSum=-0.594;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:16,18:34:99:568,0,540
+chr1	120143	.	T	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;DP=27;Dels=0.00;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=1;MQRankSum=1.487;QD=14.95;ReadPosRankSum=0.154;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:13,14:27:99:432,0,438
+chr1	120179	.	C	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=1;MQRankSum=-0.517;QD=13.45;ReadPosRankSum=0.680;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:14,12:26:99:378,0,440
+chr1	120186	.	T	C	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=1;MQRankSum=-0.268;QD=12.74;ReadPosRankSum=0.903;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:16,12:28:99:385,0,463
+chr1	120227	.	C	T	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;DP=38;Dels=0.00;FS=5.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=1;MQRankSum=1.322;QD=15.28;ReadPosRankSum=-1.565;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,18:38:99:609,0,620
+chr1	120238	.	T	C	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;DP=41;Dels=0.00;FS=7.160;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=1;MQRankSum=-0.231;QD=16.41;ReadPosRankSum=0.177;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:18,23:41:99:701,0,597
+chr1	120278	.	C	A	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;DP=49;Dels=0.00;FS=4.269;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=1;MQRankSum=0.282;QD=18.55;ReadPosRankSum=-0.366;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,29:49:99:937,0,665
+chr1	120311	.	T	C	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;DP=42;Dels=0.00;FS=1.163;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.780;QD=16.54;ReadPosRankSum=0.101;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:723,0,713
+chr1	120315	.	G	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.036;QD=15.72;ReadPosRankSum=0.158;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:704,0,762
+chr1	120371	.	T	C	692.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,19:19:54:721,54,0
+chr1	120437	.	C	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;DP=32;Dels=0.00;FS=22.212;HaplotypeScore=1.9985;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=-1.284;QD=14.02;ReadPosRankSum=-0.340;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:17,15:32:99:477,0,541
+chr1	120508	.	C	T	1393.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=30.77;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1422,108,0
+chr1	120513	.	C	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DP=35;Dels=0.00;FS=5.287;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=-1.317;QD=12.48;ReadPosRankSum=0.883;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,15:35:99:465,0,629
+chr1	120525	.	G	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DP=32;Dels=0.00;FS=5.486;HaplotypeScore=1.3123;MLEAC=1;MLEAF=0.500;MQ=55.77;MQ0=1;MQRankSum=0.337;QD=12.46;ReadPosRankSum=0.576;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:17,15:32:99:427,0,557
+chr1	120532	.	T	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;DP=34;Dels=0.00;FS=7.806;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=55.37;MQ0=1;MQRankSum=-0.055;QD=11.26;ReadPosRankSum=0.856;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:19,15:34:99:411,0,622
+chr1	120546	.	C	A	1112.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=1;QD=34.77;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1141,90,0
+chr1	120550	.	C	G	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DP=33;Dels=0.00;FS=3.269;HaplotypeScore=2.4595;MLEAC=1;MLEAF=0.500;MQ=55.36;MQ0=1;MQRankSum=-0.422;QD=10.60;ReadPosRankSum=0.806;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:19,14:33:99:378,0,603
+chr1	120567	.	A	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=25;Dels=0.00;FS=2.671;HaplotypeScore=15.7066;MLEAC=1;MLEAF=0.500;MQ=53.60;MQ0=1;MQRankSum=-2.312;QD=2.43;ReadPosRankSum=1.987;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:19,5:25:89:89,0,628
+chr1	120592	.	G	C	609.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.9995;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=31.95;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:638,51,0
+chr1	120670	.	A	G	746.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=33.94;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,22:22:60:775,60,0
+chr1	120698	.	C	T	666.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=0;MQRankSum=2.693;QD=28.98;ReadPosRankSum=0.959;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:3,20:23:3:693,0,3
+chr1	120702	.	G	A	755.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=34.35;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,22:22:63:784,63,0
+chr1	120717	.	T	C	686.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=34.34;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,20:20:57:715,57,0
+chr1	120722	.	T	C	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=46.92;MQ0=0;MQRankSum=3.000;QD=28.23;ReadPosRankSum=-0.403;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:4,17:21:43:621,0,43
+chr1	120723	.	G	T	738.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=32.21;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,21:21:60:767,60,0
+chr1	120725	.	G	T	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=46.92;MQ0=0;MQRankSum=-3.090;QD=0.71;ReadPosRankSum=0.224;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:17,4:21:43:43,0,578
+chr1	120730	.	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DP=23;Dels=0.00;FS=1.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=0;MQRankSum=-2.065;QD=3.77;ReadPosRankSum=-0.805;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:17,6:23:99:115,0,600
+chr1	120744	.	C	A	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;DP=27;Dels=0.00;FS=1.574;HaplotypeScore=6.9985;MLEAC=1;MLEAF=0.500;MQ=46.78;MQ0=0;MQRankSum=1.604;QD=19.32;ReadPosRankSum=0.864;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:11,16:27:99:550,0,301
+chr1	120759	.	T	C	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.96;MQ0=0;MQRankSum=-0.367;QD=15.57;ReadPosRankSum=-1.347;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:9,10:19:99:324,0,285
+chr1	120764	.	T	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.60;MQ0=0;MQRankSum=-0.599;QD=13.70;ReadPosRankSum=0.951;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:11,10:21:99:316,0,375
+chr1	120777	.	C	T	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=46.44;MQ0=0;MQRankSum=1.257;QD=12.14;ReadPosRankSum=-0.018;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:19,14:33:99:429,0,613
+chr1	120780	.	G	A	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=46.32;MQ0=0;MQRankSum=0.960;QD=11.94;ReadPosRankSum=0.354;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,14:35:99:446,0,633
+chr1	120787	.	A	G	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.328;DP=39;Dels=0.00;FS=1.273;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=48.62;MQ0=0;MQRankSum=-1.898;QD=14.64;ReadPosRankSum=2.102;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:19,19:39:99:599,0,603
+chr1	120802	.	T	C	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;DP=45;Dels=0.00;FS=2.555;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=0;MQRankSum=-3.970;QD=16.39;ReadPosRankSum=1.331;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,24:45:99:766,0,656
+chr1	120813	.	A	T	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;DP=45;Dels=0.00;FS=1.154;HaplotypeScore=13.9933;MLEAC=1;MLEAF=0.500;MQ=52.02;MQ0=0;MQRankSum=4.507;QD=14.68;ReadPosRankSum=-0.102;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,22:45:99:689,0,762
+chr1	120816	.	A	G	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;DP=41;Dels=0.00;FS=2.837;HaplotypeScore=13.9933;MLEAC=1;MLEAF=0.500;MQ=51.82;MQ0=0;MQRankSum=-4.264;QD=15.31;ReadPosRankSum=0.639;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,20:41:99:656,0,729
+chr1	120820	.	T	C	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DP=40;Dels=0.00;FS=2.785;HaplotypeScore=13.9933;MLEAC=1;MLEAF=0.500;MQ=52.25;MQ0=0;MQRankSum=-4.361;QD=15.12;ReadPosRankSum=1.517;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,19:40:99:633,0,684
+chr1	120826	.	A	G	1504.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=13.9933;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=34.96;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1533,114,0
+chr1	120838	.	A	C	1759.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=1;QD=34.54;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1788,135,0
+chr1	120862	.	T	C	1676.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=1;QD=31.05;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1705,132,0
+chr1	120875	.	C	T	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.870;DP=43;Dels=0.00;FS=4.561;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=1;MQRankSum=-5.022;QD=11.48;ReadPosRankSum=2.076;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,18:43:99:522,0,781
+chr1	120891	.	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;DP=23;Dels=0.00;FS=9.132;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.13;MQ0=0;MQRankSum=-3.019;QD=3.16;ReadPosRankSum=1.155;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:18,5:23:99:101,0,602
+chr1	120906	.	C	A	986.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=18.7330;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=1;QD=27.45;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1015,78,0
+chr1	120925	.	T	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.81;MQ0=1;MQRankSum=-1.123;QD=12.24;ReadPosRankSum=0.578;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,16:37:99:481,0,688
+chr1	120936	.	T	A	1380.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=1;QD=27.06;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1409,108,0
+chr1	120960	.	G	C	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.936;DP=43;Dels=0.00;FS=2.659;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQ0=1;MQRankSum=-1.055;QD=18.34;ReadPosRankSum=-1.309;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:19,24:43:99:817,0,617
+chr1	120966	.	T	C	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=1;MQRankSum=-1.213;QD=16.55;ReadPosRankSum=-0.480;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,23:43:99:740,0,631
+chr1	120969	.	G	A	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;DP=43;Dels=0.00;FS=1.149;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=1;MQRankSum=1.322;QD=15.13;ReadPosRankSum=-0.340;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:679,0,731
+chr1	120992	.	C	T	1474.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=1;QD=25.94;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1503,111,0
+chr1	120994	.	C	G	1506.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=33.17;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1535,114,0
+chr1	121003	.	A	G	1781.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=30.81;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1810,135,0
+chr1	121015	.	T	C	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.582;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=0.989;QD=17.38;ReadPosRankSum=0.659;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:25,27:52:99:932,0,820
+chr1	121034	.	T	C	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DP=49;Dels=0.00;FS=1.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-0.850;QD=16.97;ReadPosRankSum=0.370;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,25:49:99:860,0,817
+chr1	121052	.	G	A	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DP=46;Dels=0.00;FS=8.862;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-0.022;QD=16.80;ReadPosRankSum=0.681;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:801,0,734
+chr1	121087	.	G	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DP=40;Dels=0.00;FS=5.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=0;MQRankSum=0.924;QD=8.42;ReadPosRankSum=0.579;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,16:40:99:365,0,767
+chr1	121102	.	G	T	1242.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=33.06;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1271,99,0
+chr1	121118	.	T	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DP=22;Dels=0.00;FS=7.025;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.06;MQ0=0;MQRankSum=-0.692;QD=16.94;ReadPosRankSum=0.890;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:10,12:22:99:401,0,296
+chr1	121148	.	G	A	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DP=27;Dels=0.00;FS=9.204;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=57.69;MQ0=0;MQRankSum=-0.655;QD=15.92;ReadPosRankSum=-0.849;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:13,14:27:99:458,0,425
+chr1	121152	.	T	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.256;DP=26;Dels=0.00;FS=6.455;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.10;MQ0=0;MQRankSum=-0.923;QD=15.84;ReadPosRankSum=-0.821;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:13,13:26:99:440,0,417
+chr1	121153	.	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;DP=26;Dels=0.00;FS=6.455;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.10;MQ0=0;MQRankSum=-0.615;QD=15.76;ReadPosRankSum=-0.872;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:13,13:26:99:438,0,430
+chr1	121409	.	T	C	11.83	LowQual	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=11.83;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,1:1:3:38,3,0
+chr1	121415	.	G	A	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.544;DP=32;Dels=0.00;FS=8.557;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.15;MQ0=0;MQRankSum=-2.657;QD=11.24;ReadPosRankSum=-0.094;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:16,16:32:99:388,0,539
+chr1	121429	.	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=22.24;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1604,126,0
+chr1	121448	.	T	C	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;DP=43;Dels=0.00;FS=11.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.05;MQ0=0;MQRankSum=3.811;QD=14.79;ReadPosRankSum=0.158;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,20:43:99:664,0,751
+chr1	121451	.	G	A	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;DP=43;Dels=0.00;FS=11.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.05;MQ0=0;MQRankSum=-3.859;QD=16.34;ReadPosRankSum=0.816;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,23:43:99:731,0,659
+chr1	121462	.	T	A	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DP=40;Dels=0.00;FS=9.593;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.80;MQ0=0;MQRankSum=-4.391;QD=16.62;ReadPosRankSum=0.204;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:18,22:40:99:693,0,595
+chr1	121471	.	G	C	11.83	LowQual	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.49;MQ0=14;QD=0.79;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:14,1:15:3:38,3,0
+chr1	122095	.	T	C	15.65	LowQual	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.65;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
+chr1	122148	.	T	G	1209.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=35.61;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1238,93,0
+chr1	122173	.	G	T	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;DP=41;Dels=0.00;FS=1.248;HaplotypeScore=3.6993;MLEAC=1;MLEAF=0.500;MQ=57.38;MQ0=0;MQRankSum=0.176;QD=15.77;ReadPosRankSum=0.311;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,20:41:99:675,0,610
+chr1	122179	.	T	C	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;DP=44;Dels=0.00;FS=2.744;HaplotypeScore=2.7126;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=-0.813;QD=14.45;ReadPosRankSum=1.190;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:664,0,726
+chr1	122203	.	A	C	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.51;MQ0=0;MQRankSum=-2.415;QD=16.76;ReadPosRankSum=0.352;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:732,0,674
+chr1	122216	.	C	G	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;DP=41;Dels=0.00;FS=2.755;HaplotypeScore=32.8942;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=-1.343;QD=15.60;ReadPosRankSum=-0.117;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:21,20:41:99:668,0,646
+chr1	122277	.	T	C	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=8.4826;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=0;MQRankSum=1.650;QD=9.49;ReadPosRankSum=2.750;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,10:30:99:313,0,658
+chr1	122295	.	G	A	1172.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=26.60;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1201,90,0
+chr1	122297	.	G	A	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DP=32;Dels=0.00;FS=3.151;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=0.564;QD=11.15;ReadPosRankSum=2.511;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:20,12:32:99:385,0,654
+chr1	122301	.	C	T	1251.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=36.50;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,32:32:93:1280,93,0
+chr1	122383	.	C	T	1913.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.00;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1942,144,0
+chr1	122415	.	G	A	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;DP=43;Dels=0.00;FS=2.661;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.30;MQ0=0;MQRankSum=-0.135;QD=13.41;ReadPosRankSum=-0.746;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:24,19:43:99:605,0,828
+chr1	122424	.	G	A	1618.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=29.06;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1647,129,0
+chr1	122430	.	G	A	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DP=43;Dels=0.00;FS=6.548;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.37;MQ0=1;MQRankSum=0.216;QD=18.23;ReadPosRankSum=-0.928;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:19,24:43:99:812,0,558
+chr1	122455	.	G	A,T	921.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=45.04;MQ0=2;QD=24.90;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/2:0,20,17:37:99:1105,544,493,561,0,513
+chr1	122456	.	G	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;DP=37;Dels=0.00;FS=5.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.04;MQ0=2;MQRankSum=-0.480;QD=12.51;ReadPosRankSum=-0.712;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:17,20:37:99:491,0,496
+chr1	122464	.	G	A	961.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=2;QD=30.06;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,32:32:84:990,84,0
+chr1	122469	.	A	G	726.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.29;MQ0=2;QD=27.95;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,26:26:66:755,66,0
+chr1	122471	.	G	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=26;Dels=0.00;FS=3.892;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=37.29;MQ0=2;MQRankSum=1.101;QD=11.64;ReadPosRankSum=-0.811;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:14,12:26:99:331,0,295
+chr1	122483	.	G	A	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.303;DP=23;Dels=0.00;FS=4.036;HaplotypeScore=10.7857;MLEAC=1;MLEAF=0.500;MQ=35.66;MQ0=2;MQRankSum=-2.429;QD=8.34;ReadPosRankSum=2.429;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:11,12:23:99:220,0,312
+chr1	122487	.	T	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;DP=20;Dels=0.05;FS=1.957;HaplotypeScore=10.7857;MLEAC=1;MLEAF=0.500;MQ=31.84;MQ0=2;MQRankSum=-2.454;QD=6.64;ReadPosRankSum=2.742;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:9,10:19:99:161,0,242
+chr1	122498	.	T	C	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9968;MLEAC=1;MLEAF=0.500;MQ=48.55;MQ0=1;MQRankSum=0.407;QD=14.02;ReadPosRankSum=-0.039;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:23,19:42:99:617,0,646
+chr1	122513	.	T	G	1544.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=1;QD=34.33;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1573,120,0
+chr1	122548	.	C	T	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;DP=35;Dels=0.00;FS=1.445;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=56.13;MQ0=0;MQRankSum=0.791;QD=19.42;ReadPosRankSum=2.576;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:14,21:35:99:708,0,420
+chr1	122565	.	A	T	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DP=37;Dels=0.00;FS=7.957;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=0.391;QD=20.07;ReadPosRankSum=-0.673;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:14,23:37:99:771,0,457
+chr1	122594	.	G	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=54;Dels=0.00;FS=2.373;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.37;MQ0=0;MQRankSum=0.177;QD=12.25;ReadPosRankSum=2.129;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:33,21:54:99:690,0,1043
+chr1	122607	.	G	C	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;DP=59;Dels=0.00;FS=3.662;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-0.387;QD=15.56;ReadPosRankSum=-0.751;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:31,28:59:99:946,0,1029
+chr1	122655	.	T	G	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.488;DP=64;Dels=0.00;FS=1.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=0;MQRankSum=-0.915;QD=9.84;ReadPosRankSum=1.687;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:43,21:64:99:658,0,1417
+chr1	122658	.	C	G	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=63;Dels=0.00;FS=2.302;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=0.303;QD=9.33;ReadPosRankSum=1.676;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:43,20:63:99:616,0,1391
+chr1	122661	.	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DP=59;Dels=0.00;FS=3.946;HaplotypeScore=7.7321;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=0;MQRankSum=-0.511;QD=9.88;ReadPosRankSum=1.371;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:40,19:59:99:611,0,1272
+chr1	122745	.	C	A	1546.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=14.4976;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=35.56;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1575,120,0
+chr1	122757	.	A	C,G	1142.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.27;MQ0=0;QD=30.87;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/2:0,15,22:37:99:1336,829,786,508,0,441
+chr1	122760	.	T	G	1421.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=30.21;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1450,108,0
+chr1	122767	.	A	C	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-5.113;QD=8.09;ReadPosRankSum=2.844;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:28,13:41:99:360,0,994
+chr1	122789	.	C	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=56.13;MQ0=0;MQRankSum=-4.915;QD=8.73;ReadPosRankSum=1.209;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:26,12:38:99:360,0,925
+chr1	122826	.	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.987;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.84;MQ0=0;MQRankSum=-3.853;QD=3.02;ReadPosRankSum=1.957;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:31,6:37:99:140,0,1158
+chr1	122828	.	G	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DP=40;Dels=0.00;FS=1.550;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-2.688;QD=4.42;ReadPosRankSum=0.423;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:32,8:40:99:205,0,1171
+chr1	122865	.	C	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;DP=49;Dels=0.00;FS=14.272;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=0.373;QD=9.81;ReadPosRankSum=0.501;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:33,16:49:99:509,0,1184
+chr1	122905	.	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;DP=42;Dels=0.00;FS=5.692;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-0.989;QD=6.14;ReadPosRankSum=0.901;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:32,10:42:99:286,0,1168
+chr1	122938	.	C	T	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;DP=41;Dels=0.00;FS=5.664;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=1;MQRankSum=-4.235;QD=7.65;ReadPosRankSum=-3.497;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:28,13:41:99:342,0,1011
+chr1	122969	.	T	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;DP=52;Dels=0.00;FS=11.610;HaplotypeScore=2.8266;MLEAC=1;MLEAF=0.500;MQ=58.04;MQ0=0;MQRankSum=-5.166;QD=13.00;ReadPosRankSum=1.641;EFF=INTERGENIC(MODIFIER||||||||)	GT:AD:DP:GQ:PL	0/1:31,21:52:99:704,0,1092
+chr1	122976	.	C	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;DP=49;Dels=0.00;FS=12.245;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=-3.283;QD=13.83;ReadPosRankSum=2.879;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:28,21:49:99:706,0,952
+chr1	122990	.	C	T	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;DP=52;Dels=0.00;FS=15.894;HaplotypeScore=2.9996;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=-4.241;QD=12.23;ReadPosRankSum=3.207;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:32,20:52:99:664,0,1073
+chr1	123012	.	C	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;DP=52;Dels=0.00;FS=6.555;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=-3.786;QD=11.46;ReadPosRankSum=0.019;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:31,21:52:99:624,0,1045
+chr1	123034	.	T	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;DP=46;Dels=0.00;FS=4.428;HaplotypeScore=3.8314;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-1.707;QD=10.23;ReadPosRankSum=-1.707;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:29,17:46:99:499,0,1020
+chr1	123098	.	A	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;DP=38;Dels=0.00;FS=7.718;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=1;MQRankSum=1.769;QD=9.86;ReadPosRankSum=-1.613;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:24,14:38:99:403,0,787
+chr1	123121	.	C	T	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;DP=35;Dels=0.00;FS=3.247;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=1;MQRankSum=-1.207;QD=9.59;ReadPosRankSum=-1.907;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:21,14:35:99:364,0,645
+chr1	123176	.	A	T	1326.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=34.79;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1355,102,0
+chr1	123262	.	G	A	661.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=10.6984;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.09;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:690,51,0
+chr1	123294	.	A	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;DP=22;Dels=0.00;FS=6.897;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-2.901;QD=10.03;ReadPosRankSum=-0.375;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:14,8:22:99:249,0,484
+chr1	123320	.	T	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;DP=23;Dels=0.00;FS=7.060;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.409;QD=11.56;ReadPosRankSum=2.425;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:14,9:23:99:294,0,487
+chr1	123328	.	G	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DP=25;Dels=0.00;FS=6.402;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.878;QD=9.19;ReadPosRankSum=2.123;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:16,9:25:99:258,0,573
+chr1	123528	.	G	T	563.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=3;QD=31.32;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:3,15:18:45:592,45,0
+chr1	123588	.	T	C	848.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=3;QD=33.95;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:3,22:25:66:877,66,0
+chr1	123694	.	A	G	697.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=34.89;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:54:726,54,0
+chr1	123730	.	T	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DP=23;Dels=0.00;FS=5.969;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=-0.502;QD=1.34;ReadPosRankSum=-0.411;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:20,3:23:59:59,0,664
+chr1	123755	.	C	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=28;Dels=0.00;FS=5.305;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=0.624;QD=2.21;ReadPosRankSum=0.492;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:24,4:28:90:90,0,768
+chr1	123843	.	T	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;DP=24;Dels=0.00;FS=16.510;HaplotypeScore=1.8663;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=0.889;QD=7.57;ReadPosRankSum=-0.191;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:17,7:24:99:210,0,577
+chr1	123903	.	T	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;DP=31;Dels=0.00;FS=1.446;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=0.500;QD=11.77;ReadPosRankSum=1.221;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:18,13:31:99:393,0,627
+chr1	123904	.	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;DP=31;Dels=0.00;FS=1.446;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=0.941;QD=11.67;ReadPosRankSum=1.141;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:18,13:31:99:390,0,619
+chr1	123916	.	T	G	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=-1.276;QD=10.49;ReadPosRankSum=0.390;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:21,13:34:99:385,0,693
+chr1	123923	.	C	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.9993;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=0.329;QD=9.32;ReadPosRankSum=-0.141;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:23,14:37:99:373,0,791
+chr1	123947	.	C	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;DP=42;Dels=0.00;FS=1.259;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-1.321;QD=9.66;ReadPosRankSum=-0.867;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:28,14:42:99:434,0,970
+chr1	123966	.	G	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=11.9954;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=-0.893;QD=8.91;ReadPosRankSum=-0.275;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:25,11:36:99:349,0,885
+chr1	123975	.	T	A	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;DP=41;Dels=0.00;FS=1.345;HaplotypeScore=13.9928;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-0.124;QD=9.60;ReadPosRankSum=1.113;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:27,14:41:99:422,0,967
+chr1	124035	.	T	C	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;DP=34;Dels=0.00;FS=6.057;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=-0.378;QD=10.76;ReadPosRankSum=1.423;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:22,12:34:99:394,0,689
+chr1	124057	.	G	A	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;DP=38;Dels=0.00;FS=1.301;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=56.99;MQ0=0;MQRankSum=-0.990;QD=12.70;ReadPosRankSum=0.754;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:22,16:38:99:511,0,655
+chr1	124075	.	T	G	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=14.4976;MLEAC=1;MLEAF=0.500;MQ=55.88;MQ0=0;MQRankSum=-0.800;QD=11.92;ReadPosRankSum=1.082;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:17,11:28:99:362,0,542
+chr1	124090	.	T	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.22;MQ0=0;MQRankSum=-3.362;QD=13.27;ReadPosRankSum=0.703;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:18,14:32:99:453,0,623
+chr1	124097	.	G	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.10;MQ0=0;MQRankSum=-3.549;QD=10.19;ReadPosRankSum=0.669;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:19,12:31:99:344,0,678
+chr1	124108	.	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.822;DP=29;Dels=0.00;FS=3.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.38;MQ0=0;MQRankSum=-4.061;QD=9.68;ReadPosRankSum=1.124;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:19,10:29:99:309,0,669
+chr1	124113	.	C	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=6.057;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.25;MQ0=0;MQRankSum=-3.923;QD=8.52;ReadPosRankSum=1.159;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:22,10:32:99:301,0,784
+chr1	124123	.	A	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DP=31;Dels=0.00;FS=6.205;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=-3.867;QD=8.61;ReadPosRankSum=-0.063;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:21,10:31:99:295,0,742
+chr1	124134	.	C	T	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DP=29;Dels=0.00;FS=10.056;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=3.001;QD=23.82;ReadPosRankSum=1.147;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:8,21:29:99:719,0,221
+chr1	124151	.	C	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.49;MQ0=0;MQRankSum=1.104;QD=10.27;ReadPosRankSum=1.047;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:16,9:25:99:285,0,486
+chr1	124152	.	A	G	916.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=27.62;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:72:945,72,0
+chr1	124168	.	C	T	879.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.592;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.4667;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=2;MQRankSum=2.281;QD=28.38;ReadPosRankSum=1.764;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:2,29:31:72:908,72,0
+chr1	124203	.	T	C	759.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=2;QD=25.33;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:66:788,66,0
+chr1	124205	.	A	G	777.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.764;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=2;MQRankSum=2.281;QD=25.09;ReadPosRankSum=-2.195;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:2,29:31:69:806,69,0
+chr1	124243	.	G	C	675.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=2;QD=28.16;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:57:704,57,0
+chr1	124267	.	G	A	818.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;QD=34.12;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:66:847,66,0
+chr1	124277	.	A	C	856.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=34.27;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:69:885,69,0
+chr1	124284	.	C	T	947.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=33.85;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:78:976,78,0
+chr1	124321	.	C	T	993.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.624;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;MQRankSum=2.203;QD=33.13;ReadPosRankSum=1.788;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:2,28:30:78:1022,78,0
+chr1	124337	.	C	T	1115.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.315;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.29;MQ0=0;MQRankSum=2.239;QD=31.88;ReadPosRankSum=-0.107;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:2,33:35:90:1144,90,0
+chr1	124376	.	A	T	778.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.420;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=2;MQRankSum=1.850;QD=25.12;ReadPosRankSum=-0.645;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:2,29:31:66:807,66,0
+chr1	124388	.	C	T	51.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;MQRankSum=1.026;QD=12.94;ReadPosRankSum=-1.026;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:2,2:4:6:79,6,0
+chr1	124423	.	T	A	12.77	LowQual	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.97;MQ0=9;QD=1.28;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:9,1:10:3:39,3,0
+chr1	124467	.	G	T	1086.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=10;QD=27.17;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:7,33:40:84:1115,84,0
+chr1	124471	.	G	A	1113.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=8;QD=29.31;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:7,31:38:87:1142,87,0
+chr1	124494	.	G	A	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.11;MQ0=0;MQRankSum=2.064;QD=19.94;ReadPosRankSum=4.069;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:21,29:50:99:1025,0,663
+chr1	124512	.	A	C	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=0.557;QD=13.28;ReadPosRankSum=1.261;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:28,22:50:99:692,0,960
+chr1	124607	.	T	C	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.445;DP=50;Dels=0.00;FS=19.947;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.175;QD=16.82;ReadPosRankSum=1.106;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:25,25:50:99:869,0,855
+chr1	124731	.	C	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;DP=30;Dels=0.00;FS=18.572;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.727;QD=1.29;ReadPosRankSum=-2.688;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:26,4:30:67:67,0,818
+chr1	124820	.	A	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;DP=48;Dels=0.00;FS=1.134;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-1.600;QD=13.31;ReadPosRankSum=1.683;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:27,21:48:99:667,0,918
+chr1	124864	.	T	C	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=0.318;QD=14.06;ReadPosRankSum=-2.039;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:647,0,835
+chr1	124901	.	T	G	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.761;QD=16.06;ReadPosRankSum=0.874;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:22,23:45:99:751,0,736
+chr1	124917	.	A	T	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;DP=40;Dels=0.00;FS=2.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=0.251;QD=11.29;ReadPosRankSum=-1.145;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:25,15:40:99:480,0,891
+chr1	124920	.	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=1.054;QD=10.47;ReadPosRankSum=-1.153;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:23,13:36:99:405,0,807
+chr1	125002	.	T	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;DP=49;Dels=0.00;FS=1.202;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=2.069;QD=9.57;ReadPosRankSum=-1.460;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:32,17:49:99:497,0,1178
+chr1	125004	.	A	G	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=1.148;QD=23.22;ReadPosRankSum=1.083;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:16,32:49:99:1166,0,460
+chr1	125020	.	A	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;DP=46;Dels=0.00;FS=1.204;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=-1.547;QD=9.95;ReadPosRankSum=0.375;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:31,15:46:99:486,0,1126
+chr1	125046	.	A	G	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.788;QD=12.74;ReadPosRankSum=0.293;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:28,19:47:99:627,0,985
+chr1	125096	.	A	G	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;DP=42;Dels=0.00;FS=1.345;HaplotypeScore=2.7212;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=-1.887;QD=16.57;ReadPosRankSum=0.553;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:724,0,731
+chr1	125124	.	G	A	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=55.39;MQ0=0;MQRankSum=3.985;QD=26.36;ReadPosRankSum=0.286;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:7,26:33:99:898,0,147
+chr1	125126	.	T	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=55.39;MQ0=0;MQRankSum=-4.029;QD=3.63;ReadPosRankSum=0.066;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:26,7:33:99:148,0,866
+chr1	125128	.	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=55.39;MQ0=0;MQRankSum=-4.011;QD=2.63;ReadPosRankSum=2.370;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:25,7:33:99:115,0,854
+chr1	125133	.	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=55.08;MQ0=0;MQRankSum=-3.992;QD=3.99;ReadPosRankSum=2.622;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:24,7:31:99:152,0,843
+chr1	125134	.	A	G	1101.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.7885;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=25.82;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1130,90,0
+chr1	125142	.	C	T	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=52.83;MQ0=0;MQRankSum=4.377;QD=22.16;ReadPosRankSum=-1.254;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:10,20:30:99:693,0,230
+chr1	125149	.	G	A	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=28;Dels=0.00;FS=1.690;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=50.58;MQ0=0;MQRankSum=-4.514;QD=12.42;ReadPosRankSum=0.184;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:15,13:28:99:376,0,460
+chr1	125166	.	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=52.66;MQ0=0;MQRankSum=-4.339;QD=9.10;ReadPosRankSum=0.264;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:18,10:28:99:283,0,577
+chr1	125168	.	C	T	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DP=30;Dels=0.00;FS=1.805;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=51.84;MQ0=0;MQRankSum=4.551;QD=18.83;ReadPosRankSum=0.826;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:12,18:30:99:593,0,339
+chr1	125175	.	A	G	1245.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=23.30;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1274,102,0
+chr1	125190	.	C	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;DP=37;Dels=0.00;FS=4.233;HaplotypeScore=1.9965;MLEAC=1;MLEAF=0.500;MQ=52.15;MQ0=0;MQRankSum=-5.120;QD=10.53;ReadPosRankSum=0.820;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:22,15:37:99:418,0,736
+chr1	125195	.	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.9963;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=25.57;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1547,123,0
+chr1	125207	.	G	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=54.37;MQ0=0;MQRankSum=-5.050;QD=8.99;ReadPosRankSum=2.160;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:26,13:39:99:379,0,880
+chr1	125210	.	C	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.37;MQ0=0;MQRankSum=-5.050;QD=8.89;ReadPosRankSum=2.309;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:26,13:39:99:375,0,828
+chr1	125216	.	G	C	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.26;MQ0=0;MQRankSum=-5.080;QD=8.81;ReadPosRankSum=1.918;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:25,14:39:99:372,0,862
+chr1	125248	.	T	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DP=49;Dels=0.00;FS=1.304;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=51.96;MQ0=1;MQRankSum=-3.990;QD=12.14;ReadPosRankSum=-0.686;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:623,0,932
+chr1	125250	.	C	T	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DP=47;Dels=0.00;FS=2.895;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=1;MQRankSum=4.261;QD=18.97;ReadPosRankSum=0.245;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:20,27:47:99:920,0,541
+chr1	125267	.	T	C	1345.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=1;QD=32.82;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1374,111,0
+chr1	125269	.	T	C	1426.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=1;QD=34.80;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1455,114,0
+chr1	125274	.	A	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=49.93;MQ0=1;MQRankSum=3.553;QD=15.80;ReadPosRankSum=0.624;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:755,0,576
+chr1	125306	.	A	T	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DP=36;Dels=0.00;FS=1.377;HaplotypeScore=9.9429;MLEAC=1;MLEAF=0.500;MQ=47.61;MQ0=1;MQRankSum=-2.732;QD=11.44;ReadPosRankSum=1.772;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:19,17:36:99:440,0,654
+chr1	125310	.	C	T	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=9.9429;MLEAC=1;MLEAF=0.500;MQ=45.70;MQ0=1;MQRankSum=3.388;QD=16.64;ReadPosRankSum=-1.600;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:15,16:31:99:544,0,362
+chr1	125319	.	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.05;MQ0=1;MQRankSum=-3.282;QD=8.96;ReadPosRankSum=2.048;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:16,12:28:99:279,0,506
+chr1	125322	.	T	A	873.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=1;QD=32.36;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:72:902,72,0
+chr1	125330	.	T	A	876.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=1;QD=31.31;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:72:905,72,0
+chr1	125345	.	C	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;DP=23;Dels=0.00;FS=1.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.96;MQ0=0;MQRankSum=-3.132;QD=9.86;ReadPosRankSum=-0.031;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:13,10:23:99:255,0,427
+chr1	125408	.	C	T	195.84	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=32.64;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:18:224,18,0
+chr1	125409	.	C	G	191.84	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=31.97;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:18:220,18,0
+chr1	125410	.	C	G	194.84	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=32.47;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:18:223,18,0
+chr1	125416	.	G	T	13.95	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DP=14;Dels=0.00;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.55;MQ0=0;MQRankSum=1.734;QD=1.00;ReadPosRankSum=-0.822;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:12,2:14:42:42,0,418
+chr1	125441	.	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=24;Dels=0.00;FS=1.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.26;MQ0=1;MQRankSum=-3.324;QD=4.32;ReadPosRankSum=-3.905;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:15,9:24:99:132,0,545
+chr1	125444	.	C	T	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;DP=26;Dels=0.00;FS=1.697;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=51.30;MQ0=1;MQRankSum=3.652;QD=21.11;ReadPosRankSum=2.746;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:10,16:26:99:577,0,160
+chr1	125447	.	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;DP=24;Dels=0.00;FS=1.744;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=51.32;MQ0=1;MQRankSum=-3.937;QD=6.12;ReadPosRankSum=-2.551;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:14,10:24:99:175,0,501
+chr1	125453	.	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;DP=24;Dels=0.00;FS=3.963;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=51.60;MQ0=1;MQRankSum=-4.062;QD=7.91;ReadPosRankSum=-2.946;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:13,11:24:99:218,0,462
+chr1	125481	.	A	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;DP=33;Dels=0.00;FS=3.256;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.76;MQ0=1;MQRankSum=-4.758;QD=8.93;ReadPosRankSum=2.724;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:19,14:33:99:323,0,666
+chr1	125491	.	G	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DP=25;Dels=0.00;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=-4.105;QD=10.31;ReadPosRankSum=1.104;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:16,9:25:99:286,0,566
+chr1	125495	.	G	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;DP=25;Dels=0.00;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=-4.105;QD=10.43;ReadPosRankSum=1.161;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:16,9:25:99:289,0,560
+chr1	125497	.	A	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.689;DP=25;Dels=0.00;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=-4.105;QD=10.55;ReadPosRankSum=1.274;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:16,9:25:99:292,0,557
+chr1	125498	.	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;DP=25;Dels=0.00;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=-4.105;QD=10.19;ReadPosRankSum=1.387;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:16,9:25:99:283,0,571
+chr1	125503	.	A	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;DP=26;Dels=0.00;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.08;MQ0=0;MQRankSum=-4.042;QD=10.14;ReadPosRankSum=1.294;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:17,9:26:99:292,0,609
+chr1	125509	.	C	T	1210.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=28.40;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:93:1239,93,0
+chr1	125530	.	T	C	1192.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=25.52;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1221,93,0
+chr1	125548	.	C	A	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;DP=29;Dels=0.00;FS=9.640;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=2.073;QD=16.13;ReadPosRankSum=0.153;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:14,15:29:99:496,0,417
+chr1	125550	.	G	A	1067.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=31.72;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1096,87,0
+chr1	125582	.	C	T	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;DP=28;Dels=0.00;FS=3.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=1;MQRankSum=0.386;QD=21.10;ReadPosRankSum=-0.849;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:10,18:28:99:619,0,268
+chr1	125589	.	A	T	672.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=28.99;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:51:701,51,0
+chr1	125622	.	A	C	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;DP=42;Dels=0.00;FS=2.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=1;MQRankSum=-0.542;QD=19.26;ReadPosRankSum=-0.251;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:17,25:42:99:837,0,537
+chr1	125640	.	G	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;DP=41;Dels=0.00;FS=2.681;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=-1.405;QD=14.29;ReadPosRankSum=3.533;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:23,18:41:99:614,0,776
+chr1	125691	.	C	T	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DP=44;Dels=0.00;FS=4.165;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=0;MQRankSum=-2.085;QD=13.79;ReadPosRankSum=-0.308;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:25,19:44:99:635,0,863
+chr1	125721	.	T	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DP=36;Dels=0.00;FS=1.512;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.62;MQ0=0;MQRankSum=-1.754;QD=6.10;ReadPosRankSum=0.913;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:27,9:36:99:248,0,910
+chr1	125736	.	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=-1.023;QD=7.61;ReadPosRankSum=-0.457;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:22,9:31:99:264,0,762
+chr1	125740	.	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=58.25;MQ0=0;MQRankSum=-1.249;QD=8.20;ReadPosRankSum=-1.014;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:20,9:29:99:266,0,653
+chr1	125759	.	T	C	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=56.67;MQ0=0;MQRankSum=-3.079;QD=11.06;ReadPosRankSum=-0.652;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:18,11:29:99:349,0,542
+chr1	125772	.	C	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;DP=26;Dels=0.00;FS=8.852;HaplotypeScore=17.6766;MLEAC=1;MLEAF=0.500;MQ=55.71;MQ0=0;MQRankSum=-4.089;QD=13.88;ReadPosRankSum=-0.489;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:14,12:26:99:389,0,400
+chr1	125787	.	G	T	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=26;Dels=0.00;FS=12.825;HaplotypeScore=2.9982;MLEAC=1;MLEAF=0.500;MQ=55.75;MQ0=0;MQRankSum=1.463;QD=0.57;ReadPosRankSum=-2.801;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:23,3:26:43:43,0,723
+chr1	125794	.	C	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;DP=25;Dels=0.00;FS=1.697;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.49;MQ0=0;MQRankSum=-4.243;QD=12.43;ReadPosRankSum=1.670;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:14,11:25:99:339,0,466
+chr1	125810	.	G	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=0;MQRankSum=-4.808;QD=9.17;ReadPosRankSum=1.750;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:20,13:33:99:331,0,680
+chr1	125834	.	T	G	1147.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.503;QD=26.31;ReadPosRankSum=-1.286;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:1,30:31:70:1176,70,0
+chr1	126025	.	G	A	1160.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=54.1245;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=26.85;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1189,90,0
+chr1	126059	.	T	C	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;DP=34;Dels=0.00;FS=7.712;HaplotypeScore=13.5642;MLEAC=1;MLEAF=0.500;MQ=46.49;MQ0=0;MQRankSum=4.960;QD=16.52;ReadPosRankSum=-2.721;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:590,0,540
+chr1	126061	.	T	A	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.514;DP=34;Dels=0.00;FS=7.712;HaplotypeScore=13.5642;MLEAC=1;MLEAF=0.500;MQ=46.49;MQ0=0;MQRankSum=4.960;QD=16.40;ReadPosRankSum=-3.341;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:586,0,522
+chr1	126072	.	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;DP=28;Dels=0.00;FS=6.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.25;MQ0=0;MQRankSum=-4.480;QD=11.53;ReadPosRankSum=1.648;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:16,12:28:99:351,0,542
+chr1	126082	.	A	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;DP=19;Dels=0.00;FS=7.701;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.40;MQ0=0;MQRankSum=-3.592;QD=9.46;ReadPosRankSum=1.479;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:12,7:19:99:208,0,430
+chr1	126524	.	G	A	622.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=27.99;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:651,51,0
+chr1	126529	.	T	A	646.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=27.13;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:675,51,0
+chr1	126531	.	C	T	649.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=30.09;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:678,51,0
+chr1	126536	.	G	A	653.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=25.84;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:682,51,0
+chr1	126547	.	G	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;DP=25;Dels=0.00;FS=13.262;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=47.44;MQ0=0;MQRankSum=0.082;QD=16.95;ReadPosRankSum=4.215;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:12,13:25:99:452,0,359
+chr1	126551	.	A	G	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;DP=25;Dels=0.00;FS=13.829;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=48.34;MQ0=0;MQRankSum=0.027;QD=15.23;ReadPosRankSum=4.215;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:13,12:25:99:409,0,391
+chr1	126556	.	T	C	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DP=24;Dels=0.00;FS=26.945;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.95;MQ0=0;MQRankSum=-0.381;QD=12.41;ReadPosRankSum=4.070;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:14,10:24:99:326,0,444
+chr1	126572	.	G	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DP=49;Dels=0.00;FS=4.366;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=49.66;MQ0=0;MQRankSum=-3.829;QD=8.40;ReadPosRankSum=0.618;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:34,15:49:99:440,0,1091
+chr1	126583	.	C	T	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=12.9923;MLEAC=1;MLEAF=0.500;MQ=50.69;MQ0=0;MQRankSum=-1.853;QD=19.55;ReadPosRankSum=5.365;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:19,28:47:99:947,0,591
+chr1	126584	.	G	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;DP=47;Dels=0.00;FS=2.763;HaplotypeScore=12.9923;MLEAC=1;MLEAF=0.500;MQ=50.69;MQ0=0;MQRankSum=-4.028;QD=8.53;ReadPosRankSum=1.677;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:32,15:47:99:429,0,1116
+chr1	126595	.	A	T	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.488;DP=52;Dels=0.00;FS=2.606;HaplotypeScore=22.9737;MLEAC=1;MLEAF=0.500;MQ=51.73;MQ0=0;MQRankSum=-4.709;QD=8.67;ReadPosRankSum=2.092;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:36,16:52:99:479,0,1271
+chr1	126599	.	G	T	1355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.510;DP=50;Dels=0.00;FS=1.289;HaplotypeScore=32.9690;MLEAC=1;MLEAF=0.500;MQ=52.25;MQ0=0;MQRankSum=-2.510;QD=27.12;ReadPosRankSum=-1.715;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:12,38:50:99:1384,0,313
+chr1	126603	.	A	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DP=50;Dels=0.00;FS=2.527;HaplotypeScore=32.7034;MLEAC=1;MLEAF=0.500;MQ=52.38;MQ0=0;MQRankSum=-4.690;QD=8.90;ReadPosRankSum=4.066;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:34,16:50:99:473,0,1206
+chr1	126605	.	C	T	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DP=51;Dels=0.00;FS=2.369;HaplotypeScore=32.7046;MLEAC=1;MLEAF=0.500;MQ=52.54;MQ0=0;MQRankSum=3.501;QD=15.29;ReadPosRankSum=-4.331;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:27,24:51:99:808,0,893
+chr1	126609	.	C	T	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DP=50;Dels=0.00;FS=2.429;HaplotypeScore=30.7052;MLEAC=1;MLEAF=0.500;MQ=52.80;MQ0=0;MQRankSum=-2.243;QD=17.32;ReadPosRankSum=3.641;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:24,26:50:99:894,0,800
+chr1	126615	.	T	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;DP=53;Dels=0.00;FS=8.297;HaplotypeScore=11.7855;MLEAC=1;MLEAF=0.500;MQ=54.30;MQ0=0;MQRankSum=-5.840;QD=8.94;ReadPosRankSum=4.602;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:36,17:53:99:502,0,1303
+chr1	126645	.	G	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DP=65;Dels=0.00;FS=13.603;HaplotypeScore=100.5169;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=-5.977;QD=5.77;ReadPosRankSum=-1.607;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:49,16:65:99:403,0,1747
+chr1	126670	.	C	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;DP=54;Dels=0.00;FS=1.105;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQ0=0;MQRankSum=-1.100;QD=11.75;ReadPosRankSum=-0.710;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:33,21:54:99:663,0,1180
+chr1	126698	.	T	C	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;DP=55;Dels=0.00;FS=8.472;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=2.036;QD=22.43;ReadPosRankSum=2.161;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:18,37:55:99:1262,0,539
+chr1	126702	.	T	C	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;DP=58;Dels=0.00;FS=16.756;HaplotypeScore=5.9982;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=-0.515;QD=9.98;ReadPosRankSum=-2.609;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:38,20:58:99:607,0,1364
+chr1	126709	.	C	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DP=54;Dels=0.00;FS=4.827;HaplotypeScore=4.9981;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=0.447;QD=5.42;ReadPosRankSum=-0.697;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:42,12:54:99:321,0,1519
+chr1	126712	.	A	T	2169.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=9.9949;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=27.57;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2198,166,0
+chr1	126725	.	G	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DP=57;Dels=0.00;FS=9.993;HaplotypeScore=9.9931;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=1.729;QD=12.00;ReadPosRankSum=-1.418;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:35,22:57:99:712,0,1228
+chr1	126730	.	T	C	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DP=53;Dels=0.00;FS=6.032;HaplotypeScore=9.9931;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=0.467;QD=9.18;ReadPosRankSum=-2.601;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:36,17:53:99:515,0,1208
+chr1	126761	.	C	A	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DP=49;Dels=0.00;FS=2.463;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=1.910;QD=16.77;ReadPosRankSum=-0.350;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:24,25:49:99:850,0,808
+chr1	126795	.	T	A	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;DP=58;Dels=0.00;FS=1.054;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=0;MQRankSum=-1.462;QD=20.89;ReadPosRankSum=1.685;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:23,35:58:99:1240,0,735
+chr1	126808	.	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DP=61;Dels=0.00;FS=3.491;HaplotypeScore=16.9835;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-3.792;QD=1.68;ReadPosRankSum=-0.502;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:53,8:61:99:131,0,1927
+chr1	126813	.	C	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;DP=62;Dels=0.00;FS=3.493;HaplotypeScore=46.9121;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-3.433;QD=1.59;ReadPosRankSum=0.304;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:54,8:62:99:127,0,1961
+chr1	126818	.	A	T	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;DP=60;Dels=0.00;FS=3.656;HaplotypeScore=46.9121;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=-1.381;QD=19.81;ReadPosRankSum=-0.083;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:24,36:60:99:1217,0,765
+chr1	126828	.	G	A	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;DP=64;Dels=0.00;FS=3.468;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=1;MQRankSum=0.035;QD=18.39;ReadPosRankSum=0.616;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:28,36:64:99:1205,0,913
+chr1	126853	.	C	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DP=65;Dels=0.00;FS=24.367;HaplotypeScore=18.9957;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=1;MQRankSum=-2.099;QD=2.83;ReadPosRankSum=-0.102;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:54,11:65:99:212,0,1982
+chr1	126860	.	A	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;DP=68;Dels=0.00;FS=20.308;HaplotypeScore=26.9946;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=1;MQRankSum=-1.259;QD=2.08;ReadPosRankSum=0.450;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:58,10:68:99:170,0,2073
+chr1	126861	.	T	A	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DP=69;Dels=0.00;FS=6.505;HaplotypeScore=26.9946;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=1;MQRankSum=0.043;QD=15.01;ReadPosRankSum=1.333;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:36,33:69:99:1064,0,1239
+chr1	126865	.	G	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DP=69;Dels=0.00;FS=24.072;HaplotypeScore=18.9966;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=1;MQRankSum=-0.684;QD=2.62;ReadPosRankSum=0.043;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:58,11:69:99:209,0,2116
+chr1	126883	.	A	G	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7886;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=1;MQRankSum=0.724;QD=7.50;ReadPosRankSum=0.943;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:50,19:69:99:546,0,1802
+chr1	126896	.	G	T	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;DP=66;Dels=0.00;FS=6.828;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=1;MQRankSum=0.099;QD=17.81;ReadPosRankSum=-1.057;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:31,35:66:99:1204,0,1011
+chr1	126923	.	A	G	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;DP=68;Dels=0.00;FS=11.174;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=1;MQRankSum=1.555;QD=9.54;ReadPosRankSum=-1.395;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:46,22:68:99:677,0,1574
+chr1	126945	.	A	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;DP=63;Dels=0.00;FS=9.115;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=1;MQRankSum=0.380;QD=4.79;ReadPosRankSum=0.847;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:49,14:63:99:330,0,1740
+chr1	126957	.	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;DP=59;Dels=0.00;FS=5.370;HaplotypeScore=18.9933;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=1;MQRankSum=0.773;QD=2.47;ReadPosRankSum=1.289;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:49,10:59:99:174,0,1767
+chr1	126959	.	A	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DP=55;Dels=0.00;FS=5.678;HaplotypeScore=18.9933;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=1;MQRankSum=-0.116;QD=3.18;ReadPosRankSum=0.812;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:45,10:55:99:203,0,1601
+chr1	126963	.	C	A	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;DP=54;Dels=0.00;FS=19.876;HaplotypeScore=17.9934;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=1;MQRankSum=-0.135;QD=13.01;ReadPosRankSum=0.695;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:32,22:54:99:731,0,1059
+chr1	126974	.	G	A	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DP=53;Dels=0.00;FS=4.336;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=1;MQRankSum=-0.448;QD=19.37;ReadPosRankSum=-0.858;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:21,32:53:99:1055,0,636
+chr1	126988	.	T	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.09;MQ0=1;MQRankSum=-0.179;QD=1.42;ReadPosRankSum=-0.636;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:40,7:47:95:95,0,1426
+chr1	127068	.	T	C	919.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=27.97;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:72:948,72,0
+chr1	127210	.	C	G	18.82	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=53.31;MQ0=0;MQRankSum=1.532;QD=1.71;ReadPosRankSum=-1.296;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:9,2:11:47:47,0,276
+chr1	127231	.	C	A	235.8	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=33.69;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:21:264,21,0
+chr1	127271	.	G	A	273.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;MQRankSum=2.262;QD=24.89;ReadPosRankSum=0.566;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:3,8:11:24:302,24,0
+chr1	127280	.	C	T	285.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=2;QD=23.82;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:24:314,24,0
+chr1	127338	.	C	T	75.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.92;MQ0=0;MQRankSum=0.731;QD=15.01;ReadPosRankSum=0.731;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:1,4:5:12:103,0,12
+chr1	127348	.	G	A	75.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=6;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.23;MQ0=0;MQRankSum=0.720;QD=12.51;ReadPosRankSum=1.380;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:2,4:6:12:103,0,12
+chr1	127382	.	C	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;DP=10;Dels=0.00;FS=11.181;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=35.14;MQ0=0;MQRankSum=2.383;QD=9.08;ReadPosRankSum=-0.741;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:6,4:10:43:119,0,43
+chr1	127438	.	G	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DP=27;Dels=0.00;FS=15.441;HaplotypeScore=6.0290;MLEAC=1;MLEAF=0.500;MQ=25.45;MQ0=5;MQRankSum=2.404;QD=11.51;ReadPosRankSum=1.469;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:13,14:27:56:339,0,56
+chr1	127457	.	C	T	504.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=5;MQRankSum=0.959;QD=18.03;ReadPosRankSum=0.228;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:5,23:28:51:533,51,0
+chr1	127490	.	G	A	323.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=1;MQRankSum=1.488;QD=21.58;ReadPosRankSum=1.240;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:1,14:15:36:352,36,0
+chr1	127515	.	T	C	221.78	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;QD=24.64;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:24:250,24,0
+chr1	127567	.	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;DP=35;Dels=0.00;FS=6.623;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=43.19;MQ0=2;MQRankSum=-4.564;QD=1.99;ReadPosRankSum=-3.380;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:23,12:35:98:98,0,737
+chr1	127579	.	G	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;DP=39;Dels=0.00;FS=3.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.40;MQ0=2;MQRankSum=-4.786;QD=2.30;ReadPosRankSum=-2.028;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:25,14:39:99:118,0,827
+chr1	127590	.	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DP=42;Dels=0.00;FS=4.107;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.59;MQ0=2;MQRankSum=-4.885;QD=1.95;ReadPosRankSum=1.048;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:29,13:42:99:110,0,969
+chr1	127595	.	T	G	1307.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=2;QD=29.72;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1336,111,0
+chr1	127637	.	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;DP=40;Dels=0.00;FS=12.746;HaplotypeScore=2.4098;MLEAC=1;MLEAF=0.500;MQ=51.13;MQ0=0;MQRankSum=-4.973;QD=2.04;ReadPosRankSum=-1.284;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:28,12:40:99:110,0,984
+chr1	127648	.	G	A	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;DP=35;Dels=0.00;FS=12.225;HaplotypeScore=1.8110;MLEAC=1;MLEAF=0.500;MQ=52.90;MQ0=0;MQRankSum=4.397;QD=25.96;ReadPosRankSum=3.076;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:9,26:35:99:937,0,111
+chr1	127656	.	T	C	1057.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.13;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1086,81,0
+chr1	127661	.	C	T	1052.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=32.43;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1081,81,0
+chr1	127677	.	T	C	998.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=30.02;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,25:27:75:1027,75,0
+chr1	127909	.	T	A	404.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.68;MQ0=5;QD=19.27;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:42:433,42,0
+chr1	127922	.	T	C	479.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=4;QD=22.85;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:45:508,45,0
+chr1	127948	.	A	G	614.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=4;QD=26.73;EFF=UPSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:51:643,51,0
+chr1	128047	.	A	G	823.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=1;QD=29.22;EFF=SYNONYMOUS_CODING(LOW|SILENT|caA/caG|Q26|Cc01g00090|mRNA||GSCOCT00012429001|Exon_chr1_127970_128260)	GT:AD:DP:GQ:PL	1/1:0,23:23:63:852,63,0
+chr1	128090	.	A	T	825.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=1;QD=25.81;EFF=STOP_GAINED(HIGH|NONSENSE|Aga/Tga|R41*|Cc01g00090|mRNA||GSCOCT00012429001|Exon_chr1_127970_128260)	GT:AD:DP:GQ:PL	1/1:0,32:32:69:854,69,0
+chr1	128144	.	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=31.05;EFF=SYNONYMOUS_CODING(LOW|SILENT|Ctg/Ttg|L59|Cc01g00090|mRNA||GSCOCT00012429001|Exon_chr1_127970_128260)	GT:AD:DP:GQ:PL	1/1:0,33:33:81:1053,81,0
+chr1	128315	.	C	T	802.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=29.94;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	1/1:0,22:22:63:831,63,0
+chr1	128373	.	T	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;DP=31;Dels=0.00;FS=10.328;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.35;MQ0=0;MQRankSum=-3.475;QD=1.64;ReadPosRankSum=-1.875;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|)	GT:AD:DP:GQ:PL	0/1:25,6:31:79:79,0,886
+chr1	128434	.	A	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DP=34;Dels=0.00;FS=10.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.34;MQ0=0;MQRankSum=-4.271;QD=13.76;ReadPosRankSum=1.757;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:496,0,567
+chr1	128435	.	C	A	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;DP=34;Dels=0.00;FS=13.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.34;MQ0=0;MQRankSum=4.202;QD=15.61;ReadPosRankSum=-1.929;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:559,0,495
+chr1	128484	.	G	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=0;MQRankSum=-4.478;QD=17.06;ReadPosRankSum=0.460;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:13,17:30:99:540,0,432
+chr1	128493	.	A	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.90;MQ0=0;MQRankSum=-4.008;QD=15.96;ReadPosRankSum=0.507;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:13,15:28:99:475,0,439
+chr1	128534	.	G	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;DP=28;Dels=0.00;FS=5.632;HaplotypeScore=18.3580;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=0.821;QD=1.99;ReadPosRankSum=-2.199;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:24,4:28:84:84,0,841
+chr1	128588	.	C	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DP=37;Dels=0.00;FS=28.800;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-0.381;QD=17.89;ReadPosRankSum=1.356;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:17,20:37:99:690,0,561
+chr1	128665	.	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=3.2953;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=33.08;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:93:1204,93,0
+chr1	128691	.	G	A	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=56.19;MQ0=4;MQRankSum=-0.764;QD=6.66;ReadPosRankSum=-0.657;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:28,11:39:99:288,0,846
+chr1	128700	.	T	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=5;MQRankSum=-1.458;QD=4.21;ReadPosRankSum=-0.152;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:29,8:37:99:184,0,862
+chr1	128703	.	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.40;MQ0=5;MQRankSum=-0.441;QD=4.19;ReadPosRankSum=-0.049;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:28,7:35:99:175,0,799
+chr1	128705	.	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.53;MQ0=5;MQRankSum=-0.969;QD=4.27;ReadPosRankSum=0.118;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:29,7:36:99:182,0,890
+chr1	128706	.	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.40;MQ0=5;MQRankSum=-1.471;QD=4.59;ReadPosRankSum=0.049;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:28,7:35:99:189,0,851
+chr1	128741	.	T	C	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.822;DP=49;Dels=0.00;FS=18.338;HaplotypeScore=2.9979;MLEAC=1;MLEAF=0.500;MQ=54.84;MQ0=3;MQRankSum=-1.889;QD=10.67;ReadPosRankSum=2.025;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:30,19:49:99:551,0,903
+chr1	128751	.	A	G	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.379;DP=53;Dels=0.00;FS=22.251;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=55.24;MQ0=3;MQRankSum=-1.700;QD=9.75;ReadPosRankSum=3.031;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:34,19:53:99:545,0,1055
+chr1	128795	.	G	A	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;DP=55;Dels=0.00;FS=5.871;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=0;MQRankSum=-3.881;QD=14.92;ReadPosRankSum=-1.456;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:27,28:55:99:849,0,927
+chr1	128807	.	T	C	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;DP=57;Dels=0.00;FS=5.835;HaplotypeScore=10.9974;MLEAC=1;MLEAF=0.500;MQ=56.07;MQ0=0;MQRankSum=-3.485;QD=12.96;ReadPosRankSum=3.212;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:31,26:57:99:767,0,1052
+chr1	128808	.	C	T	2130.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=11.9972;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=30.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2159,165,0
+chr1	128816	.	A	G	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;DP=56;Dels=0.00;FS=11.033;HaplotypeScore=23.9742;MLEAC=1;MLEAF=0.500;MQ=56.13;MQ0=0;MQRankSum=0.409;QD=5.35;ReadPosRankSum=-2.905;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:44,12:56:99:328,0,1466
+chr1	128821	.	G	T	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;DP=54;Dels=0.00;FS=1.128;HaplotypeScore=13.9934;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=-1.961;QD=19.50;ReadPosRankSum=3.054;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:20,34:54:99:1081,0,641
+chr1	128823	.	C	T	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;DP=51;Dels=0.00;FS=1.146;HaplotypeScore=22.8239;MLEAC=1;MLEAF=0.500;MQ=57.23;MQ0=0;MQRankSum=-0.718;QD=18.68;ReadPosRankSum=2.727;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:21,30:51:99:981,0,699
+chr1	128833	.	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;DP=53;Dels=0.00;FS=6.025;HaplotypeScore=10.8296;MLEAC=1;MLEAF=0.500;MQ=57.48;MQ0=0;MQRankSum=-0.580;QD=3.51;ReadPosRankSum=0.830;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:43,10:53:99:214,0,1479
+chr1	128853	.	G	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;DP=49;Dels=0.00;FS=11.665;HaplotypeScore=1.6634;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=0;MQRankSum=-1.294;QD=3.67;ReadPosRankSum=1.902;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:39,9:49:99:208,0,1382
+chr1	128899	.	G	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;DP=38;Dels=0.00;FS=4.943;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=-3.084;QD=11.84;ReadPosRankSum=-1.213;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:20,18:38:99:478,0,618
+chr1	128911	.	T	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DP=51;Dels=0.00;FS=1.395;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=-2.607;QD=3.39;ReadPosRankSum=-3.817;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:42,9:51:99:201,0,1364
+chr1	128916	.	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.91;MQ0=0;MQRankSum=-1.816;QD=3.41;ReadPosRankSum=-2.706;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:42,9:51:99:202,0,1455
+chr1	128946	.	A	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;DP=60;Dels=0.00;FS=2.267;HaplotypeScore=13.9962;MLEAC=1;MLEAF=0.500;MQ=56.81;MQ0=0;MQRankSum=-1.741;QD=9.48;ReadPosRankSum=1.787;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:38,22:60:99:597,0,1331
+chr1	128948	.	A	C	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;DP=62;Dels=0.00;FS=1.018;HaplotypeScore=31.9736;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=0;MQRankSum=-2.302;QD=9.50;ReadPosRankSum=1.640;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:40,22:62:99:617,0,1424
+chr1	128956	.	C	G	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=47.9525;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=0.097;QD=7.15;ReadPosRankSum=1.620;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:48,17:65:99:493,0,1642
+chr1	128957	.	T	G	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=63;Dels=0.00;FS=2.198;HaplotypeScore=33.9668;MLEAC=1;MLEAF=0.500;MQ=58.06;MQ0=0;MQRankSum=-1.149;QD=20.84;ReadPosRankSum=1.949;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:23,40:63:99:1341,0,755
+chr1	128961	.	G	A	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;DP=63;Dels=0.00;FS=2.198;HaplotypeScore=17.9912;MLEAC=1;MLEAF=0.500;MQ=58.06;MQ0=0;MQRankSum=-1.577;QD=19.96;ReadPosRankSum=1.877;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:23,40:63:99:1286,0,756
+chr1	128975	.	G	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=33.8278;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=-0.350;QD=10.39;ReadPosRankSum=-0.311;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:45,23:68:99:735,0,1596
+chr1	128988	.	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DP=73;Dels=0.00;FS=12.861;HaplotypeScore=23.3284;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=-0.345;QD=5.52;ReadPosRankSum=1.976;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:55,17:73:99:431,0,2010
+chr1	129160	.	A	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=53.02;MQ0=0;MQRankSum=-5.688;QD=4.52;ReadPosRankSum=-1.880;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:48,15:63:99:313,0,1702
+chr1	129165	.	G	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=52.41;MQ0=0;MQRankSum=-5.619;QD=4.83;ReadPosRankSum=-1.164;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:46,15:61:99:323,0,1605
+chr1	129168	.	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=52.55;MQ0=0;MQRankSum=-5.671;QD=4.71;ReadPosRankSum=-0.542;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:47,15:62:99:320,0,1616
+chr1	129170	.	G	T	2364.77	.	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=33.61;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2393,187,0
+chr1	129174	.	T	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.87;MQ0=0;MQRankSum=-5.798;QD=4.36;ReadPosRankSum=1.384;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:50,16:66:99:316,0,1690
+chr1	129186	.	A	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.94;MQ0=1;MQRankSum=-6.469;QD=6.53;ReadPosRankSum=1.121;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:46,23:69:99:479,0,1553
+chr1	129201	.	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;DP=58;Dels=0.00;FS=2.756;HaplotypeScore=12.9038;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=1;MQRankSum=1.307;QD=5.62;ReadPosRankSum=1.103;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:44,14:58:99:354,0,1347
+chr1	129215	.	C	A	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;DP=44;Dels=0.00;FS=1.218;HaplotypeScore=9.9234;MLEAC=1;MLEAF=0.500;MQ=51.67;MQ0=1;MQRankSum=-4.732;QD=10.43;ReadPosRankSum=1.749;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:487,0,829
+chr1	129227	.	T	C	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=52.06;MQ0=1;MQRankSum=-4.330;QD=5.34;ReadPosRankSum=1.719;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:22,10:32:99:199,0,742
+chr1	129279	.	T	G	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DP=43;Dels=0.00;FS=7.514;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=55.76;MQ0=2;MQRankSum=-0.257;QD=20.27;ReadPosRankSum=-4.290;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:15,28:43:99:900,0,484
+chr1	129287	.	G	A	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;DP=45;Dels=0.00;FS=10.631;HaplotypeScore=2.7884;MLEAC=1;MLEAF=0.500;MQ=55.96;MQ0=2;MQRankSum=-1.076;QD=22.04;ReadPosRankSum=-3.486;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:14,31:45:99:1020,0,440
+chr1	129320	.	T	A	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;DP=51;Dels=0.00;FS=20.436;HaplotypeScore=2.9997;MLEAC=1;MLEAF=0.500;MQ=57.21;MQ0=3;MQRankSum=0.864;QD=22.03;ReadPosRankSum=3.445;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:17,34:51:99:1152,0,502
+chr1	129323	.	A	G	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;DP=48;Dels=0.00;FS=17.838;HaplotypeScore=3.9996;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=3;MQRankSum=0.605;QD=21.10;ReadPosRankSum=3.047;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:17,31:48:99:1041,0,518
+chr1	129341	.	C	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DP=57;Dels=0.00;FS=17.030;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=6;MQRankSum=-1.618;QD=3.28;ReadPosRankSum=-3.842;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:43,14:57:99:215,0,1547
+chr1	129364	.	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;DP=53;Dels=0.00;FS=30.019;HaplotypeScore=14.7852;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=5;MQRankSum=-1.619;QD=5.17;ReadPosRankSum=0.392;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:37,16:53:99:302,0,1331
+chr1	129366	.	C	T	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=12.7857;MLEAC=1;MLEAF=0.500;MQ=56.79;MQ0=5;MQRankSum=2.207;QD=16.03;ReadPosRankSum=-0.714;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:27,25:52:99:862,0,729
+chr1	129393	.	T	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;DP=49;Dels=0.00;FS=6.439;HaplotypeScore=51.4904;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=1;MQRankSum=-1.665;QD=10.87;ReadPosRankSum=1.560;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:29,20:49:99:561,0,1020
+chr1	129409	.	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;DP=52;Dels=0.00;FS=15.514;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=1;MQRankSum=-1.292;QD=7.01;ReadPosRankSum=2.326;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:36,16:52:99:393,0,1247
+chr1	129415	.	T	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;DP=49;Dels=0.00;FS=10.402;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=1;MQRankSum=-1.083;QD=4.57;ReadPosRankSum=1.655;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:36,13:49:99:252,0,1255
+chr1	129421	.	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;DP=47;Dels=0.00;FS=10.402;HaplotypeScore=14.7307;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-0.163;QD=4.36;ReadPosRankSum=1.118;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:36,11:47:99:233,0,1272
+chr1	129428	.	T	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;DP=47;Dels=0.00;FS=11.605;HaplotypeScore=14.5195;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=0.749;QD=1.72;ReadPosRankSum=0.016;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:41,6:47:99:109,0,1365
+chr1	129430	.	T	C	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;DP=47;Dels=0.00;FS=14.700;HaplotypeScore=13.5208;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-0.941;QD=28.42;ReadPosRankSum=-1.599;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:7,40:47:99:1364,0,151
+chr1	129470	.	A	G	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;DP=34;Dels=0.00;FS=6.431;HaplotypeScore=3.9295;MLEAC=1;MLEAF=0.500;MQ=56.67;MQ0=0;MQRankSum=3.106;QD=26.23;ReadPosRankSum=3.268;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:8,26:34:99:920,0,161
+chr1	129498	.	G	A	174.9	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=29.15;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:15:203,15,0
+chr1	129499	.	G	A	154.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=0.736;QD=25.82;ReadPosRankSum=0.736;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:1,5:6:14:183,0,14
+chr1	129592	.	A	G	656.9	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.867;DP=20;Dels=0.00;FS=9.777;HaplotypeScore=22.2964;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-1.387;QD=32.85;ReadPosRankSum=-1.387;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:1,19:20:15:685,15,0
+chr1	129600	.	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=53.77;MQ0=0;MQRankSum=1.557;QD=13.22;ReadPosRankSum=-0.519;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:15,11:26:99:372,0,498
+chr1	129610	.	G	T	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;DP=28;Dels=0.00;FS=28.641;HaplotypeScore=3.7875;MLEAC=1;MLEAF=0.500;MQ=54.24;MQ0=0;MQRankSum=-2.006;QD=30.10;ReadPosRankSum=0.446;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:3,25:28:36:871,0,36
+chr1	129625	.	G	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;DP=29;Dels=0.00;FS=12.308;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=56.07;MQ0=0;MQRankSum=-3.476;QD=13.10;ReadPosRankSum=1.572;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:17,12:29:99:408,0,556
+chr1	129672	.	C	T	16.86	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;DP=10;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.898;QD=1.69;ReadPosRankSum=-1.733;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:8,2:10:45:45,0,294
+chr1	129688	.	T	C	517.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.96;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,14:14:42:546,42,0
+chr1	129768	.	T	C	363.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=30.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:30:392,30,0
+chr1	129773	.	T	C	324.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=29.53;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:27:353,27,0
+chr1	129786	.	T	C	88.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=17.66;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:9:116,9,0
+chr1	129790	.	T	C	88.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=17.66;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:9:116,9,0
+chr1	129791	.	T	A	88.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=17.66;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:9:116,9,0
+chr1	129792	.	C	T	88.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=17.66;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:9:116,9,0
+chr1	129814	.	A	G	86.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=17.26;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:9:114,9,0
+chr1	129819	.	A	T	123.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.28;MQ0=1;QD=17.58;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:12:151,12,0
+chr1	129823	.	T	C	124.03	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.28;MQ0=1;QD=17.72;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:12:152,12,0
+chr1	129890	.	C	T	551.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187;DP=39;Dels=0.00;FS=4.523;HaplotypeScore=2.9153;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=13;MQRankSum=2.769;QD=14.15;ReadPosRankSum=-2.891;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:15,24:39:28:580,28,0
+chr1	129897	.	C	A	631.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036;DP=42;Dels=0.00;FS=4.559;HaplotypeScore=4.7472;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=14;MQRankSum=2.939;QD=15.04;ReadPosRankSum=-2.715;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:18,24:42:37:660,37,0
+chr1	129936	.	C	T	516.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.057;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=5;MQRankSum=1.999;QD=19.14;ReadPosRankSum=1.199;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:6,21:27:48:545,48,0
+chr1	129979	.	T	C	255.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=2;QD=21.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:2,10:12:27:284,27,0
+chr1	129983	.	C	T	208.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.67;MQ0=2;QD=18.98;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:2,9:11:24:237,24,0
+chr1	129984	.	T	C	217.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.67;MQ0=2;QD=19.80;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:2,9:11:24:246,24,0
+chr1	130090	.	A	G	197.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=4.6635;MLEAC=2;MLEAF=1.00;MQ=23.48;MQ0=0;MQRankSum=0.290;QD=16.48;ReadPosRankSum=-1.448;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:1,11:12:21:226,21,0
+chr1	130092	.	A	G	197.8	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.752;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=4.6635;MLEAC=2;MLEAF=1.00;MQ=23.48;MQ0=0;MQRankSum=0.752;QD=16.48;ReadPosRankSum=-0.752;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:2,10:12:21:226,21,0
+chr1	130105	.	T	G	496.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.063;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=1;MQRankSum=1.449;QD=23.66;ReadPosRankSum=-1.701;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:3,18:21:45:525,45,0
+chr1	130186	.	G	A	309.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=2;QD=25.81;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:2,10:12:30:338,30,0
+chr1	130188	.	G	A	307.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=2;QD=25.65;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:2,10:12:30:336,30,0
+chr1	130195	.	G	A	303.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;QD=30.38;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:30:332,30,0
+chr1	130203	.	T	C	188.8	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=26.97;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:21:217,21,0
+chr1	130297	.	C	T	396.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=32.64;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:33:425,33,0
+chr1	130299	.	C	T	391.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=32.27;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:33:420,33,0
+chr1	130317	.	G	A	482.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=28.92;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:39:511,39,0
+chr1	130321	.	G	A	485.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=31.64;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:39:514,39,0
+chr1	130322	.	G	A	476.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=31.23;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:39:505,39,0
+chr1	130326	.	A	G	488.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=27.14;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:39:517,39,0
+chr1	130345	.	T	C	618.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=32.54;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:48:647,48,0
+chr1	130362	.	C	T	595.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=29.55;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:48:624,48,0
+chr1	130369	.	A	G	530.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=34.90;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,14:14:42:559,42,0
+chr1	130374	.	T	C	645.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=31.21;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:674,51,0
+chr1	130382	.	T	C	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;DP=19;Dels=0.00;FS=9.745;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.14;MQ0=0;MQRankSum=-1.395;QD=20.51;ReadPosRankSum=1.395;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:7,12:19:99:418,0,230
+chr1	130392	.	G	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DP=16;Dels=0.00;FS=10.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=0;MQRankSum=-1.059;QD=17.24;ReadPosRankSum=1.059;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:7,9:16:99:304,0,242
+chr1	130395	.	G	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;DP=17;Dels=0.00;FS=10.843;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=0;MQRankSum=-1.107;QD=16.63;ReadPosRankSum=1.395;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:8,9:17:99:311,0,277
+chr1	130406	.	G	A	733.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=33.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:57:762,57,0
+chr1	130422	.	G	A	680.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=27.30;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:54:709,54,0
+chr1	130428	.	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DP=20;Dels=0.00;FS=13.778;HaplotypeScore=21.2632;MLEAC=1;MLEAF=0.500;MQ=55.68;MQ0=0;MQRankSum=0.501;QD=11.74;ReadPosRankSum=1.273;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:12,8:20:99:263,0,382
+chr1	130463	.	T	A	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;DP=33;Dels=0.00;FS=33.092;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=0;MQRankSum=1.767;QD=13.30;ReadPosRankSum=0.273;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:19,14:33:99:467,0,604
+chr1	130464	.	T	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;DP=34;Dels=0.00;FS=25.025;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=0;MQRankSum=-1.006;QD=16.52;ReadPosRankSum=-0.104;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:15,19:34:99:590,0,499
+chr1	130471	.	G	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;DP=36;Dels=0.00;FS=24.517;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=0.430;QD=13.85;ReadPosRankSum=0.143;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:20,16:36:99:527,0,659
+chr1	130515	.	C	T	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;DP=43;Dels=0.00;FS=6.930;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-0.717;QD=16.53;ReadPosRankSum=-0.255;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:21,22:43:99:739,0,723
+chr1	130542	.	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;DP=53;Dels=0.00;FS=1.790;HaplotypeScore=19.9950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.161;QD=1.77;ReadPosRankSum=-3.267;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:45,8:53:99:122,0,1658
+chr1	130586	.	C	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.060;QD=18.68;ReadPosRankSum=0.520;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:19,31:50:99:962,0,598
+chr1	130630	.	G	A	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=19.8889;MLEAC=1;MLEAF=0.500;MQ=58.60;MQ0=0;MQRankSum=0.154;QD=17.07;ReadPosRankSum=-0.666;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:17,25:42:99:745,0,563
+chr1	130682	.	A	C	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.9991;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=-0.407;QD=11.69;ReadPosRankSum=-0.199;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:34,21:55:99:671,0,1176
+chr1	130699	.	G	A	1434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9993;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=0.851;QD=23.14;ReadPosRankSum=-0.956;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:20,42:62:99:1463,0,623
+chr1	130768	.	C	T	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DP=53;Dels=0.00;FS=14.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQ0=0;MQRankSum=0.829;QD=23.54;ReadPosRankSum=-1.077;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:17,36:53:99:1276,0,522
+chr1	130839	.	A	G	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DP=36;Dels=0.00;FS=2.873;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.222;QD=17.69;ReadPosRankSum=1.299;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	0/1:17,19:36:99:665,0,568
+chr1	130852	.	C	G	1575.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.127;QD=22.42;ReadPosRankSum=0.887;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|)	GT:AD:DP:GQ:PL	1/1:1,40:41:99:1604,120,0
+chr1	130914	.	A	G	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.258;QD=22.52;ReadPosRankSum=0.711;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:16,32:48:99:1109,0,452
+chr1	130927	.	A	C	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DP=48;Dels=0.00;FS=6.248;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.498;QD=22.93;ReadPosRankSum=2.329;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:16,32:48:99:1129,0,467
+chr1	130951	.	A	G	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.242;DP=43;Dels=0.00;FS=7.186;HaplotypeScore=26.1290;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=-1.231;QD=23.90;ReadPosRankSum=1.205;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:14,29:43:99:1056,0,426
+chr1	130966	.	A	T	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DP=53;Dels=0.00;FS=6.248;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=0.819;QD=24.73;ReadPosRankSum=-1.333;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:15,38:53:99:1339,0,440
+chr1	130976	.	G	C	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.645;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=-0.337;QD=9.57;ReadPosRankSum=1.048;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:34,18:52:99:526,0,1151
+chr1	130992	.	C	T	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DP=57;Dels=0.00;FS=3.924;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=1.112;QD=21.72;ReadPosRankSum=-1.731;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:20,37:57:99:1266,0,611
+chr1	131017	.	C	G	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;DP=49;Dels=0.00;FS=19.446;HaplotypeScore=1.9986;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=0.850;QD=16.36;ReadPosRankSum=1.350;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:24,25:49:99:830,0,803
+chr1	131080	.	T	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=39;Dels=0.00;FS=1.261;HaplotypeScore=9.7317;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=0;MQRankSum=-0.662;QD=13.66;ReadPosRankSum=-0.634;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:21,18:39:99:561,0,711
+chr1	131092	.	A	T	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=29.6879;MLEAC=1;MLEAF=0.500;MQ=54.75;MQ0=0;MQRankSum=2.039;QD=20.12;ReadPosRankSum=0.810;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:15,25:40:99:833,0,436
+chr1	131093	.	A	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.421;DP=40;Dels=0.00;FS=5.618;HaplotypeScore=29.6879;MLEAC=1;MLEAF=0.500;MQ=54.75;MQ0=0;MQRankSum=-0.234;QD=5.22;ReadPosRankSum=1.390;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:30,10:40:99:237,0,1057
+chr1	131106	.	A	G	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DP=32;Dels=0.00;FS=8.080;HaplotypeScore=2.9994;MLEAC=1;MLEAF=0.500;MQ=52.01;MQ0=0;MQRankSum=-2.945;QD=13.59;ReadPosRankSum=-0.944;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:17,15:32:99:463,0,546
+chr1	131121	.	C	T	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467;DP=34;Dels=0.00;FS=5.188;HaplotypeScore=15.7761;MLEAC=1;MLEAF=0.500;MQ=52.99;MQ0=0;MQRankSum=-3.640;QD=15.90;ReadPosRankSum=-2.398;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:16,18:34:99:569,0,510
+chr1	131126	.	C	A	1433.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=15.7761;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=32.95;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1462,111,0
+chr1	131132	.	C	A	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;DP=44;Dels=0.00;FS=15.097;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=53.78;MQ0=0;MQRankSum=4.844;QD=17.24;ReadPosRankSum=-1.049;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:20,24:44:99:787,0,609
+chr1	131154	.	A	T	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=44;Dels=0.00;FS=23.397;HaplotypeScore=4.4675;MLEAC=1;MLEAF=0.500;MQ=52.56;MQ0=0;MQRankSum=-4.184;QD=14.54;ReadPosRankSum=2.039;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:668,0,759
+chr1	131158	.	C	T	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;DP=41;Dels=0.00;FS=21.509;HaplotypeScore=4.4675;MLEAC=1;MLEAF=0.500;MQ=52.27;MQ0=0;MQRankSum=-3.830;QD=13.41;ReadPosRankSum=2.131;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:22,19:41:99:578,0,692
+chr1	131163	.	T	C	1650.77	.	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.4677;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=32.12;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1679,129,0
+chr1	131170	.	T	G	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;DP=49;Dels=0.00;FS=38.825;HaplotypeScore=2.4678;MLEAC=1;MLEAF=0.500;MQ=51.91;MQ0=0;MQRankSum=-3.211;QD=11.44;ReadPosRankSum=1.611;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:30,19:49:99:589,0,938
+chr1	131184	.	G	A	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436;DP=49;Dels=0.00;FS=38.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.16;MQ0=2;MQRankSum=-3.020;QD=8.83;ReadPosRankSum=-0.595;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:33,16:49:99:461,0,1001
+chr1	131207	.	G	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.185;DP=42;Dels=0.00;FS=27.416;HaplotypeScore=4.4038;MLEAC=1;MLEAF=0.500;MQ=48.07;MQ0=2;MQRankSum=-3.576;QD=9.97;ReadPosRankSum=-4.554;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:27,15:42:99:447,0,821
+chr1	131225	.	C	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;DP=40;Dels=0.00;FS=16.577;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.44;MQ0=3;MQRankSum=-2.808;QD=6.19;ReadPosRankSum=-0.548;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:29,11:40:99:276,0,822
+chr1	131249	.	C	T	126.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=0.731;QD=25.21;ReadPosRankSum=-0.731;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	1/1:1,4:5:12:154,12,0
+chr1	131267	.	T	A	654.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=1;QD=34.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:51:683,51,0
+chr1	131275	.	T	C	693.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=1;QD=34.69;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:54:722,54,0
+chr1	131301	.	T	C	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;DP=31;Dels=0.00;FS=14.239;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=57.02;MQ0=3;MQRankSum=0.331;QD=6.41;ReadPosRankSum=-2.212;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:21,10:31:99:227,0,719
+chr1	131355	.	A	G	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;DP=32;Dels=0.00;FS=6.200;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=57.31;MQ0=1;MQRankSum=0.099;QD=15.24;ReadPosRankSum=0.298;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:14,18:32:99:516,0,481
+chr1	131363	.	A	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DP=30;Dels=0.00;FS=4.091;HaplotypeScore=8.8267;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=1;MQRankSum=-1.768;QD=15.03;ReadPosRankSum=1.200;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:14,16:30:99:479,0,438
+chr1	131370	.	T	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DP=35;Dels=0.00;FS=6.017;HaplotypeScore=8.8267;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=1;MQRankSum=2.012;QD=12.54;ReadPosRankSum=0.262;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:21,14:35:99:467,0,650
+chr1	131393	.	T	A	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;DP=35;Dels=0.00;FS=2.127;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=1;MQRankSum=-1.006;QD=16.68;ReadPosRankSum=0.486;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:15,20:35:99:612,0,506
+chr1	131394	.	T	G	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;DP=35;Dels=0.00;FS=2.127;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=1;MQRankSum=-2.497;QD=16.71;ReadPosRankSum=0.520;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:15,20:35:99:613,0,502
+chr1	131430	.	C	G	1471.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=1;QD=27.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1500,117,0
+chr1	131432	.	G	C	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;DP=42;Dels=0.00;FS=5.360;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=1;MQRankSum=-1.274;QD=17.66;ReadPosRankSum=1.668;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:18,24:42:99:770,0,563
+chr1	131475	.	G	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;DP=48;Dels=0.00;FS=2.505;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQ0=1;MQRankSum=0.096;QD=15.00;ReadPosRankSum=0.947;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:25,23:48:99:748,0,812
+chr1	131486	.	C	G	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;DP=50;Dels=0.00;FS=2.434;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.59;MQ0=0;MQRankSum=0.601;QD=16.58;ReadPosRankSum=-1.203;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|)	GT:AD:DP:GQ:PL	0/1:25,25:50:99:857,0,830
+chr1	131560	.	C	T	2155.77	.	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=30.7936;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=30.99;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2184,169,0
+chr1	131561	.	A	G	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=33.7934;MLEAC=1;MLEAF=0.500;MQ=52.54;MQ0=0;MQRankSum=4.289;QD=12.63;ReadPosRankSum=2.427;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:36,25:63:99:824,0,1054
+chr1	131579	.	T	A	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.134;DP=55;Dels=0.00;FS=1.050;HaplotypeScore=2.6642;MLEAC=1;MLEAF=0.500;MQ=51.43;MQ0=0;MQRankSum=3.452;QD=14.49;ReadPosRankSum=-1.717;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:29,25:55:99:825,0,902
+chr1	131583	.	G	A	2053.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.6642;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=27.47;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2082,162,0
+chr1	131601	.	G	A	779.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=26.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:63:808,63,0
+chr1	131602	.	T	C	819.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=28.08;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:63:848,63,0
+chr1	131633	.	G	T	907.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=28.45;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:936,69,0
+chr1	131703	.	T	C	2110.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=1;QD=34.51;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,54:55:99:2139,160,0
+chr1	131720	.	T	C	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;DP=55;Dels=0.00;FS=3.715;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=1;MQRankSum=-1.715;QD=13.65;ReadPosRankSum=4.883;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:30,25:55:99:779,0,1056
+chr1	131746	.	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=2;QD=31.08;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:1,42:43:99:1575,120,0
+chr1	131760	.	C	T	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;DP=39;Dels=0.00;FS=7.125;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.06;MQ0=2;MQRankSum=1.717;QD=15.71;ReadPosRankSum=0.927;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:20,19:39:99:641,0,573
+chr1	131770	.	G	A,C	1088.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.27;MQ0=3;QD=28.64;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/2:2,18,18:38:99:1278,681,630,597,0,543
+chr1	131775	.	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.080;DP=35;Dels=0.00;FS=5.188;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.37;MQ0=2;MQRankSum=-1.927;QD=13.85;ReadPosRankSum=-1.171;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:18,17:35:99:513,0,603
+chr1	131776	.	G	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;DP=33;Dels=0.00;FS=3.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.73;MQ0=2;MQRankSum=-2.203;QD=12.42;ReadPosRankSum=-0.536;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:18,15:33:99:438,0,599
+chr1	131796	.	A	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.71;MQ0=2;MQRankSum=-2.445;QD=10.05;ReadPosRankSum=0.780;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,14:36:99:390,0,704
+chr1	131801	.	A	G	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.91;MQ0=2;MQRankSum=2.114;QD=19.39;ReadPosRankSum=-1.067;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:14,21:35:99:707,0,371
+chr1	131805	.	G	C	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.83;MQ0=2;MQRankSum=2.434;QD=19.64;ReadPosRankSum=-1.129;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:14,24:39:99:794,0,392
+chr1	131806	.	A	G	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.83;MQ0=2;MQRankSum=-2.752;QD=9.10;ReadPosRankSum=1.129;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:25,14:39:99:383,0,799
+chr1	131818	.	T	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DP=39;Dels=0.00;FS=1.450;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.16;MQ0=2;MQRankSum=-2.677;QD=7.05;ReadPosRankSum=0.600;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:26,13:39:99:303,0,803
+chr1	131851	.	A	G	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;DP=41;Dels=0.00;FS=5.599;HaplotypeScore=20.1968;MLEAC=1;MLEAF=0.500;MQ=52.36;MQ0=1;MQRankSum=-3.302;QD=7.48;ReadPosRankSum=-1.506;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:28,12:41:99:335,0,851
+chr1	131940	.	C	T	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DP=33;Dels=0.00;FS=13.038;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.25;MQ0=1;MQRankSum=0.537;QD=15.87;ReadPosRankSum=-0.230;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:13,20:33:99:552,0,366
+chr1	131946	.	T	G	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;DP=33;Dels=0.00;FS=13.019;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.15;MQ0=1;MQRankSum=-0.754;QD=7.81;ReadPosRankSum=-0.079;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:22,11:33:99:286,0,622
+chr1	131950	.	G	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;DP=33;Dels=0.00;FS=9.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.67;MQ0=1;MQRankSum=-0.793;QD=6.69;ReadPosRankSum=-0.468;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,10:33:99:249,0,652
+chr1	131964	.	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;DP=27;Dels=0.00;FS=4.809;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.64;MQ0=1;MQRankSum=-0.976;QD=1.70;ReadPosRankSum=-2.017;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:22,5:27:74:74,0,639
+chr1	131985	.	A	T	612.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=1;QD=29.18;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:51:641,51,0
+chr1	132042	.	C	T	418.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=4;QD=19.94;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:36:447,36,0
+chr1	132048	.	T	A	299.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.822;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=4;MQRankSum=1.734;QD=16.65;ReadPosRankSum=1.187;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:6,12:18:27:328,27,0
+chr1	132089	.	A	T	110.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.9529;MLEAC=2;MLEAF=1.00;MQ=18.63;MQ0=4;MQRankSum=0.747;QD=9.17;ReadPosRankSum=-0.747;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:1,11:12:12:138,12,0
+chr1	132209	.	C	T	107.03	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;QD=26.76;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,4:4:12:135,12,0
+chr1	132286	.	C	T	954.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=1;QD=29.84;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:78:983,78,0
+chr1	132307	.	T	C	759.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=29.22;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,25:26:63:788,63,0
+chr1	132327	.	A	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;DP=18;Dels=0.00;FS=4.832;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.500;MQ=44.38;MQ0=0;MQRankSum=-2.266;QD=7.82;ReadPosRankSum=1.555;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:10,8:18:99:169,0,314
+chr1	132328	.	A	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;DP=18;Dels=0.00;FS=4.832;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.500;MQ=44.38;MQ0=0;MQRankSum=-2.532;QD=7.82;ReadPosRankSum=1.644;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:10,8:18:99:169,0,315
+chr1	132332	.	A	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;DP=18;Dels=0.00;FS=4.832;HaplotypeScore=1.9663;MLEAC=1;MLEAF=0.500;MQ=44.38;MQ0=0;MQRankSum=-2.355;QD=7.65;ReadPosRankSum=1.555;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:10,8:18:99:166,0,314
+chr1	132348	.	G	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;DP=24;Dels=0.00;FS=4.738;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=46.07;MQ0=0;MQRankSum=1.431;QD=8.74;ReadPosRankSum=1.789;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:15,9:24:99:238,0,433
+chr1	132356	.	A	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;DP=24;Dels=0.00;FS=4.738;HaplotypeScore=14.3879;MLEAC=1;MLEAF=0.500;MQ=45.87;MQ0=0;MQRankSum=-2.087;QD=16.82;ReadPosRankSum=-0.775;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:9,15:24:99:432,0,228
+chr1	132369	.	A	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.53;MQ0=0;MQRankSum=-0.634;QD=1.95;ReadPosRankSum=1.528;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:18,5:23:73:73,0,558
+chr1	132372	.	A	T	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.51;MQ0=0;MQRankSum=-0.203;QD=0.52;ReadPosRankSum=2.068;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:19,4:23:40:40,0,597
+chr1	132376	.	T	A	12.99	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.51;MQ0=0;MQRankSum=-0.203;QD=0.56;ReadPosRankSum=1.419;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:19,4:23:41:41,0,600
+chr1	132383	.	A	C	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.49;MQ0=0;MQRankSum=-0.142;QD=0.75;ReadPosRankSum=-0.614;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:16,4:20:43:43,0,566
+chr1	132405	.	G	A	755.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=2;QD=32.86;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:60:784,60,0
+chr1	132443	.	C	T	984.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=2;QD=29.79;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1013,78,0
+chr1	132456	.	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;DP=28;Dels=0.00;FS=1.941;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=50.78;MQ0=2;MQRankSum=0.212;QD=22.35;ReadPosRankSum=0.393;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:9,18:28:99:654,0,184
+chr1	132468	.	C	G	1263.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=2;QD=32.17;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1292,99,0
+chr1	132478	.	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;DP=36;Dels=0.00;FS=3.155;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=53.69;MQ0=2;MQRankSum=0.673;QD=9.83;ReadPosRankSum=-0.071;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,15:36:99:382,0,743
+chr1	132621	.	A	G	898.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.9970;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.800;QD=34.57;ReadPosRankSum=1.600;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:1,25:26:42:927,42,0
+chr1	132697	.	G	T	1425.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=1;QD=28.86;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1454,108,0
+chr1	132730	.	G	C	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;DP=40;Dels=0.00;FS=1.399;HaplotypeScore=2.7317;MLEAC=1;MLEAF=0.500;MQ=52.84;MQ0=1;MQRankSum=-4.323;QD=6.12;ReadPosRankSum=-0.421;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:29,11:40:99:273,0,1019
+chr1	132737	.	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;DP=48;Dels=0.00;FS=1.273;HaplotypeScore=23.7282;MLEAC=1;MLEAF=0.500;MQ=51.85;MQ0=2;MQRankSum=-4.842;QD=7.04;ReadPosRankSum=0.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:33,14:48:99:366,0,1103
+chr1	132780	.	A	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;DP=55;Dels=0.00;FS=28.806;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=1;MQRankSum=2.043;QD=6.52;ReadPosRankSum=-0.819;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:40,15:55:99:387,0,1434
+chr1	132838	.	G	A	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;DP=60;Dels=0.00;FS=19.671;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=53.32;MQ0=0;MQRankSum=-0.669;QD=14.03;ReadPosRankSum=1.055;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:33,27:60:99:870,0,1128
+chr1	132869	.	G	T	2120.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=30.38;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2149,166,0
+chr1	132921	.	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=32.19;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1255,96,0
+chr1	132922	.	T	C	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DP=32;Dels=0.00;FS=15.134;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=47.64;MQ0=0;MQRankSum=-1.652;QD=17.87;ReadPosRankSum=1.500;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:14,18:32:99:600,0,462
+chr1	132923	.	G	T	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DP=32;Dels=0.00;FS=15.134;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=47.64;MQ0=0;MQRankSum=-1.842;QD=17.65;ReadPosRankSum=1.387;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:14,18:32:99:593,0,451
+chr1	132956	.	T	C	1509.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=64.3730;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=28.12;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1538,117,0
+chr1	133042	.	G	A	1488.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=34.62;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1517,120,0
+chr1	133059	.	C	T	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;DP=46;Dels=0.00;FS=11.451;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=0;MQRankSum=-2.139;QD=15.34;ReadPosRankSum=-0.265;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,25:46:99:734,0,651
+chr1	133068	.	T	C	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;DP=44;Dels=0.00;FS=11.681;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=48.47;MQ0=0;MQRankSum=-2.420;QD=14.97;ReadPosRankSum=-0.399;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,23:44:99:687,0,652
+chr1	133104	.	T	C	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;DP=47;Dels=0.00;FS=4.125;HaplotypeScore=2.9633;MLEAC=1;MLEAF=0.500;MQ=52.43;MQ0=0;MQRankSum=1.309;QD=14.85;ReadPosRankSum=-0.607;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,24:47:99:726,0,732
+chr1	133115	.	C	G	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;DP=46;Dels=0.00;FS=2.550;HaplotypeScore=2.9394;MLEAC=1;MLEAF=0.500;MQ=52.55;MQ0=0;MQRankSum=-1.164;QD=15.49;ReadPosRankSum=0.505;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:741,0,689
+chr1	133160	.	A	T	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=24.1627;MLEAC=1;MLEAF=0.500;MQ=51.45;MQ0=0;MQRankSum=2.042;QD=14.09;ReadPosRankSum=0.744;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:20,20:40:99:592,0,613
+chr1	133168	.	T	A	1301.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=72.4881;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=30.97;EFF=DOWNSTREAM(MODIFIER||||Cc01g00090|mRNA||GSCOCT00012429001|),UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1330,105,0
+chr1	133318	.	T	G	1696.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=27.68;EFF=UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1725,132,0
+chr1	133344	.	T	C	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=0.230;QD=15.59;ReadPosRankSum=0.150;EFF=UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:24,25:49:99:792,0,735
+chr1	133348	.	G	T	1903.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=33.82;EFF=UPSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1932,150,0
+chr1	133404	.	G	T	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;DP=49;Dels=0.00;FS=1.131;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.26;MQ0=0;MQRankSum=3.143;QD=19.20;ReadPosRankSum=0.559;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:20,29:49:99:969,0,589
+chr1	133419	.	G	C	1742.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=33.58;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1771,138,0
+chr1	133433	.	G	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;DP=39;Dels=0.00;FS=1.390;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=0;MQRankSum=-4.245;QD=8.51;ReadPosRankSum=0.593;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:27,12:39:99:360,0,943
+chr1	133435	.	A	T	1273.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=26.76;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1302,102,0
+chr1	133436	.	A	T	1250.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=27.76;EFF=START_GAINED(LOW||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1279,99,0
+chr1	133437	.	G	C	1319.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=27.96;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1348,102,0
+chr1	133448	.	C	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;DP=47;Dels=0.00;FS=1.146;HaplotypeScore=1.5317;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=-4.461;QD=10.08;ReadPosRankSum=-0.365;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:30,17:47:99:502,0,1052
+chr1	133453	.	C	T	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=16.0294;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=-4.142;QD=10.85;ReadPosRankSum=-0.245;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:30,18:48:99:549,0,976
+chr1	133491	.	T	A,G	1599.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.45;MQ0=0;QD=30.76;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	1/2:0,20,32:52:99:1838,1129,1068,710,0,616
+chr1	133511	.	T	G	1608.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=27.83;EFF=START_GAINED(LOW||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1637,126,0
+chr1	133553	.	A	G	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;DP=46;Dels=0.00;FS=8.994;HaplotypeScore=2.6278;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-4.347;QD=9.08;ReadPosRankSum=0.657;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:30,16:46:99:446,0,1041
+chr1	133580	.	G	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;DP=46;Dels=0.00;FS=8.283;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.24;MQ0=0;MQRankSum=-5.226;QD=14.26;ReadPosRankSum=-1.808;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:25,21:46:99:684,0,798
+chr1	133584	.	G	A	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;DP=45;Dels=0.00;FS=4.288;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=54.80;MQ0=0;MQRankSum=-5.037;QD=13.24;ReadPosRankSum=-1.450;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:25,20:45:99:624,0,830
+chr1	133629	.	G	A	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DP=53;Dels=0.00;FS=2.379;HaplotypeScore=3.9941;MLEAC=1;MLEAF=0.500;MQ=54.36;MQ0=0;MQRankSum=-5.817;QD=14.45;ReadPosRankSum=0.793;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:28,25:53:99:794,0,922
+chr1	133703	.	G	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;DP=47;Dels=0.00;FS=1.150;HaplotypeScore=11.4011;MLEAC=1;MLEAF=0.500;MQ=53.94;MQ0=0;MQRankSum=-5.657;QD=8.59;ReadPosRankSum=0.492;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:29,18:47:99:432,0,1026
+chr1	133708	.	C	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=11.4011;MLEAC=1;MLEAF=0.500;MQ=54.07;MQ0=0;MQRankSum=-4.162;QD=6.83;ReadPosRankSum=-1.463;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:34,14:48:99:356,0,1139
+chr1	133768	.	C	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;DP=35;Dels=0.00;FS=3.120;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.03;MQ0=0;MQRankSum=-3.499;QD=9.74;ReadPosRankSum=0.802;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:22,13:35:99:369,0,766
+chr1	133772	.	T	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;DP=31;Dels=0.00;FS=1.503;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=0;MQRankSum=-2.798;QD=11.86;ReadPosRankSum=-0.258;EFF=UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UTR_5_PRIME(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269)	GT:AD:DP:GQ:PL	0/1:17,14:31:99:396,0,591
+chr1	133877	.	G	C	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.348;DP=64;Dels=0.00;FS=2.113;HaplotypeScore=9.9811;MLEAC=1;MLEAF=0.500;MQ=48.82;MQ0=0;MQRankSum=-3.336;QD=12.97;ReadPosRankSum=1.698;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtG/gtC|V19|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:36,28:64:99:858,0,1194
+chr1	133880	.	T	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.9811;MLEAC=1;MLEAF=0.500;MQ=48.53;MQ0=0;MQRankSum=-1.770;QD=2.61;ReadPosRankSum=2.191;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcT/tcG|S20|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:52,10:62:99:190,0,1843
+chr1	133924	.	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=14.4642;MLEAC=1;MLEAF=0.500;MQ=50.02;MQ0=1;MQRankSum=-2.145;QD=5.48;ReadPosRankSum=0.419;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCt/cTt|P35L|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:38,12:50:99:302,0,1267
+chr1	133955	.	C	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;DP=31;Dels=0.00;FS=1.768;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=49.62;MQ0=0;MQRankSum=-2.415;QD=5.06;ReadPosRankSum=-1.377;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaC/gaG|D45E|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,8:31:99:185,0,789
+chr1	133985	.	C	T	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;DP=21;Dels=0.00;FS=15.849;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=1;MQRankSum=-2.976;QD=1.42;ReadPosRankSum=-2.032;EFF=SYNONYMOUS_CODING(LOW|SILENT|tgC/tgT|C55|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:16,5:21:58:58,0,571
+chr1	134007	.	G	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;DP=26;Dels=0.00;FS=3.862;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.17;MQ0=1;MQRankSum=-3.466;QD=6.64;ReadPosRankSum=-0.903;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Ttg|V63L|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:17,9:26:99:201,0,596
+chr1	134011	.	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DP=30;Dels=0.00;FS=3.630;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.39;MQ0=1;MQRankSum=-3.372;QD=7.46;ReadPosRankSum=-0.619;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gCc/gTc|A64V|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:19,11:30:99:252,0,660
+chr1	134033	.	A	G	12.99	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.69;MQ0=2;MQRankSum=-1.710;QD=0.33;ReadPosRankSum=-2.732;EFF=SYNONYMOUS_CODING(LOW|SILENT|ttA/ttG|L71|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:33,6:39:41:41,0,1056
+chr1	134148	.	C	T	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;DP=60;Dels=0.00;FS=15.632;HaplotypeScore=2.9570;MLEAC=1;MLEAF=0.500;MQ=39.89;MQ0=8;MQRankSum=1.349;QD=8.15;ReadPosRankSum=0.912;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgt/Tgt|R110C|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:41,19:60:99:517,0,973
+chr1	134280	.	A	C	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=91;Dels=0.00;FS=2.074;HaplotypeScore=10.4073;MLEAC=1;MLEAF=0.500;MQ=34.28;MQ0=7;MQRankSum=1.802;QD=10.80;ReadPosRankSum=-0.414;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aaa/Caa|K154Q|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:53,38:91:99:1011,0,1041
+chr1	134333	.	T	C	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DP=65;Dels=0.00;FS=5.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.88;MQ0=7;MQRankSum=0.576;QD=10.38;ReadPosRankSum=0.734;EFF=SYNONYMOUS_CODING(LOW|SILENT|taT/taC|Y171|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:41,24:65:99:703,0,1008
+chr1	134354	.	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.63;MQ0=7;MQRankSum=0.036;QD=9.56;ReadPosRankSum=-0.060;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcT/gcC|A178|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:30,21:51:99:516,0,788
+chr1	134514	.	T	C	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7876;MLEAC=1;MLEAF=0.500;MQ=37.13;MQ0=3;MQRankSum=-2.851;QD=7.28;ReadPosRankSum=-0.527;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgc/Cgc|C232R|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:27,23:50:99:392,0,878
+chr1	134570	.	T	C	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DP=44;Dels=0.00;FS=1.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.49;MQ0=0;MQRankSum=3.436;QD=19.43;ReadPosRankSum=-1.090;EFF=SYNONYMOUS_CODING(LOW|SILENT|ttT/ttC|F250|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:19,25:44:99:883,0,419
+chr1	134580	.	C	T	1494.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;QD=33.97;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cca/Tca|P254S|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1523,117,0
+chr1	134603	.	G	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.9762;MLEAC=1;MLEAF=0.500;MQ=42.98;MQ0=0;MQRankSum=-4.437;QD=12.42;ReadPosRankSum=-1.075;EFF=SYNONYMOUS_CODING(LOW|SILENT|acG/acT|T261|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,24:47:99:612,0,769
+chr1	134696	.	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DP=25;Dels=0.00;FS=7.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.51;MQ0=1;MQRankSum=1.217;QD=13.63;ReadPosRankSum=-3.187;EFF=SYNONYMOUS_CODING(LOW|SILENT|agG/agA|R292|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:11,14:25:99:369,0,240
+chr1	134729	.	G	T	259.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.888;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=6;MQRankSum=1.678;QD=13.67;ReadPosRankSum=1.283;EFF=SYNONYMOUS_CODING(LOW|SILENT|ggG/ggT|G303|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:2,17:19:30:288,30,0
+chr1	134730	.	T	G	147.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DP=17;Dels=0.00;FS=9.031;HaplotypeScore=3.8313;MLEAC=1;MLEAF=0.500;MQ=18.34;MQ0=6;MQRankSum=0.715;QD=8.70;ReadPosRankSum=1.931;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ttc/Gtc|F304V|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:3,14:17:2:174,0,2
+chr1	134755	.	G	C	619.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=7;QD=20.66;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGt/aCt|S312T|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:54:648,54,0
+chr1	134780	.	T	C	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DP=42;Dels=0.00;FS=7.420;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=32.71;MQ0=7;MQRankSum=0.050;QD=10.07;ReadPosRankSum=1.871;EFF=SYNONYMOUS_CODING(LOW|SILENT|tgT/tgC|C320|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:26,16:42:99:451,0,502
+chr1	134807	.	C	T	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=53;Dels=0.00;FS=2.402;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.74;MQ0=5;MQRankSum=-1.432;QD=14.07;ReadPosRankSum=0.010;EFF=SYNONYMOUS_CODING(LOW|SILENT|atC/atT|I329|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:20,33:53:99:774,0,584
+chr1	134822	.	T	C	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;DP=52;Dels=0.00;FS=4.058;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=36.11;MQ0=1;MQRankSum=-2.231;QD=16.55;ReadPosRankSum=0.789;EFF=SYNONYMOUS_CODING(LOW|SILENT|atT/atC|I334|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:19,33:52:99:889,0,575
+chr1	134927	.	G	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.3557;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=9;MQRankSum=1.588;QD=7.44;ReadPosRankSum=-0.677;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaG/gaC|E369D|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:33,19:52:99:415,0,456
+chr1	135009	.	A	G	12.99	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DP=56;Dels=0.00;FS=9.949;HaplotypeScore=1.8154;MLEAC=1;MLEAF=0.500;MQ=45.81;MQ0=1;MQRankSum=-2.335;QD=0.23;ReadPosRankSum=-2.281;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Act/Gct|T397A|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:50,6:56:41:41,0,1637
+chr1	135029	.	G	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DP=68;Dels=0.00;FS=9.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=1;MQRankSum=-1.650;QD=2.79;ReadPosRankSum=-0.245;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|ttG/ttC|L403F|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:57,11:68:99:218,0,1758
+chr1	135042	.	A	G	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.577;DP=75;Dels=0.00;FS=8.931;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=39.96;MQ0=1;MQRankSum=3.045;QD=8.50;ReadPosRankSum=0.420;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aac/Gac|N408D|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:53,22:75:99:666,0,1347
+chr1	135055	.	A	G	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;DP=84;Dels=0.00;FS=10.873;HaplotypeScore=9.3239;MLEAC=1;MLEAF=0.500;MQ=36.61;MQ0=3;MQRankSum=0.553;QD=3.71;ReadPosRankSum=1.854;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAa/gGa|E412G|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:69,15:84:99:340,0,1652
+chr1	135124	.	A	G	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=84;Dels=0.00;FS=3.513;HaplotypeScore=1.9965;MLEAC=1;MLEAF=0.500;MQ=34.13;MQ0=5;MQRankSum=2.897;QD=23.40;ReadPosRankSum=0.921;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAa/cGa|Q435R|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:16,68:84:99:1994,0,139
+chr1	135152	.	T	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.499;DP=86;Dels=0.00;FS=1.215;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.34;MQ0=3;MQRankSum=-0.614;QD=1.25;ReadPosRankSum=0.942;EFF=SYNONYMOUS_CODING(LOW|SILENT|gaT/gaC|D444|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:72,14:86:99:136,0,2271
+chr1	135153	.	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;DP=87;Dels=0.00;FS=1.186;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=37.69;MQ0=3;MQRankSum=-0.409;QD=1.65;ReadPosRankSum=0.537;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V445M|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:72,15:87:99:172,0,2269
+chr1	135160	.	C	G	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;DP=80;Dels=0.00;FS=2.719;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=38.64;MQ0=3;MQRankSum=0.297;QD=2.51;ReadPosRankSum=1.116;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tCt/tGt|S447C|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:66,14:80:99:229,0,2067
+chr1	135180	.	T	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;DP=74;Dels=0.00;FS=21.668;HaplotypeScore=16.1489;MLEAC=1;MLEAF=0.500;MQ=42.55;MQ0=0;MQRankSum=1.094;QD=3.70;ReadPosRankSum=1.690;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ttt/Att|F454I|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:61,13:74:99:302,0,1980
+chr1	135182	.	T	C	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;DP=73;Dels=0.00;FS=22.648;HaplotypeScore=16.1489;MLEAC=1;MLEAF=0.500;MQ=42.76;MQ0=0;MQRankSum=-0.479;QD=10.89;ReadPosRankSum=1.077;EFF=SYNONYMOUS_CODING(LOW|SILENT|ttT/ttC|F454|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:44,29:73:99:823,0,1443
+chr1	135209	.	A	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;DP=78;Dels=0.00;FS=18.781;HaplotypeScore=10.8281;MLEAC=1;MLEAF=0.500;MQ=48.03;MQ0=0;MQRankSum=-2.484;QD=12.02;ReadPosRankSum=0.229;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcA/gcG|A463|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:46,32:78:99:966,0,1557
+chr1	135218	.	T	C	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DP=76;Dels=0.00;FS=7.732;HaplotypeScore=20.2693;MLEAC=1;MLEAF=0.500;MQ=49.54;MQ0=0;MQRankSum=-1.200;QD=6.59;ReadPosRankSum=-0.624;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcT/tcC|S466|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:57,19:76:99:529,0,1942
+chr1	135220	.	A	G	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;DP=77;Dels=0.00;FS=5.434;HaplotypeScore=9.4397;MLEAC=1;MLEAF=0.500;MQ=49.95;MQ0=0;MQRankSum=-0.384;QD=6.30;ReadPosRankSum=-0.821;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAg/gGg|E467G|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:58,19:77:99:513,0,1945
+chr1	135242	.	G	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;DP=84;Dels=0.00;FS=4.355;HaplotypeScore=23.7688;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-2.169;QD=10.69;ReadPosRankSum=-0.189;EFF=SYNONYMOUS_CODING(LOW|SILENT|ccG/ccT|P474|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:52,32:84:99:926,0,1735
+chr1	135249	.	C	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;DP=83;Dels=0.00;FS=0.951;HaplotypeScore=23.7688;MLEAC=1;MLEAF=0.500;MQ=53.90;MQ0=0;MQRankSum=3.080;QD=7.48;ReadPosRankSum=1.491;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cca/Aca|P477T|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:61,22:83:99:649,0,2002
+chr1	135260	.	G	C	1586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;DP=77;Dels=0.00;FS=1.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.49;MQ0=0;MQRankSum=-0.838;QD=20.61;ReadPosRankSum=0.358;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcG/gcC|A480|Cc01g00100|mRNA||GSCOCT00012426001|Exon_chr1_133387_135269),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:27,50:77:99:1615,0,861
+chr1	135276	.	C	T	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;DP=78;Dels=0.00;FS=3.392;HaplotypeScore=25.9840;MLEAC=1;MLEAF=0.500;MQ=58.13;MQ0=0;MQRankSum=0.021;QD=9.15;ReadPosRankSum=0.503;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:53,25:78:99:742,0,1838
+chr1	135284	.	A	G	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;DP=83;Dels=0.00;FS=0.867;HaplotypeScore=45.6804;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=2.555;QD=10.96;ReadPosRankSum=-0.735;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:53,30:83:99:938,0,1841
+chr1	135290	.	A	G	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DP=80;Dels=0.00;FS=3.316;HaplotypeScore=43.6813;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=-0.055;QD=11.50;ReadPosRankSum=-0.730;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:50,30:80:99:948,0,1404
+chr1	135296	.	T	A	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DP=77;Dels=0.00;FS=3.797;HaplotypeScore=25.7468;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.051;QD=7.83;ReadPosRankSum=0.366;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:55,22:77:99:631,0,2017
+chr1	135305	.	C	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=18.7849;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-0.819;QD=2.55;ReadPosRankSum=-4.449;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:77,14:91:99:260,0,2802
+chr1	135319	.	A	G	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;DP=101;Dels=0.00;FS=0.864;HaplotypeScore=3.9995;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=0.932;QD=7.50;ReadPosRankSum=-0.871;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:74,27:101:99:786,0,2632
+chr1	135362	.	G	C	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DP=104;Dels=0.00;FS=0.933;HaplotypeScore=3.5999;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-0.569;QD=5.02;ReadPosRankSum=1.584;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:82,21:104:99:550,0,2813
+chr1	135376	.	T	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;DP=104;Dels=0.00;FS=0.969;HaplotypeScore=2.8632;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-2.044;QD=4.12;ReadPosRankSum=0.749;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:85,19:104:99:457,0,2999
+chr1	135384	.	G	A	3914.77	.	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=22.8484;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=33.17;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3943,301,0
+chr1	135391	.	T	G	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.718;DP=103;Dels=0.00;FS=2.944;HaplotypeScore=27.2496;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=-0.169;QD=7.15;ReadPosRankSum=0.641;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:74,28:103:99:765,0,2417
+chr1	135400	.	G	A	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;DP=108;Dels=0.00;FS=6.146;HaplotypeScore=26.0389;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=-2.758;QD=15.78;ReadPosRankSum=-0.354;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:56,52:108:99:1732,0,1799
+chr1	135425	.	T	C	2440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=100;Dels=0.00;FS=5.702;HaplotypeScore=37.9722;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=0;MQRankSum=-2.038;QD=24.41;ReadPosRankSum=-0.257;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:28,72:100:99:2469,0,843
+chr1	135428	.	G	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;DP=96;Dels=0.00;FS=3.339;HaplotypeScore=38.9718;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=0;MQRankSum=-1.010;QD=4.73;ReadPosRankSum=0.124;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:75,21:96:99:482,0,2684
+chr1	135433	.	G	T	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;DP=100;Dels=0.00;FS=5.032;HaplotypeScore=76.9445;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=0;MQRankSum=-4.688;QD=4.05;ReadPosRankSum=0.973;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:82,18:100:99:433,0,2862
+chr1	135440	.	A	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;DP=97;Dels=0.00;FS=0.920;HaplotypeScore=61.9081;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=-4.804;QD=5.41;ReadPosRankSum=-0.442;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:76,21:97:99:553,0,2671
+chr1	135443	.	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DP=97;Dels=0.00;FS=2.004;HaplotypeScore=60.8069;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=-4.533;QD=5.00;ReadPosRankSum=-0.206;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:76,21:97:99:513,0,2730
+chr1	135446	.	C	T	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;DP=97;Dels=0.00;FS=2.653;HaplotypeScore=42.8139;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=-7.372;QD=12.97;ReadPosRankSum=-0.666;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:55,42:97:99:1286,0,1882
+chr1	135450	.	C	T	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;DP=94;Dels=0.00;FS=2.740;HaplotypeScore=39.6045;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=0;MQRankSum=-7.169;QD=13.13;ReadPosRankSum=-0.593;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:54,40:94:99:1262,0,1853
+chr1	135469	.	C	T	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DP=101;Dels=0.00;FS=3.736;HaplotypeScore=21.2632;MLEAC=1;MLEAF=0.500;MQ=56.64;MQ0=0;MQRankSum=-8.200;QD=14.44;ReadPosRankSum=0.317;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:55,46:101:99:1487,0,1800
+chr1	135483	.	A	C	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;DP=96;Dels=0.00;FS=0.981;HaplotypeScore=66.5358;MLEAC=1;MLEAF=0.500;MQ=56.79;MQ0=0;MQRankSum=-3.811;QD=28.40;ReadPosRankSum=0.230;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,75:96:99:2755,0,482
+chr1	135489	.	T	G	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DP=97;Dels=0.00;FS=12.274;HaplotypeScore=43.2734;MLEAC=1;MLEAF=0.500;MQ=56.74;MQ0=0;MQRankSum=-7.619;QD=16.15;ReadPosRankSum=1.375;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:50,47:97:99:1595,0,1719
+chr1	135492	.	A	G	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;DP=97;Dels=0.00;FS=1.972;HaplotypeScore=44.2721;MLEAC=1;MLEAF=0.500;MQ=56.74;MQ0=0;MQRankSum=-4.134;QD=6.52;ReadPosRankSum=0.715;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:73,24:97:99:661,0,2654
+chr1	135504	.	C	T	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;DP=98;Dels=0.00;FS=21.343;HaplotypeScore=21.9832;MLEAC=1;MLEAF=0.500;MQ=57.14;MQ0=0;MQRankSum=-6.623;QD=15.06;ReadPosRankSum=2.581;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1504,0,1796
+chr1	135514	.	T	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DP=97;Dels=0.00;FS=12.661;HaplotypeScore=41.9659;MLEAC=1;MLEAF=0.500;MQ=56.88;MQ0=0;MQRankSum=-5.004;QD=6.73;ReadPosRankSum=0.614;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:73,24:97:99:681,0,2606
+chr1	135517	.	C	T	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=21.9725;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=2.170;QD=16.71;ReadPosRankSum=1.418;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1616,0,1560
+chr1	135526	.	T	G	3368.77	.	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=53.9823;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=26.71;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3397,256,0
+chr1	135527	.	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;DP=85;Dels=0.00;FS=8.852;HaplotypeScore=80.9742;MLEAC=1;MLEAF=0.500;MQ=57.70;MQ0=0;MQRankSum=-4.243;QD=2.79;ReadPosRankSum=1.642;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:72,13:85:99:265,0,2552
+chr1	135535	.	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DP=82;Dels=0.00;FS=8.551;HaplotypeScore=39.9876;MLEAC=1;MLEAF=0.500;MQ=57.98;MQ0=0;MQRankSum=-5.078;QD=3.08;ReadPosRankSum=1.676;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:69,13:82:99:281,0,2484
+chr1	135536	.	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DP=79;Dels=0.00;FS=4.308;HaplotypeScore=39.9876;MLEAC=1;MLEAF=0.500;MQ=58.26;MQ0=0;MQRankSum=-1.623;QD=4.20;ReadPosRankSum=1.137;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:52,14:79:99:360,0,1863
+chr1	135537	.	A	G	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;DP=78;Dels=0.00;FS=9.867;HaplotypeScore=39.9876;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-4.630;QD=11.14;ReadPosRankSum=1.297;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:50,28:78:99:897,0,1742
+chr1	135551	.	G	A	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;DP=91;Dels=0.00;FS=9.889;HaplotypeScore=1.9986;MLEAC=1;MLEAF=0.500;MQ=58.50;MQ0=0;MQRankSum=-4.719;QD=8.24;ReadPosRankSum=-1.655;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:63,27:91:99:778,0,2232
+chr1	135557	.	A	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;DP=92;Dels=0.00;FS=11.651;HaplotypeScore=3.9926;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=-3.944;QD=8.20;ReadPosRankSum=-1.158;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:65,27:92:99:783,0,2240
+chr1	135582	.	G	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;DP=97;Dels=0.00;FS=10.159;HaplotypeScore=29.4167;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-4.142;QD=6.48;ReadPosRankSum=2.534;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:72,24:97:99:657,0,2497
+chr1	135587	.	G	C	2286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;DP=96;Dels=0.00;FS=0.869;HaplotypeScore=28.5846;MLEAC=1;MLEAF=0.500;MQ=58.98;MQ0=0;MQRankSum=0.144;QD=23.82;ReadPosRankSum=0.830;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:29,67:96:99:2315,0,856
+chr1	135606	.	C	A	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;DP=96;Dels=0.00;FS=2.045;HaplotypeScore=21.9828;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=-0.629;QD=4.78;ReadPosRankSum=0.434;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:75,21:96:99:487,0,2576
+chr1	135609	.	C	A	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;DP=93;Dels=0.00;FS=7.797;HaplotypeScore=83.8468;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=-3.424;QD=7.92;ReadPosRankSum=-0.749;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:66,27:93:99:765,0,2259
+chr1	135618	.	C	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.853;DP=89;Dels=0.00;FS=1.036;HaplotypeScore=65.8507;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=1.727;QD=3.94;ReadPosRankSum=2.134;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:72,17:89:99:379,0,2429
+chr1	135632	.	G	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;DP=89;Dels=0.00;FS=3.725;HaplotypeScore=67.7422;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-1.496;QD=4.58;ReadPosRankSum=-0.189;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:71,18:89:99:436,0,2397
+chr1	135636	.	T	C	2955.77	.	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=82.6805;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.88;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,78:79:99:2984,226,0
+chr1	135637	.	A	C	1811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.105;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=83.6799;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=-0.341;QD=22.65;ReadPosRankSum=-0.215;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:24,56:80:99:1840,0,664
+chr1	135639	.	T	G	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DP=83;Dels=0.00;FS=11.996;HaplotypeScore=104.6691;MLEAC=1;MLEAF=0.500;MQ=58.83;MQ0=0;MQRankSum=-0.923;QD=4.39;ReadPosRankSum=0.569;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:65,18:83:99:393,0,2312
+chr1	135641	.	C	T	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;DP=86;Dels=0.00;FS=7.119;HaplotypeScore=129.6566;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=2.648;QD=6.67;ReadPosRankSum=-0.401;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:64,22:86:99:602,0,2169
+chr1	135642	.	C	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;DP=86;Dels=0.00;FS=7.119;HaplotypeScore=129.6566;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=2.954;QD=6.71;ReadPosRankSum=-0.144;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:64,22:86:99:605,0,2180
+chr1	135643	.	C	T	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=90;Dels=0.00;FS=9.549;HaplotypeScore=115.6735;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=-2.215;QD=4.20;ReadPosRankSum=0.801;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:71,19:90:99:406,0,2519
+chr1	135648	.	G	C	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;DP=94;Dels=0.00;FS=0.939;HaplotypeScore=81.8473;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-1.363;QD=6.44;ReadPosRankSum=-0.062;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:71,23:94:99:634,0,2439
+chr1	135650	.	G	A	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;DP=98;Dels=0.00;FS=0.925;HaplotypeScore=85.9035;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=-0.805;QD=6.04;ReadPosRankSum=0.553;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:75,23:98:99:620,0,2541
+chr1	135660	.	T	G	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;DP=101;Dels=0.00;FS=0.897;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-0.059;QD=6.71;ReadPosRankSum=0.846;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:76,25:101:99:706,0,2603
+chr1	135662	.	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=1.122;QD=6.70;ReadPosRankSum=0.532;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:75,26:101:99:705,0,2524
+chr1	135693	.	G	A	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;DP=102;Dels=0.00;FS=1.895;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=1;MQRankSum=1.915;QD=7.13;ReadPosRankSum=1.270;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:74,28:102:99:756,0,2603
+chr1	135705	.	C	T	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=1;MQRankSum=0.990;QD=6.44;ReadPosRankSum=0.400;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:76,26:103:99:692,0,2558
+chr1	135724	.	G	A	3782.77	.	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=12.9950;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=1;QD=35.47;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3811,286,0
+chr1	135725	.	C	A	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=12.9950;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=2;MQRankSum=0.224;QD=6.62;ReadPosRankSum=0.224;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:73,25:98:99:677,0,2539
+chr1	135734	.	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DP=84;Dels=0.00;FS=9.368;HaplotypeScore=43.9728;MLEAC=1;MLEAF=0.500;MQ=56.92;MQ0=3;MQRankSum=-0.578;QD=2.59;ReadPosRankSum=1.536;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:72,12:84:99:246,0,2508
+chr1	135736	.	C	G	2208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DP=87;Dels=0.00;FS=2.092;HaplotypeScore=32.9825;MLEAC=1;MLEAF=0.500;MQ=56.82;MQ0=3;MQRankSum=-1.198;QD=25.39;ReadPosRankSum=-0.331;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,66:87:99:2237,0,546
+chr1	135750	.	A	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DP=76;Dels=0.00;FS=5.360;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.60;MQ0=3;MQRankSum=-1.757;QD=1.50;ReadPosRankSum=2.431;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:66,10:76:99:142,0,2292
+chr1	135758	.	G	T	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=5.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.66;MQ0=3;MQRankSum=-3.574;QD=4.98;ReadPosRankSum=-1.937;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:61,18:79:99:422,0,2063
+chr1	135778	.	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=-4.222;QD=5.93;ReadPosRankSum=2.331;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:25,8:33:99:224,0,882
+chr1	135782	.	G	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=0;MQRankSum=-3.992;QD=5.41;ReadPosRankSum=3.567;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:24,7:31:99:196,0,843
+chr1	135800	.	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DP=36;Dels=0.00;FS=3.702;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-4.077;QD=3.97;ReadPosRankSum=1.519;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:29,7:36:99:171,0,1061
+chr1	135819	.	T	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DP=52;Dels=0.00;FS=6.289;HaplotypeScore=11.8640;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=0;MQRankSum=-1.616;QD=8.25;ReadPosRankSum=-2.282;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:37,15:52:99:457,0,1294
+chr1	135828	.	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;DP=51;Dels=0.00;FS=8.174;HaplotypeScore=22.8565;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=1.593;QD=4.52;ReadPosRankSum=-0.164;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:39,11:51:99:259,0,1414
+chr1	135836	.	G	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.890;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=12.5980;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=4.353;QD=12.80;ReadPosRankSum=2.497;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:36,24:60:99:796,0,1231
+chr1	135848	.	G	A	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DP=64;Dels=0.00;FS=2.112;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=0.656;QD=13.62;ReadPosRankSum=-1.333;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:36,28:64:99:900,0,1249
+chr1	135855	.	T	G	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;DP=69;Dels=0.00;FS=0.917;HaplotypeScore=17.9912;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=0;MQRankSum=1.635;QD=13.33;ReadPosRankSum=-2.061;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:40,29:69:99:948,0,1381
+chr1	135865	.	T	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;DP=67;Dels=0.00;FS=2.217;HaplotypeScore=55.9758;MLEAC=1;MLEAF=0.500;MQ=58.40;MQ0=0;MQRankSum=-0.993;QD=8.09;ReadPosRankSum=0.843;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:47,20:67:99:570,0,1674
+chr1	135868	.	A	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;DP=65;Dels=0.00;FS=1.000;HaplotypeScore=20.9924;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=1.676;QD=9.50;ReadPosRankSum=1.269;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),UPSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:44,21:65:99:646,0,1554
+chr1	135874	.	T	C	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;DP=70;Dels=0.00;FS=0.954;HaplotypeScore=19.9927;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=-2.097;QD=10.60;ReadPosRankSum=-0.176;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tTc/tCc|F2S|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_135870_135972),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:44,26:70:99:770,0,1499
+chr1	135880	.	T	G	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=58.19;MQ0=0;MQRankSum=-1.102;QD=10.01;ReadPosRankSum=0.598;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tTt/tGt|F4C|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_135870_135972),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:45,24:69:99:719,0,1540
+chr1	135884	.	T	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DP=70;Dels=0.00;FS=2.105;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=-0.179;QD=10.03;ReadPosRankSum=1.132;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),SYNONYMOUS_CODING(LOW|SILENT|caT/caC|H5|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_135870_135972),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:46,24:70:99:730,0,1622
+chr1	135900	.	C	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DP=74;Dels=0.00;FS=1.994;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=57.68;MQ0=0;MQRankSum=-0.685;QD=10.38;ReadPosRankSum=0.404;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),STOP_GAINED(HIGH|NONSENSE|Cga/Tga|R11*|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_135870_135972),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:47,27:74:99:796,0,1573
+chr1	135922	.	T	C	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=92;Dels=0.00;FS=1.814;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-1.479;QD=9.52;ReadPosRankSum=0.760;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTc/aCc|I18T|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_135870_135972),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:61,31:92:99:904,0,2103
+chr1	135936	.	A	G	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DP=84;Dels=0.00;FS=4.645;HaplotypeScore=25.8884;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=0;MQRankSum=1.810;QD=9.10;ReadPosRankSum=-0.211;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aca/Gca|T23A|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_135870_135972),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:57,27:84:99:793,0,1944
+chr1	135937	.	C	T	1766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=25.8884;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=1.487;QD=21.55;ReadPosRankSum=-0.188;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCa/aTa|T23I|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_135870_135972),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:30,52:82:99:1795,0,896
+chr1	135938	.	A	G	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=25.8884;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=1.699;QD=21.73;ReadPosRankSum=-0.255;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),SYNONYMOUS_CODING(LOW|SILENT|acA/acG|T23|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_135870_135972),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:30,52:82:99:1810,0,895
+chr1	135950	.	G	A	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=83;Dels=0.00;FS=4.423;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=0.851;QD=9.73;ReadPosRankSum=-0.919;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K27|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_135870_135972),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:56,27:83:99:836,0,1943
+chr1	135990	.	T	G	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=18.3925;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=-0.628;QD=8.58;ReadPosRankSum=0.831;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:46,21:67:99:603,0,1660
+chr1	135994	.	A	T	2749.77	.	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=31.63;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2778,211,0
+chr1	136009	.	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;DP=44;Dels=0.00;FS=6.444;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.106;QD=14.20;ReadPosRankSum=-2.510;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:653,0,848
+chr1	136065	.	A	T	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DP=46;Dels=0.00;FS=1.150;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.035;QD=12.34;ReadPosRankSum=1.749;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:27,18:46:99:596,0,963
+chr1	136086	.	G	A	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;DP=51;Dels=0.00;FS=2.381;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-1.043;QD=12.07;ReadPosRankSum=0.565;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:30,21:51:99:644,0,1054
+chr1	136090	.	A	G	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;DP=50;Dels=0.00;FS=2.463;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=-1.042;QD=12.52;ReadPosRankSum=-0.059;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:29,21:50:99:654,0,1012
+chr1	136102	.	G	A	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;DP=59;Dels=0.00;FS=2.203;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=0.365;QD=20.50;ReadPosRankSum=0.179;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,36:59:99:1238,0,690
+chr1	136134	.	C	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;DP=52;Dels=0.00;FS=11.273;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=1.346;QD=8.28;ReadPosRankSum=1.034;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:35,17:52:99:459,0,1143
+chr1	136138	.	C	T	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;DP=53;Dels=0.00;FS=12.293;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-0.829;QD=7.34;ReadPosRankSum=1.077;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:36,17:53:99:417,0,1249
+chr1	136150	.	G	C	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DP=51;Dels=0.00;FS=10.821;HaplotypeScore=17.3638;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-0.945;QD=10.37;ReadPosRankSum=-0.263;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:32,19:51:99:557,0,1120
+chr1	136165	.	A	G	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;DP=49;Dels=0.00;FS=8.545;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-0.736;QD=9.87;ReadPosRankSum=0.238;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:31,18:49:99:512,0,993
+chr1	136178	.	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DP=49;Dels=0.00;FS=8.560;HaplotypeScore=1.9248;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-2.250;QD=9.83;ReadPosRankSum=-0.031;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:31,18:49:99:510,0,1040
+chr1	136208	.	G	A	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;DP=40;Dels=0.00;FS=5.407;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-2.022;QD=7.12;ReadPosRankSum=-0.723;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:28,12:40:99:313,0,1004
+chr1	136237	.	T	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;DP=35;Dels=0.03;FS=1.803;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-1.694;QD=3.25;ReadPosRankSum=1.152;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:28,6:34:99:142,0,1006
+chr1	136238	.	T	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;DP=35;Dels=0.03;FS=1.803;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-1.423;QD=3.16;ReadPosRankSum=1.242;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:28,6:34:99:139,0,998
+chr1	136245	.	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;DP=38;Dels=0.00;FS=1.534;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-0.151;QD=3.26;ReadPosRankSum=1.280;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:31,7:38:99:152,0,1108
+chr1	136246	.	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DP=38;Dels=0.00;FS=1.534;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-1.054;QD=3.39;ReadPosRankSum=1.393;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:31,7:38:99:157,0,1099
+chr1	136281	.	A	G	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=2.132;QD=20.72;ReadPosRankSum=1.081;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:18,32:50:99:1064,0,533
+chr1	136286	.	T	A	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;DP=50;Dels=0.00;FS=1.154;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=1.147;QD=9.96;ReadPosRankSum=-0.430;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:33,17:50:99:526,0,1136
+chr1	136296	.	T	C	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.294;DP=57;Dels=0.00;FS=2.395;HaplotypeScore=1.7870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.166;QD=8.75;ReadPosRankSum=1.526;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:40,17:57:99:527,0,1372
+chr1	136297	.	A	C	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;DP=57;Dels=0.00;FS=1.124;HaplotypeScore=1.7870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.951;QD=8.80;ReadPosRankSum=1.788;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:40,17:57:99:530,0,1359
+chr1	136349	.	A	G	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;DP=55;Dels=0.00;FS=4.256;HaplotypeScore=2.8244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.501;QD=7.32;ReadPosRankSum=-2.806;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:40,15:55:99:431,0,1458
+chr1	136355	.	G	A	2168.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.7122;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.36;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2197,163,0
+chr1	136407	.	T	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.022;DP=36;Dels=0.00;FS=1.438;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=0;MQRankSum=-4.739;QD=7.63;ReadPosRankSum=1.305;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:25,11:36:99:303,0,897
+chr1	136411	.	G	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;DP=35;Dels=0.00;FS=3.074;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=54.96;MQ0=0;MQRankSum=-4.708;QD=7.94;ReadPosRankSum=1.723;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:24,11:35:99:306,0,864
+chr1	136414	.	A	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.761;DP=34;Dels=0.00;FS=1.456;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=54.80;MQ0=0;MQRankSum=-4.675;QD=8.23;ReadPosRankSum=1.951;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,11:34:99:308,0,808
+chr1	136416	.	G	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DP=33;Dels=0.00;FS=1.475;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=54.63;MQ0=0;MQRankSum=-4.640;QD=8.57;ReadPosRankSum=1.814;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:22,11:33:99:311,0,783
+chr1	136425	.	A	G	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;DP=37;Dels=0.00;FS=4.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.86;MQ0=0;MQRankSum=-5.166;QD=12.29;ReadPosRankSum=0.966;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,16:37:99:483,0,735
+chr1	136429	.	G	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DP=39;Dels=0.00;FS=6.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.85;MQ0=0;MQRankSum=-5.339;QD=12.84;ReadPosRankSum=0.549;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),INTRON(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,18:39:99:529,0,713
+chr1	136439	.	C	T	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;DP=42;Dels=0.00;FS=8.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.51;MQ0=0;MQRankSum=-5.553;QD=13.61;ReadPosRankSum=0.264;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gCt/gTt|A37V|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_136433_136467),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:22,20:42:99:600,0,750
+chr1	136450	.	C	G	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;DP=44;Dels=0.00;FS=8.887;HaplotypeScore=14.9765;MLEAC=1;MLEAF=0.500;MQ=51.92;MQ0=0;MQRankSum=-5.669;QD=12.77;ReadPosRankSum=0.884;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cat/Gat|H41D|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_136433_136467),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:590,0,832
+chr1	136462	.	G	A	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;DP=37;Dels=0.00;FS=5.041;HaplotypeScore=2.9993;MLEAC=1;MLEAF=0.500;MQ=51.93;MQ0=0;MQRankSum=-4.995;QD=9.59;ReadPosRankSum=1.675;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gag/Aag|E45K|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_136433_136467),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,14:37:99:383,0,810
+chr1	136465	.	T	A	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;DP=36;Dels=0.00;FS=5.077;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=51.37;MQ0=0;MQRankSum=-5.070;QD=11.02;ReadPosRankSum=1.283;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),STOP_LOST(HIGH|MISSENSE|Tga/Aga|*46R|Cc01g00110|mRNA||GSCOCT00012425001|Exon_chr1_136433_136467),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,15:36:99:425,0,704
+chr1	136487	.	G	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;DP=39;Dels=0.00;FS=7.323;HaplotypeScore=1.9787;MLEAC=1;MLEAF=0.500;MQ=53.86;MQ0=0;MQRankSum=-5.050;QD=8.53;ReadPosRankSum=1.475;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:26,13:39:99:361,0,895
+chr1	136488	.	T	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.143;DP=39;Dels=0.00;FS=7.323;HaplotypeScore=1.9787;MLEAC=1;MLEAF=0.500;MQ=53.86;MQ0=0;MQRankSum=-5.050;QD=8.66;ReadPosRankSum=1.445;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UPSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:26,13:39:99:366,0,788
+chr1	136547	.	A	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;DP=52;Dels=0.00;FS=24.103;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=1;MQRankSum=0.123;QD=15.98;ReadPosRankSum=1.840;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atA/atG|I7M|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:24,28:52:99:859,0,785
+chr1	136596	.	A	C	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;DP=52;Dels=0.00;FS=1.083;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-0.139;QD=18.76;ReadPosRankSum=-0.917;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aag/Cag|K24Q|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:22,30:52:99:1004,0,696
+chr1	136655	.	T	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=0.278;QD=15.84;ReadPosRankSum=1.301;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caT/caA|H43Q|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:18,20:38:99:630,0,576
+chr1	136658	.	A	G	1300.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=31.84;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atA/atG|I44M|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1329,102,0
+chr1	136742	.	C	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DP=48;Dels=0.00;FS=11.641;HaplotypeScore=1.8937;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=0.635;QD=17.29;ReadPosRankSum=-0.247;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|ttC/ttT|F72|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:20,27:48:99:858,0,624
+chr1	136752	.	C	T	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;DP=43;Dels=0.00;FS=4.498;HaplotypeScore=1.8940;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-1.528;QD=15.37;ReadPosRankSum=0.379;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cct/Tct|P76S|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:19,24:43:99:689,0,591
+chr1	136754	.	T	C	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DP=45;Dels=0.00;FS=8.549;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=-0.808;QD=15.51;ReadPosRankSum=1.172;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|ccT/ccC|P76|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:21,24:45:99:726,0,665
+chr1	136841	.	A	G	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;DP=46;Dels=0.00;FS=2.588;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=0.110;QD=17.34;ReadPosRankSum=0.265;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|gaA/gaG|E105|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:21,25:46:99:826,0,691
+chr1	136898	.	A	G	1598.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.55;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|gaA/gaG|E124|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1627,126,0
+chr1	136902	.	T	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.935;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.194;QD=13.13;ReadPosRankSum=-0.377;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|Ttg/Ctg|L126|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:25,20:46:99:632,0,609
+chr1	136996	.	A	G	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;DP=42;Dels=0.00;FS=1.141;HaplotypeScore=2.5774;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=1.082;QD=14.73;ReadPosRankSum=0.402;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAa/aGa|K157R|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:647,0,707
+chr1	137035	.	T	C	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;DP=56;Dels=0.00;FS=2.268;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.623;QD=14.32;ReadPosRankSum=1.066;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTg/gCg|V170A|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:29,27:56:99:830,0,902
+chr1	137064	.	G	A	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DP=65;Dels=0.00;FS=3.370;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.846;QD=16.57;ReadPosRankSum=0.020;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtt/Att|V180I|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:32,33:65:99:1105,0,993
+chr1	137119	.	A	G	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DP=59;Dels=0.00;FS=0.985;HaplotypeScore=3.6004;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-1.388;QD=18.93;ReadPosRankSum=-0.008;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAt/aGt|N198S|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:25,34:59:99:1145,0,816
+chr1	137153	.	A	G	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;DP=55;Dels=0.00;FS=2.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=1;MQRankSum=2.932;QD=17.69;ReadPosRankSum=-0.885;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|tcA/tcG|S209|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:26,29:55:99:1001,0,825
+chr1	137179	.	A	G	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7878;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=1;MQRankSum=-3.289;QD=13.79;ReadPosRankSum=-0.603;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAg/gGg|E218G|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:32,26:58:99:828,0,1091
+chr1	137275	.	G	A	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;DP=55;Dels=0.00;FS=4.048;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=56.44;MQ0=1;MQRankSum=-2.535;QD=20.30;ReadPosRankSum=0.922;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGa/aAa|R250K|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:20,35:55:99:1145,0,643
+chr1	137372	.	C	T	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;DP=73;Dels=0.00;FS=1.936;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=58.51;MQ0=0;MQRankSum=-0.028;QD=13.71;ReadPosRankSum=0.349;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|gtC/gtT|V282|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:40,33:73:99:1029,0,1332
+chr1	137373	.	A	G	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;DP=73;Dels=0.00;FS=1.936;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=58.51;MQ0=0;MQRankSum=-2.632;QD=14.48;ReadPosRankSum=0.272;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Act/Gct|T283A|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:40,33:73:99:1085,0,1343
+chr1	137483	.	G	A	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;DP=39;Dels=0.00;FS=1.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.97;MQ0=0;MQRankSum=-0.043;QD=11.64;ReadPosRankSum=-0.043;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atG/atA|M319I|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:23,16:39:99:482,0,810
+chr1	137571	.	A	G	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DP=61;Dels=0.00;FS=1.046;HaplotypeScore=1.9787;MLEAC=1;MLEAF=0.500;MQ=55.97;MQ0=0;MQRankSum=-2.341;QD=13.06;ReadPosRankSum=-0.022;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aat/Gat|N349D|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:35,26:61:99:825,0,1208
+chr1	137613	.	C	T	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;DP=57;Dels=0.00;FS=4.341;HaplotypeScore=3.9492;MLEAC=1;MLEAF=0.500;MQ=57.98;MQ0=0;MQRankSum=-2.620;QD=14.84;ReadPosRankSum=-0.665;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctc/Ttc|L363F|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:31,26:57:99:874,0,1052
+chr1	137666	.	C	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;DP=44;Dels=0.00;FS=1.184;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=52.01;MQ0=0;MQRankSum=-0.687;QD=17.20;ReadPosRankSum=1.422;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|tgC/tgT|C380|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:19,25:44:99:785,0,643
+chr1	137873	.	T	C	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=53.28;MQ0=0;MQRankSum=-1.416;QD=15.98;ReadPosRankSum=0.097;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtC|V449|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:25,25:50:99:827,0,840
+chr1	137891	.	C	T	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=53.27;MQ0=0;MQRankSum=1.660;QD=16.26;ReadPosRankSum=1.350;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|atC/atT|I455|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:24,26:50:99:841,0,766
+chr1	137927	.	A	T	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=52.75;MQ0=0;MQRankSum=-4.120;QD=12.43;ReadPosRankSum=-0.680;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|ccA/ccT|P467|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:32,26:58:99:749,0,1114
+chr1	138034	.	T	C	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.8939;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=0.781;QD=7.54;ReadPosRankSum=-1.513;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTt/gCt|V503A|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:33,13:46:99:375,0,1176
+chr1	138075	.	C	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;DP=48;Dels=0.00;FS=2.557;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=0;MQRankSum=-4.500;QD=14.02;ReadPosRankSum=-0.466;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|Ctg/Ttg|L517|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:26,22:48:99:701,0,894
+chr1	138170	.	A	G	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=54.39;MQ0=0;MQRankSum=-3.956;QD=13.84;ReadPosRankSum=-0.258;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|aaA/aaG|K548|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:22,18:40:99:582,0,750
+chr1	138221	.	G	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;DP=49;Dels=0.00;FS=4.125;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=53.04;MQ0=0;MQRankSum=-4.650;QD=14.73;ReadPosRankSum=1.474;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K565|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:24,24:49:99:750,0,740
+chr1	138281	.	C	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;DP=47;Dels=0.00;FS=8.620;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=54.36;MQ0=0;MQRankSum=-4.611;QD=12.82;ReadPosRankSum=0.332;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|acC/acT|T585|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:26,21:47:99:631,0,882
+chr1	138362	.	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=0;MQRankSum=-3.648;QD=16.45;ReadPosRankSum=0.302;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|gcT/gcC|A612|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:719,0,680
+chr1	138386	.	T	C	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=52.41;MQ0=0;MQRankSum=-3.153;QD=15.48;ReadPosRankSum=0.718;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),SYNONYMOUS_CODING(LOW|SILENT|ttT/ttC|F620|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:23,20:43:99:694,0,739
+chr1	138609	.	G	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DP=50;Dels=0.00;FS=3.842;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=48.15;MQ0=0;MQRankSum=-4.884;QD=12.04;ReadPosRankSum=0.573;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gag/Aag|E695K|Cc01g00120|mRNA||GSCOCT00012424001|Exon_chr1_136527_139057)	GT:AD:DP:GQ:PL	0/1:26,24:50:99:630,0,897
+chr1	138660	.	C	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.11;MQ0=0;MQRankSum=4.417;QD=18.88;ReadPosRankSum=0.528;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:22,30:52:99:1010,0,467
+chr1	138683	.	G	T	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;DP=56;Dels=0.00;FS=2.284;HaplotypeScore=2.8620;MLEAC=1;MLEAF=0.500;MQ=46.57;MQ0=0;MQRankSum=-4.417;QD=10.00;ReadPosRankSum=-2.357;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:31,25:56:99:588,0,1019
+chr1	138698	.	T	C	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;DP=58;Dels=0.00;FS=2.144;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.13;MQ0=0;MQRankSum=-3.995;QD=10.77;ReadPosRankSum=-1.900;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:32,26:58:99:653,0,1080
+chr1	138718	.	T	C	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DP=53;Dels=0.00;FS=5.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.57;MQ0=0;MQRankSum=-4.422;QD=13.60;ReadPosRankSum=-0.348;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:29,24:53:99:749,0,948
+chr1	138736	.	T	C	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DP=50;Dels=0.00;FS=10.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.58;MQ0=0;MQRankSum=-4.540;QD=16.34;ReadPosRankSum=-0.136;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:25,25:50:99:845,0,811
+chr1	138777	.	T	A	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;DP=53;Dels=0.00;FS=2.347;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=52.94;MQ0=0;MQRankSum=-4.937;QD=16.24;ReadPosRankSum=-1.005;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:27,26:53:99:889,0,952
+chr1	138778	.	C	T	2144.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=33.40;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2173,163,0
+chr1	138820	.	A	C	2124.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=31.15;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2153,160,0
+chr1	138922	.	A	T	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;DP=57;Dels=0.00;FS=1.039;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=51.61;MQ0=1;MQRankSum=-0.363;QD=12.79;ReadPosRankSum=-1.187;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:31,26:57:99:757,0,1026
+chr1	138960	.	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=1;QD=28.55;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2186,172,0
+chr1	138982	.	C	A	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=1;MQRankSum=0.793;QD=17.38;ReadPosRankSum=0.248;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:26,32:58:99:1036,0,849
+chr1	139024	.	A	T	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;DP=56;Dels=0.00;FS=5.451;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.72;MQ0=0;MQRankSum=-1.928;QD=18.30;ReadPosRankSum=0.478;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:25,31:56:99:1053,0,858
+chr1	139066	.	A	G	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=-3.328;QD=16.55;ReadPosRankSum=-0.622;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:29,29:58:99:988,0,1020
+chr1	139093	.	A	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=47;Dels=0.00;FS=4.452;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=55.31;MQ0=0;MQRankSum=-4.267;QD=16.85;ReadPosRankSum=-1.245;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,24:47:99:820,0,809
+chr1	139143	.	A	G	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;DP=38;Dels=0.00;FS=2.742;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.86;MQ0=0;MQRankSum=-4.926;QD=17.57;ReadPosRankSum=1.973;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:18,20:38:99:696,0,605
+chr1	139149	.	A	G	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DP=38;Dels=0.00;FS=2.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.61;MQ0=0;MQRankSum=-4.932;QD=18.23;ReadPosRankSum=1.233;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:17,21:38:99:721,0,567
+chr1	139163	.	C	T	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;DP=39;Dels=0.00;FS=6.884;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=52.85;MQ0=0;MQRankSum=-5.156;QD=14.30;ReadPosRankSum=1.391;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:20,19:39:99:586,0,689
+chr1	139224	.	A	G	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;DP=58;Dels=0.00;FS=3.833;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=54.37;MQ0=0;MQRankSum=-5.755;QD=12.22;ReadPosRankSum=0.039;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:34,24:58:99:737,0,1030
+chr1	139254	.	C	T	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;DP=60;Dels=0.00;FS=3.815;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=54.67;MQ0=0;MQRankSum=-4.339;QD=14.35;ReadPosRankSum=-0.594;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:33,27:60:99:889,0,1036
+chr1	139269	.	A	G	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DP=58;Dels=0.00;FS=1.019;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=0;MQRankSum=-4.651;QD=14.17;ReadPosRankSum=0.305;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:32,26:58:99:850,0,1089
+chr1	139286	.	A	G	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;DP=56;Dels=0.00;FS=3.856;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.14;MQ0=0;MQRankSum=-3.836;QD=15.19;ReadPosRankSum=0.222;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:30,26:56:99:879,0,1015
+chr1	139341	.	A	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.17;MQ0=0;MQRankSum=-2.059;QD=15.48;ReadPosRankSum=-0.421;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:24,21:45:99:725,0,819
+chr1	139358	.	A	T	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.28;MQ0=0;MQRankSum=-2.238;QD=14.18;ReadPosRankSum=-0.694;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:28,22:50:99:737,0,962
+chr1	139417	.	A	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.85;MQ0=0;MQRankSum=-5.263;QD=8.24;ReadPosRankSum=-1.884;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:33,17:50:99:440,0,1164
+chr1	139435	.	T	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=54.55;MQ0=0;MQRankSum=-5.052;QD=4.45;ReadPosRankSum=0.944;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:39,12:51:99:255,0,1407
+chr1	139441	.	G	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=54.34;MQ0=0;MQRankSum=-5.283;QD=5.05;ReadPosRankSum=0.845;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:39,13:52:99:291,0,1353
+chr1	139480	.	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.50;MQ0=0;MQRankSum=-4.475;QD=2.29;ReadPosRankSum=1.014;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:38,9:47:99:136,0,1324
+chr1	139483	.	T	C	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.24;MQ0=0;MQRankSum=5.087;QD=25.04;ReadPosRankSum=0.863;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:13,37:50:99:1280,0,278
+chr1	139488	.	T	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.71;MQ0=0;MQRankSum=-5.373;QD=6.01;ReadPosRankSum=-1.333;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:37,15:52:99:341,0,1293
+chr1	139495	.	G	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;DP=50;Dels=0.00;FS=1.248;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=53.45;MQ0=0;MQRankSum=-5.314;QD=6.36;ReadPosRankSum=-1.207;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:35,15:50:99:346,0,1235
+chr1	139501	.	T	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.9790;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-5.063;QD=6.62;ReadPosRankSum=-0.699;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:31,14:45:99:326,0,1098
+chr1	139502	.	A	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.9790;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-5.063;QD=6.55;ReadPosRankSum=-0.454;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:31,14:45:99:323,0,1098
+chr1	139534	.	T	C	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=51.00;MQ0=0;MQRankSum=-5.026;QD=15.83;ReadPosRankSum=-0.795;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:19,24:43:99:709,0,616
+chr1	139556	.	A	G	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.43;MQ0=0;MQRankSum=5.120;QD=12.09;ReadPosRankSum=-2.136;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:26,18:44:99:560,0,740
+chr1	139563	.	T	C	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=51.21;MQ0=0;MQRankSum=-5.014;QD=18.81;ReadPosRankSum=1.928;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:17,27:44:99:856,0,472
+chr1	139576	.	C	A	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=19.9086;MLEAC=1;MLEAF=0.500;MQ=51.06;MQ0=1;MQRankSum=-4.247;QD=21.52;ReadPosRankSum=1.511;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:14,24:38:99:846,0,350
+chr1	139610	.	C	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;DP=44;Dels=0.00;FS=11.681;HaplotypeScore=8.3569;MLEAC=1;MLEAF=0.500;MQ=48.86;MQ0=0;MQRankSum=-4.699;QD=13.06;ReadPosRankSum=-1.057;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:23,21:44:99:603,0,686
+chr1	139650	.	C	A	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;DP=45;Dels=0.00;FS=8.659;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.29;MQ0=0;MQRankSum=-3.849;QD=15.37;ReadPosRankSum=0.647;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:22,23:45:99:720,0,755
+chr1	139666	.	T	A	1813.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=29.58;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1842,138,0
+chr1	139700	.	T	C	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;DP=42;Dels=0.00;FS=2.709;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=53.09;MQ0=1;MQRankSum=-4.603;QD=15.66;ReadPosRankSum=-0.743;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:22,20:42:99:686,0,746
+chr1	139730	.	T	C	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DP=44;Dels=0.00;FS=2.648;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.08;MQ0=1;MQRankSum=-5.150;QD=13.86;ReadPosRankSum=0.037;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:638,0,806
+chr1	139736	.	A	G	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;DP=47;Dels=0.00;FS=4.288;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=1;MQRankSum=-4.921;QD=13.97;ReadPosRankSum=-0.637;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:24,23:47:99:685,0,804
+chr1	139754	.	C	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DP=44;Dels=0.00;FS=9.774;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=49.58;MQ0=1;MQRankSum=-5.101;QD=14.49;ReadPosRankSum=-0.061;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:21,23:44:99:666,0,663
+chr1	139766	.	T	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;DP=47;Dels=0.00;FS=19.585;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.61;MQ0=2;MQRankSum=-4.394;QD=11.61;ReadPosRankSum=0.874;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:574,0,790
+chr1	139816	.	T	A	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=40;Dels=0.00;FS=36.168;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.74;MQ0=1;MQRankSum=3.812;QD=18.44;ReadPosRankSum=0.871;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:16,24:40:99:766,0,353
+chr1	139888	.	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DP=34;Dels=0.00;FS=8.801;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.98;MQ0=0;MQRankSum=-4.243;QD=5.49;ReadPosRankSum=-1.319;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	0/1:26,8:34:99:215,0,931
+chr1	140035	.	C	T	1028.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.162;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=5.5143;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.764;QD=34.29;ReadPosRankSum=-0.387;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:2,27:29:43:1057,43,0
+chr1	140037	.	C	T	1021.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=5.5143;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.271;QD=32.96;ReadPosRankSum=0.924;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:1,29:30:44:1050,44,0
+chr1	140066	.	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.80;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1194,90,0
+chr1	140150	.	A	G	903.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.68;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:69:932,69,0
+chr1	140265	.	A	T	876.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.93;MQ0=0;QD=24.94;EFF=DOWNSTREAM(MODIFIER||||Cc01g00100|mRNA||GSCOCT00012426001|),DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:905,69,0
+chr1	140358	.	G	A	1191.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.65;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1220,90,0
+chr1	140388	.	T	C	1024.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.11;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),INTRON(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1053,78,0
+chr1	140546	.	T	C	430.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.03;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:36:459,36,0
+chr1	140560	.	T	C	561.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.13;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UTR_3_PRIME(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:45:590,45,0
+chr1	141091	.	G	A	812.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=16.5641;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=32.43;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:63:841,63,0
+chr1	141137	.	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,31:32:90:1195,90,0
+chr1	141143	.	C	T	1261.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1290,96,0
+chr1	141147	.	C	T	1086.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.15;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,31:31:84:1115,84,0
+chr1	141182	.	C	G	1085.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1114,84,0
+chr1	141263	.	G	A	1101.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1130,84,0
+chr1	141349	.	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.9990;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=30.27;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1119,84,0
+chr1	141378	.	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=30.32;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1244,96,0
+chr1	141387	.	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=27.07;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1170,90,0
+chr1	141396	.	C	T	955.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=32.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:75:984,75,0
+chr1	141400	.	T	C	1036.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=27.18;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1065,81,0
+chr1	141412	.	T	C	854.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=32.36;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,22:22:66:883,66,0
+chr1	141422	.	G	A	736.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=28.93;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,19:20:57:765,57,0
+chr1	141455	.	G	A	804.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.43;EFF=DOWNSTREAM(MODIFIER||||Cc01g00110|mRNA||GSCOCT00012425001|),DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:63:833,63,0
+chr1	141471	.	C	T	759.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.88;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:788,60,0
+chr1	141498	.	C	A	891.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.90;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:920,69,0
+chr1	141507	.	G	C	961.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.56;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:75:990,75,0
+chr1	141536	.	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.47;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1095,81,0
+chr1	141614	.	A	T	553.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.19;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:45:582,45,0
+chr1	141636	.	C	A	434.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.44;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:39:463,39,0
+chr1	141654	.	T	A	544.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.20;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:45:573,45,0
+chr1	141655	.	T	A	534.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:45:563,45,0
+chr1	142437	.	C	T	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;DP=27;Dels=0.00;FS=27.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=0;MQRankSum=-4.440;QD=13.66;ReadPosRankSum=-4.440;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:14,13:27:99:397,0,497
+chr1	142438	.	A	G	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;DP=27;Dels=0.00;FS=27.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=0;MQRankSum=4.392;QD=16.73;ReadPosRankSum=4.392;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:13,14:27:99:480,0,389
+chr1	142481	.	A	G	1079.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=33.74;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1108,90,0
+chr1	142494	.	T	C	884.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=32.77;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:75:913,75,0
+chr1	142601	.	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=31.28;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2093,165,0
+chr1	142776	.	G	A	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;DP=67;Dels=0.00;FS=3.384;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.34;MQ0=0;MQRankSum=-3.183;QD=20.85;ReadPosRankSum=1.355;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:25,42:67:99:1425,0,774
+chr1	142787	.	C	T	2578.77	.	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=24.09;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2607,199,0
+chr1	142805	.	A	G	2382.77	.	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=29.39;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2411,184,0
+chr1	142821	.	T	A	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=43.83;MQ0=0;MQRankSum=-1.966;QD=20.30;ReadPosRankSum=-0.732;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,37:62:99:1287,0,713
+chr1	142863	.	G	A	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DP=51;Dels=0.00;FS=2.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.90;MQ0=0;MQRankSum=-0.161;QD=16.58;ReadPosRankSum=-0.407;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,28:51:99:874,0,753
+chr1	142891	.	A	T	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=53;Dels=0.00;FS=3.828;HaplotypeScore=2.9990;MLEAC=1;MLEAF=0.500;MQ=56.01;MQ0=0;MQRankSum=2.468;QD=17.49;ReadPosRankSum=-0.294;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,28:53:99:955,0,777
+chr1	142898	.	A	G	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;DP=56;Dels=0.00;FS=2.268;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=56.99;MQ0=0;MQRankSum=0.197;QD=17.09;ReadPosRankSum=0.066;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,29:56:99:985,0,879
+chr1	142936	.	A	C	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DP=77;Dels=0.00;FS=0.875;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=-0.936;QD=18.23;ReadPosRankSum=-0.445;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,42:77:99:1432,0,1097
+chr1	142944	.	T	C	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DP=75;Dels=0.00;FS=1.980;HaplotypeScore=1.9788;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=0.683;QD=19.81;ReadPosRankSum=-1.458;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,44:75:99:1514,0,922
+chr1	142972	.	C	T	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;DP=75;Dels=0.00;FS=0.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=1.585;QD=18.42;ReadPosRankSum=1.190;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:33,42:75:99:1410,0,1088
+chr1	143047	.	G	C	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;DP=57;Dels=0.00;FS=5.471;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=2;MQRankSum=-0.379;QD=14.84;ReadPosRankSum=0.665;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,29:57:99:874,0,913
+chr1	143077	.	G	A	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DP=43;Dels=0.00;FS=4.575;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=1;MQRankSum=-1.876;QD=14.32;ReadPosRankSum=-0.038;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:644,0,718
+chr1	143079	.	T	A	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;DP=44;Dels=0.00;FS=6.548;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=1;MQRankSum=-1.497;QD=13.54;ReadPosRankSum=0.231;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,21:44:99:624,0,799
+chr1	143101	.	G	A	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;DP=58;Dels=0.00;FS=5.324;HaplotypeScore=5.2545;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=0;MQRankSum=-0.582;QD=15.00;ReadPosRankSum=-0.123;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,28:58:99:898,0,920
+chr1	143121	.	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DP=78;Dels=0.00;FS=16.462;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=0;MQRankSum=-4.301;QD=1.05;ReadPosRankSum=-3.566;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:69,9:78:99:110,0,2263
+chr1	143129	.	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;DP=82;Dels=0.00;FS=21.866;HaplotypeScore=20.8424;MLEAC=1;MLEAF=0.500;MQ=57.31;MQ0=0;MQRankSum=-4.844;QD=1.53;ReadPosRankSum=-2.748;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:71,11:82:99:154,0,2388
+chr1	143138	.	T	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;DP=85;Dels=0.00;FS=19.743;HaplotypeScore=26.7703;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=3.325;QD=10.00;ReadPosRankSum=1.658;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:51,34:85:99:878,0,1589
+chr1	143140	.	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DP=85;Dels=0.00;FS=27.442;HaplotypeScore=15.7969;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=-4.591;QD=3.11;ReadPosRankSum=-1.831;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:71,14:85:99:293,0,2284
+chr1	143161	.	G	A	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;DP=78;Dels=0.00;FS=0.906;HaplotypeScore=32.9944;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=0;MQRankSum=1.886;QD=11.66;ReadPosRankSum=-0.501;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:46,32:78:99:938,0,1383
+chr1	143163	.	C	A	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=33.0925;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=0;MQRankSum=3.100;QD=10.32;ReadPosRankSum=-0.545;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:46,31:78:99:833,0,1525
+chr1	143164	.	G	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;DP=79;Dels=0.00;FS=32.060;HaplotypeScore=33.8812;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=-4.706;QD=4.33;ReadPosRankSum=2.731;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:64,15:79:99:370,0,2093
+chr1	143165	.	G	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DP=79;Dels=0.00;FS=28.863;HaplotypeScore=33.8812;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=-3.856;QD=3.93;ReadPosRankSum=2.881;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:64,15:79:99:339,0,2068
+chr1	143178	.	C	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;DP=76;Dels=0.00;FS=33.120;HaplotypeScore=44.4775;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=-4.295;QD=4.14;ReadPosRankSum=3.343;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:62,14:76:99:343,0,1910
+chr1	143221	.	A	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;DP=63;Dels=0.00;FS=19.029;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=2;MQRankSum=-2.568;QD=1.30;ReadPosRankSum=-0.916;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:54,9:63:99:110,0,1876
+chr1	143253	.	G	T	2036.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=42.33;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2065,159,0
+chr1	143376	.	C	G	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;DP=51;Dels=0.00;FS=6.452;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=55.33;MQ0=6;MQRankSum=2.251;QD=20.51;ReadPosRankSum=-0.229;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,30:51:99:1074,0,461
+chr1	143406	.	G	A	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=55;Dels=0.00;FS=3.966;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.48;MQ0=2;MQRankSum=-1.903;QD=13.47;ReadPosRankSum=0.759;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:29,26:55:99:769,0,1020
+chr1	143414	.	A	G	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=56;Dels=0.00;FS=5.804;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=56.45;MQ0=2;MQRankSum=-0.572;QD=12.89;ReadPosRankSum=1.336;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:29,27:56:99:750,0,1015
+chr1	143459	.	G	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;DP=56;Dels=0.00;FS=5.668;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQ0=2;MQRankSum=1.522;QD=11.17;ReadPosRankSum=0.525;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,25:56:99:654,0,1069
+chr1	143490	.	A	G	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=-1.155;QD=11.50;ReadPosRankSum=0.052;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,23:54:99:649,0,1103
+chr1	143531	.	G	A	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=61;Dels=0.00;FS=2.178;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=0.591;QD=19.26;ReadPosRankSum=1.087;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,35:61:99:1203,0,835
+chr1	143603	.	C	T	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DP=57;Dels=0.00;FS=3.724;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=-1.269;QD=15.61;ReadPosRankSum=0.120;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:29,28:57:99:918,0,950
+chr1	143650	.	T	C	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=-0.267;QD=17.93;ReadPosRankSum=1.209;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,26:47:99:871,0,713
+chr1	143705	.	G	A	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DP=50;Dels=0.00;FS=10.323;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=1.538;QD=15.12;ReadPosRankSum=0.097;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,23:50:99:784,0,957
+chr1	143726	.	C	T	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DP=51;Dels=0.00;FS=4.147;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.74;MQ0=0;MQRankSum=0.349;QD=15.19;ReadPosRankSum=-1.179;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,24:51:99:803,0,907
+chr1	143837	.	A	G	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=52.74;MQ0=0;MQRankSum=-3.207;QD=15.49;ReadPosRankSum=2.365;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,28:55:99:880,0,915
+chr1	143843	.	G	T	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=52.62;MQ0=0;MQRankSum=-2.653;QD=15.86;ReadPosRankSum=1.953;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,30:58:99:948,0,954
+chr1	143851	.	A	T	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;DP=55;Dels=0.00;FS=2.282;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=52.36;MQ0=0;MQRankSum=-2.639;QD=17.25;ReadPosRankSum=0.789;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:24,31:55:99:977,0,823
+chr1	143867	.	T	A	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-2.076;QD=17.19;ReadPosRankSum=-0.993;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,36:63:99:1111,0,885
+chr1	143879	.	A	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DP=66;Dels=0.00;FS=0.942;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=53.64;MQ0=0;MQRankSum=-1.603;QD=16.06;ReadPosRankSum=-1.346;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:30,36:66:99:1088,0,1011
+chr1	143887	.	C	G	1133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;DP=70;Dels=0.00;FS=0.918;HaplotypeScore=4.7286;MLEAC=1;MLEAF=0.500;MQ=54.49;MQ0=0;MQRankSum=-0.633;QD=16.20;ReadPosRankSum=-1.598;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,38:70:99:1162,0,1037
+chr1	143960	.	C	T	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DP=49;Dels=0.00;FS=2.555;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=0.728;QD=12.06;ReadPosRankSum=-0.811;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),DOWNSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:30,19:49:99:619,0,1001
+chr1	144130	.	G	A	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;DP=62;Dels=0.00;FS=5.270;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=0.014;QD=18.33;ReadPosRankSum=-1.689;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UTR_3_PRIME(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:27,35:62:99:1165,0,864
+chr1	144149	.	G	A	1000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=1.013;QD=17.25;ReadPosRankSum=-1.839;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UTR_3_PRIME(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:27,31:58:99:1029,0,881
+chr1	144222	.	A	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DP=54;Dels=0.00;FS=5.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.87;MQ0=0;MQRankSum=-2.776;QD=15.38;ReadPosRankSum=-0.729;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),SYNONYMOUS_CODING(LOW|SILENT|cgT/cgC|R143|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,29:54:99:859,0,804
+chr1	144255	.	A	G	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;DP=54;Dels=0.00;FS=10.821;HaplotypeScore=2.7619;MLEAC=1;MLEAF=0.500;MQ=55.54;MQ0=0;MQRankSum=-5.069;QD=15.64;ReadPosRankSum=1.367;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),SYNONYMOUS_CODING(LOW|SILENT|acT/acC|T132|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,27:54:99:873,0,825
+chr1	144286	.	C	G	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DP=45;Dels=0.00;FS=1.238;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=54.87;MQ0=0;MQRankSum=-5.256;QD=15.22;ReadPosRankSum=1.192;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gGt/gCt|G122A|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,22:45:99:713,0,730
+chr1	144294	.	T	A	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;DP=46;Dels=0.00;FS=1.253;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=54.36;MQ0=0;MQRankSum=-5.317;QD=16.47;ReadPosRankSum=0.330;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaA/gaT|E119D|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:786,0,731
+chr1	144318	.	G	T	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DP=40;Dels=0.00;FS=5.217;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.65;MQ0=0;MQRankSum=-5.240;QD=14.62;ReadPosRankSum=-1.531;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),SYNONYMOUS_CODING(LOW|SILENT|cgC/cgA|R111|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:20,20:40:99:613,0,598
+chr1	144319	.	C	T	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DP=40;Dels=0.00;FS=2.910;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=0;MQRankSum=-5.180;QD=14.67;ReadPosRankSum=-1.312;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGc/cAc|R111H|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:20,20:40:99:615,0,628
+chr1	144346	.	G	C	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DP=45;Dels=0.00;FS=4.291;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=0;MQRankSum=-4.374;QD=17.19;ReadPosRankSum=0.400;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCt/aGt|T102S|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:20,25:45:99:802,0,630
+chr1	144351	.	A	C	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.002;DP=48;Dels=0.00;FS=2.471;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=55.03;MQ0=0;MQRankSum=-4.499;QD=15.33;ReadPosRankSum=1.692;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),SYNONYMOUS_CODING(LOW|SILENT|ccT/ccG|P100|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,25:48:99:764,0,687
+chr1	144382	.	T	G	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;DP=53;Dels=0.00;FS=2.371;HaplotypeScore=4.8928;MLEAC=1;MLEAF=0.500;MQ=56.28;MQ0=0;MQRankSum=-2.346;QD=14.58;ReadPosRankSum=2.798;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAt/gCt|D90A|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,25:53:99:801,0,829
+chr1	144385	.	T	C	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;DP=52;Dels=0.00;FS=2.379;HaplotypeScore=6.8884;MLEAC=1;MLEAF=0.500;MQ=56.21;MQ0=0;MQRankSum=-2.125;QD=15.05;ReadPosRankSum=2.399;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAt/gGt|D89G|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,25:52:99:811,0,831
+chr1	144434	.	T	A	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DP=55;Dels=0.00;FS=1.039;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.232;QD=12.49;ReadPosRankSum=-0.249;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aat/Tat|N73Y|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:33,22:55:99:715,0,1146
+chr1	144525	.	A	G	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.856;QD=18.21;ReadPosRankSum=-0.346;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),SYNONYMOUS_CODING(LOW|SILENT|cgT/cgC|R42|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:14,19:33:99:629,0,394
+chr1	144561	.	C	G	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DP=39;Dels=0.00;FS=1.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=-0.186;QD=18.71;ReadPosRankSum=1.042;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),SYNONYMOUS_CODING(LOW|SILENT|cgG/cgC|R30|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,23:39:99:758,0,482
+chr1	144564	.	C	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DP=37;Dels=0.00;FS=2.870;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=0.541;QD=19.10;ReadPosRankSum=0.943;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),SYNONYMOUS_CODING(LOW|SILENT|caG/caA|Q29|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:15,22:37:99:735,0,466
+chr1	144576	.	C	G	1458.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=35.22;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|ttG/ttC|L25F|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1487,114,0
+chr1	144606	.	G	C	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;DP=54;Dels=0.00;FS=2.347;HaplotypeScore=2.7334;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-0.276;QD=16.09;ReadPosRankSum=-0.898;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),SYNONYMOUS_CODING(LOW|SILENT|tcC/tcG|S15|Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,27:54:99:897,0,877
+chr1	144686	.	T	C	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;DP=54;Dels=0.00;FS=1.047;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-0.788;QD=16.87;ReadPosRankSum=-1.169;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UTR_5_PRIME(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887)	GT:AD:DP:GQ:PL	0/1:26,28:54:99:939,0,867
+chr1	144759	.	C	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.833;QD=14.26;ReadPosRankSum=1.126;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UTR_5_PRIME(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887)	GT:AD:DP:GQ:PL	0/1:20,18:38:99:570,0,686
+chr1	144778	.	G	C	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.50;MQ0=0;MQRankSum=-1.949;QD=17.02;ReadPosRankSum=-1.535;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),START_GAINED(LOW||||Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,18:34:99:607,0,531
+chr1	144839	.	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=1;MLEAF=0.500;MQ=56.40;MQ0=0;MQRankSum=-3.678;QD=8.56;ReadPosRankSum=-2.079;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UTR_5_PRIME(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|Exon_chr1_144043_144887)	GT:AD:DP:GQ:PL	0/1:24,11:35:99:328,0,819
+chr1	144896	.	C	T	1822.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=33.58;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1851,138,0
+chr1	144909	.	G	A	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;DP=44;Dels=0.00;FS=4.590;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=0;MQRankSum=0.603;QD=20.77;ReadPosRankSum=0.675;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:17,27:44:99:942,0,494
+chr1	144934	.	T	G	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DP=38;Dels=0.00;FS=17.088;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=0.893;QD=21.31;ReadPosRankSum=1.347;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:14,24:38:99:838,0,442
+chr1	144950	.	G	A	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;DP=38;Dels=0.00;FS=11.386;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-1.801;QD=22.23;ReadPosRankSum=0.762;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:12,25:38:99:873,0,375
+chr1	144960	.	A	G	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;DP=31;Dels=0.00;FS=13.484;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=0.675;QD=23.61;ReadPosRankSum=-0.762;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:9,22:31:99:760,0,270
+chr1	144980	.	T	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;DP=27;Dels=0.00;FS=10.401;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=0.879;QD=10.70;ReadPosRankSum=-0.276;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:17,10:27:99:317,0,537
+chr1	145002	.	C	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DP=27;Dels=0.00;FS=10.401;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=0.427;QD=8.92;ReadPosRankSum=0.778;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:17,10:27:99:269,0,580
+chr1	145030	.	C	T	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;DP=27;Dels=0.00;FS=7.832;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=-0.704;QD=15.14;ReadPosRankSum=0.218;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:14,13:27:99:437,0,486
+chr1	145051	.	C	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;DP=26;Dels=0.00;FS=10.770;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-0.571;QD=19.38;ReadPosRankSum=-1.038;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:11,15:26:99:532,0,376
+chr1	145056	.	T	C	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DP=25;Dels=0.00;FS=10.578;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=1.248;QD=12.11;ReadPosRankSum=1.525;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:15,10:25:99:331,0,511
+chr1	145062	.	C	T	1092.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=29.15;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1121,84,0
+chr1	145137	.	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=17.5729;MLEAC=1;MLEAF=0.500;MQ=56.19;MQ0=0;MQRankSum=-3.783;QD=5.84;ReadPosRankSum=-3.420;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:19,7:26:99:180,0,645
+chr1	145149	.	G	C	959.1	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.936;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=2;MQRankSum=1.244;QD=29.97;ReadPosRankSum=2.005;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:5,27:32:11:987,11,0
+chr1	145165	.	C	A	1164.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=3;QD=33.28;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:96:1193,96,0
+chr1	145178	.	T	A	1075.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=3;QD=33.62;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:87:1104,87,0
+chr1	145196	.	A	T	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;DP=31;Dels=0.00;FS=4.262;HaplotypeScore=15.6286;MLEAC=1;MLEAF=0.500;MQ=48.93;MQ0=3;MQRankSum=-2.370;QD=20.54;ReadPosRankSum=1.908;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:10,19:31:99:665,0,196
+chr1	145230	.	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=40;Dels=0.00;FS=9.177;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=2;MQRankSum=1.303;QD=8.29;ReadPosRankSum=2.151;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,13:40:99:360,0,901
+chr1	145381	.	T	C	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=9.9562;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=1;MQRankSum=0.283;QD=22.64;ReadPosRankSum=-0.321;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:9,27:36:99:866,0,203
+chr1	145385	.	A	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=9.9562;MLEAC=1;MLEAF=0.500;MQ=56.75;MQ0=1;MQRankSum=-0.159;QD=5.89;ReadPosRankSum=0.619;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:29,9:38:99:252,0,952
+chr1	145416	.	T	C	1041.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=23.0537;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=1;QD=31.57;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:87:1070,87,0
+chr1	145429	.	C	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DP=33;Dels=0.00;FS=4.709;HaplotypeScore=14.4456;MLEAC=1;MLEAF=0.500;MQ=53.98;MQ0=1;MQRankSum=-2.077;QD=14.17;ReadPosRankSum=1.057;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:18,15:33:99:496,0,578
+chr1	145442	.	C	T	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;DP=28;Dels=0.00;FS=4.661;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.85;MQ0=1;MQRankSum=2.415;QD=17.49;ReadPosRankSum=-2.025;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:12,16:28:99:518,0,409
+chr1	145448	.	T	C	377.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=31.09;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
+chr1	145453	.	A	G	385.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=26.35;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:30:414,30,0
+chr1	145503	.	G	A,C	789.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.79;MQ0=0;QD=29.23;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/2:0,19,8:27:99:956,264,207,691,0,667
+chr1	145509	.	G	A	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;DP=26;Dels=0.00;FS=1.970;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=0.472;QD=23.26;ReadPosRankSum=1.528;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:8,18:26:99:633,0,240
+chr1	145512	.	C	T	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;DP=23;Dels=0.00;FS=1.824;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=1.711;QD=9.29;ReadPosRankSum=-1.840;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:15,8:23:99:242,0,524
+chr1	145513	.	G	A	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;DP=23;Dels=0.00;FS=1.824;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=-1.904;QD=20.90;ReadPosRankSum=1.646;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:8,15:23:99:509,0,246
+chr1	145515	.	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=1.126;QD=10.13;ReadPosRankSum=-1.945;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:14,8:22:99:251,0,503
+chr1	145531	.	A	G	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=-1.288;QD=17.10;ReadPosRankSum=-1.733;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:8,10:18:99:336,0,240
+chr1	145534	.	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=2.518;QD=11.41;ReadPosRankSum=2.106;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:11,8:19:99:245,0,339
+chr1	145538	.	T	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-1.376;QD=16.92;ReadPosRankSum=-2.223;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:7,9:16:99:299,0,219
+chr1	145544	.	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.50;MQ0=0;MQRankSum=1.134;QD=11.81;ReadPosRankSum=2.793;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:7,5:12:99:170,0,230
+chr1	145555	.	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=56.99;MQ0=0;MQRankSum=-0.470;QD=12.78;ReadPosRankSum=-2.450;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:5,5:10:99:156,0,173
+chr1	145615	.	A	C	535.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=32.10;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,14:14:42:564,42,0
+chr1	145642	.	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=8.6529;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=31.83;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1164,87,0
+chr1	145654	.	T	C	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;DP=31;Dels=0.00;FS=1.862;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.94;MQ0=1;MQRankSum=-2.198;QD=15.83;ReadPosRankSum=0.249;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,15:31:99:519,0,451
+chr1	145666	.	G	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;DP=33;Dels=0.00;FS=1.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.78;MQ0=2;MQRankSum=-1.364;QD=13.72;ReadPosRankSum=1.482;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:18,15:33:99:481,0,521
+chr1	145673	.	T	C	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;DP=35;Dels=0.00;FS=1.624;HaplotypeScore=15.4641;MLEAC=1;MLEAF=0.500;MQ=52.28;MQ0=2;MQRankSum=0.955;QD=13.76;ReadPosRankSum=-0.630;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:17,18:35:99:510,0,570
+chr1	145676	.	A	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;DP=36;Dels=0.00;FS=1.666;HaplotypeScore=16.4306;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=2;MQRankSum=0.707;QD=13.02;ReadPosRankSum=0.224;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:18,18:36:99:497,0,607
+chr1	145688	.	A	G	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=2;MQRankSum=-0.944;QD=15.17;ReadPosRankSum=-0.264;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:544,0,419
+chr1	145689	.	C	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=2;MQRankSum=1.171;QD=11.67;ReadPosRankSum=0.264;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:425,0,541
+chr1	145706	.	C	T	986.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=2;QD=32.89;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:78:1015,78,0
+chr1	145712	.	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=2;QD=32.51;EFF=DOWNSTREAM(MODIFIER||||Cc01g00120|mRNA||GSCOCT00012424001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,31:31:81:1036,81,0
+chr1	145783	.	G	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;DP=19;Dels=0.00;FS=2.199;HaplotypeScore=2.5225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.549;QD=19.15;ReadPosRankSum=2.409;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:7,12:19:99:392,0,216
+chr1	145845	.	C	T	1598.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=26.69;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1627,120,0
+chr1	145926	.	A	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;DP=43;Dels=0.00;FS=1.186;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=2.423;QD=15.23;ReadPosRankSum=0.621;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,20:43:99:683,0,719
+chr1	145928	.	A	T	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;DP=41;Dels=0.00;FS=2.731;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.19;MQ0=0;MQRankSum=-0.745;QD=16.12;ReadPosRankSum=-0.588;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:19,22:41:99:689,0,634
+chr1	145949	.	T	C	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-1.907;QD=16.95;ReadPosRankSum=0.971;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:20,25:45:99:791,0,650
+chr1	145950	.	G	C	1750.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=26.60;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1779,135,0
+chr1	145957	.	T	C	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQ0=0;MQRankSum=-2.937;QD=19.86;ReadPosRankSum=0.461;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:18,28:46:99:942,0,588
+chr1	145961	.	G	A	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;DP=47;Dels=0.00;FS=1.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=-3.067;QD=19.74;ReadPosRankSum=1.160;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:19,28:47:99:956,0,621
+chr1	145971	.	T	C	1794.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=30.91;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1823,135,0
+chr1	145982	.	C	T	1821.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7334;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=35.83;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1850,138,0
+chr1	145991	.	T	C	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;DP=40;Dels=0.00;FS=2.157;HaplotypeScore=1.7334;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=0;MQRankSum=-0.969;QD=31.44;ReadPosRankSum=2.998;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:4,36:40:39:1286,0,39
+chr1	145995	.	C	T	1327.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.079;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3985;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.621;QD=34.94;ReadPosRankSum=2.190;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:2,36:38:38:1356,38,0
+chr1	146000	.	G	A	1358.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.90;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1387,108,0
+chr1	146028	.	T	C	1707.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.8730;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=27.76;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1736,135,0
+chr1	146053	.	A	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;DP=42;Dels=0.00;FS=1.216;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=0.654;QD=14.85;ReadPosRankSum=-1.484;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:652,0,659
+chr1	146141	.	G	C	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;DP=55;Dels=0.00;FS=1.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=0.379;QD=16.12;ReadPosRankSum=0.093;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,27:55:99:915,0,948
+chr1	146183	.	C	T	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;DP=61;Dels=0.00;FS=13.794;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=0.166;QD=14.73;ReadPosRankSum=1.165;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:33,28:61:99:927,0,1096
+chr1	146259	.	G	A	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DP=50;Dels=0.00;FS=1.112;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-2.160;QD=13.60;ReadPosRankSum=0.225;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,22:50:99:708,0,962
+chr1	146273	.	A	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DP=47;Dels=0.00;FS=2.512;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=-0.672;QD=14.27;ReadPosRankSum=0.117;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:699,0,859
+chr1	146296	.	T	C	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;DP=51;Dels=0.00;FS=2.461;HaplotypeScore=1.7074;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-1.406;QD=13.64;ReadPosRankSum=0.802;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,24:51:99:724,0,886
+chr1	146334	.	G	A	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DP=54;Dels=0.00;FS=15.099;HaplotypeScore=4.3788;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=0.234;QD=13.53;ReadPosRankSum=-0.892;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,28:54:99:759,0,888
+chr1	146352	.	A	C	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;DP=51;Dels=0.00;FS=10.821;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=1.008;QD=16.62;ReadPosRankSum=0.801;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,25:51:99:876,0,875
+chr1	146412	.	A	G	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-1.487;QD=17.29;ReadPosRankSum=-0.974;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,26:47:99:841,0,718
+chr1	146446	.	G	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=57.03;MQ0=0;MQRankSum=-3.670;QD=13.83;ReadPosRankSum=-0.730;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,24:49:99:706,0,869
+chr1	146451	.	T	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=56.97;MQ0=0;MQRankSum=-1.455;QD=13.94;ReadPosRankSum=-0.796;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,25:50:99:725,0,868
+chr1	146456	.	G	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9978;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=-3.167;QD=10.90;ReadPosRankSum=0.452;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:24,19:44:99:508,0,846
+chr1	146467	.	C	T	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.9988;MLEAC=1;MLEAF=0.500;MQ=55.70;MQ0=0;MQRankSum=-3.722;QD=12.56;ReadPosRankSum=-0.562;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:19,18:37:99:493,0,671
+chr1	146489	.	T	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=6.7989;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=-3.721;QD=8.78;ReadPosRankSum=3.030;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,12:38:99:362,0,945
+chr1	146502	.	C	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;DP=40;Dels=0.00;FS=2.861;HaplotypeScore=82.1865;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=-2.486;QD=11.52;ReadPosRankSum=2.989;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,15:40:99:489,0,888
+chr1	146626	.	C	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=0;MQRankSum=0.151;QD=9.56;ReadPosRankSum=-0.179;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,14:41:99:420,0,892
+chr1	146707	.	A	T	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=51.1918;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-0.045;QD=14.13;ReadPosRankSum=-0.846;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,25:53:99:777,0,951
+chr1	146722	.	C	T	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DP=53;Dels=0.00;FS=2.427;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=-0.514;QD=12.00;ReadPosRankSum=0.966;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:664,0,1073
+chr1	146734	.	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;DP=53;Dels=0.00;FS=2.739;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=-2.057;QD=8.69;ReadPosRankSum=2.226;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,18:53:99:489,0,1193
+chr1	146736	.	C	T	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;DP=53;Dels=0.00;FS=2.739;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=-1.906;QD=9.05;ReadPosRankSum=2.432;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,18:53:99:508,0,1187
+chr1	146737	.	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;DP=53;Dels=0.00;FS=2.739;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=-2.038;QD=9.15;ReadPosRankSum=2.507;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,18:53:99:513,0,1186
+chr1	146738	.	G	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DP=53;Dels=0.00;FS=2.739;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=-1.005;QD=8.94;ReadPosRankSum=2.470;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,18:53:99:502,0,1205
+chr1	146751	.	T	C	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;DP=56;Dels=0.00;FS=8.313;HaplotypeScore=2.7878;MLEAC=1;MLEAF=0.500;MQ=57.36;MQ0=1;MQRankSum=2.036;QD=19.41;ReadPosRankSum=-0.424;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:22,34:56:99:1115,0,613
+chr1	146757	.	T	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;DP=54;Dels=0.00;FS=8.599;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=57.26;MQ0=1;MQRankSum=-1.537;QD=11.00;ReadPosRankSum=-0.118;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:32,22:54:99:622,0,1058
+chr1	146765	.	T	C	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;DP=50;Dels=0.00;FS=2.814;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=57.67;MQ0=1;MQRankSum=-1.838;QD=9.12;ReadPosRankSum=0.011;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:32,18:50:99:484,0,1120
+chr1	146805	.	C	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;DP=39;Dels=0.00;FS=3.130;HaplotypeScore=1.7306;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=1;MQRankSum=0.738;QD=8.51;ReadPosRankSum=0.585;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,14:39:99:360,0,832
+chr1	146811	.	A	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;DP=41;Dels=0.00;FS=1.258;HaplotypeScore=1.7306;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=1;MQRankSum=-0.246;QD=10.92;ReadPosRankSum=-0.821;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,18:41:99:476,0,771
+chr1	146917	.	T	C	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DP=34;Dels=0.00;FS=11.504;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=0;MQRankSum=-0.919;QD=22.14;ReadPosRankSum=0.523;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:12,22:34:99:781,0,382
+chr1	146962	.	C	T	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;DP=33;Dels=0.00;FS=8.473;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=57.13;MQ0=0;MQRankSum=0.387;QD=12.14;ReadPosRankSum=-0.387;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:20,13:33:99:429,0,656
+chr1	147004	.	A	G	326.78	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=28.95;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:27:355,27,0
+chr1	147012	.	A	G	322.78	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=27.55;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:27:351,27,0
+chr1	147033	.	A	G	283.78	.	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=27.26;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,8:8:24:312,24,0
+chr1	147043	.	G	A	158.9	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.198;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=1;MQRankSum=1.495;QD=19.86;ReadPosRankSum=0.922;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:3,5:8:15:187,15,0
+chr1	147044	.	C	T	132.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=1;MQRankSum=1.380;QD=18.86;ReadPosRankSum=1.380;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:3,4:7:12:160,12,0
+chr1	147046	.	C	T	132.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=1;MQRankSum=2.017;QD=14.67;ReadPosRankSum=2.017;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:5,4:9:12:160,12,0
+chr1	147053	.	C	T	129.03	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=1;QD=11.73;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:12:157,12,0
+chr1	147055	.	T	C	126.03	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=1;QD=11.46;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:12:154,12,0
+chr1	147074	.	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=4.7802;MLEAC=1;MLEAF=0.500;MQ=29.47;MQ0=1;MQRankSum=2.617;QD=5.25;ReadPosRankSum=-1.880;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:17,6:23:99:149,0,214
+chr1	147113	.	A	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=27.3842;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=3;MQRankSum=1.937;QD=2.30;ReadPosRankSum=2.310;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:30,6:36:99:111,0,296
+chr1	147139	.	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=16.6145;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=11;MQRankSum=2.940;QD=6.11;ReadPosRankSum=1.127;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:34,18:53:99:352,0,249
+chr1	147150	.	T	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=10.0978;MLEAC=1;MLEAF=0.500;MQ=26.62;MQ0=11;MQRankSum=-1.429;QD=2.04;ReadPosRankSum=-1.554;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:128,0,456
+chr1	147170	.	G	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=42.8592;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=13;MQRankSum=3.898;QD=6.95;ReadPosRankSum=-1.311;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:34,13:47:99:355,0,181
+chr1	147223	.	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=4.9798;MLEAC=1;MLEAF=0.500;MQ=20.60;MQ0=4;MQRankSum=-2.013;QD=3.22;ReadPosRankSum=-1.604;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:8,18:26:99:112,0,126
+chr1	147226	.	G	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=4.9798;MLEAC=1;MLEAF=0.500;MQ=21.38;MQ0=3;MQRankSum=1.702;QD=2.41;ReadPosRankSum=1.702;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,8:24:86:86,0,115
+chr1	147227	.	C	A	23.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=6.9023;MLEAC=1;MLEAF=0.500;MQ=21.38;MQ0=3;MQRankSum=0.910;QD=0.99;ReadPosRankSum=-0.667;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:13,5:24:52:52,0,159
+chr1	147238	.	A	G	178.8	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=5.5670;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=2;QD=10.52;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:21:207,21,0
+chr1	147243	.	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=7.5617;MLEAC=1;MLEAF=0.500;MQ=22.90;MQ0=2;MQRankSum=0.755;QD=3.39;ReadPosRankSum=1.200;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:12,8:20:96:96,0,131
+chr1	147246	.	A	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=7.5617;MLEAC=1;MLEAF=0.500;MQ=24.50;MQ0=1;MQRankSum=1.559;QD=2.56;ReadPosRankSum=-2.126;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:17,4:21:82:82,0,176
+chr1	147259	.	A	G	289.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=19;Dels=0.00;FS=4.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=1;MQRankSum=1.185;QD=15.24;ReadPosRankSum=-1.303;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:3,16:19:7:317,7,0
+chr1	147272	.	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;DP=16;Dels=0.00;FS=3.522;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=31.58;MQ0=1;MQRankSum=2.298;QD=9.11;ReadPosRankSum=-2.062;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:10,6:16:99:174,0,100
+chr1	147273	.	T	C	302.78	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=1;QD=18.92;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:1,15:16:27:331,27,0
+chr1	147296	.	A	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;DP=18;Dels=0.00;FS=7.404;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.13;MQ0=0;MQRankSum=3.532;QD=16.93;ReadPosRankSum=-0.530;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:9,9:18:51:333,0,51
+chr1	147357	.	A	T	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;DP=30;Dels=0.00;FS=28.709;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=6;MQRankSum=-3.766;QD=4.79;ReadPosRankSum=-1.133;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,14:30:99:172,0,529
+chr1	147416	.	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DP=10;Dels=0.00;FS=15.441;HaplotypeScore=26.0957;MLEAC=1;MLEAF=0.500;MQ=30.35;MQ0=3;MQRankSum=-1.754;QD=3.98;ReadPosRankSum=-1.754;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:6,4:10:68:68,0,134
+chr1	147424	.	A	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=8;Dels=0.00;FS=11.761;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=30.85;MQ0=2;MQRankSum=1.380;QD=13.85;ReadPosRankSum=1.380;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:4,4:8:31:139,0,31
+chr1	147427	.	T	C	164.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=1;QD=23.55;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:18:193,18,0
+chr1	147428	.	T	C	173.84	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=1;QD=24.83;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,7:7:18:202,18,0
+chr1	147440	.	C	T	145.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.86;MQ0=2;MQRankSum=2.219;QD=13.27;ReadPosRankSum=-0.876;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:6,5:11:5:173,0,5
+chr1	147461	.	G	A	174.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=8.9694;MLEAC=1;MLEAF=0.500;MQ=32.41;MQ0=2;MQRankSum=3.016;QD=11.65;ReadPosRankSum=-1.493;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:9,6:15:24:203,0,24
+chr1	147474	.	C	T	286.9	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=10.9207;MLEAC=1;MLEAF=0.500;MQ=41.09;MQ0=2;MQRankSum=3.281;QD=15.94;ReadPosRankSum=-2.752;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:9,9:18:15:315,0,15
+chr1	147490	.	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DP=23;Dels=0.00;FS=3.834;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=54.48;MQ0=0;MQRankSum=2.760;QD=12.95;ReadPosRankSum=3.318;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:13,10:23:99:326,0,430
+chr1	147522	.	C	T	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;DP=30;Dels=0.00;FS=1.449;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=54.65;MQ0=0;MQRankSum=-3.516;QD=17.83;ReadPosRankSum=-0.963;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:13,17:30:99:563,0,394
+chr1	147528	.	A	G	1043.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=31.37;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1072,81,0
+chr1	147529	.	T	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.492;DP=27;Dels=0.00;FS=1.598;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=0;MQRankSum=3.380;QD=12.77;ReadPosRankSum=0.962;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,11:27:99:373,0,495
+chr1	147542	.	C	T	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;DP=33;Dels=0.00;FS=5.188;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.17;MQ0=0;MQRankSum=-2.900;QD=17.30;ReadPosRankSum=-0.234;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,17:33:99:599,0,528
+chr1	147543	.	C	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=34;Dels=0.00;FS=3.064;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQ0=0;MQRankSum=-1.639;QD=17.52;ReadPosRankSum=-0.535;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,18:34:99:624,0,489
+chr1	147546	.	G	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;DP=35;Dels=0.00;FS=3.108;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=3.560;QD=12.42;ReadPosRankSum=0.248;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:19,16:35:99:463,0,624
+chr1	147575	.	G	A	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DP=42;Dels=0.00;FS=4.613;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.79;MQ0=0;MQRankSum=-2.836;QD=20.26;ReadPosRankSum=-0.194;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,26:42:99:879,0,470
+chr1	147578	.	A	C	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DP=41;Dels=0.00;FS=2.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.07;MQ0=0;MQRankSum=2.964;QD=10.43;ReadPosRankSum=0.744;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,15:41:99:456,0,851
+chr1	147586	.	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=32.80;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1444,114,0
+chr1	147591	.	C	T	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=35;Dels=0.00;FS=1.344;HaplotypeScore=1.7338;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=-2.317;QD=18.31;ReadPosRankSum=0.850;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:15,20:35:99:669,0,479
+chr1	147594	.	G	C,T	1053.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.02;MQ0=0;QD=30.98;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/2:0,19,15:34:99:1240,557,500,683,0,638
+chr1	147597	.	A	G	1257.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.7338;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=24.91;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1286,99,0
+chr1	147598	.	G	A	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DP=33;Dels=0.00;FS=5.093;HaplotypeScore=1.7338;MLEAC=1;MLEAF=0.500;MQ=52.79;MQ0=0;MQRankSum=-2.045;QD=19.33;ReadPosRankSum=0.166;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:13,20:33:99:666,0,407
+chr1	147606	.	A	C	1323.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=29.38;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1352,105,0
+chr1	147628	.	C	T	1132.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=33.91;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1161,90,0
+chr1	147635	.	A	G	947.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=28.17;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,26:26:78:976,78,0
+chr1	147636	.	C	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;DP=26;Dels=0.00;FS=1.796;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.40;MQ0=0;MQRankSum=-2.081;QD=23.18;ReadPosRankSum=1.272;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:7,19:26:99:631,0,203
+chr1	147641	.	T	A	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.93;MQ0=0;MQRankSum=-1.623;QD=24.39;ReadPosRankSum=1.241;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:6,19:25:99:638,0,170
+chr1	147653	.	T	G	1125.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=36.65;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1154,93,0
+chr1	147665	.	C	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;DP=31;Dels=0.00;FS=11.051;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.68;MQ0=0;MQRankSum=2.182;QD=11.86;ReadPosRankSum=-1.741;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:18,13:31:99:396,0,590
+chr1	147671	.	C	T	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;DP=30;Dels=0.00;FS=8.496;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.13;MQ0=0;MQRankSum=-1.517;QD=15.93;ReadPosRankSum=2.099;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:14,16:30:99:506,0,416
+chr1	147698	.	T	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;DP=29;Dels=0.00;FS=11.831;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=58.55;MQ0=0;MQRankSum=-0.240;QD=15.47;ReadPosRankSum=-2.160;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:15,14:29:99:477,0,517
+chr1	147700	.	A	G	1091.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=32.47;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1120,84,0
+chr1	147730	.	T	C	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;DP=38;Dels=0.00;FS=24.449;HaplotypeScore=2.5770;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=1.345;QD=13.02;ReadPosRankSum=1.109;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:22,16:38:99:523,0,753
+chr1	147779	.	C	T	1482.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=28.95;EFF=UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|),UPSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1511,111,0
+chr1	147815	.	G	A	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;DP=38;Dels=0.00;FS=5.625;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=0.779;QD=10.52;ReadPosRankSum=1.129;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGc/aAc|S6N|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:24,13:38:99:428,0,860
+chr1	147816	.	C	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;DP=38;Dels=0.00;FS=5.221;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=0.154;QD=10.44;ReadPosRankSum=1.292;EFF=SYNONYMOUS_CODING(LOW|SILENT|agC/agT|S6|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:25,13:38:99:425,0,850
+chr1	147861	.	G	A	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-2.322;QD=18.06;ReadPosRankSum=-0.782;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcG/tcA|S21|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:19,25:44:99:823,0,602
+chr1	147863	.	G	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-1.540;QD=18.84;ReadPosRankSum=-0.782;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGc/aCc|S22T|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:19,25:44:99:857,0,597
+chr1	147893	.	A	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DP=28;Dels=0.00;FS=12.411;HaplotypeScore=17.4716;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.534;QD=13.31;ReadPosRankSum=1.694;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tAt/tCt|Y32S|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:16,12:28:99:401,0,517
+chr1	147940	.	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;DP=60;Dels=0.00;FS=5.651;HaplotypeScore=4.9890;MLEAC=1;MLEAF=0.500;MQ=51.15;MQ0=1;MQRankSum=2.013;QD=2.28;ReadPosRankSum=0.601;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gaa/Aaa|E48K|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:51,9:60:99:165,0,1548
+chr1	147974	.	G	T	2172.77	.	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=1;QD=32.90;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tGg/tTg|W59L|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2201,172,0
+chr1	147980	.	T	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DP=60;Dels=0.00;FS=2.594;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=53.04;MQ0=1;MQRankSum=-5.013;QD=5.68;ReadPosRankSum=2.921;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tTg/tCg|L61S|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:42,18:60:99:369,0,1413
+chr1	148008	.	T	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;DP=70;Dels=0.00;FS=5.868;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=56.15;MQ0=0;MQRankSum=-4.821;QD=6.14;ReadPosRankSum=0.000;EFF=SYNONYMOUS_CODING(LOW|SILENT|acT/acG|T70|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:51,19:70:99:458,0,1746
+chr1	148023	.	G	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;DP=65;Dels=0.00;FS=8.565;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=0;MQRankSum=-4.083;QD=6.41;ReadPosRankSum=0.082;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtG/gtA|V75|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:48,17:65:99:445,0,1615
+chr1	148028	.	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;DP=60;Dels=0.00;FS=14.560;HaplotypeScore=3.3988;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=-4.165;QD=5.43;ReadPosRankSum=0.768;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tCg/tTg|S77L|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:45,15:60:99:354,0,1522
+chr1	148029	.	G	A	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;DP=57;Dels=0.00;FS=9.963;HaplotypeScore=3.3988;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=-2.445;QD=5.21;ReadPosRankSum=1.708;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcG/tcA|S77|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:43,13:57:99:325,0,1421
+chr1	148050	.	T	C	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=1;MLEAF=0.500;MQ=58.18;MQ0=0;MQRankSum=2.073;QD=10.00;ReadPosRankSum=-0.265;EFF=SYNONYMOUS_CODING(LOW|SILENT|atT/atC|I84|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:41,24:65:99:678,0,1415
+chr1	148062	.	G	A	2262.77	.	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=26.81;EFF=SYNONYMOUS_CODING(LOW|SILENT|agG/agA|R88|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2291,178,0
+chr1	148077	.	T	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;DP=53;Dels=0.00;FS=12.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.62;MQ0=0;MQRankSum=-4.267;QD=7.07;ReadPosRankSum=0.313;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caT/caG|H93Q|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:39,14:53:99:403,0,1389
+chr1	148078	.	C	A	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.438;DP=54;Dels=0.00;FS=12.716;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.64;MQ0=0;MQRankSum=-4.017;QD=6.61;ReadPosRankSum=0.365;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cct/Act|P94T|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:40,14:54:99:385,0,1444
+chr1	148095	.	C	T	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;DP=44;Dels=0.00;FS=14.379;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=-3.117;QD=6.61;ReadPosRankSum=1.003;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcC/gcT|A99|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:33,11:44:99:319,0,1163
+chr1	148104	.	C	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;DP=48;Dels=0.00;FS=16.904;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.38;MQ0=0;MQRankSum=-4.176;QD=7.10;ReadPosRankSum=-0.348;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcC/gcT|A102|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:35,13:48:99:369,0,1201
+chr1	148117	.	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=50;Dels=0.00;FS=18.397;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=0;MQRankSum=-3.965;QD=4.16;ReadPosRankSum=1.152;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tct/Cct|S107P|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:40,10:50:99:236,0,1399
+chr1	148124	.	C	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;DP=49;Dels=0.00;FS=20.451;HaplotypeScore=1.8499;MLEAC=1;MLEAF=0.500;MQ=57.15;MQ0=0;MQRankSum=-4.155;QD=3.73;ReadPosRankSum=0.409;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCt/aTt|T109I|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:39,10:49:99:211,0,1394
+chr1	148128	.	T	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;DP=48;Dels=0.00;FS=20.451;HaplotypeScore=45.3427;MLEAC=1;MLEAF=0.500;MQ=56.97;MQ0=0;MQRankSum=-4.649;QD=3.72;ReadPosRankSum=0.608;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcT/gcC|A110|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:39,9:48:99:207,0,1389
+chr1	148133	.	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=46;Dels=0.00;FS=20.653;HaplotypeScore=118.8295;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=0;MQRankSum=-4.624;QD=3.82;ReadPosRankSum=-0.194;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAc/gGc|D112G|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:37,9:46:99:204,0,1210
+chr1	148165	.	C	G	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;DP=43;Dels=0.00;FS=1.213;HaplotypeScore=4.9810;MLEAC=1;MLEAF=0.500;MQ=56.32;MQ0=0;MQRankSum=1.859;QD=11.99;ReadPosRankSum=-1.096;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ccc/Gcc|P123A|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:25,18:43:99:544,0,806
+chr1	148184	.	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.9827;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=29.22;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAg/aGg|K129R|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1410,111,0
+chr1	148218	.	T	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.57;MQ0=0;MQRankSum=0.826;QD=13.38;ReadPosRankSum=0.216;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcT/tcA|S140|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_147799_148243),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:24,18:42:99:590,0,747
+chr1	148366	.	C	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;DP=46;Dels=0.00;FS=2.594;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=1;MQRankSum=0.742;QD=18.06;ReadPosRankSum=0.811;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:21,25:46:99:859,0,635
+chr1	148435	.	A	C	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;DP=54;Dels=0.00;FS=9.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=0.801;QD=20.33;ReadPosRankSum=-0.361;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:22,32:54:99:1126,0,692
+chr1	148463	.	A	G	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DP=54;Dels=0.00;FS=1.155;HaplotypeScore=28.9952;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-0.199;QD=22.25;ReadPosRankSum=0.507;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:19,35:54:99:1230,0,586
+chr1	148468	.	A	G	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=15.2316;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=0.761;QD=23.46;ReadPosRankSum=0.615;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:18,36:54:99:1295,0,544
+chr1	148595	.	C	T	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=1.341;QD=12.88;ReadPosRankSum=-0.048;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:29,22:51:99:685,0,1002
+chr1	148617	.	G	A	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;DP=50;Dels=0.00;FS=1.142;HaplotypeScore=2.7334;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=1.203;QD=15.00;ReadPosRankSum=-1.901;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:25,25:50:99:778,0,841
+chr1	148704	.	G	C	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=51;Dels=0.00;FS=3.975;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=0.330;QD=17.33;ReadPosRankSum=-0.481;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:24,27:51:99:912,0,798
+chr1	148761	.	A	T	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=0.244;QD=17.66;ReadPosRankSum=0.925;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:31,35:66:99:1194,0,997
+chr1	148794	.	T	C	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;DP=84;Dels=0.00;FS=0.829;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-0.198;QD=18.70;ReadPosRankSum=-0.117;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:37,47:84:99:1599,0,1205
+chr1	148795	.	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;DP=81;Dels=0.00;FS=0.833;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=0.043;QD=14.77;ReadPosRankSum=-0.327;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:44,37:81:99:1225,0,1499
+chr1	148840	.	T	A	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DP=67;Dels=0.00;FS=6.538;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.018;QD=15.13;ReadPosRankSum=0.094;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:36,31:67:99:1042,0,1215
+chr1	148975	.	A	T	1278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;DP=70;Dels=0.00;FS=2.050;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-2.446;QD=18.27;ReadPosRankSum=-0.383;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1307,0,1024
+chr1	148997	.	T	C	2678.77	.	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=25.77;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2707,205,0
+chr1	149029	.	T	C	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;DP=64;Dels=0.00;FS=7.922;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=4;MQRankSum=-3.991;QD=19.23;ReadPosRankSum=0.098;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:24,40:64:99:1259,0,799
+chr1	149049	.	C	T	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DP=53;Dels=0.00;FS=4.125;HaplotypeScore=3.9326;MLEAC=1;MLEAF=0.500;MQ=48.44;MQ0=4;MQRankSum=-3.050;QD=15.88;ReadPosRankSum=0.650;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:28,25:53:99:870,0,827
+chr1	149054	.	T	A	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;DP=53;Dels=0.00;FS=1.097;HaplotypeScore=2.9329;MLEAC=1;MLEAF=0.500;MQ=48.44;MQ0=4;MQRankSum=-3.556;QD=14.32;ReadPosRankSum=1.012;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:30,23:53:99:787,0,898
+chr1	149065	.	C	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=47.38;MQ0=4;MQRankSum=3.705;QD=16.74;ReadPosRankSum=-1.056;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:748,0,583
+chr1	149079	.	T	A	1585.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=35.89;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1614,120,0
+chr1	149083	.	G	A	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=1.535;QD=16.43;ReadPosRankSum=1.595;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:18,19:37:99:636,0,597
+chr1	149099	.	C	T	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DP=40;Dels=0.00;FS=2.794;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=-0.095;QD=14.47;ReadPosRankSum=-0.340;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:22,18:40:99:607,0,754
+chr1	149136	.	A	C	1526.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=32.84;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1555,117,0
+chr1	149156	.	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;DP=52;Dels=0.00;FS=6.760;HaplotypeScore=3.3564;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-0.965;QD=0.90;ReadPosRankSum=-3.566;EFF=SYNONYMOUS_CODING(LOW|SILENT|agG/agA|R158|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_149142_149360),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:45,7:52:75:75,0,1569
+chr1	149170	.	A	G	20.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;DP=58;Dels=0.00;FS=6.984;HaplotypeScore=11.3843;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-0.167;QD=0.36;ReadPosRankSum=-0.215;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAg/gGg|E163G|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_149142_149360),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:51,7:58:49:49,0,1750
+chr1	149174	.	A	G	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;DP=60;Dels=0.00;FS=14.447;HaplotypeScore=10.5956;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=0.030;QD=13.23;ReadPosRankSum=0.195;EFF=SYNONYMOUS_CODING(LOW|SILENT|ccA/ccG|P164|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_149142_149360),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:35,25:60:99:822,0,1037
+chr1	149224	.	T	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;DP=47;Dels=0.00;FS=19.146;HaplotypeScore=12.8749;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=1.421;QD=14.51;ReadPosRankSum=-0.769;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTc/aCc|I181T|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_149142_149360),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:20,21:47:99:710,0,673
+chr1	149225	.	C	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;DP=47;Dels=0.00;FS=6.565;HaplotypeScore=12.8749;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=0.526;QD=1.55;ReadPosRankSum=1.164;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atC/atG|I181M|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_149142_149360),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:41,6:47:99:101,0,1493
+chr1	149237	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;DP=43;Dels=0.00;FS=4.406;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=0.284;QD=0.81;ReadPosRankSum=1.118;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctG/ctA|L185|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_149142_149360),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:38,5:43:63:63,0,1390
+chr1	149253	.	C	T	1318.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.87;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cca/Tca|P191S|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_149142_149360),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1347,105,0
+chr1	149279	.	G	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;DP=34;Dels=0.00;FS=8.198;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.052;QD=14.85;ReadPosRankSum=0.155;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcG/tcA|S199|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_149142_149360),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:18,16:34:99:533,0,627
+chr1	149379	.	T	C	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;DP=49;Dels=0.00;FS=1.117;HaplotypeScore=2.8936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-2.187;QD=20.28;ReadPosRankSum=0.193;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:20,29:49:99:1022,0,551
+chr1	149421	.	T	C	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;DP=43;Dels=0.00;FS=1.218;HaplotypeScore=3.8299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.086;QD=13.09;ReadPosRankSum=0.037;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:24,19:43:99:591,0,836
+chr1	149472	.	A	G	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.074;QD=12.76;ReadPosRankSum=-0.015;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:22,16:38:99:513,0,690
+chr1	149514	.	C	T	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.243;QD=12.10;ReadPosRankSum=1.444;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:22,14:36:99:464,0,734
+chr1	149653	.	G	T	579.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=1;QD=28.93;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:45:608,45,0
+chr1	149713	.	T	G	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;DP=42;Dels=0.00;FS=1.480;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=0.750;QD=12.83;ReadPosRankSum=0.496;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:24,18:42:99:567,0,822
+chr1	149716	.	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;DP=44;Dels=0.00;FS=3.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-0.177;QD=14.22;ReadPosRankSum=-0.365;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:654,0,836
+chr1	149737	.	A	G	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.238;QD=16.15;ReadPosRankSum=1.192;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:23,22:45:99:755,0,792
+chr1	149745	.	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.697;QD=13.88;ReadPosRankSum=1.519;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:25,20:45:99:653,0,850
+chr1	149746	.	A	G	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.420;QD=13.21;ReadPosRankSum=1.732;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:27,20:47:99:649,0,910
+chr1	149780	.	T	C	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;DP=33;Dels=0.00;FS=3.967;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.998;QD=11.84;ReadPosRankSum=-1.803;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00130|mRNA||GSCOCT00012422001|)	GT:AD:DP:GQ:PL	0/1:19,13:33:99:419,0,669
+chr1	149946	.	T	C	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;DP=53;Dels=0.00;FS=1.147;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=-1.482;QD=12.69;ReadPosRankSum=0.409;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:32,21:53:99:701,0,1128
+chr1	149947	.	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=27.53;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2113,157,0
+chr1	149959	.	T	G	1968.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=31.52;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1997,150,0
+chr1	149962	.	T	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=50;Dels=0.00;FS=1.172;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.553;QD=10.14;ReadPosRankSum=-0.471;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:33,17:50:99:535,0,1193
+chr1	150069	.	A	G	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=-1.083;QD=17.49;ReadPosRankSum=0.217;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ata/Gta|I248V|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_150006_150117)	GT:AD:DP:GQ:PL	0/1:19,21:40:99:728,0,642
+chr1	150083	.	G	A	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;DP=42;Dels=0.00;FS=2.885;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=2.679;QD=14.76;ReadPosRankSum=0.859;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtG/gtA|V252|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_150006_150117)	GT:AD:DP:GQ:PL	0/1:23,19:42:99:648,0,802
+chr1	150232	.	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.48;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2090,159,0
+chr1	150236	.	G	A	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=55;Dels=0.00;FS=5.672;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-0.713;QD=12.12;ReadPosRankSum=0.850;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:33,22:55:99:695,0,1131
+chr1	150249	.	C	G	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=55;Dels=0.00;FS=3.715;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=0.844;QD=13.76;ReadPosRankSum=2.150;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:30,24:55:99:785,0,958
+chr1	150265	.	C	T	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;DP=57;Dels=0.00;FS=2.302;HaplotypeScore=2.8318;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=-1.049;QD=11.47;ReadPosRankSum=2.072;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:34,22:57:99:682,0,1070
+chr1	150297	.	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=28.40;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2318,175,0
+chr1	150375	.	T	G	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;DP=48;Dels=0.00;FS=14.013;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=-0.610;QD=14.87;ReadPosRankSum=0.735;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,22:48:99:742,0,881
+chr1	150494	.	A	G	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DP=38;Dels=0.00;FS=1.849;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=0.182;QD=25.63;ReadPosRankSum=1.541;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:10,28:38:99:1002,0,268
+chr1	150499	.	C	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;DP=37;Dels=0.00;FS=1.885;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=58.20;MQ0=1;MQRankSum=-0.698;QD=5.89;ReadPosRankSum=-1.378;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,10:37:99:246,0,955
+chr1	150581	.	C	T	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;DP=28;Dels=0.00;FS=7.346;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.220;QD=6.46;ReadPosRankSum=-0.318;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,7:28:99:209,0,766
+chr1	150588	.	A	T	1273.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.05;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1302,96,0
+chr1	150606	.	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.81;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1266,93,0
+chr1	150717	.	T	A,G	1153.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;QD=32.04;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/2:0,16,20:36:99:1346,748,699,599,0,539
+chr1	150752	.	G	A	1457.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.89;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1486,114,0
+chr1	150838	.	A	G	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.568;DP=52;Dels=0.00;FS=6.106;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.029;QD=10.65;ReadPosRankSum=1.741;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:34,18:52:99:582,0,1173
+chr1	150929	.	G	A	2230.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2259,172,0
+chr1	150953	.	C	A	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DP=60;Dels=0.00;FS=31.975;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.044;QD=16.33;ReadPosRankSum=-0.680;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:29,31:60:99:1008,0,1004
+chr1	150957	.	T	C	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;DP=61;Dels=0.00;FS=31.108;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.888;QD=17.03;ReadPosRankSum=-0.744;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:29,32:61:99:1067,0,979
+chr1	151031	.	T	A	2189.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=33.38;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2218,166,0
+chr1	151074	.	A	T	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;DP=49;Dels=0.00;FS=2.463;HaplotypeScore=1.9853;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-0.650;QD=16.10;ReadPosRankSum=-0.550;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:24,25:49:99:817,0,821
+chr1	151153	.	T	A	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DP=58;Dels=0.00;FS=7.584;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=0.355;QD=13.15;ReadPosRankSum=-0.087;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:34,24:58:99:791,0,1148
+chr1	151277	.	G	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;DP=35;Dels=0.00;FS=8.547;HaplotypeScore=3.9810;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-0.126;QD=9.39;ReadPosRankSum=0.811;EFF=SYNONYMOUS_CODING(LOW|SILENT|ccG/ccC|P284|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_151216_151324)	GT:AD:DP:GQ:PL	0/1:22,12:35:99:357,0,750
+chr1	151351	.	A	G	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;DP=53;Dels=0.00;FS=5.783;HaplotypeScore=5.9768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.771;QD=21.17;ReadPosRankSum=-0.046;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:20,33:53:99:1150,0,663
+chr1	151361	.	A	G,T	1601.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;QD=32.03;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/2:0,26,24:50:99:1836,882,804,954,0,882
+chr1	151391	.	T	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DP=43;Dels=0.00;FS=1.286;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.140;QD=10.46;ReadPosRankSum=-0.675;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,15:43:99:478,0,965
+chr1	151489	.	T	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=53;Dels=0.00;FS=1.065;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.773;QD=17.41;ReadPosRankSum=-0.401;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,28:53:99:951,0,823
+chr1	151542	.	C	T	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;DP=63;Dels=0.00;FS=30.147;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.313;QD=17.04;ReadPosRankSum=-0.351;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,32:63:99:1102,0,1065
+chr1	151610	.	C	A	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;DP=59;Dels=0.00;FS=9.684;HaplotypeScore=2.9991;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.218;QD=14.40;ReadPosRankSum=1.356;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,27:59:99:878,0,1066
+chr1	151618	.	T	C	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DP=61;Dels=0.00;FS=5.239;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=0.094;QD=16.44;ReadPosRankSum=0.815;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:30,31:61:99:1031,0,1031
+chr1	151695	.	T	G	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;DP=51;Dels=0.00;FS=1.161;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-1.688;QD=20.33;ReadPosRankSum=2.209;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:20,31:51:99:1065,0,641
+chr1	151785	.	A	G	2449.77	.	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.96;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2478,184,0
+chr1	151923	.	T	C	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DP=42;Dels=0.00;FS=6.816;HaplotypeScore=1.8662;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-0.225;QD=12.64;ReadPosRankSum=-0.225;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:24,17:42:99:559,0,782
+chr1	151972	.	A	G	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=0.876;QD=17.48;ReadPosRankSum=-0.614;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:19,22:41:99:745,0,597
+chr1	152191	.	C	G	1805.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9945;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=30.22;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1834,147,0
+chr1	152290	.	A	G	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DP=72;Dels=0.00;FS=4.729;HaplotypeScore=2.7880;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-1.788;QD=16.12;ReadPosRankSum=1.604;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:36,35:72:99:1189,0,1208
+chr1	152381	.	C	A	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-0.235;QD=10.50;ReadPosRankSum=-0.254;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,19:54:99:595,0,1229
+chr1	152382	.	C	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;DP=53;Dels=0.00;FS=1.147;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=0.873;QD=10.07;ReadPosRankSum=-0.009;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,18:53:99:562,0,1258
+chr1	152486	.	A	G	2355.77	.	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.88;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2384,181,0
+chr1	152515	.	T	A	2726.77	.	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.81;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2755,208,0
+chr1	152581	.	C	A	2660.77	.	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.15;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2689,202,0
+chr1	152658	.	A	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;DP=65;Dels=0.00;FS=3.385;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.165;QD=14.69;ReadPosRankSum=-0.574;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:36,29:65:99:983,0,1258
+chr1	152684	.	C	G	2666.77	.	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.01;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2695,202,0
+chr1	152720	.	A	G	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.563;QD=18.84;ReadPosRankSum=0.826;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,36:63:99:1215,0,861
+chr1	152741	.	G	T	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;DP=61;Dels=0.00;FS=3.616;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=1;MQRankSum=0.365;QD=13.05;ReadPosRankSum=-1.096;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,26:61:99:824,0,1171
+chr1	152749	.	T	C	1986.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=1;MQRankSum=-0.360;QD=25.29;ReadPosRankSum=0.033;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:1,53:54:99:2015,153,0
+chr1	152752	.	G	C	2005.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=1;QD=30.47;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2034,153,0
+chr1	152755	.	T	C	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;DP=55;Dels=0.00;FS=3.860;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=55.24;MQ0=1;MQRankSum=2.481;QD=17.30;ReadPosRankSum=1.370;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,30:55:99:980,0,789
+chr1	152892	.	T	C	96.28	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.44;MQ0=4;QD=10.70;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:9:124,9,0
+chr1	152911	.	G	A	137.03	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.54;MQ0=4;QD=12.46;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:12:165,12,0
+chr1	152938	.	C	T	136.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=4;MQRankSum=1.683;QD=10.46;ReadPosRankSum=1.001;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:6,7:13:12:164,12,0
+chr1	153166	.	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.7547;MLEAC=1;MLEAF=0.500;MQ=18.57;MQ0=5;MQRankSum=1.137;QD=2.93;ReadPosRankSum=1.137;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:20,10:30:92:116,0,92
+chr1	153200	.	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;DP=33;Dels=0.00;FS=3.979;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=15.76;MQ0=8;MQRankSum=0.670;QD=1.11;ReadPosRankSum=1.136;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,10:33:65:65,0,140
+chr1	153324	.	A	G	148.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.081;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.9300;MLEAC=1;MLEAF=0.500;MQ=13.59;MQ0=11;MQRankSum=2.944;QD=4.24;ReadPosRankSum=2.348;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:9,25:35:21:200,21,0
+chr1	153381	.	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;DP=68;Dels=0.00;FS=15.911;HaplotypeScore=21.0001;MLEAC=1;MLEAF=0.500;MQ=12.66;MQ0=25;MQRankSum=0.041;QD=0.61;ReadPosRankSum=0.528;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:55,13:68:70:70,0,248
+chr1	153430	.	T	C	161.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.369;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=10.12;MQ0=25;MQRankSum=0.822;QD=3.68;ReadPosRankSum=-1.734;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:10,34:44:24:190,24,0
+chr1	153445	.	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.0452;MLEAC=1;MLEAF=0.500;MQ=15.14;MQ0=40;MQRankSum=-0.451;QD=0.83;ReadPosRankSum=0.239;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:55,12:67:84:84,0,310
+chr1	153446	.	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.0452;MLEAC=1;MLEAF=0.500;MQ=15.14;MQ0=40;MQRankSum=1.877;QD=0.65;ReadPosRankSum=-1.604;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:59,8:67:72:72,0,323
+chr1	153476	.	C	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=14.6632;MLEAC=1;MLEAF=0.500;MQ=16.01;MQ0=39;MQRankSum=1.279;QD=5.89;ReadPosRankSum=0.316;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:41,35:76:79:476,0,79
+chr1	153481	.	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DP=79;Dels=0.00;FS=2.335;HaplotypeScore=14.5114;MLEAC=1;MLEAF=0.500;MQ=15.99;MQ0=39;MQRankSum=0.178;QD=0.62;ReadPosRankSum=-0.285;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:67,12:79:77:77,0,497
+chr1	153516	.	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.4714;MLEAC=1;MLEAF=0.500;MQ=16.93;MQ0=40;MQRankSum=1.294;QD=0.37;ReadPosRankSum=0.222;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:75,8:86:60:60,0,573
+chr1	153518	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.4714;MLEAC=1;MLEAF=0.500;MQ=17.03;MQ0=39;MQRankSum=1.715;QD=0.41;ReadPosRankSum=-1.174;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:72,12:84:63:63,0,569
+chr1	153554	.	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;DP=51;Dels=0.00;FS=5.129;HaplotypeScore=5.7732;MLEAC=1;MLEAF=0.500;MQ=14.69;MQ0=20;MQRankSum=0.275;QD=1.41;ReadPosRankSum=-1.078;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,19:51:99:100,0,209
+chr1	153590	.	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8158;MLEAC=1;MLEAF=0.500;MQ=13.34;MQ0=22;MQRankSum=0.750;QD=1.69;ReadPosRankSum=0.824;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:33,41:74:99:153,0,172
+chr1	153593	.	T	A	267.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;DP=73;Dels=0.00;FS=12.430;HaplotypeScore=16.3870;MLEAC=1;MLEAF=0.500;MQ=13.50;MQ0=20;MQRankSum=-2.002;QD=3.67;ReadPosRankSum=0.471;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:4,65:73:23:296,0,23
+chr1	153603	.	C	T	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;DP=131;Dels=0.00;FS=1.943;HaplotypeScore=7.3720;MLEAC=1;MLEAF=0.500;MQ=19.19;MQ0=28;MQRankSum=1.316;QD=3.97;ReadPosRankSum=-2.546;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:83,47:131:99:548,0,748
+chr1	153634	.	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;DP=250;Dels=0.00;FS=8.821;HaplotypeScore=55.7961;MLEAC=1;MLEAF=0.500;MQ=21.90;MQ0=51;MQRankSum=-0.113;QD=0.76;ReadPosRankSum=2.098;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:217,33:250:99:218,0,3652
+chr1	153635	.	A	T	2861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.523;DP=250;Dels=0.00;FS=76.787;HaplotypeScore=57.8078;MLEAC=1;MLEAF=0.500;MQ=22.51;MQ0=49;MQRankSum=3.056;QD=11.45;ReadPosRankSum=2.693;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:101,149:250:99:2890,0,1044
+chr1	153682	.	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;DP=249;Dels=0.00;FS=4.305;HaplotypeScore=56.1815;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=45;MQRankSum=2.445;QD=0.69;ReadPosRankSum=1.423;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:227,20:249:99:200,0,3583
+chr1	153721	.	C	A	13.95	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;DP=246;Dels=0.00;FS=1.847;HaplotypeScore=63.1880;MLEAC=1;MLEAF=0.500;MQ=23.87;MQ0=46;MQRankSum=3.002;QD=0.06;ReadPosRankSum=-2.172;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:227,14:246:42:42,0,3329
+chr1	153722	.	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;DP=245;Dels=0.00;FS=1.279;HaplotypeScore=60.2739;MLEAC=1;MLEAF=0.500;MQ=23.89;MQ0=46;MQRankSum=2.339;QD=0.86;ReadPosRankSum=1.176;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:218,26:245:99:239,0,3144
+chr1	153752	.	T	C	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DP=115;Dels=0.00;FS=5.126;HaplotypeScore=12.2854;MLEAC=1;MLEAF=0.500;MQ=17.73;MQ0=25;MQRankSum=-2.081;QD=0.17;ReadPosRankSum=-1.203;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:75,40:115:48:48,0,900
+chr1	153768	.	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;DP=106;Dels=0.00;FS=2.104;HaplotypeScore=3.8507;MLEAC=1;MLEAF=0.500;MQ=16.93;MQ0=30;MQRankSum=-0.643;QD=1.08;ReadPosRankSum=0.595;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:72,30:106:99:143,0,668
+chr1	153796	.	G	A	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=23.0694;MLEAC=1;MLEAF=0.500;MQ=19.06;MQ0=44;MQRankSum=4.401;QD=9.31;ReadPosRankSum=0.585;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:85,120:209:99:1974,0,350
+chr1	153918	.	G	A	20.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DP=231;Dels=0.00;FS=102.092;HaplotypeScore=38.2429;MLEAC=1;MLEAF=0.500;MQ=21.52;MQ0=56;MQRankSum=1.367;QD=0.09;ReadPosRankSum=2.636;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:212,19:231:49:49,0,2890
+chr1	153928	.	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;DP=177;Dels=0.00;FS=70.822;HaplotypeScore=49.5301;MLEAC=1;MLEAF=0.500;MQ=19.80;MQ0=52;MQRankSum=2.469;QD=0.32;ReadPosRankSum=1.151;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:165,11:177:84:84,0,1870
+chr1	153931	.	G	C	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DP=171;Dels=0.00;FS=63.103;HaplotypeScore=41.3083;MLEAC=1;MLEAF=0.500;MQ=19.93;MQ0=50;MQRankSum=3.349;QD=7.01;ReadPosRankSum=-0.504;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:103,67:171:99:1227,0,745
+chr1	153947	.	A	G	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;DP=117;Dels=0.00;FS=16.425;HaplotypeScore=22.7832;MLEAC=1;MLEAF=0.500;MQ=19.47;MQ0=38;MQRankSum=2.093;QD=2.57;ReadPosRankSum=-1.715;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:97,20:117:99:329,0,946
+chr1	153962	.	T	C	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;DP=76;Dels=0.00;FS=28.843;HaplotypeScore=13.6296;MLEAC=1;MLEAF=0.500;MQ=17.52;MQ0=25;MQRankSum=3.039;QD=5.14;ReadPosRankSum=-2.479;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:54,22:76:99:419,0,279
+chr1	153982	.	C	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;DP=27;Dels=0.00;FS=10.000;HaplotypeScore=2.6670;MLEAC=1;MLEAF=0.500;MQ=11.06;MQ0=11;MQRankSum=2.285;QD=1.36;ReadPosRankSum=2.415;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,5:27:29:65,0,29
+chr1	154000	.	A	C	52.28	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.44;MQ0=1;QD=8.71;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:9:80,9,0
+chr1	154002	.	G	A	52.28	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.74;MQ0=1;QD=10.46;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:9:80,9,0
+chr1	154038	.	G	A	30.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.18;MQ0=1;MQRankSum=0.736;QD=7.69;ReadPosRankSum=-0.736;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:1,3:4:6:58,6,0
+chr1	154066	.	G	A	262.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=2;QD=23.89;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:1,10:11:27:291,27,0
+chr1	154073	.	A	T	236.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=2;QD=21.53;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,10:11:24:265,24,0
+chr1	154089	.	C	T	246.1	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=27.14;MQ0=4;MQRankSum=2.003;QD=16.41;ReadPosRankSum=2.003;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:5,10:15:11:274,0,11
+chr1	154114	.	T	C	272.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.778;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=4;MQRankSum=2.024;QD=15.13;ReadPosRankSum=0.934;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:5,13:18:8:300,8,0
+chr1	154133	.	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;DP=35;Dels=0.00;FS=9.558;HaplotypeScore=3.5584;MLEAC=1;MLEAF=0.500;MQ=18.65;MQ0=14;MQRankSum=2.353;QD=3.25;ReadPosRankSum=1.445;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,7:35:99:142,0,207
+chr1	154140	.	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;DP=45;Dels=0.00;FS=11.635;HaplotypeScore=12.4237;MLEAC=1;MLEAF=0.500;MQ=18.93;MQ0=14;MQRankSum=2.372;QD=0.88;ReadPosRankSum=0.501;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:42,3:45:68:68,0,368
+chr1	154141	.	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DP=45;Dels=0.00;FS=11.635;HaplotypeScore=12.4237;MLEAC=1;MLEAF=0.500;MQ=18.93;MQ0=14;MQRankSum=2.238;QD=0.88;ReadPosRankSum=0.167;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:42,3:45:68:68,0,372
+chr1	154150	.	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DP=52;Dels=0.00;FS=11.840;HaplotypeScore=12.4214;MLEAC=1;MLEAF=0.500;MQ=19.66;MQ0=15;MQRankSum=1.795;QD=3.11;ReadPosRankSum=-1.146;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:41,11:52:99:190,0,332
+chr1	154162	.	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;DP=55;Dels=0.00;FS=11.710;HaplotypeScore=10.1969;MLEAC=1;MLEAF=0.500;MQ=18.76;MQ0=15;MQRankSum=2.642;QD=4.32;ReadPosRankSum=-0.664;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:43,12:55:99:266,0,265
+chr1	154178	.	A	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;DP=57;Dels=0.00;FS=12.518;HaplotypeScore=35.4325;MLEAC=1;MLEAF=0.500;MQ=19.06;MQ0=14;MQRankSum=0.047;QD=0.65;ReadPosRankSum=0.421;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:49,8:57:65:65,0,554
+chr1	154185	.	G	A	15.88	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=32.5155;MLEAC=1;MLEAF=0.500;MQ=19.28;MQ0=13;MQRankSum=-1.073;QD=0.29;ReadPosRankSum=-0.593;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:47,8:55:44:44,0,542
+chr1	154186	.	C	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DP=56;Dels=0.00;FS=6.576;HaplotypeScore=25.1706;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=13;MQRankSum=2.199;QD=5.50;ReadPosRankSum=1.671;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:39,16:56:99:336,0,269
+chr1	154211	.	G	T	23.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=20.8680;MLEAC=1;MLEAF=0.500;MQ=19.61;MQ0=12;MQRankSum=-1.269;QD=0.41;ReadPosRankSum=1.843;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:44,10:58:52:52,0,633
+chr1	154212	.	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;DP=58;Dels=0.00;FS=23.517;HaplotypeScore=19.0376;MLEAC=1;MLEAF=0.500;MQ=19.61;MQ0=12;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.855;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:48,10:58:73:73,0,611
+chr1	154215	.	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=11.7095;MLEAC=1;MLEAF=0.500;MQ=19.47;MQ0=12;MQRankSum=-0.934;QD=0.60;ReadPosRankSum=2.084;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:45,10:55:61:61,0,555
+chr1	154233	.	T	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.6866;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=0;MQRankSum=-1.708;QD=3.52;ReadPosRankSum=-1.604;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:18,16:34:99:148,0,338
+chr1	154250	.	A	G	353.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.8562;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=0;QD=20.81;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:45:382,45,0
+chr1	154253	.	T	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.93;MQ0=0;MQRankSum=0.174;QD=6.85;ReadPosRankSum=0.637;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:8,7:15:99:131,0,128
+chr1	154292	.	T	C	33.74	.	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.69;MQ0=3;QD=4.82;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:2,5:7:6:61,6,0
+chr1	154334	.	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;DP=29;Dels=0.00;FS=9.558;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=4;MQRankSum=-0.028;QD=4.34;ReadPosRankSum=-1.470;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:19,10:29:99:154,0,227
+chr1	154358	.	C	A	12.05	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DP=47;Dels=0.00;FS=6.284;HaplotypeScore=26.6661;MLEAC=1;MLEAF=0.500;MQ=23.42;MQ0=3;MQRankSum=-1.018;QD=0.26;ReadPosRankSum=-0.844;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:38,9:47:40:40,0,642
+chr1	154359	.	T	G	544.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.915;DP=45;Dels=0.00;FS=12.648;HaplotypeScore=26.6661;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=3;MQRankSum=0.678;QD=12.09;ReadPosRankSum=0.265;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:4,34:45:24:632,24,0
+chr1	154370	.	C	A	21.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;DP=51;Dels=0.00;FS=8.661;HaplotypeScore=31.0665;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=4;MQRankSum=-2.073;QD=0.43;ReadPosRankSum=1.470;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:38,13:51:50:50,0,714
+chr1	154426	.	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;DP=49;Dels=0.00;FS=2.566;HaplotypeScore=5.9227;MLEAC=1;MLEAF=0.500;MQ=20.19;MQ0=9;MQRankSum=-0.765;QD=0.85;ReadPosRankSum=-0.359;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:39,10:49:70:70,0,505
+chr1	154501	.	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=30;Dels=0.00;FS=2.793;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.43;MQ0=7;MQRankSum=2.328;QD=1.86;ReadPosRankSum=-0.411;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,3:30:84:84,0,237
+chr1	154559	.	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;DP=30;Dels=0.00;FS=8.741;HaplotypeScore=6.7678;MLEAC=1;MLEAF=0.500;MQ=21.74;MQ0=1;MQRankSum=1.761;QD=2.36;ReadPosRankSum=0.953;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,5:30:99:99,0,279
+chr1	154589	.	G	A	67.03	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.06;MQ0=1;QD=7.45;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:12:95,12,0
+chr1	154697	.	A	G	47.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=0;QD=15.76;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:9:75,9,0
+chr1	154715	.	A	G	15.88	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=0.406;QD=2.27;ReadPosRankSum=-0.406;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:3,3:7:44:44,0,65
+chr1	154731	.	T	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=3.8976;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=0;MQRankSum=1.214;QD=3.78;ReadPosRankSum=-1.214;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:7,3:10:66:66,0,111
+chr1	154741	.	G	A	21.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.8993;MLEAC=1;MLEAF=0.500;MQ=21.34;MQ0=0;MQRankSum=-1.309;QD=1.82;ReadPosRankSum=0.135;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:7,5:12:50:50,0,124
+chr1	154746	.	C	T	193.78	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=11.7238;MLEAC=2;MLEAF=1.00;MQ=21.34;MQ0=0;QD=16.15;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:24:222,24,0
+chr1	154748	.	G	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=11.7238;MLEAC=1;MLEAF=0.500;MQ=21.34;MQ0=0;MQRankSum=1.664;QD=3.40;ReadPosRankSum=0.000;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:9,3:12:69:69,0,77
+chr1	154754	.	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=7.8245;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=0;MQRankSum=1.246;QD=2.34;ReadPosRankSum=0.000;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:11,3:14:61:61,0,161
+chr1	154802	.	G	A	95.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DP=13;Dels=0.00;FS=2.533;HaplotypeScore=2.9205;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=1;MQRankSum=2.367;QD=7.38;ReadPosRankSum=0.135;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:6,7:13:5:123,0,5
+chr1	154809	.	G	T	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.9205;MLEAC=1;MLEAF=0.500;MQ=18.22;MQ0=1;MQRankSum=1.296;QD=1.24;ReadPosRankSum=-1.532;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:10,2:12:43:43,0,89
+chr1	154987	.	T	C	21.77	LowQual	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=9.62;MQ0=4;MQRankSum=0.751;QD=1.67;ReadPosRankSum=0.751;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:1,12:13:6:49,6,0
+chr1	155087	.	G	A	13.97	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.76;MQ0=18;MQRankSum=-0.736;QD=0.67;ReadPosRankSum=0.736;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:3,18:21:23:42,0,23
+chr1	155148	.	C	T	12.99	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;DP=98;Dels=0.00;FS=2.718;HaplotypeScore=13.7215;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=36;MQRankSum=0.569;QD=0.13;ReadPosRankSum=-1.756;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:89,8:98:41:41,0,1299
+chr1	155229	.	G	A	480.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.42;MQ0=12;QD=10.93;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:51:509,51,0
+chr1	155280	.	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.9766;MLEAC=1;MLEAF=0.500;MQ=30.43;MQ0=12;MQRankSum=3.514;QD=1.38;ReadPosRankSum=-1.410;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:118,13:131:99:209,0,2278
+chr1	155283	.	G	A	11.12	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DP=138;Dels=0.00;FS=1.657;HaplotypeScore=13.9302;MLEAC=1;MLEAF=0.500;MQ=30.63;MQ0=13;MQRankSum=-1.295;QD=0.08;ReadPosRankSum=-0.289;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:125,13:138:39:39,0,2616
+chr1	155314	.	T	C	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;DP=180;Dels=0.00;FS=0.919;HaplotypeScore=9.2358;MLEAC=1;MLEAF=0.500;MQ=31.00;MQ0=20;MQRankSum=-4.581;QD=16.35;ReadPosRankSum=1.718;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,153:180:99:2971,0,552
+chr1	155368	.	C	T	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DP=116;Dels=0.00;FS=10.244;HaplotypeScore=19.2230;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=28;MQRankSum=-3.527;QD=10.31;ReadPosRankSum=-0.904;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,89:116:99:1224,0,527
+chr1	155372	.	G	A	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;DP=110;Dels=0.00;FS=21.794;HaplotypeScore=22.7736;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=28;MQRankSum=-2.154;QD=5.63;ReadPosRankSum=-1.004;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:54,56:110:99:648,0,967
+chr1	155396	.	T	C	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=11.0107;MLEAC=1;MLEAF=0.500;MQ=20.74;MQ0=18;MQRankSum=0.787;QD=6.88;ReadPosRankSum=-2.546;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:18,42:60:99:441,0,159
+chr1	155402	.	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.238;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=14.3324;MLEAC=1;MLEAF=0.500;MQ=18.93;MQ0=15;MQRankSum=0.120;QD=0.70;ReadPosRankSum=1.919;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:44,7:51:64:64,0,412
+chr1	155404	.	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;DP=50;Dels=0.00;FS=2.315;HaplotypeScore=14.9975;MLEAC=1;MLEAF=0.500;MQ=18.26;MQ0=14;MQRankSum=-0.535;QD=2.86;ReadPosRankSum=0.049;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,15:50:99:171,0,293
+chr1	155489	.	G	A	2696.77	.	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=54.3672;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=15;QD=18.60;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,143:145:99:2725,270,0
+chr1	155496	.	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;DP=159;Dels=0.00;FS=16.800;HaplotypeScore=104.1353;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=19;MQRankSum=4.281;QD=1.63;ReadPosRankSum=-1.263;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:142,17:159:99:287,0,2754
+chr1	155542	.	G	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;DP=109;Dels=0.00;FS=13.436;HaplotypeScore=10.2277;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=23;MQRankSum=3.323;QD=2.63;ReadPosRankSum=1.718;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:93,16:109:99:315,0,1464
+chr1	155548	.	C	G	18.82	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=19.0733;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=22;MQRankSum=1.496;QD=0.18;ReadPosRankSum=0.594;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:92,9:104:47:47,0,1624
+chr1	155558	.	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.354;DP=83;Dels=0.00;FS=2.807;HaplotypeScore=16.4098;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=22;MQRankSum=-3.424;QD=6.50;ReadPosRankSum=-1.063;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,48:83:99:568,0,598
+chr1	155561	.	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;DP=74;Dels=0.00;FS=6.505;HaplotypeScore=10.4277;MLEAC=1;MLEAF=0.500;MQ=24.10;MQ0=19;MQRankSum=3.377;QD=3.31;ReadPosRankSum=0.558;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:63,11:74:99:273,0,780
+chr1	155586	.	T	A	23.79	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.4598;MLEAC=1;MLEAF=0.500;MQ=17.41;MQ0=15;MQRankSum=1.659;QD=0.72;ReadPosRankSum=-0.829;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:30,3:33:52:52,0,180
+chr1	155593	.	G	A	101.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.635;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=13.93;MQ0=11;MQRankSum=0.529;QD=4.39;ReadPosRankSum=-1.134;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:10,13:23:12:129,12,0
+chr1	155655	.	A	G	941.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.704;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.7914;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=4;MQRankSum=1.320;QD=18.11;ReadPosRankSum=-1.065;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:4,48:52:74:970,74,0
+chr1	155704	.	T	C	886.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=23.78;MQ0=5;QD=18.47;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,48:48:87:915,87,0
+chr1	155711	.	T	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;DP=48;Dels=0.00;FS=10.017;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=5;MQRankSum=-2.049;QD=6.66;ReadPosRankSum=2.024;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,27:48:99:348,0,395
+chr1	155748	.	G	T	107.9	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.97;MQ0=2;QD=6.74;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:15:136,15,0
+chr1	155814	.	G	A	37.28	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.84;MQ0=1;QD=6.21;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:9:65,9,0
+chr1	155851	.	A	T	60.03	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.42;MQ0=4;QD=5.46;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:12:88,12,0
+chr1	155852	.	C	T	60.03	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.93;MQ0=5;QD=5.00;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:1,11:12:12:88,12,0
+chr1	155921	.	C	T	563.77	.	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.8662;MLEAC=2;MLEAF=1.00;MQ=13.15;MQ0=40;QD=6.96;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,81:81:69:592,69,0
+chr1	156028	.	T	C	2144.77	.	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.6927;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=19;QD=16.76;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:3,124:128:99:2173,231,0
+chr1	156056	.	G	A	1257.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=18.35;MQ0=26;MQRankSum=0.191;QD=12.97;ReadPosRankSum=0.052;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:12,85:97:99:1286,109,0
+chr1	156246	.	G	A	1190.77	.	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=20.38;MQ0=6;QD=15.27;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1219,129,0
+chr1	156279	.	C	A	10.9	LowQual	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.91;MQ0=4;QD=1.09;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:3:37,3,0
+chr1	156526	.	A	G	48.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
+chr1	156547	.	A	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DP=56;Dels=0.00;FS=5.379;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=1;MQRankSum=0.887;QD=14.50;ReadPosRankSum=1.631;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,25:56:99:840,0,999
+chr1	156554	.	T	G	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.004;DP=67;Dels=0.00;FS=4.974;HaplotypeScore=1.7313;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=1;MQRankSum=-1.187;QD=13.74;ReadPosRankSum=2.549;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:39,28:67:99:949,0,1225
+chr1	156595	.	T	C	2518.77	.	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=29.54;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2547,190,0
+chr1	156606	.	A	C	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DP=67;Dels=0.00;FS=6.694;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=0.388;QD=20.16;ReadPosRankSum=2.689;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,39:67:99:1379,0,939
+chr1	156782	.	C	T	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DP=67;Dels=0.00;FS=3.401;HaplotypeScore=3.7879;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=1.087;QD=13.65;ReadPosRankSum=-1.036;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:39,28:67:99:943,0,1345
+chr1	156846	.	T	A	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DP=63;Dels=0.00;FS=3.924;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=2;MQRankSum=0.166;QD=16.06;ReadPosRankSum=2.460;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:31,32:63:99:1040,0,959
+chr1	156855	.	T	C	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;DP=65;Dels=0.00;FS=9.722;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=2;MQRankSum=-0.848;QD=17.73;ReadPosRankSum=1.937;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:30,35:65:99:1181,0,930
+chr1	156873	.	C	A	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;DP=54;Dels=0.00;FS=4.462;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=2;MQRankSum=-0.709;QD=8.16;ReadPosRankSum=0.210;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,18:54:99:469,0,1228
+chr1	156909	.	G	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DP=59;Dels=0.00;FS=5.572;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=56.17;MQ0=4;MQRankSum=0.042;QD=13.79;ReadPosRankSum=-0.951;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:29,30:59:99:842,0,823
+chr1	156944	.	G	A	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=65;Dels=0.00;FS=0.962;HaplotypeScore=1.8316;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=2;MQRankSum=-0.243;QD=18.70;ReadPosRankSum=1.160;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1244,0,895
+chr1	157008	.	C	T	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;DP=79;Dels=0.00;FS=7.743;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=1.211;QD=15.97;ReadPosRankSum=-0.240;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:40,39:79:99:1290,0,1323
+chr1	157051	.	C	T	2830.77	.	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=28.67;EFF=SYNONYMOUS_CODING(LOW|SILENT|atC/atT|I320|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_157049_157117)	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2859,217,0
+chr1	157058	.	G	A	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;DP=69;Dels=0.00;FS=2.053;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=0.597;QD=14.53;ReadPosRankSum=0.814;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gag/Aag|E323K|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_157049_157117)	GT:AD:DP:GQ:PL	0/1:38,31:69:99:1031,0,1223
+chr1	157169	.	C	T	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;DP=58;Dels=0.00;FS=2.379;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=0.173;QD=13.27;ReadPosRankSum=0.973;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:33,25:58:99:798,0,1053
+chr1	157239	.	C	T	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DP=58;Dels=0.00;FS=11.764;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.039;QD=14.77;ReadPosRankSum=1.165;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:32,26:58:99:885,0,1106
+chr1	157240	.	T	A	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;DP=58;Dels=0.00;FS=11.764;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.086;QD=14.63;ReadPosRankSum=1.196;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:32,26:58:99:877,0,1125
+chr1	157275	.	G	A	1900.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.20;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1929,147,0
+chr1	157331	.	G	A	1541.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.39;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1570,117,0
+chr1	157449	.	C	G	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7886;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=0.040;QD=18.19;ReadPosRankSum=-0.929;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:24,33:57:99:1065,0,774
+chr1	157515	.	T	A	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;DP=64;Dels=0.00;FS=5.101;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=-0.839;QD=16.73;ReadPosRankSum=0.879;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:32,32:64:99:1099,0,1080
+chr1	157636	.	T	G	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=0;MQRankSum=-0.591;QD=13.12;ReadPosRankSum=0.988;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:42,29:71:99:960,0,1393
+chr1	157678	.	C	T	2841.77	.	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=30.90;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2870,214,0
+chr1	157733	.	T	G	2546.77	.	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=1;QD=32.27;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2575,190,0
+chr1	157895	.	A	G	2244.77	.	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=2;QD=30.24;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2273,169,0
+chr1	157961	.	G	A	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;DP=56;Dels=0.00;FS=2.293;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=0.124;QD=14.01;ReadPosRankSum=0.654;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:32,24:56:99:813,0,1117
+chr1	158098	.	C	T	10.9	LowQual	AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.90;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,1:1:3:37,3,0
+chr1	158261	.	T	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.67;MQ0=3;MQRankSum=1.231;QD=5.72;ReadPosRankSum=-1.231;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:6,2:8:28:74,0,28
+chr1	158283	.	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=1;MLEAF=0.500;MQ=14.13;MQ0=34;MQRankSum=1.733;QD=0.77;ReadPosRankSum=-1.733;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:42,2:44:62:62,0,105
+chr1	158288	.	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3135;MLEAC=1;MLEAF=0.500;MQ=14.13;MQ0=34;MQRankSum=1.733;QD=0.81;ReadPosRankSum=-0.898;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:42,2:44:64:64,0,104
+chr1	158368	.	A	G	424.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=32.67;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:36:453,36,0
+chr1	158427	.	G	A	21.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;DP=16;Dels=0.00;FS=17.404;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.30;MQ0=1;MQRankSum=0.505;QD=1.36;ReadPosRankSum=2.093;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:13,3:16:50:50,0,292
+chr1	158461	.	C	A	13.95	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;DP=16;Dels=0.00;FS=11.139;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=39.10;MQ0=1;MQRankSum=-1.083;QD=0.87;ReadPosRankSum=-0.505;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:12,4:16:42:42,0,369
+chr1	158596	.	T	C	606.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.058;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=5;MQRankSum=1.809;QD=18.96;ReadPosRankSum=0.444;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:4,28:32:32:635,32,0
+chr1	158745	.	A	G	347.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=3;QD=21.74;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:33:376,33,0
+chr1	159147	.	A	G	38.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:66,6,0
+chr1	159238	.	C	T	2056.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=32.71;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2085,157,0
+chr1	159252	.	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=33.84;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1571,117,0
+chr1	159421	.	C	A	2132.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=24.99;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2161,163,0
+chr1	159489	.	A	C	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DP=35;Dels=0.00;FS=5.503;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=-0.782;QD=9.99;ReadPosRankSum=0.122;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,12:35:99:378,0,778
+chr1	159490	.	G	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DP=36;Dels=0.00;FS=5.305;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=-0.017;QD=8.80;ReadPosRankSum=0.285;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:24,12:36:99:345,0,811
+chr1	159582	.	A	C	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-0.531;QD=16.89;ReadPosRankSum=0.155;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:30,34:64:99:1109,0,986
+chr1	159628	.	G	A	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=1.246;QD=12.01;ReadPosRankSum=1.624;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:33,22:55:99:689,0,1123
+chr1	159661	.	T	C	1693.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.35;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1722,132,0
+chr1	159721	.	T	G	1542.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=1;QD=30.48;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1571,120,0
+chr1	159818	.	G	C	2039.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=1;QD=29.67;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2068,157,0
+chr1	159860	.	A	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;DP=31;Dels=0.00;FS=1.455;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=1;MQRankSum=1.161;QD=15.99;ReadPosRankSum=-0.581;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:16,15:31:99:524,0,479
+chr1	159991	.	T	A	2027.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.38;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2056,154,0
+chr1	160001	.	G	A	1962.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.39;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1991,147,0
+chr1	160043	.	A	G	1679.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.51;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1708,126,0
+chr1	160064	.	A	G	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;DP=44;Dels=0.00;FS=4.575;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.662;QD=13.65;ReadPosRankSum=2.440;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:24,20:44:99:629,0,815
+chr1	160171	.	C	A	1993.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.78;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gCt/gAt|A363D|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_160110_160217)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2022,156,0
+chr1	160220	.	A	G	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;DP=63;Dels=0.00;FS=8.766;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=1;MQRankSum=0.585;QD=15.46;ReadPosRankSum=0.275;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:32,31:63:99:1002,0,1082
+chr1	160223	.	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=1;QD=28.87;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,62:63:99:2426,184,0
+chr1	160312	.	T	C	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=1;MQRankSum=0.460;QD=18.96;ReadPosRankSum=0.700;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:19,32:51:99:995,0,618
+chr1	160344	.	G	T	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=1;MQRankSum=-0.844;QD=17.19;ReadPosRankSum=-1.600;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,33:58:99:1025,0,815
+chr1	160346	.	C	T	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=1;MQRankSum=-1.756;QD=18.01;ReadPosRankSum=-2.002;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,35:60:99:1109,0,813
+chr1	160403	.	C	T	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;DP=47;Dels=0.00;FS=2.597;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=1;MQRankSum=0.187;QD=15.87;ReadPosRankSum=1.792;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:774,0,801
+chr1	160457	.	T	C	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;DP=50;Dels=0.00;FS=6.171;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=1;MQRankSum=-1.072;QD=15.06;ReadPosRankSum=-0.691;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,24:50:99:781,0,825
+chr1	160628	.	A	G	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;DP=56;Dels=0.00;FS=3.920;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.486;QD=20.10;ReadPosRankSum=0.964;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,32:55:99:1154,0,734
+chr1	160653	.	T	C	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;DP=49;Dels=0.00;FS=2.547;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.131;QD=19.12;ReadPosRankSum=1.337;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:965,0,743
+chr1	160771	.	A	G	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=0.483;QD=11.82;ReadPosRankSum=0.983;EFF=SYNONYMOUS_CODING(LOW|SILENT|agA/agG|R393|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_160727_160819)	GT:AD:DP:GQ:PL	0/1:20,15:35:99:442,0,684
+chr1	160830	.	T	C	1740.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=32.09;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1769,129,0
+chr1	160855	.	T	G	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;DP=49;Dels=0.00;FS=2.463;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=0.510;QD=16.59;ReadPosRankSum=0.790;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:25,24:49:99:841,0,789
+chr1	160924	.	A	T	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;DP=45;Dels=0.00;FS=4.461;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=1;MQRankSum=0.305;QD=15.66;ReadPosRankSum=2.608;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:24,21:45:99:733,0,738
+chr1	161085	.	T	C	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;DP=50;Dels=0.00;FS=4.041;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.708;QD=19.92;ReadPosRankSum=0.314;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,29:50:99:1024,0,658
+chr1	161127	.	C	T	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;DP=43;Dels=0.00;FS=2.692;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.281;QD=14.51;ReadPosRankSum=0.159;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:24,19:43:99:652,0,837
+chr1	161227	.	G	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DP=54;Dels=0.00;FS=1.054;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.588;QD=17.01;ReadPosRankSum=1.522;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atG/atA|M421I|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_161192_161296)	GT:AD:DP:GQ:PL	0/1:27,27:54:99:947,0,859
+chr1	161350	.	A	G	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;DP=58;Dels=0.00;FS=2.273;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=1;MQRankSum=-1.366;QD=13.12;ReadPosRankSum=0.024;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:34,24:58:99:789,0,1101
+chr1	161518	.	G	T	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.343;QD=20.21;ReadPosRankSum=0.639;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:22,30:52:99:1079,0,713
+chr1	161550	.	T	G	2153.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2182,163,0
+chr1	161583	.	T	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;DP=48;Dels=0.00;FS=1.275;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.066;QD=17.70;ReadPosRankSum=-0.672;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:22,26:48:99:878,0,744
+chr1	161598	.	A	G	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.505;QD=16.36;ReadPosRankSum=-0.176;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:22,22:44:99:748,0,762
+chr1	161607	.	G	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.527;QD=16.56;ReadPosRankSum=0.154;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:790,0,787
+chr1	161743	.	A	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.492;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=57.06;MQ0=1;MQRankSum=0.379;QD=15.60;ReadPosRankSum=-1.327;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aaa/Caa|K479Q|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_161641_161847)	GT:AD:DP:GQ:PL	0/1:19,22:41:99:668,0,538
+chr1	161769	.	A	T	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=46;Dels=0.00;FS=9.187;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=1;MQRankSum=0.471;QD=19.49;ReadPosRankSum=0.172;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaA/aaT|K487N|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_161641_161847)	GT:AD:DP:GQ:PL	0/1:19,27:46:99:925,0,511
+chr1	161794	.	A	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;DP=52;Dels=0.00;FS=10.280;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=56.58;MQ0=1;MQRankSum=-0.009;QD=11.69;ReadPosRankSum=-2.236;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ata/Cta|I496L|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_161641_161847)	GT:AD:DP:GQ:PL	0/1:27,25:52:99:636,0,971
+chr1	161795	.	T	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;DP=53;Dels=0.00;FS=10.399;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=1;MQRankSum=-0.513;QD=12.26;ReadPosRankSum=-2.363;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTa/aAa|I496K|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_161641_161847)	GT:AD:DP:GQ:PL	0/1:27,26:53:99:678,0,963
+chr1	161822	.	C	T	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;DP=66;Dels=0.00;FS=11.007;HaplotypeScore=3.5506;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=1;MQRankSum=-1.119;QD=13.63;ReadPosRankSum=1.484;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCa/cTa|P505L|Cc01g00140|mRNA||GSCOCT00012421001|Exon_chr1_161641_161847)	GT:AD:DP:GQ:PL	0/1:35,30:66:99:928,0,1200
+chr1	161928	.	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=29.28;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1817,138,0
+chr1	162022	.	A	G	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=0.169;QD=11.01;ReadPosRankSum=1.409;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:40,25:65:99:744,0,1397
+chr1	162207	.	G	A	2798.77	.	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.29;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2827,214,0
+chr1	162353	.	G	C	1411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.839;QD=20.46;ReadPosRankSum=0.322;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,42:69:99:1440,0,796
+chr1	162433	.	T	G	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;DP=62;Dels=0.00;FS=3.875;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=2.175;QD=11.56;ReadPosRankSum=0.455;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:38,24:62:99:745,0,1353
+chr1	162531	.	C	T	1811.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.50;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1840,141,0
+chr1	162535	.	G	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;DP=48;Dels=0.00;FS=1.450;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.094;QD=13.18;ReadPosRankSum=0.596;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,20:48:99:661,0,948
+chr1	162542	.	A	C,T	1553.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;QD=32.36;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/2:0,28,20:48:99:1782,749,665,1033,0,973
+chr1	162739	.	G	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;DP=6;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=0.406;QD=11.29;ReadPosRankSum=-1.537;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:3,3:6:45:96,0,45
+chr1	162750	.	G	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=8;Dels=0.00;FS=7.068;HaplotypeScore=2.9939;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=1.517;QD=14.97;ReadPosRankSum=-1.920;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:3,5:8:77:148,0,77
+chr1	162805	.	C	T	21.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DP=24;Dels=0.00;FS=6.214;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.920;QD=0.91;ReadPosRankSum=0.611;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,3:24:50:50,0,779
+chr1	162820	.	T	C	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;DP=28;Dels=0.00;FS=7.181;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.539;QD=5.78;ReadPosRankSum=-2.122;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:21,7:28:99:190,0,773
+chr1	162833	.	A	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944;DP=31;Dels=0.00;FS=12.129;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.218;QD=26.80;ReadPosRankSum=0.130;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:6,24:31:99:859,0,157
+chr1	163107	.	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=1;QD=30.33;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1606,117,0
+chr1	163152	.	G	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;DP=54;Dels=0.00;FS=5.807;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQ0=0;MQRankSum=0.996;QD=10.96;ReadPosRankSum=-0.127;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:35,19:54:99:620,0,1162
+chr1	163218	.	T	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DP=50;Dels=0.00;FS=3.842;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.806;QD=15.84;ReadPosRankSum=-0.456;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:26,24:50:99:820,0,917
+chr1	163281	.	T	A	1020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DP=49;Dels=0.00;FS=5.959;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.365;QD=20.83;ReadPosRankSum=-0.133;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:19,30:49:99:1049,0,617
+chr1	163602	.	A	T	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;DP=60;Dels=0.00;FS=1.004;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.135;QD=20.08;ReadPosRankSum=-1.080;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:25,35:60:99:1233,0,823
+chr1	163615	.	A	C	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DP=61;Dels=0.00;FS=0.975;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.905;QD=15.06;ReadPosRankSum=0.485;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:33,28:61:99:947,0,1113
+chr1	163628	.	T	C	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;DP=65;Dels=0.00;FS=0.942;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=-0.992;QD=16.09;ReadPosRankSum=0.046;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:34,31:65:99:1074,0,1122
+chr1	163725	.	C	T	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=1;MQRankSum=1.996;QD=17.52;ReadPosRankSum=-0.090;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:27,30:57:99:1027,0,891
+chr1	163736	.	G	C	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=1;MQRankSum=-0.360;QD=17.74;ReadPosRankSum=-0.280;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:27,31:58:99:1057,0,874
+chr1	163748	.	T	G	2436.77	.	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=1;QD=33.58;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:1,62:63:99:2465,187,0
+chr1	163777	.	C	A	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.340;DP=58;Dels=0.00;FS=2.434;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=2;MQRankSum=0.445;QD=18.15;ReadPosRankSum=0.330;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:27,31:58:99:1081,0,777
+chr1	163806	.	C	T	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;DP=52;Dels=0.00;FS=4.176;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=1;MQRankSum=0.386;QD=15.90;ReadPosRankSum=0.763;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:26,26:52:99:855,0,885
+chr1	163808	.	A	G	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;DP=49;Dels=0.00;FS=2.654;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=1;MQRankSum=-2.064;QD=17.10;ReadPosRankSum=0.186;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:23,26:49:99:866,0,770
+chr1	163854	.	A	G	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=1;MQRankSum=-1.274;QD=13.14;ReadPosRankSum=0.742;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:27,20:47:99:646,0,892
+chr1	163894	.	A	C	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.626;QD=14.66;ReadPosRankSum=0.011;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:24,21:45:99:688,0,813
+chr1	163957	.	T	A	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DP=61;Dels=0.00;FS=3.596;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.570;QD=15.70;ReadPosRankSum=-1.105;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:32,29:61:99:986,0,1103
+chr1	163980	.	A	G	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;DP=63;Dels=0.00;FS=3.778;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.763;QD=16.33;ReadPosRankSum=-1.010;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:32,31:63:99:1057,0,1126
+chr1	164145	.	A	T	2835.77	.	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.01;MQ0=0;QD=32.13;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2864,220,0
+chr1	164203	.	T	G	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DP=77;Dels=0.00;FS=0.917;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.110;QD=13.15;ReadPosRankSum=1.352;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:44,33:77:99:1041,0,1470
+chr1	164252	.	A	C	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;DP=65;Dels=0.00;FS=3.361;HaplotypeScore=3.6644;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.297;QD=19.07;ReadPosRankSum=-0.284;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:29,36:65:99:1268,0,967
+chr1	164282	.	T	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;DP=64;Dels=0.00;FS=8.767;HaplotypeScore=1.7886;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-0.443;QD=17.37;ReadPosRankSum=0.484;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:31,33:64:99:1140,0,1007
+chr1	164379	.	G	A	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=1.487;QD=17.46;ReadPosRankSum=0.834;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:35,37:72:99:1285,0,1107
+chr1	164466	.	A	T	2375.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=28.88;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2404,181,0
+chr1	164494	.	T	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.082;QD=11.78;ReadPosRankSum=2.323;EFF=INTRON(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:32,20:52:99:641,0,1102
+chr1	164861	.	T	C	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DP=68;Dels=0.00;FS=4.986;HaplotypeScore=1.9732;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=-0.679;QD=18.48;ReadPosRankSum=-1.576;EFF=UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:28,40:68:99:1285,0,918
+chr1	164906	.	A	G	2110.77	.	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.84;EFF=UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2139,163,0
+chr1	164958	.	A	G	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;DP=50;Dels=0.00;FS=1.129;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=0.295;QD=12.86;ReadPosRankSum=-1.081;EFF=UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:29,21:50:99:671,0,981
+chr1	165095	.	G	A	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DP=52;Dels=0.00;FS=2.379;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.531;QD=16.03;ReadPosRankSum=-0.751;EFF=UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|)	GT:AD:DP:GQ:PL	0/1:27,25:52:99:862,0,944
+chr1	165389	.	T	G	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;DP=62;Dels=0.00;FS=5.213;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=52.87;MQ0=0;MQRankSum=-2.850;QD=14.77;ReadPosRankSum=-1.735;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:33,29:62:99:944,0,1149
+chr1	165407	.	C	A	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;DP=64;Dels=0.00;FS=2.112;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.97;MQ0=0;MQRankSum=-5.528;QD=13.62;ReadPosRankSum=-1.455;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:36,28:64:99:900,0,1192
+chr1	165447	.	A	G	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=49;Dels=0.00;FS=5.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.96;MQ0=0;MQRankSum=4.271;QD=17.83;ReadPosRankSum=-0.211;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:22,27:49:99:902,0,692
+chr1	165482	.	G	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=1;MLEAF=0.500;MQ=54.61;MQ0=0;MQRankSum=-0.596;QD=13.47;ReadPosRankSum=0.190;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:21,19:42:99:594,0,720
+chr1	165483	.	G	T	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=1;MLEAF=0.500;MQ=54.70;MQ0=0;MQRankSum=-1.082;QD=15.12;ReadPosRankSum=0.196;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:20,21:41:99:648,0,635
+chr1	165526	.	C	T	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.764;QD=21.70;ReadPosRankSum=0.631;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:17,30:47:99:1048,0,485
+chr1	165678	.	C	T	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;DP=56;Dels=0.00;FS=5.297;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=54.10;MQ0=0;MQRankSum=-3.048;QD=17.67;ReadPosRankSum=0.468;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:26,30:56:99:1018,0,833
+chr1	165701	.	T	A	1032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=55.17;MQ0=0;MQRankSum=-1.305;QD=19.86;ReadPosRankSum=0.839;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:21,31:52:99:1061,0,610
+chr1	165957	.	G	A	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;DP=42;Dels=0.00;FS=6.343;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.657;QD=17.66;ReadPosRankSum=0.227;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:19,23:42:99:770,0,629
+chr1	165982	.	T	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;DP=35;Dels=0.00;FS=1.320;HaplotypeScore=2.6981;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-1.007;QD=15.28;ReadPosRankSum=-0.677;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:17,18:35:99:563,0,552
+chr1	166129	.	A	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;DP=41;Dels=0.00;FS=4.533;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-0.719;QD=14.24;ReadPosRankSum=2.261;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:22,19:41:99:612,0,716
+chr1	166135	.	T	G	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=40;Dels=0.00;FS=4.837;HaplotypeScore=2.7214;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=-1.300;QD=15.12;ReadPosRankSum=1.625;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:21,19:40:99:633,0,714
+chr1	166157	.	C	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DP=19;Dels=0.00;FS=17.041;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=1.592;QD=16.30;ReadPosRankSum=-0.122;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:9,10:19:99:338,0,285
+chr1	166165	.	G	A	819.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=35.10;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,22:22:66:848,66,0
+chr1	166187	.	T	C	745.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.25;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:774,60,0
+chr1	166200	.	C	T	1299.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=13.5158;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=30.02;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1328,99,0
+chr1	166214	.	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=54.69;MQ0=0;MQRankSum=-5.017;QD=10.28;ReadPosRankSum=-1.750;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:20,15:35:99:388,0,673
+chr1	166219	.	A	G	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.67;MQ0=0;MQRankSum=-5.166;QD=12.70;ReadPosRankSum=-0.843;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:21,16:37:99:498,0,722
+chr1	166226	.	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;DP=35;Dels=0.00;FS=1.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=0;MQRankSum=-5.050;QD=14.16;ReadPosRankSum=1.043;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:19,16:35:99:524,0,649
+chr1	166233	.	G	A	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=54.82;MQ0=0;MQRankSum=-4.961;QD=13.89;ReadPosRankSum=2.701;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:21,17:38:99:556,0,691
+chr1	166248	.	G	A	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;DP=37;Dels=0.00;FS=2.870;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=0;MQRankSum=-3.398;QD=13.51;ReadPosRankSum=2.423;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:20,17:37:99:528,0,645
+chr1	166255	.	A	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DP=34;Dels=0.00;FS=3.155;HaplotypeScore=13.4643;MLEAC=1;MLEAF=0.500;MQ=56.99;MQ0=0;MQRankSum=-3.919;QD=12.88;ReadPosRankSum=2.220;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:19,15:34:99:466,0,539
+chr1	166256	.	C	T	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DP=35;Dels=0.00;FS=2.984;HaplotypeScore=14.4309;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-3.394;QD=13.59;ReadPosRankSum=2.003;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:19,16:35:99:504,0,583
+chr1	166297	.	G	A	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=52;Dels=0.00;FS=1.203;HaplotypeScore=4.3119;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=-0.194;QD=19.76;ReadPosRankSum=0.843;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:22,30:52:99:1056,0,614
+chr1	166322	.	T	A	1149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=1.305;QD=19.16;ReadPosRankSum=0.500;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:26,34:60:99:1178,0,786
+chr1	166453	.	A	G	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;DP=55;Dels=0.00;FS=9.665;HaplotypeScore=2.6999;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-0.583;QD=17.09;ReadPosRankSum=-2.426;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:25,30:55:99:968,0,816
+chr1	166585	.	G	A	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;DP=56;Dels=0.00;FS=2.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=-1.945;QD=13.09;ReadPosRankSum=0.923;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:31,25:56:99:761,0,1060
+chr1	166654	.	A	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;DP=46;Dels=0.00;FS=4.286;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=1;MQRankSum=-1.445;QD=16.45;ReadPosRankSum=0.375;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:21,25:46:99:785,0,700
+chr1	166658	.	T	G	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;DP=44;Dels=0.00;FS=9.040;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=1;MQRankSum=-2.277;QD=15.95;ReadPosRankSum=0.572;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:20,24:44:99:730,0,641
+chr1	166669	.	G	C	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;DP=42;Dels=0.00;FS=15.562;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=1;MQRankSum=-0.595;QD=17.68;ReadPosRankSum=-0.013;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:17,25:42:99:771,0,549
+chr1	166716	.	A	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762;DP=46;Dels=0.00;FS=4.124;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.93;MQ0=2;MQRankSum=-1.715;QD=15.93;ReadPosRankSum=-0.846;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:21,25:46:99:761,0,715
+chr1	166733	.	T	G	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;DP=52;Dels=0.00;FS=5.964;HaplotypeScore=1.7337;MLEAC=1;MLEAF=0.500;MQ=56.36;MQ0=2;MQRankSum=-1.925;QD=13.15;ReadPosRankSum=0.362;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:28,24:52:99:712,0,936
+chr1	166734	.	G	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;DP=54;Dels=0.00;FS=5.816;HaplotypeScore=3.7324;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=2;MQRankSum=-2.232;QD=12.46;ReadPosRankSum=0.732;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:30,24:54:99:701,0,1010
+chr1	166737	.	T	C	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DP=56;Dels=0.00;FS=5.681;HaplotypeScore=4.7320;MLEAC=1;MLEAF=0.500;MQ=56.63;MQ0=2;MQRankSum=-1.928;QD=11.89;ReadPosRankSum=1.083;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:32,24:56:99:694,0,1084
+chr1	166751	.	A	C	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;DP=57;Dels=0.00;FS=2.274;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=1;MQRankSum=-0.813;QD=14.42;ReadPosRankSum=0.550;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:30,27:57:99:850,0,1009
+chr1	166834	.	G	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DP=38;Dels=0.00;FS=25.349;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=1;MQRankSum=0.410;QD=15.34;ReadPosRankSum=0.167;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:19,19:38:99:611,0,646
+chr1	166877	.	T	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;DP=32;Dels=0.00;FS=21.686;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.083;QD=13.74;ReadPosRankSum=1.273;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:18,14:32:99:468,0,592
+chr1	166961	.	T	C	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;DP=32;Dels=0.00;FS=15.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.468;QD=8.99;ReadPosRankSum=1.769;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:22,10:32:99:316,0,780
+chr1	167041	.	T	A	743.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=16.8441;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=34.22;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:63:772,63,0
+chr1	167090	.	C	T	1469.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=28.97;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1498,114,0
+chr1	167165	.	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=31.21;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1604,120,0
+chr1	167170	.	A	C	1602.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=33.93;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1631,123,0
+chr1	167208	.	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.870;QD=12.28;ReadPosRankSum=1.405;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:27,19:46:99:593,0,944
+chr1	167228	.	C	G	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=45;Dels=0.00;FS=2.529;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.633;QD=18.57;ReadPosRankSum=1.519;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:20,25:45:99:864,0,666
+chr1	167283	.	A	G	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;DP=47;Dels=0.00;FS=13.823;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.906;QD=17.55;ReadPosRankSum=1.333;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:22,25:47:99:853,0,735
+chr1	167363	.	T	A	1954.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.93;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1983,153,0
+chr1	167371	.	G	A	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DP=51;Dels=0.00;FS=2.387;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.897;QD=17.33;ReadPosRankSum=0.066;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:24,27:51:99:912,0,760
+chr1	167399	.	G	T	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.632;QD=16.20;ReadPosRankSum=-0.531;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:26,29:55:99:919,0,873
+chr1	167568	.	C	T	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;DP=47;Dels=0.00;FS=4.301;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=0.926;QD=14.91;ReadPosRankSum=-1.266;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:24,23:47:99:729,0,770
+chr1	167574	.	G	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;DP=45;Dels=0.00;FS=4.485;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=0.580;QD=14.26;ReadPosRankSum=-1.718;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:24,21:45:99:670,0,813
+chr1	167656	.	G	A	1543.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=29.62;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1572,123,0
+chr1	167672	.	C	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=0;MQRankSum=-2.527;QD=11.41;ReadPosRankSum=-0.834;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:24,17:41:99:496,0,851
+chr1	167681	.	A	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQ0=0;MQRankSum=-0.635;QD=12.42;ReadPosRankSum=-1.397;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:28,22:50:99:649,0,985
+chr1	168087	.	G	A	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.7985;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=0.503;QD=14.59;ReadPosRankSum=0.781;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:26,21:47:99:714,0,900
+chr1	168095	.	G	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-1.112;QD=17.61;ReadPosRankSum=0.611;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:23,26:49:99:891,0,777
+chr1	168096	.	G	A	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-0.551;QD=14.46;ReadPosRankSum=-0.851;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:26,23:49:99:737,0,907
+chr1	168153	.	A	G	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DP=44;Dels=0.00;FS=6.747;HaplotypeScore=3.9991;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=1.608;QD=15.79;ReadPosRankSum=-0.065;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:19,22:44:99:723,0,628
+chr1	168196	.	G	A	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DP=34;Dels=0.00;FS=3.353;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=58.40;MQ0=0;MQRankSum=0.659;QD=13.11;ReadPosRankSum=-0.069;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:19,15:34:99:474,0,581
+chr1	168202	.	G	T	1401.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=39.21;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1430,108,0
+chr1	168341	.	T	C	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DP=58;Dels=0.00;FS=1.012;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.993;QD=13.50;ReadPosRankSum=-0.649;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:32,26:58:99:811,0,1056
+chr1	168360	.	G	T	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;DP=55;Dels=0.00;FS=2.266;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.955;QD=12.69;ReadPosRankSum=-0.177;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:30,25:55:99:726,0,991
+chr1	168533	.	C	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=0.230;QD=11.62;ReadPosRankSum=-1.027;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCa/cTa|P42L|Cc01g00150|mRNA||GSCOCT00012419001|Exon_chr1_168361_168782)	GT:AD:DP:GQ:PL	0/1:21,16:37:99:458,0,718
+chr1	168548	.	A	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=0.239;QD=11.20;ReadPosRankSum=-0.299;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tAc/tTc|Y47F|Cc01g00150|mRNA||GSCOCT00012419001|Exon_chr1_168361_168782)	GT:AD:DP:GQ:PL	0/1:23,15:38:99:454,0,793
+chr1	168693	.	T	C	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;DP=42;Dels=0.00;FS=4.987;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=2;MQRankSum=-0.505;QD=10.83;ReadPosRankSum=2.382;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),SYNONYMOUS_CODING(LOW|SILENT|tcT/tcC|S95|Cc01g00150|mRNA||GSCOCT00012419001|Exon_chr1_168361_168782)	GT:AD:DP:GQ:PL	0/1:26,15:42:99:483,0,823
+chr1	168747	.	A	T	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;DP=48;Dels=0.00;FS=4.386;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=1;MQRankSum=0.649;QD=14.06;ReadPosRankSum=-0.309;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),SYNONYMOUS_CODING(LOW|SILENT|ggA/ggT|G113|Cc01g00150|mRNA||GSCOCT00012419001|Exon_chr1_168361_168782)	GT:AD:DP:GQ:PL	0/1:25,23:48:99:703,0,783
+chr1	168840	.	T	C	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;DP=52;Dels=0.00;FS=5.785;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=58.50;MQ0=0;MQRankSum=1.858;QD=15.55;ReadPosRankSum=0.540;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:26,26:52:99:837,0,857
+chr1	168897	.	T	C	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;DP=57;Dels=0.00;FS=5.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQ0=0;MQRankSum=0.583;QD=14.80;ReadPosRankSum=0.120;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:30,27:57:99:872,0,987
+chr1	168928	.	C	T	2404.77	.	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=62.12;MQ0=0;QD=31.90;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2433,184,0
+chr1	168963	.	A	C	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;DP=70;Dels=0.00;FS=0.909;HaplotypeScore=4.3674;MLEAC=1;MLEAF=0.500;MQ=61.66;MQ0=1;MQRankSum=1.602;QD=15.61;ReadPosRankSum=0.462;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:35,35:70:99:1121,0,1161
+chr1	168974	.	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;DP=49;Dels=0.00;FS=5.429;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=1;MQRankSum=-4.252;QD=5.02;ReadPosRankSum=2.424;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:38,11:49:99:274,0,1377
+chr1	168984	.	G	A	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;DP=50;Dels=0.00;FS=1.222;HaplotypeScore=2.6583;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=1;MQRankSum=-3.464;QD=8.06;ReadPosRankSum=1.051;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:35,15:50:99:431,0,1261
+chr1	169015	.	C	G	1930.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=1;QD=24.59;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1959,147,0
+chr1	169059	.	T	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;DP=48;Dels=0.00;FS=1.206;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.445;QD=9.25;ReadPosRankSum=2.069;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:33,15:48:99:472,0,1188
+chr1	169061	.	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.503;QD=10.74;ReadPosRankSum=0.995;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:33,18:51:99:576,0,1182
+chr1	169185	.	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DP=50;Dels=0.00;FS=4.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=0.980;QD=11.94;ReadPosRankSum=-1.594;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:30,20:50:99:625,0,1008
+chr1	169348	.	G	T	2385.77	.	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.35;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2414,181,0
+chr1	169423	.	G	A	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;DP=40;Dels=0.00;FS=4.763;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=1;MQRankSum=0.324;QD=14.74;ReadPosRankSum=-0.211;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:21,19:40:99:618,0,620
+chr1	169424	.	C	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DP=40;Dels=0.00;FS=4.763;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=1;MQRankSum=0.690;QD=14.42;ReadPosRankSum=0.014;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:19,21:40:99:605,0,616
+chr1	169456	.	C	G	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;DP=47;Dels=0.00;FS=13.725;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=1;MQRankSum=-1.163;QD=13.68;ReadPosRankSum=0.388;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:26,21:47:99:671,0,799
+chr1	169607	.	G	A	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DP=58;Dels=0.00;FS=3.625;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.227;QD=14.24;ReadPosRankSum=1.290;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:32,26:58:99:854,0,1075
+chr1	169642	.	G	A	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;DP=58;Dels=0.00;FS=3.717;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-0.639;QD=14.27;ReadPosRankSum=-0.998;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:31,27:58:99:856,0,1091
+chr1	169648	.	A	G	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;DP=59;Dels=0.00;FS=5.223;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=0.312;QD=14.28;ReadPosRankSum=-0.616;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:32,27:59:99:871,0,1059
+chr1	169705	.	C	T	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DP=63;Dels=0.00;FS=0.971;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-0.354;QD=12.92;ReadPosRankSum=0.979;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:36,27:63:99:842,0,1216
+chr1	169719	.	G	A	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;DP=60;Dels=0.00;FS=0.971;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=1.529;QD=13.80;ReadPosRankSum=1.290;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:34,26:60:99:856,0,1191
+chr1	169815	.	T	C	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DP=85;Dels=0.00;FS=5.036;HaplotypeScore=1.7339;MLEAC=1;MLEAF=0.500;MQ=57.77;MQ0=1;MQRankSum=-0.413;QD=6.71;ReadPosRankSum=-0.785;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:63,22:85:99:599,0,2148
+chr1	169830	.	T	G	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DP=82;Dels=0.00;FS=5.065;HaplotypeScore=4.3793;MLEAC=1;MLEAF=0.500;MQ=58.40;MQ0=1;MQRankSum=0.781;QD=7.48;ReadPosRankSum=-0.522;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:58,24:82:99:642,0,1903
+chr1	169867	.	A	T	1602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;DP=92;Dels=0.00;FS=3.988;HaplotypeScore=1.7331;MLEAC=1;MLEAF=0.500;MQ=57.78;MQ0=0;MQRankSum=0.596;QD=17.42;ReadPosRankSum=0.004;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:40,51:92:99:1631,0,1086
+chr1	169896	.	A	G	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;DP=92;Dels=0.00;FS=1.896;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-1.080;QD=8.30;ReadPosRankSum=0.557;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:65,27:92:99:792,0,2212
+chr1	169909	.	A	G	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;DP=89;Dels=0.00;FS=2.916;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=1.306;QD=21.46;ReadPosRankSum=-1.499;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:35,54:89:99:1938,0,1053
+chr1	169968	.	C	T	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=24.7819;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-0.734;QD=6.51;ReadPosRankSum=1.116;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:72,23:95:99:647,0,2530
+chr1	169972	.	T	C	2032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=24.7819;MLEAC=1;MLEAF=0.500;MQ=58.87;MQ0=0;MQRankSum=-1.407;QD=20.53;ReadPosRankSum=0.611;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:37,62:99:99:2061,0,1189
+chr1	169997	.	G	T	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;DP=92;Dels=0.00;FS=3.217;HaplotypeScore=46.8443;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=1.054;QD=7.27;ReadPosRankSum=-0.769;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:68,24:92:99:697,0,2342
+chr1	170001	.	A	C	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;DP=93;Dels=0.00;FS=3.202;HaplotypeScore=65.8412;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=0.583;QD=6.35;ReadPosRankSum=-0.298;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:70,23:93:99:619,0,2321
+chr1	170005	.	T	A	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=62.8400;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=0.339;QD=9.09;ReadPosRankSum=1.319;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:60,31:91:99:855,0,2167
+chr1	170011	.	T	A	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;DP=90;Dels=0.00;FS=3.403;HaplotypeScore=40.8458;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=0.801;QD=6.26;ReadPosRankSum=0.496;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:69,21:90:99:592,0,2430
+chr1	170043	.	G	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=92;Dels=0.00;FS=6.914;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.005;QD=5.60;ReadPosRankSum=0.648;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:72,20:92:99:543,0,2449
+chr1	170079	.	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;DP=84;Dels=0.00;FS=36.316;HaplotypeScore=155.6412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.479;QD=3.88;ReadPosRankSum=-1.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:69,15:84:99:354,0,2529
+chr1	170134	.	C	T	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;DP=84;Dels=0.00;FS=25.920;HaplotypeScore=2.3987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.915;QD=2.15;ReadPosRankSum=1.360;EFF=DOWNSTREAM(MODIFIER||||Cc01g00140|mRNA||GSCOCT00012421001|),DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:71,13:84:99:209,0,2556
+chr1	170169	.	T	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DP=75;Dels=0.00;FS=22.598;HaplotypeScore=2.7329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.239;QD=2.08;ReadPosRankSum=1.348;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:65,10:75:99:184,0,2327
+chr1	170210	.	A	C	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;DP=80;Dels=0.00;FS=12.034;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=1;MQRankSum=-0.591;QD=11.07;ReadPosRankSum=-0.955;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:50,30:80:99:914,0,1744
+chr1	170224	.	G	A	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DP=77;Dels=0.00;FS=12.005;HaplotypeScore=3.7332;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=1;MQRankSum=-0.353;QD=11.24;ReadPosRankSum=-0.225;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:48,29:77:99:894,0,1620
+chr1	170239	.	C	A	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;DP=71;Dels=0.00;FS=8.610;HaplotypeScore=2.7334;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=1;MQRankSum=-0.098;QD=11.11;ReadPosRankSum=1.434;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:45,26:71:99:817,0,1578
+chr1	170266	.	C	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-1.051;QD=9.33;ReadPosRankSum=0.076;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:49,24:73:99:709,0,1696
+chr1	170289	.	A	G	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;DP=77;Dels=0.00;FS=2.006;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=-0.339;QD=9.96;ReadPosRankSum=-2.375;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:51,26:77:99:795,0,1734
+chr1	170303	.	G	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;DP=63;Dels=0.00;FS=33.610;HaplotypeScore=17.9844;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=0.166;QD=5.60;ReadPosRankSum=2.598;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:47,16:63:99:381,0,1693
+chr1	170304	.	A	G	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DP=63;Dels=0.00;FS=8.306;HaplotypeScore=17.9844;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=0.545;QD=6.76;ReadPosRankSum=0.497;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:47,16:63:99:454,0,1606
+chr1	170360	.	C	T	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DP=63;Dels=0.00;FS=0.955;HaplotypeScore=2.5184;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-0.256;QD=13.00;ReadPosRankSum=0.740;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:35,28:63:99:847,0,1189
+chr1	170364	.	C	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;DP=59;Dels=0.00;FS=2.175;HaplotypeScore=2.5184;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=0.510;QD=14.08;ReadPosRankSum=0.936;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:32,27:59:99:859,0,1076
+chr1	170366	.	C	T	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=59;Dels=0.00;FS=1.010;HaplotypeScore=2.5184;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.234;QD=14.39;ReadPosRankSum=0.842;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:31,27:59:99:877,0,1076
+chr1	170381	.	C	T	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;DP=59;Dels=0.00;FS=9.493;HaplotypeScore=9.7866;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.356;QD=11.00;ReadPosRankSum=-0.214;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:38,21:59:99:677,0,1290
+chr1	170382	.	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;DP=59;Dels=0.00;FS=7.433;HaplotypeScore=10.7863;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.341;QD=3.44;ReadPosRankSum=0.302;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:48,11:59:99:231,0,1765
+chr1	170393	.	T	A	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;DP=67;Dels=0.00;FS=1.050;HaplotypeScore=21.7756;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=0.059;QD=12.73;ReadPosRankSum=0.008;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:29,26:67:99:881,0,961
+chr1	170403	.	C	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;DP=68;Dels=0.00;FS=2.482;HaplotypeScore=25.9777;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-0.799;QD=5.08;ReadPosRankSum=0.192;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:53,15:68:99:374,0,1880
+chr1	170482	.	T	C	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=57;Dels=0.00;FS=11.052;HaplotypeScore=19.8261;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=-0.166;QD=8.54;ReadPosRankSum=0.166;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:40,17:57:99:515,0,1440
+chr1	170483	.	C	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;DP=54;Dels=0.00;FS=14.133;HaplotypeScore=21.8256;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-1.397;QD=9.20;ReadPosRankSum=-0.317;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:37,17:54:99:525,0,1294
+chr1	170487	.	A	G	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=21.8256;MLEAC=1;MLEAF=0.500;MQ=59.26;MQ0=0;MQRankSum=0.892;QD=3.05;ReadPosRankSum=-0.045;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:47,9:56:99:199,0,1721
+chr1	170502	.	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;DP=57;Dels=0.00;FS=1.273;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=0.354;QD=4.54;ReadPosRankSum=-1.122;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:46,11:57:99:287,0,1595
+chr1	170515	.	G	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;DP=63;Dels=0.00;FS=10.967;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-2.124;QD=6.27;ReadPosRankSum=1.540;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:47,16:63:99:423,0,1617
+chr1	170578	.	C	G	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=32.9738;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=1.493;QD=8.29;ReadPosRankSum=-0.627;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:46,19:65:99:567,0,1665
+chr1	170582	.	C	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;DP=65;Dels=0.00;FS=12.918;HaplotypeScore=32.9738;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.097;QD=7.18;ReadPosRankSum=2.829;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:48,17:65:99:495,0,1695
+chr1	170584	.	C	T	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DP=66;Dels=0.00;FS=3.389;HaplotypeScore=31.9744;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=-0.899;QD=17.30;ReadPosRankSum=2.390;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:31,35:66:99:1170,0,1057
+chr1	170628	.	C	T	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;DP=67;Dels=0.00;FS=2.101;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.26;MQ0=0;MQRankSum=0.483;QD=13.62;ReadPosRankSum=0.659;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:35,32:67:99:941,0,1173
+chr1	170648	.	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DP=67;Dels=0.00;FS=6.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.90;MQ0=0;MQRankSum=-1.055;QD=1.77;ReadPosRankSum=1.823;EFF=DOWNSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),INTRON(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|)	GT:AD:DP:GQ:PL	0/1:55,12:67:99:147,0,1992
+chr1	170807	.	C	G	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;DP=63;Dels=0.00;FS=8.737;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=0.906;QD=13.71;ReadPosRankSum=-0.546;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:35,28:63:99:892,0,1101
+chr1	170817	.	G	A	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;DP=59;Dels=0.00;FS=3.720;HaplotypeScore=21.9878;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=0.618;QD=13.42;ReadPosRankSum=0.206;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:33,26:59:99:820,0,1062
+chr1	170849	.	A	T	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;DP=51;Dels=0.00;FS=13.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=-0.123;QD=15.02;ReadPosRankSum=0.426;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:28,23:51:99:794,0,925
+chr1	170873	.	A	T	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;DP=58;Dels=0.00;FS=17.770;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=0.826;QD=17.91;ReadPosRankSum=-1.590;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:27,31:58:99:1067,0,865
+chr1	170879	.	G	A	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;DP=59;Dels=0.00;FS=14.005;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.493;QD=16.74;ReadPosRankSum=-0.538;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:29,30:59:99:1016,0,929
+chr1	170937	.	C	G	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;DP=60;Dels=0.00;FS=5.062;HaplotypeScore=3.7392;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=1.504;QD=15.53;ReadPosRankSum=-1.652;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:32,28:60:99:960,0,1076
+chr1	170995	.	G	T	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.784;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=0;MQRankSum=-1.752;QD=18.44;ReadPosRankSum=0.000;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:23,27:50:99:950,0,694
+chr1	171012	.	A	G	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;DP=55;Dels=0.00;FS=2.354;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=-2.330;QD=21.27;ReadPosRankSum=1.308;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:21,34:55:99:1198,0,645
+chr1	171029	.	C	T	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9467;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-3.183;QD=20.21;ReadPosRankSum=2.472;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:18,34:52:99:1079,0,514
+chr1	171034	.	A	G	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.9467;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=-1.803;QD=23.54;ReadPosRankSum=1.874;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:18,37:55:99:1323,0,554
+chr1	171062	.	A	G	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;DP=52;Dels=0.00;FS=2.506;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=-3.024;QD=23.63;ReadPosRankSum=-0.527;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:17,35:52:99:1257,0,545
+chr1	171065	.	C	A	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;DP=51;Dels=0.00;FS=2.449;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=0;MQRankSum=-1.908;QD=23.74;ReadPosRankSum=-0.689;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:17,34:51:99:1239,0,544
+chr1	171068	.	G	T	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=-1.725;QD=23.96;ReadPosRankSum=-1.153;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:17,36:53:99:1298,0,506
+chr1	171215	.	C	T	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;DP=66;Dels=0.00;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=0.155;QD=18.66;ReadPosRankSum=1.227;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:29,37:66:99:1260,0,877
+chr1	171376	.	A	G	2221.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.05;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2250,169,0
+chr1	171546	.	A	T	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=52;Dels=0.00;FS=1.174;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.350;QD=17.88;ReadPosRankSum=-1.345;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:23,29:52:99:958,0,752
+chr1	171611	.	A	G	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.578;QD=15.99;ReadPosRankSum=-0.148;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:23,22:45:99:748,0,784
+chr1	171683	.	C	T	1678.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.93;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1707,132,0
+chr1	171685	.	A	G	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.182;QD=15.73;ReadPosRankSum=1.811;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:689,0,730
+chr1	171706	.	C	G	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;DP=45;Dels=0.00;FS=1.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.351;QD=15.73;ReadPosRankSum=0.307;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:23,22:45:99:736,0,753
+chr1	171990	.	G	T	2282.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=29.50;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2311,172,0
+chr1	172009	.	G	A	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720;DP=61;Dels=0.00;FS=11.177;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=0.109;QD=12.93;ReadPosRankSum=-0.605;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:35,26:61:99:817,0,1209
+chr1	172061	.	A	G	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DP=51;Dels=0.00;FS=18.810;HaplotypeScore=2.4678;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=1.159;QD=15.94;ReadPosRankSum=1.837;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:26,25:51:99:841,0,812
+chr1	172078	.	G	A	1642.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=30.41;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1671,129,0
+chr1	172093	.	C	T	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DP=35;Dels=0.00;FS=3.303;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=0.728;QD=22.02;ReadPosRankSum=0.444;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:11,24:35:99:799,0,305
+chr1	172108	.	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=32.9713;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=0;MQRankSum=-1.397;QD=2.10;ReadPosRankSum=-0.826;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UTR_3_PRIME(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:17,7:27:85:85,0,539
+chr1	172146	.	G	C	1035.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=28.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCg/aGg|T826R|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,29:29:84:1064,84,0
+chr1	172150	.	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.44;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Att/Gtt|I825V|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1079,87,0
+chr1	172178	.	T	C	1336.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.42;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ccA/ccG|P815|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1365,114,0
+chr1	172179	.	G	C	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;DP=38;Dels=0.00;FS=9.942;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.716;QD=12.55;ReadPosRankSum=1.798;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCa/cGa|P815R|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:20,18:38:99:505,0,656
+chr1	172203	.	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;DP=46;Dels=0.00;FS=11.390;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-2.028;QD=12.73;ReadPosRankSum=0.233;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tCg/tTg|S807L|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:26,20:46:99:614,0,792
+chr1	172283	.	C	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.63;MQ0=0;MQRankSum=-0.747;QD=9.21;ReadPosRankSum=-0.237;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ggG/ggA|G780|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:19,14:33:99:332,0,598
+chr1	172319	.	A	G	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DP=33;Dels=0.00;FS=1.475;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=1;MQRankSum=0.833;QD=22.99;ReadPosRankSum=0.346;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|agT/agC|S768|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:10,23:33:99:787,0,281
+chr1	172364	.	T	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=1;MQRankSum=0.201;QD=23.02;ReadPosRankSum=-0.128;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ccA/ccG|P753|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:10,26:36:99:857,0,295
+chr1	172459	.	T	C	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;DP=43;Dels=0.00;FS=14.539;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=1;MQRankSum=0.000;QD=20.90;ReadPosRankSum=0.289;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Att/Gtt|I722V|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:16,27:43:99:927,0,470
+chr1	172499	.	A	G	1675.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.64;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ctT/ctC|L708|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1704,129,0
+chr1	172613	.	G	C	2055.77	.	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=34.84;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ctC/ctG|L670|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2084,162,0
+chr1	172721	.	A	G	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;DP=52;Dels=0.00;FS=10.166;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=0.276;QD=14.23;ReadPosRankSum=-0.958;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|gaT/gaC|D634|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:29,23:52:99:768,0,1005
+chr1	172810	.	T	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DP=54;Dels=0.00;FS=5.733;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=1;MQRankSum=0.733;QD=10.96;ReadPosRankSum=0.362;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agt/Ggt|S605G|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:35,19:54:99:620,0,1125
+chr1	173004	.	G	A	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=-1.007;QD=16.90;ReadPosRankSum=0.693;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCt/aTt|T540I|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:19,22:41:99:721,0,631
+chr1	173180	.	C	T	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.132;QD=14.91;ReadPosRankSum=1.155;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|tcG/tcA|S481|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:20,18:38:99:595,0,656
+chr1	173273	.	A	C	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;DP=55;Dels=0.00;FS=3.786;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.026;QD=19.10;ReadPosRankSum=-0.077;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|cgT/cgG|R450|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:23,32:55:99:1079,0,685
+chr1	173338	.	C	G	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;DP=53;Dels=0.00;FS=1.043;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.759;QD=14.54;ReadPosRankSum=-1.349;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtt/Ctt|V429L|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:29,24:53:99:799,0,968
+chr1	173346	.	C	T	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.210;QD=13.37;ReadPosRankSum=-0.770;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gGg/gAg|G426E|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:31,23:54:99:750,0,981
+chr1	173348	.	A	G	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.467;QD=12.61;ReadPosRankSum=-0.220;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|aaT/aaC|N425|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:32,22:54:99:709,0,1099
+chr1	173405	.	A	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;DP=42;Dels=0.00;FS=9.292;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-1.162;QD=12.76;ReadPosRankSum=-0.177;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ctT/ctC|L406|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:23,19:42:99:564,0,777
+chr1	173410	.	C	T	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;DP=46;Dels=0.00;FS=8.606;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.794;QD=17.91;ReadPosRankSum=0.243;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtc/Atc|V405I|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:21,25:46:99:852,0,607
+chr1	173421	.	C	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DP=45;Dels=0.00;FS=11.272;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=0.582;QD=13.37;ReadPosRankSum=-0.377;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tGg/tTg|W401L|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:25,20:45:99:630,0,843
+chr1	173444	.	G	A	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DP=48;Dels=0.00;FS=1.134;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-0.970;QD=10.77;ReadPosRankSum=0.696;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|atC/atT|I393|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:29,19:48:99:545,0,1014
+chr1	173446	.	T	C	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;DP=49;Dels=0.00;FS=2.535;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=-1.190;QD=11.95;ReadPosRankSum=0.417;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Atc/Gtc|I393V|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:29,20:49:99:614,0,949
+chr1	173456	.	G	C	1836.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=29.53;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ctC/ctG|L389|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1865,141,0
+chr1	173462	.	A	G	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DP=52;Dels=0.00;FS=5.860;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-0.951;QD=11.80;ReadPosRankSum=0.186;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|aaT/aaC|N387|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:31,21:52:99:642,0,1078
+chr1	173510	.	C	T	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DP=53;Dels=0.00;FS=1.110;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=2;MQRankSum=-0.086;QD=9.45;ReadPosRankSum=-0.699;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ccG/ccA|P371|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:30,23:53:99:529,0,994
+chr1	173561	.	T	C	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;DP=55;Dels=0.00;FS=1.072;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=57.65;MQ0=2;MQRankSum=0.864;QD=14.30;ReadPosRankSum=0.027;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|aaA/aaG|K354|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:28,27:55:99:815,0,864
+chr1	173585	.	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DP=52;Dels=0.00;FS=2.386;HaplotypeScore=2.7882;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=1;MQRankSum=-1.379;QD=11.82;ReadPosRankSum=0.561;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|atC/atT|I346|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:30,22:52:99:643,0,934
+chr1	173596	.	C	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;DP=52;Dels=0.00;FS=1.065;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=1;MQRankSum=-0.331;QD=17.67;ReadPosRankSum=0.407;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gct/Tct|A343S|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:23,29:52:99:947,0,721
+chr1	173627	.	A	G	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;DP=52;Dels=0.00;FS=1.082;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=1;MQRankSum=0.180;QD=16.84;ReadPosRankSum=-0.218;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ctT/ctC|L332|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:23,29:52:99:904,0,775
+chr1	173642	.	A	T	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.002;DP=46;Dels=0.00;FS=6.250;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=-0.935;QD=13.82;ReadPosRankSum=0.143;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|gcT/gcA|A327|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:24,22:46:99:664,0,819
+chr1	173687	.	T	C	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.658;QD=14.97;ReadPosRankSum=0.094;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ggA/ggG|G312|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:23,21:44:99:687,0,788
+chr1	173717	.	A	G	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;DP=36;Dels=0.00;FS=4.925;HaplotypeScore=1.7323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.982;QD=17.52;ReadPosRankSum=0.982;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|gaT/gaC|D302|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:17,19:36:99:659,0,518
+chr1	173759	.	C	T	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;DP=43;Dels=0.00;FS=6.309;HaplotypeScore=1.8237;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-1.154;QD=15.46;ReadPosRankSum=-0.158;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|gaG/gaA|E288|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:693,0,696
+chr1	173818	.	C	A	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=-1.032;QD=15.94;ReadPosRankSum=-1.071;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gct/Tct|A269S|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:23,27:50:99:825,0,741
+chr1	173846	.	G	A	1783.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=28.29;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|tcC/tcT|S259|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1812,141,0
+chr1	173921	.	G	A	1387.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.71;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ctC/ctT|L234|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1416,105,0
+chr1	173942	.	C	T	1229.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.21;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|tcG/tcA|S227|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,32:32:93:1258,93,0
+chr1	173991	.	T	A	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=-1.550;QD=13.08;ReadPosRankSum=0.583;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cTg|Q211L|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:20,15:35:99:486,0,659
+chr1	174026	.	G	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;DP=42;Dels=0.00;FS=2.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=-0.579;QD=14.71;ReadPosRankSum=1.484;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|agC/agA|S199R|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:21,21:42:99:646,0,703
+chr1	174172	.	T	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=-1.622;QD=1.68;ReadPosRankSum=-3.635;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agc/Tgc|S151C|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:43,7:50:99:112,0,1507
+chr1	174192	.	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=0;MQRankSum=-1.855;QD=3.51;ReadPosRankSum=-0.846;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCg/aTg|T144M|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:37,8:45:99:186,0,1296
+chr1	174204	.	T	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;DP=46;Dels=0.00;FS=1.159;HaplotypeScore=5.9821;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=1.606;QD=12.86;ReadPosRankSum=-1.451;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAt/cGt|H140R|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:26,20:46:99:620,0,865
+chr1	174214	.	T	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=37;Dels=0.00;FS=1.982;HaplotypeScore=7.7151;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=-0.595;QD=1.37;ReadPosRankSum=2.653;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aaa/Caa|K137Q|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:31,5:37:79:79,0,1105
+chr1	174232	.	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-1.789;QD=3.93;ReadPosRankSum=0.000;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ggc/Agc|G131S|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:27,7:34:99:162,0,947
+chr1	174240	.	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;DP=32;Dels=0.00;FS=1.814;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=-2.100;QD=2.99;ReadPosRankSum=0.941;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCa/cTa|P128L|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:26,6:32:99:124,0,917
+chr1	174248	.	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=-3.194;QD=1.13;ReadPosRankSum=0.917;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ggC/ggT|G125|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:25,4:29:61:61,0,891
+chr1	174251	.	C	T	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=-3.203;QD=0.99;ReadPosRankSum=0.885;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|caG/caA|Q124|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:26,4:30:58:58,0,916
+chr1	174253	.	G	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=-3.037;QD=1.88;ReadPosRankSum=0.853;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cag/Aag|Q124K|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:23,4:27:79:79,0,826
+chr1	174257	.	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.91;MQ0=0;MQRankSum=-3.037;QD=1.77;ReadPosRankSum=1.263;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|caC/caT|H122|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:23,4:27:76:76,0,816
+chr1	174272	.	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-3.196;QD=2.54;ReadPosRankSum=1.370;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|gaC/gaT|D117|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:26,5:31:99:107,0,934
+chr1	174280	.	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=56.63;MQ0=0;MQRankSum=-3.218;QD=2.37;ReadPosRankSum=1.090;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctg/Atg|L115M|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:27,5:32:99:104,0,957
+chr1	174286	.	G	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=56.45;MQ0=0;MQRankSum=-3.303;QD=2.44;ReadPosRankSum=0.510;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctg/Gtg|L113V|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:26,5:31:99:104,0,936
+chr1	174310	.	C	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=9.6555;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=0;MQRankSum=-2.399;QD=19.31;ReadPosRankSum=-1.013;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gct/Act|A105T|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:11,24:35:99:704,0,322
+chr1	174313	.	G	C	21.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DP=37;Dels=0.00;FS=2.191;HaplotypeScore=9.6555;MLEAC=1;MLEAF=0.500;MQ=55.34;MQ0=0;MQRankSum=-2.812;QD=0.59;ReadPosRankSum=-0.024;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctc/Gtc|L104V|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:33,4:37:50:50,0,1107
+chr1	174316	.	C	T	20.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DP=37;Dels=0.00;FS=2.191;HaplotypeScore=9.9900;MLEAC=1;MLEAF=0.500;MQ=55.34;MQ0=0;MQRankSum=-2.812;QD=0.56;ReadPosRankSum=-0.416;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtc/Atc|V103I|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:33,4:37:49:49,0,1123
+chr1	174328	.	C	T	16.86	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=56.03;MQ0=0;MQRankSum=-2.863;QD=0.42;ReadPosRankSum=-0.113;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtt/Att|V99I|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:36,4:40:45:45,0,1148
+chr1	174343	.	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=7.9983;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=-3.088;QD=1.11;ReadPosRankSum=0.307;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gat/Aat|D94N|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:40,5:45:78:78,0,1238
+chr1	174344	.	A	C	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=7.9983;MLEAC=1;MLEAF=0.500;MQ=56.47;MQ0=0;MQRankSum=3.308;QD=9.99;ReadPosRankSum=-2.122;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|acT/acG|T93|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:29,16:45:99:478,0,949
+chr1	174366	.	A	G	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=-4.432;QD=2.63;ReadPosRankSum=-0.077;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTt/cCt|L86P|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:48,9:57:99:178,0,1581
+chr1	174384	.	G	A	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=12.0923;MLEAC=1;MLEAF=0.500;MQ=57.82;MQ0=0;MQRankSum=-4.975;QD=3.53;ReadPosRankSum=0.848;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCc/cTc|P80L|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:51,11:62:99:247,0,1745
+chr1	174411	.	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=17.8235;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-4.738;QD=2.14;ReadPosRankSum=1.981;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tGt/tAt|C71Y|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:48,9:57:99:150,0,1746
+chr1	174419	.	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=17.8235;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=-4.754;QD=1.78;ReadPosRankSum=1.634;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|agG/agA|R68|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:50,9:59:99:133,0,1748
+chr1	174420	.	C	T	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;DP=60;Dels=0.00;FS=1.030;HaplotypeScore=17.8235;MLEAC=1;MLEAF=0.500;MQ=58.46;MQ0=0;MQRankSum=2.493;QD=11.21;ReadPosRankSum=-0.030;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGg/aAg|R68K|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:37,23:60:99:701,0,1219
+chr1	174440	.	G	A	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DP=60;Dels=0.00;FS=3.855;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=-4.283;QD=0.50;ReadPosRankSum=-0.299;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|tcC/tcT|S61|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:53,7:60:58:58,0,1883
+chr1	174476	.	C	T	1633.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.230;DP=51;Dels=0.00;FS=10.504;HaplotypeScore=2.3300;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=2.857;QD=32.03;ReadPosRankSum=-0.813;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|tcG/tcA|S49|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:3,48:51:40:1662,40,0
+chr1	174490	.	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;DP=53;Dels=0.00;FS=8.491;HaplotypeScore=2.3724;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-3.764;QD=2.13;ReadPosRankSum=-0.584;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gac/Aac|D45N|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:45,8:53:99:141,0,1535
+chr1	174501	.	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;DP=50;Dels=0.00;FS=5.507;HaplotypeScore=2.3724;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=-3.283;QD=3.02;ReadPosRankSum=-0.808;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGc/cAc|R41H|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:41,9:50:99:179,0,1448
+chr1	174533	.	C	G	2385.77	.	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=25.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),SYNONYMOUS_CODING(LOW|SILENT|ctG/ctC|L30|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2414,184,0
+chr1	174565	.	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;DP=66;Dels=0.00;FS=2.875;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=57.27;MQ0=0;MQRankSum=-1.776;QD=3.19;ReadPosRankSum=0.604;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Act/Gct|T20A|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:54,11:66:99:239,0,1827
+chr1	174590	.	C	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;DP=58;Dels=0.00;FS=6.430;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.01;MQ0=0;MQRankSum=-2.077;QD=1.20;ReadPosRankSum=-0.979;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|ttG/ttT|L11F|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:51,7:58:98:98,0,1786
+chr1	174616	.	C	T	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.4534;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=-0.293;QD=18.46;ReadPosRankSum=0.434;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gcg/Acg|A3T|Cc01g00160|mRNA||GSCOCT00012418001|Exon_chr1_170781_174622)	GT:AD:DP:GQ:PL	0/1:21,28:49:99:933,0,662
+chr1	174675	.	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;DP=42;Dels=0.00;FS=11.439;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.088;QD=15.57;ReadPosRankSum=0.869;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:22,20:42:99:682,0,737
+chr1	174689	.	G	A	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=47;Dels=0.00;FS=8.283;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=-0.221;QD=14.08;ReadPosRankSum=0.485;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:25,21:47:99:690,0,836
+chr1	174766	.	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=25.9922;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=1;MQRankSum=2.107;QD=3.74;ReadPosRankSum=-1.264;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:36,8:44:99:193,0,1204
+chr1	174767	.	G	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=25.9922;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=1;MQRankSum=-1.576;QD=3.65;ReadPosRankSum=-0.702;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:36,8:44:99:189,0,1253
+chr1	174776	.	G	T	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;DP=30;Dels=0.00;FS=12.809;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=1;MQRankSum=-0.811;QD=17.13;ReadPosRankSum=0.417;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:13,17:30:99:542,0,441
+chr1	174825	.	T	C	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.264;DP=30;Dels=0.00;FS=5.710;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.15;MQ0=0;MQRankSum=-2.260;QD=18.79;ReadPosRankSum=0.711;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:13,17:30:99:592,0,412
+chr1	174849	.	C	T	503.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=9.9864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.85;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:39:532,39,0
+chr1	174856	.	T	C	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DP=31;Dels=0.00;FS=1.862;HaplotypeScore=9.9864;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=1;MQRankSum=-3.069;QD=13.77;ReadPosRankSum=-2.821;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:15,16:31:99:455,0,505
+chr1	174866	.	G	T	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=1;MQRankSum=-2.467;QD=18.28;ReadPosRankSum=-2.747;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:14,21:35:99:668,0,443
+chr1	174893	.	G	C	1410.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=27.44;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1439,108,0
+chr1	174896	.	A	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;DP=36;Dels=0.00;FS=7.563;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=-1.893;QD=18.63;ReadPosRankSum=2.054;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:15,21:36:99:699,0,483
+chr1	174908	.	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;DP=36;Dels=0.00;FS=7.479;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=0.525;QD=14.19;ReadPosRankSum=-1.480;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:20,16:36:99:539,0,683
+chr1	174931	.	A	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;DP=33;Dels=0.00;FS=7.712;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-0.630;QD=15.27;ReadPosRankSum=0.486;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:17,16:33:99:532,0,597
+chr1	174937	.	T	C	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DP=33;Dels=0.00;FS=7.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-1.284;QD=14.39;ReadPosRankSum=0.524;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:18,15:33:99:503,0,630
+chr1	174940	.	C	A	1210.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=29.84;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1239,93,0
+chr1	174946	.	T	C	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;DP=35;Dels=0.00;FS=10.992;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-1.150;QD=13.19;ReadPosRankSum=0.150;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:20,15:35:99:490,0,676
+chr1	174949	.	A	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DP=37;Dels=0.00;FS=16.331;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=-0.751;QD=13.40;ReadPosRankSum=-0.291;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:21,16:37:99:524,0,731
+chr1	174959	.	A	C	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;DP=36;Dels=0.00;FS=23.979;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-0.535;QD=11.58;ReadPosRankSum=0.016;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:22,14:36:99:445,0,733
+chr1	174960	.	G	C	1421.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.9996;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=27.65;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1450,108,0
+chr1	174965	.	A	G	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DP=38;Dels=0.00;FS=25.258;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=0;MQRankSum=0.777;QD=15.76;ReadPosRankSum=1.173;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:17,20:38:99:627,0,565
+chr1	175000	.	T	C	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DP=31;Dels=0.00;FS=19.167;HaplotypeScore=3.5778;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=1.048;QD=16.86;ReadPosRankSum=0.217;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:15,16:31:99:551,0,513
+chr1	175050	.	C	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;DP=25;Dels=0.00;FS=1.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.01;MQ0=0;MQRankSum=-3.633;QD=11.15;ReadPosRankSum=2.247;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:15,10:25:99:307,0,488
+chr1	175051	.	G	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;DP=25;Dels=0.00;FS=1.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.08;MQ0=0;MQRankSum=-4.077;QD=10.91;ReadPosRankSum=2.247;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:15,10:25:99:301,0,523
+chr1	175057	.	G	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;DP=23;Dels=0.00;FS=1.713;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=-3.752;QD=12.08;ReadPosRankSum=1.830;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:13,10:23:99:306,0,446
+chr1	175058	.	T	C	814.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=27.90;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:63:843,63,0
+chr1	175059	.	A	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;DP=24;Dels=0.00;FS=3.741;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.91;MQ0=0;MQRankSum=3.766;QD=15.28;ReadPosRankSum=-1.622;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:11,13:24:99:395,0,347
+chr1	175061	.	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;DP=26;Dels=0.00;FS=1.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=-3.944;QD=10.22;ReadPosRankSum=1.609;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:15,11:26:99:294,0,532
+chr1	175067	.	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;DP=33;Dels=0.00;FS=1.428;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.56;MQ0=0;MQRankSum=4.465;QD=14.78;ReadPosRankSum=1.067;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:18,15:33:99:516,0,577
+chr1	175070	.	T	C	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;DP=33;Dels=0.00;FS=1.428;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.56;MQ0=0;MQRankSum=-4.501;QD=17.05;ReadPosRankSum=-1.284;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:15,18:33:99:591,0,501
+chr1	175078	.	G	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;DP=37;Dels=0.00;FS=1.331;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=-4.709;QD=17.24;ReadPosRankSum=-1.021;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:17,20:37:99:666,0,570
+chr1	175079	.	G	A	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;DP=37;Dels=0.00;FS=1.331;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=-4.800;QD=17.35;ReadPosRankSum=-1.204;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:17,20:37:99:670,0,560
+chr1	175082	.	T	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;DP=37;Dels=0.00;FS=1.331;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=4.587;QD=14.75;ReadPosRankSum=1.082;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:20,17:37:99:574,0,663
+chr1	175088	.	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.728;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=0;MQRankSum=-4.931;QD=16.17;ReadPosRankSum=-0.267;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:19,20:39:99:659,0,646
+chr1	175118	.	A	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;DP=33;Dels=0.00;FS=1.402;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=52.45;MQ0=0;MQRankSum=4.681;QD=18.99;ReadPosRankSum=-2.131;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:14,19:33:99:655,0,376
+chr1	175131	.	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;DP=32;Dels=0.00;FS=1.440;HaplotypeScore=18.3970;MLEAC=1;MLEAF=0.500;MQ=54.29;MQ0=0;MQRankSum=-4.457;QD=11.06;ReadPosRankSum=1.226;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:20,12:32:99:382,0,689
+chr1	175148	.	T	G	21.8	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=55.44;MQ0=0;MQRankSum=-2.725;QD=1.21;ReadPosRankSum=-0.237;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:15,3:18:50:50,0,556
+chr1	175149	.	T	C	617.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=34.32;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,17:18:48:646,48,0
+chr1	175157	.	T	C	17.84	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=1;MLEAF=0.500;MQ=55.69;MQ0=0;MQRankSum=-2.739;QD=0.94;ReadPosRankSum=-1.174;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:16,3:19:46:46,0,572
+chr1	175160	.	C	T	14.91	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=55.69;MQ0=0;MQRankSum=-2.739;QD=0.78;ReadPosRankSum=-1.398;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:16,3:19:43:43,0,598
+chr1	175191	.	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;DP=24;Dels=0.00;FS=2.644;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.83;MQ0=0;MQRankSum=-3.412;QD=1.41;ReadPosRankSum=-1.208;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:19,5:24:62:62,0,696
+chr1	175195	.	A	G	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=24;Dels=0.00;FS=2.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.83;MQ0=0;MQRankSum=3.341;QD=27.91;ReadPosRankSum=0.213;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:5,19:24:71:698,0,71
+chr1	175196	.	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;DP=23;Dels=0.00;FS=2.671;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.60;MQ0=0;MQRankSum=-3.391;QD=1.90;ReadPosRankSum=-0.261;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:18,5:23:72:72,0,661
+chr1	175215	.	A	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;DP=26;Dels=0.00;FS=15.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.78;MQ0=0;MQRankSum=-4.028;QD=6.64;ReadPosRankSum=-0.028;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:18,8:26:99:201,0,652
+chr1	175251	.	C	T	1564.77	.	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=35.86;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1593,117,0
+chr1	175255	.	C	A	1746.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=28.21;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1775,132,0
+chr1	175270	.	T	G	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DP=54;Dels=0.00;FS=2.436;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=54.07;MQ0=0;MQRankSum=-5.061;QD=12.94;ReadPosRankSum=-0.484;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:32,22:54:99:727,0,1094
+chr1	175316	.	G	A	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=52.26;MQ0=0;MQRankSum=-3.991;QD=13.74;ReadPosRankSum=1.775;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:27,20:47:99:674,0,909
+chr1	175333	.	A	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;DP=41;Dels=0.00;FS=1.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=-4.353;QD=11.17;ReadPosRankSum=0.675;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:24,17:41:99:486,0,819
+chr1	175342	.	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.71;MQ0=0;MQRankSum=-4.498;QD=9.69;ReadPosRankSum=0.475;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:25,15:40:99:416,0,840
+chr1	175343	.	A	G	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.90;MQ0=0;MQRankSum=-4.561;QD=9.21;ReadPosRankSum=0.528;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:26,15:41:99:406,0,870
+chr1	175351	.	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=53.10;MQ0=0;MQRankSum=-4.553;QD=8.76;ReadPosRankSum=-0.073;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:25,14:39:99:370,0,874
+chr1	175354	.	T	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=52.75;MQ0=0;MQRankSum=-4.347;QD=8.35;ReadPosRankSum=-0.626;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:23,13:36:99:329,0,790
+chr1	175364	.	T	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;DP=34;Dels=0.00;FS=1.879;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=53.40;MQ0=0;MQRankSum=-4.021;QD=4.35;ReadPosRankSum=-0.859;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:25,9:34:99:176,0,882
+chr1	175395	.	C	T	1069.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=29.50;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:81:1098,81,0
+chr1	175462	.	C	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=54;Dels=0.00;FS=9.949;HaplotypeScore=6.9505;MLEAC=1;MLEAF=0.500;MQ=51.04;MQ0=2;MQRankSum=-4.141;QD=7.07;ReadPosRankSum=-0.828;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:39,15:54:99:410,0,1172
+chr1	175465	.	G	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;DP=52;Dels=0.00;FS=7.479;HaplotypeScore=6.9505;MLEAC=1;MLEAF=0.500;MQ=50.66;MQ0=2;MQRankSum=-4.022;QD=7.53;ReadPosRankSum=-0.931;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:36,15:52:99:420,0,1104
+chr1	175476	.	A	G	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.975;DP=49;Dels=0.00;FS=9.035;HaplotypeScore=4.6337;MLEAC=1;MLEAF=0.500;MQ=50.04;MQ0=2;MQRankSum=-4.277;QD=8.16;ReadPosRankSum=2.099;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:33,16:49:99:428,0,984
+chr1	175478	.	A	G	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.647;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6337;MLEAC=1;MLEAF=0.500;MQ=50.04;MQ0=2;MQRankSum=-5.820;QD=8.67;ReadPosRankSum=4.142;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:453,0,901
+chr1	175489	.	G	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;DP=42;Dels=0.00;FS=4.393;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=48.18;MQ0=2;MQRankSum=-3.213;QD=10.16;ReadPosRankSum=4.079;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:27,15:42:99:455,0,695
+chr1	175502	.	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;DP=37;Dels=0.00;FS=3.650;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.65;MQ0=1;MQRankSum=-5.014;QD=10.10;ReadPosRankSum=3.034;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:23,14:37:99:402,0,770
+chr1	175510	.	G	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DP=29;Dels=0.00;FS=4.386;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.46;MQ0=1;MQRankSum=-4.339;QD=8.82;ReadPosRankSum=1.942;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:19,10:29:99:284,0,642
+chr1	175518	.	C	T	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;DP=29;Dels=0.00;FS=2.032;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.46;MQ0=1;MQRankSum=4.291;QD=21.16;ReadPosRankSum=-0.791;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:11,18:29:99:642,0,280
+chr1	175519	.	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DP=26;Dels=0.00;FS=1.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.53;MQ0=1;MQRankSum=-3.990;QD=6.95;ReadPosRankSum=0.903;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	0/1:18,8:26:99:209,0,614
+chr1	175550	.	T	C	868.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=29.72;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:897,69,0
+chr1	175583	.	C	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DP=43;Dels=0.00;FS=3.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.67;MQ0=0;MQRankSum=-4.384;QD=4.32;ReadPosRankSum=-4.607;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:32,11:43:99:214,0,1136
+chr1	175588	.	A	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;DP=44;Dels=0.00;FS=1.379;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.85;MQ0=0;MQRankSum=-4.418;QD=4.88;ReadPosRankSum=-2.846;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:33,11:44:99:243,0,1139
+chr1	175611	.	A	C	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;DP=48;Dels=0.00;FS=1.311;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=52.65;MQ0=0;MQRankSum=-4.679;QD=4.64;ReadPosRankSum=1.869;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:36,12:48:99:251,0,1281
+chr1	175625	.	A	C	1275.77	.	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=28.48;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1304,99,0
+chr1	175674	.	T	C	812.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=33.70;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:63:841,63,0
+chr1	175724	.	C	T	657.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=29.62;EFF=DOWNSTREAM(MODIFIER||||Cc01g00150|mRNA||GSCOCT00012419001|),UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:54:686,54,0
+chr1	175730	.	G	A	621.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=31.41;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:650,51,0
+chr1	175731	.	A	G	612.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=26.71;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:641,51,0
+chr1	175771	.	A	G	825.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=25.43;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,21:22:63:854,63,0
+chr1	175776	.	G	A	814.77	.	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=27.05;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,22:22:66:843,66,0
+chr1	175784	.	T	C	738.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=33.97;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:57:767,57,0
+chr1	175787	.	G	A	702.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=30.59;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:54:731,54,0
+chr1	175809	.	C	T	591.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=29.59;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:45:620,45,0
+chr1	175815	.	G	T	11.12	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=0.594;QD=0.74;ReadPosRankSum=2.123;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:13,2:15:39:39,0,491
+chr1	175833	.	C	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.203;QD=19.75;ReadPosRankSum=-1.203;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:3,6:9:88:206,0,88
+chr1	175887	.	T	A	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;DP=31;Dels=0.00;FS=11.982;HaplotypeScore=2.7335;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=1;MQRankSum=-0.104;QD=15.86;ReadPosRankSum=0.894;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,16:31:99:520,0,468
+chr1	175892	.	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;DP=30;Dels=0.00;FS=11.831;HaplotypeScore=2.7335;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=1;MQRankSum=0.240;QD=15.53;ReadPosRankSum=2.859;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,15:30:99:494,0,466
+chr1	175895	.	T	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;DP=30;Dels=0.00;FS=8.557;HaplotypeScore=2.7335;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=1;MQRankSum=-0.982;QD=14.76;ReadPosRankSum=2.990;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,15:30:99:471,0,475
+chr1	175993	.	C	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.85;MQ0=0;MQRankSum=-0.646;QD=16.77;ReadPosRankSum=0.031;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:11,12:23:99:414,0,304
+chr1	176009	.	T	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=53.56;MQ0=0;MQRankSum=0.380;QD=16.09;ReadPosRankSum=2.507;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:9,11:20:99:350,0,229
+chr1	176036	.	A	T	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;DP=21;Dels=0.00;FS=4.419;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=0;MQRankSum=0.187;QD=19.32;ReadPosRankSum=-1.604;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:7,14:21:99:434,0,213
+chr1	176049	.	C	T	718.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.77;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:747,60,0
+chr1	176097	.	T	G	339.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.98;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:30:368,30,0
+chr1	176139	.	C	T	883.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=32.45;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:912,69,0
+chr1	176158	.	C	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DP=26;Dels=0.00;FS=24.095;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=1.397;QD=10.95;ReadPosRankSum=-0.079;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:16,10:26:99:313,0,559
+chr1	176165	.	T	C	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DP=27;Dels=0.00;FS=25.156;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=0.979;QD=10.81;ReadPosRankSum=-0.226;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,10:27:99:320,0,588
+chr1	176174	.	T	C	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DP=24;Dels=0.00;FS=23.395;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.43;MQ0=0;MQRankSum=-0.381;QD=7.07;ReadPosRankSum=-0.064;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,7:24:99:198,0,602
+chr1	176177	.	G	A	905.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=29.06;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:69:934,69,0
+chr1	176195	.	C	T	1025.77	.	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=32.16;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,28:28:78:1054,78,0
+chr1	176207	.	C	T	870.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=26.36;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:66:899,66,0
+chr1	176233	.	C	T	725.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=26.02;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:57:754,57,0
+chr1	176286	.	G	A	535.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=31.52;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:45:564,45,0
+chr1	176290	.	A	G	560.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=32.99;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:48:589,48,0
+chr1	176293	.	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;DP=17;Dels=0.00;FS=6.117;HaplotypeScore=12.9225;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=0;MQRankSum=1.642;QD=21.99;ReadPosRankSum=2.774;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:4,13:17:99:402,0,106
+chr1	176307	.	T	A	463.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.868;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=15.9189;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-1.519;QD=28.96;ReadPosRankSum=1.519;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:1,15:16:9:491,9,0
+chr1	176308	.	T	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=15.9189;MLEAC=1;MLEAF=0.500;MQ=48.64;MQ0=0;MQRankSum=-2.302;QD=26.30;ReadPosRankSum=1.826;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:2,14:16:32:449,0,32
+chr1	176309	.	T	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;DP=16;Dels=0.00;FS=6.317;HaplotypeScore=14.9199;MLEAC=1;MLEAF=0.500;MQ=48.64;MQ0=0;MQRankSum=-1.637;QD=5.24;ReadPosRankSum=0.667;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:12,4:16:99:112,0,330
+chr1	176346	.	T	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=6.9981;MLEAC=1;MLEAF=0.500;MQ=49.11;MQ0=0;MQRankSum=-1.920;QD=5.44;ReadPosRankSum=-0.175;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,5:20:99:137,0,516
+chr1	176350	.	T	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;DP=21;Dels=0.00;FS=7.501;HaplotypeScore=6.9981;MLEAC=1;MLEAF=0.500;MQ=49.68;MQ0=0;MQRankSum=0.662;QD=22.85;ReadPosRankSum=-0.117;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:6,15:21:99:508,0,178
+chr1	176353	.	T	C	739.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=5.9978;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=24.14;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,20:21:60:768,60,0
+chr1	176364	.	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;DP=30;Dels=0.00;FS=6.914;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.99;MQ0=0;MQRankSum=-0.110;QD=9.29;ReadPosRankSum=-0.374;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:20,10:30:99:307,0,694
+chr1	176371	.	A	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;DP=33;Dels=0.00;FS=9.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.66;MQ0=0;MQRankSum=0.363;QD=9.24;ReadPosRankSum=-0.325;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,11:33:99:333,0,777
+chr1	176377	.	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=32.95;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1364,102,0
+chr1	176389	.	G	C	1302.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.9993;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=22.29;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1331,99,0
+chr1	176391	.	A	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;DP=33;Dels=0.00;FS=9.645;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=55.23;MQ0=0;MQRankSum=0.568;QD=8.05;ReadPosRankSum=-1.273;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:23,10:33:99:294,0,820
+chr1	176394	.	G	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DP=33;Dels=0.00;FS=9.645;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=55.23;MQ0=0;MQRankSum=0.333;QD=8.39;ReadPosRankSum=-0.842;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:23,10:33:99:305,0,820
+chr1	176397	.	C	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.338;DP=32;Dels=0.00;FS=9.755;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=0;MQRankSum=0.427;QD=8.12;ReadPosRankSum=-1.037;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,10:32:99:288,0,782
+chr1	176400	.	G	A	1117.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.9993;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=27.50;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:87:1146,87,0
+chr1	176402	.	T	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;DP=34;Dels=0.00;FS=11.168;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=57.36;MQ0=0;MQRankSum=0.472;QD=19.23;ReadPosRankSum=0.332;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:14,20:34:99:682,0,440
+chr1	176422	.	C	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;DP=43;Dels=0.00;FS=10.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=-0.013;QD=10.02;ReadPosRankSum=0.716;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:27,16:43:99:459,0,874
+chr1	176432	.	G	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;DP=44;Dels=0.00;FS=10.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=0.275;QD=19.24;ReadPosRankSum=-0.131;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:18,26:44:99:875,0,599
+chr1	176471	.	G	C	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;DP=39;Dels=0.00;FS=2.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.520;QD=15.99;ReadPosRankSum=-0.239;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:20,19:39:99:652,0,620
+chr1	176483	.	T	G	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;DP=46;Dels=0.00;FS=2.660;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.714;QD=16.23;ReadPosRankSum=-0.022;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:775,0,731
+chr1	176494	.	G	A	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;DP=44;Dels=0.00;FS=4.658;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.705;QD=17.68;ReadPosRankSum=1.292;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:21,23:44:99:806,0,667
+chr1	176561	.	T	C	1205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;DP=45;Dels=0.00;FS=7.565;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.578;QD=26.79;ReadPosRankSum=-1.424;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:12,33:45:99:1234,0,358
+chr1	176568	.	G	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;DP=44;Dels=0.00;FS=5.029;HaplotypeScore=20.3301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.488;QD=6.49;ReadPosRankSum=1.464;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:33,11:44:99:314,0,1180
+chr1	176599	.	G	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.076;QD=0.94;ReadPosRankSum=-0.227;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:32,4:37:63:63,0,1130
+chr1	176618	.	C	T	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DP=49;Dels=0.00;FS=1.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.553;QD=14.46;ReadPosRankSum=-2.864;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:737,0,944
+chr1	176635	.	C	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.075;QD=13.67;ReadPosRankSum=1.784;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:26,20:46:99:657,0,863
+chr1	176661	.	A	T	1847.77	.	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.95;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1876,141,0
+chr1	176688	.	T	C	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;DP=44;Dels=0.00;FS=5.897;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=58.64;MQ0=1;MQRankSum=-0.962;QD=18.13;ReadPosRankSum=0.110;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:20,24:44:99:826,0,625
+chr1	176698	.	C	T	1695.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.9998;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=1;QD=32.63;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1724,129,0
+chr1	176733	.	G	A	903.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=1;QD=32.93;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:69:932,69,0
+chr1	176761	.	A	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.97;MQ0=1;MQRankSum=1.449;QD=2.15;ReadPosRankSum=-2.457;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,3:18:67:67,0,485
+chr1	176800	.	G	A	390.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=30.63;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:33:419,33,0
+chr1	176848	.	G	T	11.83	LowQual	AC=2;AF=1.00;AN=2;BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;MQRankSum=0.804;QD=5.91;ReadPosRankSum=0.804;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:1,1:2:3:38,3,0
+chr1	177059	.	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.03;MQ0=24;MQRankSum=-1.333;QD=1.47;ReadPosRankSum=2.933;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:27,11:38:84:84,0,91
+chr1	177070	.	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.58;MQ0=27;MQRankSum=-0.689;QD=1.43;ReadPosRankSum=-2.793;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:29,9:39:84:84,0,91
+chr1	177088	.	A	C	29.77	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.40;MQ0=30;MQRankSum=0.825;QD=0.71;ReadPosRankSum=-0.600;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:36,6:42:58:58,0,94
+chr1	177252	.	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=10.59;MQ0=35;MQRankSum=-1.333;QD=1.14;ReadPosRankSum=-1.867;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:36,13:49:84:84,0,91
+chr1	177401	.	A	C	299.78	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;QD=18.74;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:24:328,24,0
+chr1	177522	.	A	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=-1.692;QD=19.39;ReadPosRankSum=-0.971;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:10,15:25:99:513,0,327
+chr1	177533	.	A	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=0;MQRankSum=-1.713;QD=17.07;ReadPosRankSum=-0.415;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:11,15:26:99:472,0,360
+chr1	177599	.	C	T	1453.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.74;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1482,111,0
+chr1	177668	.	A	G	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=-0.893;QD=10.57;ReadPosRankSum=0.741;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:24,14:38:99:430,0,785
+chr1	177672	.	C	G	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=-0.730;QD=11.08;ReadPosRankSum=0.438;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,14:36:99:427,0,755
+chr1	177673	.	T	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=-0.990;QD=11.33;ReadPosRankSum=0.406;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,14:36:99:436,0,759
+chr1	177685	.	C	T	1270.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=40.5933;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=30.38;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1299,96,0
+chr1	177713	.	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.12;MQ0=0;MQRankSum=4.183;QD=19.34;ReadPosRankSum=0.383;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,20:35:99:705,0,508
+chr1	177736	.	T	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.22;MQ0=0;MQRankSum=-4.078;QD=12.81;ReadPosRankSum=0.906;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,15:32:99:438,0,601
+chr1	177753	.	T	A	1468.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=28.29;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1497,114,0
+chr1	177771	.	C	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.27;MQ0=0;MQRankSum=-4.477;QD=16.37;ReadPosRankSum=0.663;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:20,20:40:99:683,0,691
+chr1	177787	.	T	C	1629.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=33.13;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1658,123,0
+chr1	177789	.	A	G	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=0;MQRankSum=4.009;QD=13.47;ReadPosRankSum=1.245;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:25,20:46:99:648,0,869
+chr1	177795	.	G	T	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DP=44;Dels=0.00;FS=1.177;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=0;MQRankSum=-1.983;QD=16.77;ReadPosRankSum=-0.270;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,22:44:99:766,0,709
+chr1	177797	.	C	T	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;DP=43;Dels=0.00;FS=1.177;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.23;MQ0=0;MQRankSum=-2.636;QD=17.06;ReadPosRankSum=-0.595;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:21,22:43:99:762,0,706
+chr1	177814	.	C	T	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;DP=44;Dels=0.00;FS=2.498;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=58.25;MQ0=0;MQRankSum=-2.138;QD=16.18;ReadPosRankSum=-0.047;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:23,21:44:99:740,0,797
+chr1	177863	.	C	A	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;DP=44;Dels=0.00;FS=2.649;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=-0.900;QD=18.79;ReadPosRankSum=0.237;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:19,25:44:99:855,0,637
+chr1	177874	.	C	T	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;DP=46;Dels=0.00;FS=2.569;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-0.816;QD=14.93;ReadPosRankSum=-0.860;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:25,21:46:99:715,0,849
+chr1	177924	.	T	G	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=0.467;QD=14.22;ReadPosRankSum=0.014;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,17:39:99:583,0,741
+chr1	177937	.	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=1.402;QD=13.92;ReadPosRankSum=-1.034;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,17:39:99:571,0,787
+chr1	177938	.	T	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=0.327;QD=14.73;ReadPosRankSum=-1.556;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,19:41:99:632,0,783
+chr1	177940	.	C	T	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;DP=44;Dels=0.00;FS=2.498;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=0;MQRankSum=-1.786;QD=17.81;ReadPosRankSum=1.645;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:21,23:44:99:812,0,687
+chr1	177955	.	T	C	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DP=48;Dels=0.00;FS=1.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=1.014;QD=20.06;ReadPosRankSum=0.178;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:20,28:48:99:991,0,659
+chr1	177959	.	T	G	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;DP=49;Dels=0.00;FS=1.137;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=0;MQRankSum=-0.359;QD=12.16;ReadPosRankSum=0.544;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:30,19:49:99:624,0,1063
+chr1	177983	.	A	G	1899.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=26.52;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1928,144,0
+chr1	177992	.	G	A	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=0.388;QD=17.00;ReadPosRankSum=0.466;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:25,25:50:99:878,0,780
+chr1	178064	.	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=-0.137;QD=14.80;ReadPosRankSum=-0.229;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:20,17:37:99:576,0,654
+chr1	178089	.	G	C	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DP=34;Dels=0.00;FS=3.270;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=1;MQRankSum=-0.777;QD=17.73;ReadPosRankSum=0.235;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,19:34:99:631,0,457
+chr1	178121	.	C	A	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DP=41;Dels=0.00;FS=1.294;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=1;MQRankSum=-1.035;QD=19.46;ReadPosRankSum=0.676;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:16,25:41:99:826,0,488
+chr1	178255	.	T	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.153;QD=11.21;ReadPosRankSum=1.458;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:19,13:32:99:387,0,613
+chr1	178259	.	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;DP=29;Dels=0.00;FS=1.449;HaplotypeScore=1.7338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.329;QD=13.89;ReadPosRankSum=1.206;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:16,13:29:99:431,0,537
+chr1	178261	.	T	A	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.7338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.460;QD=12.41;ReadPosRankSum=1.250;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:16,13:29:99:388,0,533
+chr1	178263	.	T	C	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;DP=30;Dels=0.00;FS=1.484;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.879;QD=13.29;ReadPosRankSum=1.549;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,13:30:99:427,0,582
+chr1	178287	.	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.465;QD=12.47;ReadPosRankSum=-0.575;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:14,11:25:99:340,0,480
+chr1	178289	.	G	C	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.205;QD=11.87;ReadPosRankSum=-0.263;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:14,10:24:99:313,0,481
+chr1	178299	.	A	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;DP=23;Dels=0.00;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.403;QD=11.42;ReadPosRankSum=-0.465;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:13,10:23:99:291,0,437
+chr1	178322	.	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;DP=26;Dels=0.00;FS=5.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.723;QD=14.53;ReadPosRankSum=-0.283;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:14,12:26:99:406,0,467
+chr1	178360	.	A	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DP=39;Dels=0.00;FS=9.536;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-1.169;QD=13.33;ReadPosRankSum=0.070;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:21,18:39:99:548,0,674
+chr1	178364	.	T	A	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;DP=42;Dels=0.00;FS=6.822;HaplotypeScore=1.9946;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=-1.639;QD=13.02;ReadPosRankSum=0.928;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:24,18:42:99:575,0,786
+chr1	178390	.	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=43.1047;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=36.62;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1169,87,0
+chr1	178393	.	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=32.4731;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=34.88;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1204,90,0
+chr1	178400	.	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=26.43;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:93:1209,93,0
+chr1	178402	.	A	C	1294.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=27.35;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1323,99,0
+chr1	178406	.	A	G	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=37;Dels=0.00;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQ0=0;MQRankSum=3.905;QD=16.45;ReadPosRankSum=0.228;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:18,19:37:99:637,0,616
+chr1	178418	.	C	T	1535.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=29.23;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1564,117,0
+chr1	178431	.	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=31.86;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1656,123,0
+chr1	178470	.	C	T	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DP=34;Dels=0.00;FS=2.928;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=-2.467;QD=17.46;ReadPosRankSum=-1.570;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:16,18:34:99:622,0,545
+chr1	178476	.	G	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-2.884;QD=8.63;ReadPosRankSum=1.078;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,8:25:99:244,0,611
+chr1	178477	.	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;DP=26;Dels=0.00;FS=1.596;HaplotypeScore=1.9951;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=-2.910;QD=9.80;ReadPosRankSum=0.701;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,9:26:99:283,0,607
+chr1	178478	.	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.9951;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=0;MQRankSum=-3.466;QD=8.11;ReadPosRankSum=1.311;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,8:25:99:231,0,607
+chr1	178481	.	A	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=57.76;MQ0=0;MQRankSum=-3.408;QD=8.63;ReadPosRankSum=1.486;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,8:25:99:244,0,606
+chr1	178485	.	T	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.9989;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-2.540;QD=11.53;ReadPosRankSum=0.329;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,11:28:99:351,0,575
+chr1	178493	.	T	C	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-2.900;QD=12.23;ReadPosRankSum=1.207;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:18,12:30:99:395,0,593
+chr1	178499	.	T	C	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=58.14;MQ0=0;MQRankSum=-1.630;QD=12.23;ReadPosRankSum=1.503;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:18,12:30:99:395,0,603
+chr1	178504	.	A	G	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;DP=28;Dels=0.00;FS=1.527;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-2.019;QD=13.17;ReadPosRankSum=0.998;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:16,12:28:99:397,0,533
+chr1	178548	.	T	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=-2.451;QD=11.14;ReadPosRankSum=-0.975;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:16,10:26:99:318,0,550
+chr1	178628	.	A	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.831;DP=38;Dels=0.00;FS=1.378;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.44;MQ0=0;MQRankSum=-1.015;QD=9.68;ReadPosRankSum=0.708;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:25,13:38:99:396,0,801
+chr1	178641	.	T	C	1162.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.07;MQ0=0;QD=31.81;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1191,93,0
+chr1	178645	.	G	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DP=31;Dels=0.00;FS=1.525;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.35;MQ0=0;MQRankSum=-0.152;QD=7.54;ReadPosRankSum=-0.457;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,9:31:99:262,0,672
+chr1	178672	.	T	C	271.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;QD=27.18;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:24:300,24,0
+chr1	178673	.	T	C	269.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;QD=26.98;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:24:298,24,0
+chr1	178709	.	G	A	304.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.04;MQ0=3;QD=19.05;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:30:333,30,0
+chr1	178719	.	T	C	176.84	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=3;QD=14.74;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:18:205,18,0
+chr1	178740	.	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DP=26;Dels=0.00;FS=6.166;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=11;MQRankSum=-1.408;QD=1.41;ReadPosRankSum=-0.674;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:18,8:26:65:65,0,324
+chr1	178796	.	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;DP=25;Dels=0.00;FS=6.726;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.15;MQ0=9;MQRankSum=0.404;QD=2.11;ReadPosRankSum=2.153;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,10:25:81:81,0,383
+chr1	178979	.	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.40;MQ0=0;MQRankSum=-0.286;QD=12.25;ReadPosRankSum=-0.041;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:10,9:19:99:261,0,334
+chr1	179063	.	T	A	690.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.16;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:54:719,54,0
+chr1	179198	.	A	G	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;DP=40;Dels=0.00;FS=9.838;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.25;MQ0=3;MQRankSum=4.522;QD=12.94;ReadPosRankSum=2.437;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:24,16:40:99:546,0,642
+chr1	179200	.	A	T	1439.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=3;QD=28.36;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1468,108,0
+chr1	179320	.	C	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=48;Dels=0.00;FS=4.336;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=-0.475;QD=15.77;ReadPosRankSum=0.578;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:25,23:48:99:785,0,835
+chr1	179364	.	T	G	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DP=58;Dels=0.00;FS=7.156;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=1.284;QD=17.29;ReadPosRankSum=0.801;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:28,30:58:99:1031,0,933
+chr1	179397	.	G	T	2003.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=29.19;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2032,147,0
+chr1	179511	.	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DP=55;Dels=0.00;FS=1.064;HaplotypeScore=11.7849;MLEAC=1;MLEAF=0.500;MQ=58.61;MQ0=0;MQRankSum=1.179;QD=14.23;ReadPosRankSum=1.655;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:31,24:55:99:811,0,1053
+chr1	179518	.	C	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=11.7849;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=0.855;QD=5.68;ReadPosRankSum=-0.078;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:39,12:51:99:318,0,1406
+chr1	179542	.	C	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;DP=59;Dels=0.00;FS=2.644;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.05;MQ0=0;MQRankSum=2.112;QD=5.64;ReadPosRankSum=-0.814;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:46,13:59:99:361,0,1612
+chr1	179564	.	C	T	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;DP=67;Dels=0.00;FS=6.477;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=54.15;MQ0=0;MQRankSum=-3.831;QD=16.70;ReadPosRankSum=-0.332;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:33,34:67:99:1147,0,1135
+chr1	179583	.	T	C	2571.77	.	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=33.16;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2600,193,0
+chr1	179617	.	A	T	2299.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=1.392;QD=28.69;ReadPosRankSum=0.085;EFF=UPSTREAM(MODIFIER||||Cc01g00160|mRNA||GSCOCT00012418001|),UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:1,60:61:99:2328,144,0
+chr1	179762	.	G	A	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;DP=51;Dels=0.00;FS=1.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQ0=0;MQRankSum=-1.618;QD=18.31;ReadPosRankSum=-0.407;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:23,28:51:99:962,0,770
+chr1	179884	.	G	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;DP=28;Dels=0.00;FS=4.028;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.47;MQ0=0;MQRankSum=-1.658;QD=11.03;ReadPosRankSum=0.184;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,13:28:99:337,0,516
+chr1	179951	.	C	T	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;DP=48;Dels=0.00;FS=2.471;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=61.42;MQ0=0;MQRankSum=-2.488;QD=11.47;ReadPosRankSum=-0.021;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:29,19:48:99:579,0,987
+chr1	180063	.	G	T	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5225;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-0.238;QD=18.63;ReadPosRankSum=-0.015;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:27,33:60:99:1146,0,891
+chr1	180136	.	T	A	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-2.350;QD=16.88;ReadPosRankSum=-0.012;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:20,23:43:99:754,0,646
+chr1	180164	.	C	T	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;DP=47;Dels=0.00;FS=2.546;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=0.075;QD=14.02;ReadPosRankSum=1.546;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:687,0,853
+chr1	180372	.	A	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;DP=38;Dels=0.00;FS=4.887;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=-1.285;QD=16.26;ReadPosRankSum=0.671;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:19,19:38:99:646,0,633
+chr1	180419	.	G	T	1311.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=8.9974;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=32.14;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1340,102,0
+chr1	180460	.	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=1;QD=29.16;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1408,105,0
+chr1	180463	.	T	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;DP=35;Dels=0.00;FS=1.423;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=1;MQRankSum=2.273;QD=15.36;ReadPosRankSum=-0.517;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:18,17:35:99:566,0,578
+chr1	180470	.	G	C	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DP=36;Dels=0.00;FS=1.373;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=1;MQRankSum=3.571;QD=16.24;ReadPosRankSum=-1.604;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,18:36:99:613,0,506
+chr1	180531	.	A	C	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=1;MQRankSum=0.486;QD=16.20;ReadPosRankSum=-0.847;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,17:34:99:579,0,522
+chr1	180557	.	C	G	1180.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=1;QD=32.27;EFF=UPSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1209,90,0
+chr1	180708	.	G	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DP=24;Dels=0.00;FS=4.269;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-2.223;QD=24.12;ReadPosRankSum=0.953;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGt/aAt|S43N|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_180581_180872)	GT:AD:DP:GQ:PL	0/1:7,17:24:99:607,0,206
+chr1	180728	.	A	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-0.437;QD=9.58;ReadPosRankSum=-0.489;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agg/Ggg|R50G|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_180581_180872)	GT:AD:DP:GQ:PL	0/1:18,9:27:99:287,0,626
+chr1	180746	.	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=31.29;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cct/Tct|P56S|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_180581_180872)	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1126,90,0
+chr1	180749	.	T	C	1103.77	.	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=26.57;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgt/Cgt|C57R|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_180581_180872)	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1132,87,0
+chr1	180758	.	C	T	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DP=25;Dels=0.00;FS=13.757;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=-0.027;QD=12.87;ReadPosRankSum=1.068;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctt/Ttt|L60F|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_180581_180872)	GT:AD:DP:GQ:PL	0/1:14,11:25:99:350,0,458
+chr1	181012	.	A	G	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.6617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.626;QD=23.03;ReadPosRankSum=-0.542;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:9,20:29:99:696,0,216
+chr1	181024	.	C	A	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.742;QD=20.41;ReadPosRankSum=1.506;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:11,18:29:99:620,0,319
+chr1	181102	.	T	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;DP=33;Dels=0.00;FS=3.837;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.862;QD=17.27;ReadPosRankSum=0.560;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,18:33:99:598,0,487
+chr1	181156	.	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=0.560;QD=12.49;ReadPosRankSum=-0.429;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:12,10:22:99:303,0,376
+chr1	181173	.	A	C	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;DP=15;Dels=0.00;FS=3.256;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.59;MQ0=0;MQRankSum=0.884;QD=11.45;ReadPosRankSum=-0.648;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:9,6:15:99:200,0,268
+chr1	181194	.	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;DP=19;Dels=0.00;FS=2.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=0;MQRankSum=2.149;QD=7.51;ReadPosRankSum=-2.850;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:13,6:19:99:171,0,426
+chr1	181230	.	T	A	1286.77	.	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=31.97;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1315,96,0
+chr1	181244	.	G	T	1304.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=27.50;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1333,99,0
+chr1	181276	.	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=-0.632;QD=11.19;ReadPosRankSum=-0.905;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,13:36:99:431,0,793
+chr1	181325	.	G	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;DP=23;Dels=0.00;FS=2.299;HaplotypeScore=1.8279;MLEAC=1;MLEAF=0.500;MQ=56.80;MQ0=0;MQRankSum=-1.711;QD=9.16;ReadPosRankSum=0.678;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,8:23:99:239,0,509
+chr1	181330	.	A	G	904.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.8279;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=31.12;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:72:933,72,0
+chr1	181337	.	A	G	906.77	.	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=29.13;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,25:25:72:935,72,0
+chr1	181340	.	G	A	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=56.31;MQ0=0;MQRankSum=-1.259;QD=11.87;ReadPosRankSum=-0.205;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:14,10:24:99:313,0,471
+chr1	181363	.	C	T	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.002;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.15;MQ0=0;MQRankSum=-2.743;QD=9.21;ReadPosRankSum=0.936;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,8:23:99:240,0,515
+chr1	181373	.	C	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;DP=23;Dels=0.00;FS=3.982;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.15;MQ0=0;MQRankSum=-2.033;QD=8.99;ReadPosRankSum=0.484;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:15,8:23:99:235,0,521
+chr1	181378	.	A	G	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;DP=23;Dels=0.00;FS=4.200;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.88;MQ0=0;MQRankSum=3.647;QD=19.64;ReadPosRankSum=-1.130;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:8,15:23:99:480,0,235
+chr1	181389	.	T	G	653.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=30.52;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:54:682,54,0
+chr1	181394	.	T	C	708.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=29.42;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:57:737,57,0
+chr1	181400	.	T	C	686.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=29.72;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:54:715,54,0
+chr1	181432	.	C	T	663.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=28.65;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:51:692,51,0
+chr1	181520	.	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;DP=35;Dels=0.00;FS=3.290;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.29;MQ0=2;MQRankSum=-3.125;QD=7.62;ReadPosRankSum=1.141;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:21,14:35:99:295,0,721
+chr1	181569	.	C	T	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DP=41;Dels=0.00;FS=11.992;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-0.807;QD=11.26;ReadPosRankSum=0.463;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:24,17:41:99:490,0,840
+chr1	181583	.	T	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;DP=39;Dels=0.00;FS=8.484;HaplotypeScore=1.9998;MLEAC=1;MLEAF=0.500;MQ=54.83;MQ0=0;MQRankSum=-1.317;QD=12.25;ReadPosRankSum=1.827;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:22,17:39:99:506,0,762
+chr1	181595	.	G	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;DP=37;Dels=0.00;FS=9.049;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.78;MQ0=0;MQRankSum=-1.322;QD=14.13;ReadPosRankSum=0.319;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:19,18:37:99:551,0,655
+chr1	181616	.	A	G	1243.77	.	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=26.17;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1272,96,0
+chr1	181649	.	A	G	871.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=28.35;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:72:900,72,0
+chr1	181678	.	C	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=11.4067;MLEAC=1;MLEAF=0.500;MQ=54.06;MQ0=0;MQRankSum=-0.467;QD=4.27;ReadPosRankSum=2.335;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:11,3:14:88:88,0,315
+chr1	181750	.	T	C	1735.77	.	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=61.04;MQ0=0;QD=29.40;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tTa/tCa|L98S|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1764,132,0
+chr1	181932	.	T	C	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;DP=42;Dels=0.00;FS=2.883;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=0;MQRankSum=-0.630;QD=20.26;ReadPosRankSum=0.577;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgt/Cgt|C159R|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	0/1:15,27:42:99:879,0,440
+chr1	182026	.	T	G	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=37;Dels=0.00;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQ0=0;MQRankSum=1.966;QD=13.51;ReadPosRankSum=0.625;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTc/cGc|L190R|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	0/1:20,17:37:99:528,0,608
+chr1	182058	.	G	C	1193.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=29.48;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gta/Cta|V201L|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1222,93,0
+chr1	182100	.	A	G	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;DP=37;Dels=0.00;FS=16.118;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQ0=0;MQRankSum=2.302;QD=20.29;ReadPosRankSum=-0.955;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aga/Gga|R215G|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	0/1:14,23:37:99:779,0,366
+chr1	182108	.	G	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;DP=39;Dels=0.00;FS=10.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=-0.794;QD=9.92;ReadPosRankSum=0.188;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcG/tcA|S217|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	0/1:24,15:39:99:415,0,775
+chr1	182195	.	C	A	1439.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=30.91;EFF=SYNONYMOUS_CODING(LOW|SILENT|atC/atA|I246|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1468,111,0
+chr1	182198	.	G	A	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.182;QD=17.62;ReadPosRankSum=0.348;EFF=SYNONYMOUS_CODING(LOW|SILENT|ttG/ttA|L247|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	0/1:16,19:35:99:645,0,523
+chr1	182199	.	A	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.475;QD=17.35;ReadPosRankSum=0.792;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Atg/Ttg|M248L|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	0/1:17,19:36:99:653,0,531
+chr1	182231	.	G	A	1226.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=29.57;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcG/gcA|A258|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	1/1:0,33:33:96:1255,96,0
+chr1	182291	.	A	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;DP=43;Dels=0.00;FS=26.079;HaplotypeScore=1.6650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.032;QD=9.86;ReadPosRankSum=-0.828;EFF=SYNONYMOUS_CODING(LOW|SILENT|gtA/gtG|V278|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_181750_182298)	GT:AD:DP:GQ:PL	0/1:28,15:43:99:452,0,940
+chr1	182317	.	C	T	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;DP=43;Dels=0.00;FS=22.687;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=-0.239;QD=11.09;ReadPosRankSum=1.018;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:27,16:43:99:505,0,912
+chr1	182395	.	C	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;DP=36;Dels=0.00;FS=3.014;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.11;MQ0=0;MQRankSum=0.462;QD=13.88;ReadPosRankSum=-2.786;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:20,16:36:99:528,0,655
+chr1	182404	.	G	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=42;Dels=0.00;FS=1.218;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=0;MQRankSum=0.834;QD=17.09;ReadPosRankSum=0.430;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),SPLICE_SITE_ACCEPTOR(HIGH||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:19,23:42:99:746,0,627
+chr1	182424	.	G	A	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DP=47;Dels=0.00;FS=1.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=0.738;QD=17.82;ReadPosRankSum=0.952;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcG/gcA|A287|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_182405_182607)	GT:AD:DP:GQ:PL	0/1:21,26:47:99:866,0,703
+chr1	182545	.	G	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.911;DP=38;Dels=0.00;FS=1.257;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=0.986;QD=11.26;ReadPosRankSum=-1.015;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtt/Att|V328I|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_182405_182607)	GT:AD:DP:GQ:PL	0/1:23,15:38:99:456,0,764
+chr1	182610	.	A	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.70;MQ0=0;MQRankSum=-2.012;QD=10.40;ReadPosRankSum=1.873;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:19,15:34:99:382,0,506
+chr1	182637	.	T	C	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;DP=36;Dels=0.00;FS=8.730;HaplotypeScore=2.3122;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=0;MQRankSum=-2.372;QD=17.99;ReadPosRankSum=1.735;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:16,20:36:99:676,0,448
+chr1	182641	.	T	C	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DP=38;Dels=0.00;FS=13.898;HaplotypeScore=1.7338;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=0;MQRankSum=-2.511;QD=14.86;ReadPosRankSum=2.365;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:19,19:38:99:593,0,579
+chr1	182646	.	A	G,T	974.29	.	AC=1,1;AF=0.500,0.500;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.03;MQ0=0;QD=27.06;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/2:0,18,18:36:99:1162,642,594,520,0,465
+chr1	182648	.	A	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.525;DP=35;Dels=0.00;FS=17.460;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.91;MQ0=0;MQRankSum=-2.723;QD=15.34;ReadPosRankSum=2.228;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:18,17:35:99:565,0,436
+chr1	182657	.	T	C	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DP=46;Dels=0.00;FS=7.638;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=54.60;MQ0=0;MQRankSum=-3.778;QD=18.06;ReadPosRankSum=-1.934;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:17,29:46:99:859,0,438
+chr1	182668	.	T	C	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.9516;MLEAC=1;MLEAF=0.500;MQ=54.15;MQ0=0;MQRankSum=-3.805;QD=14.92;ReadPosRankSum=-0.685;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:19,31:50:99:774,0,262
+chr1	182674	.	A	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=30.8083;MLEAC=1;MLEAF=0.500;MQ=54.48;MQ0=0;MQRankSum=-4.923;QD=15.46;ReadPosRankSum=-1.147;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:18,27:47:99:755,0,282
+chr1	182714	.	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=25.68;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2237,172,0
+chr1	182756	.	A	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;DP=40;Dels=0.00;FS=6.474;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=-0.783;QD=5.17;ReadPosRankSum=0.817;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:30,9:40:99:235,0,1016
+chr1	182758	.	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;DP=40;Dels=0.00;FS=9.072;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=-1.078;QD=5.67;ReadPosRankSum=0.672;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:30,10:40:99:255,0,986
+chr1	182775	.	T	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DP=44;Dels=0.00;FS=3.185;HaplotypeScore=2.9961;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=0.227;QD=11.61;ReadPosRankSum=-2.232;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:26,18:44:99:539,0,817
+chr1	182800	.	A	T	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DP=41;Dels=0.00;FS=1.435;HaplotypeScore=1.6650;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=1.552;QD=14.73;ReadPosRankSum=0.039;EFF=INTRON(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|)	GT:AD:DP:GQ:PL	0/1:21,20:41:99:632,0,657
+chr1	182818	.	G	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=-1.464;QD=16.27;ReadPosRankSum=1.320;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gct/Tct|A353S|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_182806_183123)	GT:AD:DP:GQ:PL	0/1:15,18:33:99:565,0,472
+chr1	182821	.	T	G	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=59.32;MQ0=0;MQRankSum=-1.284;QD=15.90;ReadPosRankSum=1.392;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tct/Gct|S354A|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_182806_183123)	GT:AD:DP:GQ:PL	0/1:15,18:33:99:553,0,504
+chr1	182977	.	A	G	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=61;Dels=0.00;FS=1.012;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=-0.470;QD=13.67;ReadPosRankSum=1.411;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Atc/Gtc|I406V|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_182806_183123)	GT:AD:DP:GQ:PL	0/1:33,28:61:99:862,0,1096
+chr1	183001	.	T	C	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;DP=56;Dels=0.00;FS=2.198;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=1.958;QD=15.73;ReadPosRankSum=0.156;EFF=SYNONYMOUS_CODING(LOW|SILENT|Ttg/Ctg|L414|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_182806_183123)	GT:AD:DP:GQ:PL	0/1:28,28:56:99:909,0,927
+chr1	183099	.	A	G	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=-1.462;QD=15.10;ReadPosRankSum=-1.154;EFF=SYNONYMOUS_CODING(LOW|SILENT|ttA/ttG|L446|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_182806_183123),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:22,24:46:99:723,0,679
+chr1	183112	.	A	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=47;Dels=0.00;FS=2.546;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-1.631;QD=13.93;ReadPosRankSum=-1.738;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agt/Tgt|S451C|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_182806_183123),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:25,22:47:99:683,0,847
+chr1	183122	.	A	G	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;DP=49;Dels=0.00;FS=6.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=-0.010;QD=14.34;ReadPosRankSum=-1.538;EFF=SYNONYMOUS_STOP(LOW|SILENT|tAa/tGa|*454|Cc01g00170|mRNA||GSCOCT00012417001|Exon_chr1_182806_183123),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:731,0,933
+chr1	183134	.	G	C	1853.77	.	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=19.9966;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=28.80;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1882,141,0
+chr1	183164	.	G	A	1985.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.03;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2014,153,0
+chr1	183180	.	A	T	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DP=53;Dels=0.00;FS=2.623;HaplotypeScore=2.7335;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=-0.670;QD=13.92;ReadPosRankSum=0.045;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:29,24:53:99:766,0,944
+chr1	183192	.	C	T	1829.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.4532;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=33.88;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1858,150,0
+chr1	183206	.	C	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;DP=47;Dels=0.00;FS=2.919;HaplotypeScore=3.7882;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=0.613;QD=12.29;ReadPosRankSum=0.549;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:27,20:47:99:606,0,947
+chr1	183210	.	C	A	1916.77	.	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7885;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=30.28;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1945,147,0
+chr1	183264	.	C	G	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DP=38;Dels=0.00;FS=1.237;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-2.646;QD=15.47;ReadPosRankSum=0.073;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:20,18:38:99:616,0,690
+chr1	183410	.	C	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.9453;MLEAC=1;MLEAF=0.500;MQ=55.82;MQ0=0;MQRankSum=-1.739;QD=4.72;ReadPosRankSum=-2.268;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:26,7:33:99:184,0,765
+chr1	183443	.	G	A	1009.77	.	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=27.21;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1038,81,0
+chr1	183460	.	C	T	838.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=35.23;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:867,69,0
+chr1	183464	.	G	A	858.77	.	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=29.99;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,23:23:69:887,69,0
+chr1	183493	.	C	A	473.77	.	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=26.98;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,13:13:39:502,39,0
+chr1	183509	.	A	G	339.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=1;QD=28.31;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:30:368,30,0
+chr1	183531	.	G	A	267.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=1;QD=26.78;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:24:296,24,0
+chr1	183542	.	T	C	237.8	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=6.6549;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=1;QD=23.78;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:21:266,21,0
+chr1	183564	.	G	A	265.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=1;QD=24.16;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:24:294,24,0
+chr1	183568	.	A	G	273.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=1;QD=24.89;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:24:302,24,0
+chr1	183569	.	C	T	272.78	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=1;QD=24.80;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:24:301,24,0
+chr1	183580	.	G	T	378.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=1;QD=23.67;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:33:407,33,0
+chr1	183601	.	C	T	413.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=27.58;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:36:442,36,0
+chr1	183602	.	G	C	414.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=27.65;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:36:443,36,0
+chr1	183606	.	C	T	458.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=25.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:39:487,39,0
+chr1	183618	.	C	T	490.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;QD=25.83;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:42:519,42,0
+chr1	183623	.	A	G	484.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=1;QD=24.24;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:42:513,42,0
+chr1	183645	.	A	G	560.77	.	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=1;QD=26.70;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,21:21:48:589,48,0
+chr1	183881	.	T	C	84.03	.	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.25;MQ0=1;QD=14.01;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,6:6:12:112,12,0
+chr1	184039	.	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;DP=17;Dels=0.00;FS=11.761;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=14.06;MQ0=10;MQRankSum=1.300;QD=3.87;ReadPosRankSum=1.754;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:12,5:17:39:94,0,39
+chr1	184048	.	G	A	68.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=14;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.98;MQ0=8;MQRankSum=0.000;QD=4.91;ReadPosRankSum=1.380;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:8,6:14:25:97,0,25
+chr1	184262	.	G	A	35.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=17.87;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:63,6,0
+chr1	184325	.	T	A	368.77	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.79;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
+chr1	184366	.	G	T	16.86	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;DP=7;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.95;MQ0=0;MQRankSum=-1.495;QD=2.41;ReadPosRankSum=1.495;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:5,2:7:45:45,0,172
+chr1	184384	.	T	A	250.8	.	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=27.87;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,9:9:21:279,21,0
+chr1	184401	.	T	C	297.78	.	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=29.78;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,10:10:24:326,24,0
+chr1	184419	.	C	T	459.77	.	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=32.84;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,14:14:36:488,36,0
+chr1	184437	.	A	C	589.77	.	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=34.69;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,17:17:45:618,45,0
+chr1	184457	.	T	A	615.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=33.68;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:48:644,48,0
+chr1	184511	.	A	G	177.9	.	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.08;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
+chr1	184520	.	T	C	126.03	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.51;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
+chr1	184712	.	A	G	14.68	LowQual	AC=2;AF=1.00;AN=2;BaseQRankSum=0.804;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.76;MQ0=5;MQRankSum=0.804;QD=2.10;ReadPosRankSum=0.804;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:6,1:7:3:41,3,0
+chr1	184812	.	C	T	293.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=1;MQRankSum=1.849;QD=22.60;ReadPosRankSum=-2.589;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:4,9:13:24:322,24,0
+chr1	184813	.	G	A	293.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.382;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=1;MQRankSum=2.262;QD=22.60;ReadPosRankSum=-2.262;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:4,8:13:24:322,24,0
+chr1	184816	.	T	C	293.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.106;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=1;MQRankSum=2.262;QD=22.60;ReadPosRankSum=-0.978;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:3,8:13:24:322,24,0
+chr1	184870	.	C	G	77.28	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;QD=25.76;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:9:105,9,0
+chr1	184877	.	A	C	110.03	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;QD=27.51;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
+chr1	184924	.	T	C	381.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=34.71;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:33:410,33,0
+chr1	184928	.	A	G	414.77	.	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=34.56;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,12:12:36:443,36,0
+chr1	184947	.	T	C	553.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=29.19;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:45:582,45,0
+chr1	184967	.	G	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DP=26;Dels=0.00;FS=4.435;HaplotypeScore=2.6549;MLEAC=1;MLEAF=0.500;MQ=52.68;MQ0=0;MQRankSum=-3.139;QD=6.91;ReadPosRankSum=-2.639;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,8:26:99:208,0,643
+chr1	184971	.	G	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DP=27;Dels=0.00;FS=6.965;HaplotypeScore=2.6549;MLEAC=1;MLEAF=0.500;MQ=52.77;MQ0=0;MQRankSum=-3.060;QD=8.84;ReadPosRankSum=-1.672;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,9:27:99:267,0,627
+chr1	184992	.	C	A	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;DP=30;Dels=0.00;FS=3.779;HaplotypeScore=7.2988;MLEAC=1;MLEAF=0.500;MQ=55.33;MQ0=0;MQRankSum=-3.443;QD=10.59;ReadPosRankSum=0.344;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:19,11:30:99:346,0,566
+chr1	184999	.	G	A	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;DP=36;Dels=0.00;FS=2.798;HaplotypeScore=2.3001;MLEAC=1;MLEAF=0.500;MQ=57.43;MQ0=0;MQRankSum=-2.789;QD=16.38;ReadPosRankSum=-2.345;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:17,19:36:99:618,0,532
+chr1	185038	.	A	T	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;DP=37;Dels=0.00;FS=5.015;HaplotypeScore=1.9983;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-0.820;QD=19.32;ReadPosRankSum=2.088;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:15,22:37:99:743,0,477
+chr1	185039	.	T	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DP=39;Dels=0.00;FS=4.649;HaplotypeScore=1.9983;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=0.736;QD=11.46;ReadPosRankSum=-1.833;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:24,15:39:99:475,0,785
+chr1	185068	.	A	T	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;DP=40;Dels=0.00;FS=6.983;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=1.559;QD=19.29;ReadPosRankSum=0.657;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:17,23:40:99:800,0,540
+chr1	185070	.	C	G	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;DP=41;Dels=0.00;FS=9.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=0.801;QD=18.68;ReadPosRankSum=0.828;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,23:41:99:794,0,571
+chr1	185084	.	C	A	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;DP=41;Dels=0.00;FS=6.934;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=0.781;QD=18.95;ReadPosRankSum=-0.966;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:17,24:41:99:805,0,519
+chr1	185087	.	G	A	1558.77	.	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=32.69;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1587,120,0
+chr1	185096	.	A	G	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=37;Dels=0.00;FS=5.209;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=0.383;QD=13.32;ReadPosRankSum=1.364;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,16:37:99:521,0,697
+chr1	185113	.	T	C	1279.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=28.25;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1308,99,0
+chr1	185114	.	G	A	1207.77	.	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=33.43;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1236,93,0
+chr1	185129	.	C	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;DP=36;Dels=0.00;FS=2.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=0.459;QD=15.88;ReadPosRankSum=0.111;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,18:36:99:600,0,584
+chr1	185138	.	C	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;DP=37;Dels=0.00;FS=1.289;HaplotypeScore=14.8277;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=1.595;QD=14.70;ReadPosRankSum=-0.228;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:19,18:37:99:572,0,645
+chr1	185141	.	G	A	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=14.8277;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-1.139;QD=15.31;ReadPosRankSum=0.347;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,17:35:99:564,0,590
+chr1	185145	.	G	T	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-1.139;QD=14.36;ReadPosRankSum=0.886;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,15:33:99:502,0,598
+chr1	185186	.	C	T	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;DP=37;Dels=0.00;FS=1.280;HaplotypeScore=19.3302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.960;QD=16.40;ReadPosRankSum=0.137;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:17,20:37:99:635,0,578
+chr1	185222	.	T	A	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;DP=45;Dels=0.00;FS=1.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=-1.101;QD=16.48;ReadPosRankSum=1.828;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:22,23:45:99:770,0,755
+chr1	185241	.	A	G	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;DP=48;Dels=0.00;FS=2.415;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.103;QD=15.31;ReadPosRankSum=0.227;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:25,23:48:99:763,0,865
+chr1	185245	.	G	A	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;DP=48;Dels=0.00;FS=2.415;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.619;QD=15.29;ReadPosRankSum=-0.433;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:25,23:48:99:762,0,868
+chr1	185259	.	C	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DP=49;Dels=0.00;FS=2.460;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.136;QD=13.95;ReadPosRankSum=-0.915;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:712,0,900
+chr1	185264	.	T	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;DP=52;Dels=0.00;FS=1.072;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=-1.606;QD=14.51;ReadPosRankSum=-1.404;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:28,24:52:99:783,0,962
+chr1	185289	.	C	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.8940;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-1.022;QD=12.65;ReadPosRankSum=-0.118;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:27,20:47:99:623,0,933
+chr1	185299	.	A	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=16.4921;MLEAC=1;MLEAF=0.500;MQ=58.05;MQ0=0;MQRankSum=-2.184;QD=11.52;ReadPosRankSum=0.752;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:26,18:44:99:535,0,917
+chr1	185346	.	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DP=33;Dels=0.00;FS=8.695;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=-3.050;QD=9.45;ReadPosRankSum=1.815;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,12:33:99:340,0,747
+chr1	185347	.	A	G	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DP=33;Dels=0.00;FS=11.504;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=-2.826;QD=10.57;ReadPosRankSum=1.890;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,12:33:99:377,0,759
+chr1	185372	.	T	C	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;DP=29;Dels=0.00;FS=17.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.21;MQ0=0;MQRankSum=-4.382;QD=8.51;ReadPosRankSum=0.482;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:19,10:29:99:275,0,692
+chr1	185376	.	C	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;DP=28;Dels=0.00;FS=21.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-3.926;QD=5.49;ReadPosRankSum=1.804;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,7:28:99:182,0,778
+chr1	185383	.	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DP=28;Dels=0.00;FS=16.983;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-3.926;QD=4.24;ReadPosRankSum=0.584;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,7:28:99:147,0,783
+chr1	185387	.	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DP=28;Dels=0.00;FS=19.859;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-3.926;QD=4.81;ReadPosRankSum=0.212;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,7:28:99:163,0,736
+chr1	185394	.	A	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=27;Dels=0.00;FS=16.983;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.70;MQ0=0;MQRankSum=-3.703;QD=4.25;ReadPosRankSum=-0.846;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,6:27:99:143,0,783
+chr1	185401	.	T	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;DP=29;Dels=0.00;FS=15.529;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=0;MQRankSum=-3.742;QD=3.85;ReadPosRankSum=-0.673;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:23,6:29:99:140,0,846
+chr1	185407	.	C	T	19.81	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;DP=23;Dels=0.00;FS=6.628;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=-2.784;QD=0.86;ReadPosRankSum=-2.784;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:20,3:23:48:48,0,737
+chr1	185480	.	G	A	732.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=62.24;MQ0=0;QD=30.74;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:57:761,57,0
+chr1	185486	.	C	T	684.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=62.24;MQ0=0;QD=29.12;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:54:713,54,0
+chr1	185509	.	T	C	606.77	.	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=62.65;MQ0=0;QD=28.82;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,16:16:48:635,48,0
+chr1	185547	.	C	T	637.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.156;QD=24.50;ReadPosRankSum=1.349;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:1,17:18:14:666,14,0
+chr1	185642	.	A	T	574.77	.	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=28.90;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,15:15:45:603,45,0
+chr1	185689	.	A	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.58;MQ0=1;MQRankSum=-2.906;QD=7.24;ReadPosRankSum=-1.837;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:16,8:24:99:202,0,578
+chr1	185691	.	T	G	889.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=1;QD=27.49;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:69:918,69,0
+chr1	185717	.	A	G	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DP=33;Dels=0.00;FS=3.365;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.82;MQ0=1;MQRankSum=-1.880;QD=10.51;ReadPosRankSum=0.998;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:19,14:33:99:375,0,665
+chr1	185726	.	G	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DP=39;Dels=0.00;FS=4.887;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=57.32;MQ0=1;MQRankSum=-2.190;QD=15.22;ReadPosRankSum=0.234;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:19,20:39:99:622,0,634
+chr1	185747	.	A	T	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.36;MQ0=1;MQRankSum=-1.881;QD=20.81;ReadPosRankSum=-0.894;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:14,29:43:99:923,0,453
+chr1	185776	.	A	G	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.87;MQ0=1;MQRankSum=-1.287;QD=22.38;ReadPosRankSum=2.961;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:11,28:39:99:901,0,314
+chr1	185800	.	C	T	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.9825;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=1;MQRankSum=-0.406;QD=25.35;ReadPosRankSum=1.529;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:5,23:28:89:738,0,89
+chr1	185804	.	T	G	590.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DP=28;Dels=0.00;FS=8.073;HaplotypeScore=5.6476;MLEAC=1;MLEAF=0.500;MQ=49.66;MQ0=1;MQRankSum=1.135;QD=21.10;ReadPosRankSum=0.436;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:3,22:28:16:690,0,16
+chr1	185818	.	T	G	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DP=24;Dels=0.00;FS=2.570;HaplotypeScore=2.9824;MLEAC=1;MLEAF=0.500;MQ=47.71;MQ0=1;MQRankSum=1.176;QD=24.03;ReadPosRankSum=-0.852;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:4,20:24:53:605,0,53
+chr1	186025	.	A	C	17.84	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.026;QD=4.46;ReadPosRankSum=1.026;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:2,2:4:46:46,0,47
+chr1	186043	.	A	G	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;DP=38;Dels=0.00;FS=3.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.26;MQ0=5;MQRankSum=-1.963;QD=15.02;ReadPosRankSum=-2.900;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:19,19:38:99:599,0,549
+chr1	186058	.	T	A	1383.77	.	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=5;QD=34.59;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1412,105,0
+chr1	186081	.	A	G	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-0.474;QD=15.86;ReadPosRankSum=2.879;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:710,0,742
+chr1	186083	.	T	A	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DP=43;Dels=0.00;FS=1.177;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=0;MQRankSum=2.928;QD=16.48;ReadPosRankSum=-2.126;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,22:43:99:737,0,714
+chr1	186128	.	C	G	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;DP=39;Dels=0.00;FS=1.390;HaplotypeScore=19.8272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.043;QD=12.22;ReadPosRankSum=-0.757;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:23,16:39:99:505,0,805
+chr1	186204	.	A	T	1634.77	.	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=7;QD=30.84;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1663,126,0
+chr1	186205	.	G	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;DP=52;Dels=0.00;FS=2.716;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=52.72;MQ0=7;MQRankSum=0.198;QD=8.55;ReadPosRankSum=-0.718;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:32,19:52:99:473,0,903
+chr1	186248	.	C	T	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DP=39;Dels=0.00;FS=2.991;HaplotypeScore=12.5646;MLEAC=1;MLEAF=0.500;MQ=51.44;MQ0=4;MQRankSum=-0.750;QD=13.92;ReadPosRankSum=0.283;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:19,20:39:99:571,0,491
+chr1	186252	.	T	C	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;DP=38;Dels=0.00;FS=1.412;HaplotypeScore=14.4976;MLEAC=1;MLEAF=0.500;MQ=52.11;MQ0=3;MQRankSum=-1.250;QD=14.41;ReadPosRankSum=0.383;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,20:38:99:576,0,472
+chr1	186263	.	T	C	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.915;DP=45;Dels=0.00;FS=1.264;HaplotypeScore=23.4286;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=1;MQRankSum=2.794;QD=10.37;ReadPosRankSum=-0.061;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:28,17:45:99:495,0,824
+chr1	186273	.	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;DP=50;Dels=0.00;FS=8.671;HaplotypeScore=22.6968;MLEAC=1;MLEAF=0.500;MQ=55.43;MQ0=1;MQRankSum=3.184;QD=12.62;ReadPosRankSum=1.495;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:29,21:50:99:659,0,894
+chr1	186302	.	T	C	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;DP=49;Dels=0.00;FS=5.993;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=0;MQRankSum=-0.254;QD=19.63;ReadPosRankSum=0.315;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:20,29:49:99:990,0,585
+chr1	186305	.	G	A	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;DP=45;Dels=0.00;FS=2.751;HaplotypeScore=2.8649;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.332;QD=18.73;ReadPosRankSum=-0.081;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,27:45:99:871,0,521
+chr1	186318	.	T	C	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.9982;MLEAC=1;MLEAF=0.500;MQ=56.94;MQ0=0;MQRankSum=2.087;QD=10.03;ReadPosRankSum=-0.213;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:34,19:53:99:560,0,1118
+chr1	186366	.	G	A	683.77	.	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=32.01;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,18:18:54:712,54,0
+chr1	186382	.	G	A	56.74	.	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=28.37;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
+chr1	186396	.	T	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;DP=18;Dels=0.00;FS=2.762;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=0;MQRankSum=-1.756;QD=22.10;ReadPosRankSum=-2.318;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:2,16:18:34:426,0,34
+chr1	186407	.	T	C	557.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=35.89;MQ0=0;MQRankSum=-1.909;QD=24.25;ReadPosRankSum=-2.346;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:2,21:23:20:586,0,20
+chr1	186440	.	C	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;DP=31;Dels=0.00;FS=19.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.71;MQ0=0;MQRankSum=3.153;QD=1.48;ReadPosRankSum=-2.740;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:27,4:31:74:74,0,835
+chr1	186449	.	C	A	1104.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=28.17;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1133,90,0
+chr1	186454	.	C	T	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;DP=34;Dels=0.00;FS=22.252;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.56;MQ0=0;MQRankSum=-3.817;QD=27.05;ReadPosRankSum=2.372;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:6,28:34:99:948,0,144
+chr1	186460	.	C	T	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;DP=32;Dels=0.00;FS=17.527;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=46.19;MQ0=0;MQRankSum=-3.790;QD=26.90;ReadPosRankSum=2.245;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:6,26:32:99:889,0,146
+chr1	186464	.	T	C	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;DP=34;Dels=0.00;FS=19.762;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=46.63;MQ0=0;MQRankSum=-4.046;QD=25.85;ReadPosRankSum=1.704;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:7,27:34:99:907,0,182
+chr1	186478	.	T	C	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;DP=25;Dels=0.00;FS=15.830;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=49.25;MQ0=0;MQRankSum=-3.990;QD=21.03;ReadPosRankSum=-0.379;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:8,17:25:99:554,0,243
+chr1	186480	.	A	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DP=25;Dels=0.00;FS=15.830;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=49.25;MQ0=0;MQRankSum=3.932;QD=8.51;ReadPosRankSum=1.194;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:17,8:25:99:241,0,553
+chr1	186483	.	C	T	883.77	.	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=31.70;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,24:24:72:912,72,0
+chr1	186485	.	A	G	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;DP=23;Dels=0.00;FS=12.352;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=-3.905;QD=20.47;ReadPosRankSum=-1.517;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:8,15:23:99:499,0,249
+chr1	186488	.	C	T	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;DP=23;Dels=0.00;FS=12.352;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=-3.905;QD=19.60;ReadPosRankSum=-1.194;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:8,15:23:99:479,0,255
+chr1	186496	.	G	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;DP=23;Dels=0.00;FS=12.352;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=-3.905;QD=20.16;ReadPosRankSum=-1.130;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:8,15:23:99:492,0,235
+chr1	186499	.	T	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=23;Dels=0.00;FS=12.352;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=-3.905;QD=20.12;ReadPosRankSum=-0.484;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:8,15:23:99:491,0,247
+chr1	186500	.	T	C	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;DP=23;Dels=0.00;FS=12.352;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=-3.905;QD=20.08;ReadPosRankSum=-0.549;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:8,15:23:99:490,0,245
+chr1	186522	.	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.47;MQ0=0;MQRankSum=3.201;QD=8.57;ReadPosRankSum=0.307;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:13,6:19:99:191,0,365
+chr1	186527	.	T	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;DP=18;Dels=0.00;FS=2.762;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.08;MQ0=0;MQRankSum=-3.138;QD=14.60;ReadPosRankSum=0.140;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:6,12:18:99:291,0,198
+chr1	186553	.	C	T	134.03	.	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=33.51;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
+chr1	186562	.	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DP=12;Dels=0.00;FS=6.818;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.72;MQ0=0;MQRankSum=2.637;QD=8.15;ReadPosRankSum=0.825;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:8,4:12:99:126,0,256
+chr1	186565	.	C	T	383.77	.	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=34.89;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,11:11:33:412,33,0
+chr1	186581	.	C	T	24.78	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;DP=11;Dels=0.00;FS=3.310;HaplotypeScore=1.7987;MLEAC=1;MLEAF=0.500;MQ=42.26;MQ0=0;MQRankSum=2.003;QD=2.25;ReadPosRankSum=2.003;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:9,2:11:53:53,0,266
+chr1	186587	.	A	G	52.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;MQRankSum=0.736;QD=17.58;ReadPosRankSum=0.736;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:1,2:3:6:80,6,0
+chr1	186588	.	T	C	53.74	.	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=17.91;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,3:3:6:81,6,0
+chr1	186590	.	T	C	44.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.02;MQ0=0;MQRankSum=0.736;QD=14.93;ReadPosRankSum=0.736;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:1,2:3:26:73,0,26
+chr1	186605	.	C	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DP=28;Dels=0.00;FS=12.091;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.49;MQ0=0;MQRankSum=3.575;QD=20.53;ReadPosRankSum=-3.810;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:11,17:28:99:603,0,347
+chr1	186611	.	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DP=29;Dels=0.00;FS=8.572;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.96;MQ0=0;MQRankSum=-3.843;QD=11.44;ReadPosRankSum=2.854;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,11:29:99:360,0,648
+chr1	186614	.	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;DP=29;Dels=0.00;FS=8.572;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.96;MQ0=0;MQRankSum=-3.798;QD=11.72;ReadPosRankSum=2.944;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:18,11:29:99:368,0,655
+chr1	186624	.	C	T	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;DP=34;Dels=0.00;FS=11.031;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=57.15;MQ0=0;MQRankSum=-4.146;QD=11.32;ReadPosRankSum=2.055;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,13:34:99:413,0,758
+chr1	186629	.	C	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;DP=38;Dels=0.00;FS=8.924;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=0;MQRankSum=4.390;QD=20.20;ReadPosRankSum=-0.695;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:16,22:38:99:796,0,505
+chr1	186638	.	G	A	1706.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.81;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1735,129,0
+chr1	186658	.	C	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DP=53;Dels=0.00;FS=6.435;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.98;MQ0=0;MQRankSum=-3.592;QD=11.94;ReadPosRankSum=-1.373;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:32,21:53:99:661,0,1102
+chr1	186661	.	C	T	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;DP=54;Dels=0.00;FS=6.487;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=0;MQRankSum=-3.283;QD=12.29;ReadPosRankSum=-1.276;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:32,22:54:99:692,0,1121
+chr1	186663	.	C	T	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DP=57;Dels=0.00;FS=8.033;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=3.964;QD=18.86;ReadPosRankSum=1.552;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:25,32:57:99:1103,0,821
+chr1	186666	.	G	A	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;DP=56;Dels=0.00;FS=6.180;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=3.767;QD=19.30;ReadPosRankSum=0.538;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:24,32:56:99:1109,0,798
+chr1	186683	.	A	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DP=53;Dels=0.00;FS=1.158;HaplotypeScore=2.9993;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-3.312;QD=12.86;ReadPosRankSum=1.200;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:31,22:53:99:710,0,1078
+chr1	186694	.	T	C	1666.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=30.93;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1695,126,0
+chr1	186695	.	C	T	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.467;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=4.002;QD=16.74;ReadPosRankSum=0.786;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:22,22:44:99:765,0,705
+chr1	186696	.	C	T	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=3.924;QD=17.18;ReadPosRankSum=0.668;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,22:43:99:767,0,660
+chr1	186702	.	C	T	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.286;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-0.080;QD=13.35;ReadPosRankSum=0.034;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:24,21:45:99:629,0,825
+chr1	186707	.	G	A	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQ0=0;MQRankSum=-0.738;QD=15.75;ReadPosRankSum=0.034;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:23,22:45:99:737,0,782
+chr1	186723	.	G	A	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;DP=40;Dels=0.00;FS=2.843;HaplotypeScore=5.9981;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=-0.650;QD=16.19;ReadPosRankSum=-1.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:19,21:40:99:676,0,656
+chr1	186725	.	G	A	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;DP=41;Dels=0.00;FS=4.533;HaplotypeScore=5.9981;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=-0.588;QD=16.65;ReadPosRankSum=-1.216;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:19,22:41:99:711,0,635
+chr1	186730	.	C	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DP=43;Dels=0.00;FS=6.398;HaplotypeScore=7.8644;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.477;QD=2.81;ReadPosRankSum=0.609;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:36,7:43:99:149,0,1300
+chr1	186735	.	T	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;DP=43;Dels=0.00;FS=4.425;HaplotypeScore=7.8644;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-1.278;QD=14.62;ReadPosRankSum=-0.110;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:20,23:43:99:657,0,661
+chr1	186738	.	C	T	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;DP=43;Dels=0.00;FS=1.242;HaplotypeScore=7.8644;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.109;QD=14.95;ReadPosRankSum=-0.935;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:22,21:43:99:671,0,692
+chr1	186794	.	C	A	2054.77	.	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=32.28;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2083,157,0
+chr1	186799	.	A	C	2004.77	.	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=29.67;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2033,154,0
+chr1	186800	.	T	C	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;DP=51;Dels=0.00;FS=3.975;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=0.519;QD=17.51;ReadPosRankSum=0.047;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:24,27:51:99:921,0,810
+chr1	186804	.	C	T	2108.77	.	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=28.56;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2137,166,0
+chr1	186814	.	G	A	2540.77	.	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7339;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.41;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2569,196,0
+chr1	186823	.	T	C	2655.77	.	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7339;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=27.89;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2684,202,0
+chr1	186853	.	A	G	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;DP=60;Dels=0.00;FS=1.028;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.037;QD=13.25;ReadPosRankSum=-1.052;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:34,26:60:99:823,0,1142
+chr1	186856	.	A	G	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=1.735;QD=17.49;ReadPosRankSum=1.096;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:27,34:61:99:1095,0,816
+chr1	186871	.	C	T	2064.77	.	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=34.20;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2093,160,0
+chr1	186897	.	A	G	1641.77	.	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.39;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1670,129,0
+chr1	186922	.	C	T	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DP=39;Dels=0.00;FS=10.184;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.363;QD=15.74;ReadPosRankSum=0.576;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:20,19:39:99:642,0,675
+chr1	186958	.	T	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;DP=38;Dels=0.00;FS=9.513;HaplotypeScore=2.7878;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=-0.015;QD=15.89;ReadPosRankSum=-0.482;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:20,18:38:99:632,0,693
+chr1	186977	.	T	C	1690.77	.	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=33.69;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1719,129,0
+chr1	186990	.	T	A	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.733;DP=43;Dels=0.00;FS=1.194;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=1.494;QD=16.67;ReadPosRankSum=-0.571;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,22:43:99:745,0,730
+chr1	186991	.	G	A	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;DP=42;Dels=0.00;FS=1.170;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=-2.632;QD=15.64;ReadPosRankSum=0.743;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:22,20:42:99:685,0,742
+chr1	186992	.	C	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=59.08;MQ0=0;MQRankSum=-1.503;QD=15.31;ReadPosRankSum=0.980;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:22,19:41:99:656,0,735
+chr1	187055	.	G	A	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;DP=49;Dels=0.00;FS=6.133;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=-1.990;QD=15.77;ReadPosRankSum=-0.770;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:25,24:49:99:801,0,876
+chr1	187064	.	A	G	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;DP=47;Dels=0.00;FS=6.439;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-1.075;QD=16.42;ReadPosRankSum=-0.990;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:24,23:47:99:800,0,846
+chr1	187065	.	G	A	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;DP=46;Dels=0.00;FS=6.548;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-0.923;QD=16.71;ReadPosRankSum=-1.186;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:797,0,815
+chr1	187147	.	C	T	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DP=43;Dels=0.00;FS=1.192;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.400;QD=15.06;ReadPosRankSum=-0.718;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:23,20:43:99:676,0,759
+chr1	187173	.	A	T	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DP=51;Dels=0.00;FS=1.128;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.970;QD=15.78;ReadPosRankSum=-0.688;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:26,25:51:99:833,0,844
+chr1	187185	.	A	T	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;DP=59;Dels=0.00;FS=1.046;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-2.148;QD=15.59;ReadPosRankSum=1.192;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:31,28:59:99:948,0,1051
+chr1	187200	.	T	C	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;DP=70;Dels=0.00;FS=12.081;HaplotypeScore=23.9717;MLEAC=1;MLEAF=0.500;MQ=56.69;MQ0=0;MQRankSum=-5.431;QD=3.13;ReadPosRankSum=-3.935;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:58,12:70:99:247,0,2146
+chr1	187208	.	T	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DP=73;Dels=0.00;FS=9.609;HaplotypeScore=23.9717;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=-5.455;QD=2.83;ReadPosRankSum=-2.746;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:61,12:73:99:235,0,2122
+chr1	187209	.	A	C	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;DP=73;Dels=0.00;FS=1.959;HaplotypeScore=23.9717;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=2.896;QD=13.57;ReadPosRankSum=1.981;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:42,31:73:99:1019,0,1427
+chr1	187247	.	G	A	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;DP=55;Dels=0.00;FS=2.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.33;MQ0=0;MQRankSum=-1.357;QD=19.20;ReadPosRankSum=-1.118;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:23,32:55:99:1084,0,781
+chr1	187248	.	G	T	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;DP=53;Dels=0.00;FS=3.850;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.19;MQ0=0;MQRankSum=-1.911;QD=18.18;ReadPosRankSum=-0.763;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:23,30:53:99:992,0,786
+chr1	187270	.	C	G	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;DP=38;Dels=0.00;FS=2.937;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.61;MQ0=0;MQRankSum=-5.255;QD=13.65;ReadPosRankSum=3.582;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:21,17:38:99:547,0,742
+chr1	187298	.	C	T	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=0;MQRankSum=0.258;QD=21.60;ReadPosRankSum=1.685;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:15,36:51:99:1130,0,459
+chr1	187302	.	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=32.03;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1816,135,0
+chr1	187346	.	C	T	972.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.918;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=3;MQRankSum=2.275;QD=31.38;ReadPosRankSum=1.918;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:5,26:31:78:1001,78,0
+chr1	187362	.	T	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DP=38;Dels=0.00;FS=1.434;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=52.20;MQ0=4;MQRankSum=-2.189;QD=9.18;ReadPosRankSum=0.655;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:24,13:38:99:377,0,655
+chr1	187385	.	C	T	1261.77	.	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=3;QD=34.10;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:2,35:37:99:1290,99,0
+chr1	187414	.	C	A	1254.77	.	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=26.70;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1283,99,0
+chr1	187461	.	C	A	765.77	.	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=29.87;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,20:20:60:794,60,0
+chr1	187503	.	G	A	696.77	.	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.86;MQ0=0;QD=34.21;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,19:19:54:725,54,0
+chr1	187522	.	A	T	1152.77	.	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=31.26;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1181,90,0
+chr1	187574	.	T	A	1364.77	.	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=2;QD=28.79;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:2,36:38:99:1393,108,0
+chr1	187614	.	A	G	872.77	.	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=2;QD=33.57;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,25:26:69:901,69,0
+chr1	187714	.	G	C	1203.77	.	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=2;QD=28.66;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	1/1:0,42:42:96:1232,96,0
+chr1	187753	.	T	C	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;DP=59;Dels=0.00;FS=1.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.49;MQ0=0;MQRankSum=0.555;QD=14.44;ReadPosRankSum=-5.759;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:32,27:59:99:880,0,1099
+chr1	187793	.	T	C	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DP=60;Dels=0.00;FS=1.043;HaplotypeScore=15.7240;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=0.945;QD=19.83;ReadPosRankSum=3.344;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:25,35:60:99:1218,0,816
+chr1	187844	.	T	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.259;QD=21.38;ReadPosRankSum=-0.014;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:15,26:41:99:905,0,488
+chr1	187894	.	G	A	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DP=46;Dels=0.00;FS=4.031;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=1.055;QD=15.97;ReadPosRankSum=-0.483;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:763,0,746
+chr1	187903	.	C	T	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DP=46;Dels=0.00;FS=6.439;HaplotypeScore=4.0994;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=0.791;QD=16.86;ReadPosRankSum=-0.769;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:23,23:46:99:804,0,717
+chr1	188013	.	T	A	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=1.291;QD=16.37;ReadPosRankSum=0.725;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UPSTREAM(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|)	GT:AD:DP:GQ:PL	0/1:25,26:51:99:863,0,808
+chr1	188103	.	G	A	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;DP=55;Dels=0.00;FS=4.032;HaplotypeScore=2.6641;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=0.347;QD=14.07;ReadPosRankSum=0.566;EFF=DOWNSTREAM(MODIFIER||||Cc01g00170|mRNA||GSCOCT00012417001|),DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:30,25:55:99:802,0,993
+chr1	188173	.	G	A	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;DP=42;Dels=0.00;FS=2.786;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-0.013;QD=16.61;ReadPosRankSum=1.599;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:20,22:42:99:726,0,669
+chr1	188266	.	A	G	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;DP=56;Dels=0.00;FS=2.268;HaplotypeScore=3.8663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.827;QD=15.69;ReadPosRankSum=0.412;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:28,27:56:99:907,0,965
+chr1	188270	.	A	G	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;DP=54;Dels=0.00;FS=3.828;HaplotypeScore=4.8662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.692;QD=15.75;ReadPosRankSum=0.709;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:27,27:54:99:879,0,898
+chr1	188311	.	T	G	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;DP=53;Dels=0.00;FS=2.345;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.454;QD=17.01;ReadPosRankSum=0.223;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:25,28:53:99:930,0,831
+chr1	188357	.	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1356,105,0
+chr1	188364	.	G	C	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.585;QD=14.47;ReadPosRankSum=-0.612;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:22,18:40:99:607,0,770
+chr1	188393	.	T	C	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.191;QD=12.28;ReadPosRankSum=-1.385;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:24,18:42:99:544,0,828
+chr1	188395	.	C	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.775;QD=13.26;ReadPosRankSum=-1.773;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:23,18:41:99:572,0,791
+chr1	188416	.	T	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;DP=39;Dels=0.00;FS=1.302;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.893;QD=10.20;ReadPosRankSum=0.571;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:25,14:39:99:426,0,821
+chr1	188438	.	C	A	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;DP=50;Dels=0.00;FS=5.900;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=0.020;QD=18.62;ReadPosRankSum=-0.472;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),UTR_5_PRIME(MODIFIER||||Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:21,29:50:99:959,0,659
+chr1	188621	.	G	A	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DP=49;Dels=0.00;FS=5.986;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.090;QD=14.38;ReadPosRankSum=-0.774;EFF=DOWNSTREAM(MODIFIER||||Cc01g00190|mRNA||GSCOCT00012415001|),SYNONYMOUS_CODING(LOW|SILENT|ttG/ttA|L4|Cc01g00180|mRNA||GSCOCT00012416001|Exon_chr1_188034_188856)	GT:AD:DP:GQ:PL	0/1:27,22:49:99:733,0,926
diff -r 98c37a5d67f4 -r c6640c49fd01 test-data/ped2bed-result.bim
--- a/test-data/ped2bed-result.bim	Wed Feb 07 22:08:47 2018 -0500
+++ b/test-data/ped2bed-result.bim	Mon Apr 16 09:00:24 2018 -0400
@@ -1,2013 +1,2013 @@
-0	Chr1:4299	0	4299	1	3
-0	Chr1:26710	0	26710	4	1
-0	Chr1:56184	0	56184	1	2
-0	Chr1:93272	0	93272	1	4
-0	Chr1:93274	0	93274	4	1
-0	Chr1:146252	0	146252	2	4
-0	Chr1:171433	0	171433	1	4
-0	Chr1:186286	0	186286	1	3
-0	Chr1:198907	0	198907	1	4
-0	Chr1:205550	0	205550	1	4
-0	Chr1:206108	0	206108	1	2
-0	Chr1:214680	0	214680	1	4
-0	Chr1:214775	0	214775	3	4
-0	Chr1:215711	0	215711	1	3
-0	Chr1:217307	0	217307	1	4
-0	Chr1:238821	0	238821	1	4
-0	Chr1:240448	0	240448	4	1
-0	Chr1:240579	0	240579	4	1
-0	Chr1:300528	0	300528	3	1
-0	Chr1:312532	0	312532	4	1
-0	Chr1:337330	0	337330	2	4
-0	Chr1:351841	0	351841	1	4
-0	Chr1:353617	0	353617	3	1
-0	Chr1:405193	0	405193	1	4
-0	Chr1:405217	0	405217	1	2
-0	Chr1:409167	0	409167	4	1
-0	Chr1:415515	0	415515	1	3
-0	Chr1:424861	0	424861	3	1
-0	Chr1:425116	0	425116	1	2
-0	Chr1:429660	0	429660	4	1
-0	Chr1:439393	0	439393	1	4
-0	Chr1:456979	0	456979	4	1
-0	Chr1:479030	0	479030	4	1
-0	Chr1:479033	0	479033	1	4
-0	Chr1:525146	0	525146	4	2
-0	Chr1:535685	0	535685	2	4
-0	Chr1:536093	0	536093	3	1
-0	Chr1:572628	0	572628	4	1
-0	Chr1:577906	0	577906	1	4
-0	Chr1:630114	0	630114	1	3
-0	Chr1:653644	0	653644	4	1
-0	Chr1:660019	0	660019	4	1
-0	Chr1:660070	0	660070	3	1
-0	Chr1:715091	0	715091	4	1
-0	Chr1:715130	0	715130	2	4
-0	Chr1:725844	0	725844	1	2
-0	Chr1:735420	0	735420	4	1
-0	Chr1:735757	0	735757	2	4
-0	Chr1:735810	0	735810	1	4
-0	Chr1:746855	0	746855	1	4
-0	Chr1:753267	0	753267	1	4
-0	Chr1:754061	0	754061	4	1
-0	Chr1:769014	0	769014	1	4
-0	Chr1:782878	0	782878	1	4
-0	Chr1:787761	0	787761	1	4
-0	Chr1:789186	0	789186	1	4
-0	Chr1:792359	0	792359	1	4
-0	Chr1:805716	0	805716	4	1
-0	Chr1:841793	0	841793	4	1
-0	Chr1:845425	0	845425	1	4
-0	Chr1:847587	0	847587	1	4
-0	Chr1:853188	0	853188	2	3
-0	Chr1:853218	0	853218	1	4
-0	Chr1:854818	0	854818	4	1
-0	Chr1:855663	0	855663	4	1
-0	Chr1:859613	0	859613	2	4
-0	Chr1:859635	0	859635	4	1
-0	Chr1:917609	0	917609	4	1
-0	Chr1:917933	0	917933	1	4
-0	Chr1:925316	0	925316	4	1
-0	Chr1:930060	0	930060	1	4
-0	Chr1:930069	0	930069	4	1
-0	Chr1:937007	0	937007	1	3
-0	Chr1:937014	0	937014	1	4
-0	Chr1:938444	0	938444	1	4
-0	Chr1:938619	0	938619	3	2
-0	Chr1:961472	0	961472	4	1
-0	Chr1:961537	0	961537	1	4
-0	Chr1:963122	0	963122	4	1
-0	Chr1:963313	0	963313	1	4
-0	Chr1:973080	0	973080	4	1
-0	Chr1:986764	0	986764	1	4
-0	Chr1:1004926	0	1004926	3	1
-0	Chr1:1009979	0	1009979	4	1
-0	Chr1:1011056	0	1011056	1	4
-0	Chr1:1011714	0	1011714	4	1
-0	Chr1:1012017	0	1012017	1	4
-0	Chr1:1012026	0	1012026	4	1
-0	Chr1:1012111	0	1012111	1	4
-0	Chr1:1026043	0	1026043	1	4
-0	Chr1:1083377	0	1083377	1	3
-0	Chr1:1095742	0	1095742	4	1
-0	Chr1:1124378	0	1124378	2	1
-0	Chr1:1125022	0	1125022	2	4
-0	Chr1:1167717	0	1167717	4	3
-0	Chr1:1172746	0	1172746	2	3
-0	Chr1:1173064	0	1173064	1	4
-0	Chr1:1180585	0	1180585	1	4
-0	Chr1:1182388	0	1182388	3	4
-0	Chr1:1184650	0	1184650	3	1
-0	Chr1:1188838	0	1188838	4	2
-0	Chr1:1197390	0	1197390	4	1
-0	Chr1:1197550	0	1197550	3	1
-0	Chr1:1197663	0	1197663	3	1
-0	Chr1:1208561	0	1208561	2	4
-0	Chr1:1229816	0	1229816	4	1
-0	Chr1:1250047	0	1250047	4	2
-0	Chr1:1286631	0	1286631	1	4
-0	Chr1:1303497	0	1303497	4	1
-0	Chr1:1306055	0	1306055	4	1
-0	Chr1:1306058	0	1306058	1	4
-0	Chr1:1306085	0	1306085	1	3
-0	Chr1:1318689	0	1318689	1	4
-0	Chr1:1358972	0	1358972	4	1
-0	Chr1:1359766	0	1359766	1	4
-0	Chr1:1359769	0	1359769	1	4
-0	Chr1:1365854	0	1365854	1	4
-0	Chr1:1404921	0	1404921	2	4
-0	Chr1:1407386	0	1407386	4	3
-0	Chr1:1443131	0	1443131	3	1
-0	Chr1:1446645	0	1446645	1	4
-0	Chr1:1486728	0	1486728	2	4
-0	Chr1:1492913	0	1492913	2	4
-0	Chr1:1496524	0	1496524	4	1
-0	Chr1:1509728	0	1509728	3	1
-0	Chr1:1515087	0	1515087	1	4
-0	Chr1:1546579	0	1546579	4	2
-0	Chr1:1551208	0	1551208	4	1
-0	Chr1:1563026	0	1563026	1	4
-0	Chr1:1563029	0	1563029	4	1
-0	Chr1:1565548	0	1565548	4	1
-0	Chr1:1598133	0	1598133	4	3
-0	Chr1:1627278	0	1627278	1	4
-0	Chr1:1627327	0	1627327	1	4
-0	Chr1:1632085	0	1632085	1	3
-0	Chr1:1655772	0	1655772	1	4
-0	Chr1:1655775	0	1655775	4	1
-0	Chr1:1671697	0	1671697	3	1
-0	Chr1:1685316	0	1685316	4	3
-0	Chr1:1687456	0	1687456	3	4
-0	Chr1:1703238	0	1703238	1	4
-0	Chr1:1703264	0	1703264	1	2
-0	Chr1:1722207	0	1722207	1	4
-0	Chr1:1724406	0	1724406	4	1
-0	Chr1:1733839	0	1733839	1	4
-0	Chr1:1733934	0	1733934	1	3
-0	Chr1:1735928	0	1735928	1	4
-0	Chr1:1735931	0	1735931	4	1
-0	Chr1:1744069	0	1744069	4	1
-0	Chr1:1765111	0	1765111	2	4
-0	Chr1:1775325	0	1775325	2	1
-0	Chr1:1779402	0	1779402	4	1
-0	Chr1:1779428	0	1779428	1	4
-0	Chr1:1794540	0	1794540	1	4
-0	Chr1:1813268	0	1813268	1	3
-0	Chr1:1815665	0	1815665	4	2
-0	Chr1:1838559	0	1838559	1	4
-0	Chr1:1840223	0	1840223	2	4
-0	Chr1:1840242	0	1840242	4	1
-0	Chr1:1846596	0	1846596	1	3
-0	Chr1:1846601	0	1846601	4	2
-0	Chr1:1870305	0	1870305	4	3
-0	Chr1:1870353	0	1870353	1	4
-0	Chr1:1878428	0	1878428	4	1
-0	Chr1:1878716	0	1878716	1	4
-0	Chr1:1885169	0	1885169	2	4
-0	Chr1:1889286	0	1889286	1	4
-0	Chr1:1897896	0	1897896	1	2
-0	Chr1:1904626	0	1904626	1	3
-0	Chr1:1977607	0	1977607	4	1
-0	Chr1:1983047	0	1983047	4	1
-0	Chr1:1997037	0	1997037	4	1
-0	Chr1:1997040	0	1997040	1	4
-0	Chr1:1997066	0	1997066	2	4
-0	Chr1:1997717	0	1997717	4	1
-0	Chr1:1998863	0	1998863	4	1
-0	Chr1:2000589	0	2000589	4	1
-0	Chr1:2000592	0	2000592	1	4
-0	Chr1:2007458	0	2007458	4	1
-0	Chr1:2018130	0	2018130	4	1
-0	Chr1:2037981	0	2037981	4	1
-0	Chr1:2052371	0	2052371	4	1
-0	Chr1:2061497	0	2061497	4	1
-0	Chr1:2066720	0	2066720	1	4
-0	Chr1:2068983	0	2068983	4	1
-0	Chr1:2077094	0	2077094	1	2
-0	Chr1:2078044	0	2078044	1	4
-0	Chr1:2096740	0	2096740	1	4
-0	Chr1:2097669	0	2097669	1	4
-0	Chr1:2122739	0	2122739	1	4
-0	Chr1:2130342	0	2130342	4	2
-0	Chr1:2171931	0	2171931	1	3
-0	Chr1:2173690	0	2173690	1	3
-0	Chr1:2177838	0	2177838	4	1
-0	Chr1:2210383	0	2210383	4	3
-0	Chr1:2212224	0	2212224	1	4
-0	Chr1:2219483	0	2219483	3	1
-0	Chr1:2220473	0	2220473	2	3
-0	Chr1:2243570	0	2243570	1	4
-0	Chr1:2243573	0	2243573	4	1
-0	Chr1:2269049	0	2269049	2	4
-0	Chr1:2270064	0	2270064	4	2
-0	Chr1:2270164	0	2270164	1	2
-0	Chr1:2274710	0	2274710	4	1
-0	Chr1:2280592	0	2280592	2	1
-0	Chr1:2313151	0	2313151	1	4
-0	Chr1:2314248	0	2314248	1	4
-0	Chr1:2332359	0	2332359	1	4
-0	Chr1:2349219	0	2349219	3	2
-0	Chr1:2375481	0	2375481	4	1
-0	Chr1:2375513	0	2375513	4	1
-0	Chr1:2401975	0	2401975	1	4
-0	Chr1:2402248	0	2402248	4	1
-0	Chr1:2456648	0	2456648	1	4
-0	Chr1:2460840	0	2460840	4	1
-0	Chr1:2460843	0	2460843	1	4
-0	Chr1:2477924	0	2477924	1	4
-0	Chr1:2478878	0	2478878	4	1
-0	Chr1:2480950	0	2480950	1	4
-0	Chr1:2513536	0	2513536	1	4
-0	Chr1:2515387	0	2515387	2	4
-0	Chr1:2531032	0	2531032	1	4
-0	Chr1:2534898	0	2534898	1	4
-0	Chr1:2535271	0	2535271	1	4
-0	Chr1:2541422	0	2541422	4	1
-0	Chr1:2545394	0	2545394	4	1
-0	Chr1:2575648	0	2575648	4	1
-0	Chr1:2575712	0	2575712	4	1
-0	Chr1:2577277	0	2577277	4	1
-0	Chr1:2600252	0	2600252	4	2
-0	Chr1:2600745	0	2600745	4	2
-0	Chr1:2617340	0	2617340	1	4
-0	Chr1:2618221	0	2618221	4	1
-0	Chr1:2655075	0	2655075	2	4
-0	Chr1:2671519	0	2671519	4	1
-0	Chr1:2678840	0	2678840	1	4
-0	Chr1:2690923	0	2690923	4	1
-0	Chr1:2710977	0	2710977	1	3
-0	Chr1:2717785	0	2717785	2	3
-0	Chr1:2745288	0	2745288	3	1
-0	Chr1:2745322	0	2745322	1	4
-0	Chr1:2761219	0	2761219	4	1
-0	Chr1:2762696	0	2762696	1	2
-0	Chr1:2772679	0	2772679	1	4
-0	Chr1:2774279	0	2774279	1	4
-0	Chr1:2782046	0	2782046	4	1
-0	Chr1:2792126	0	2792126	1	4
-0	Chr1:2803218	0	2803218	4	1
-0	Chr1:2806764	0	2806764	1	4
-0	Chr1:2806821	0	2806821	2	4
-0	Chr1:2813168	0	2813168	4	1
-0	Chr1:2813171	0	2813171	4	1
-0	Chr1:2813226	0	2813226	1	4
-0	Chr1:2826712	0	2826712	1	4
-0	Chr1:2831348	0	2831348	4	1
-0	Chr1:2835976	0	2835976	1	3
-0	Chr1:2837692	0	2837692	1	4
-0	Chr1:2840161	0	2840161	4	2
-0	Chr1:2840514	0	2840514	4	1
-0	Chr1:2842082	0	2842082	1	4
-0	Chr1:2845867	0	2845867	1	4
-0	Chr1:2845870	0	2845870	4	1
-0	Chr1:2854835	0	2854835	4	1
-0	Chr1:2875260	0	2875260	1	4
-0	Chr1:2876580	0	2876580	1	4
-0	Chr1:2876583	0	2876583	4	1
-0	Chr1:2877534	0	2877534	4	1
-0	Chr1:2880907	0	2880907	4	1
-0	Chr1:2886294	0	2886294	3	1
-0	Chr1:2893888	0	2893888	1	4
-0	Chr1:2968597	0	2968597	4	1
-0	Chr1:2973516	0	2973516	4	2
-0	Chr1:2978405	0	2978405	3	1
-0	Chr1:2978860	0	2978860	1	2
-0	Chr1:2981773	0	2981773	1	4
-0	Chr1:3018831	0	3018831	3	2
-0	Chr1:3055761	0	3055761	4	3
-0	Chr1:3058996	0	3058996	1	4
-0	Chr1:3085251	0	3085251	4	1
-0	Chr1:3085254	0	3085254	1	4
-0	Chr1:3089221	0	3089221	1	2
-0	Chr1:3094309	0	3094309	1	4
-0	Chr1:3111901	0	3111901	3	4
-0	Chr1:3138003	0	3138003	4	1
-0	Chr1:3185908	0	3185908	1	4
-0	Chr1:3192896	0	3192896	4	1
-0	Chr1:3192967	0	3192967	1	4
-0	Chr1:3194927	0	3194927	1	4
-0	Chr1:3195567	0	3195567	1	4
-0	Chr1:3195570	0	3195570	4	1
-0	Chr1:3227271	0	3227271	1	4
-0	Chr1:3251278	0	3251278	1	4
-0	Chr1:3257528	0	3257528	4	1
-0	Chr1:3273719	0	3273719	4	1
-0	Chr1:3318475	0	3318475	4	1
-0	Chr1:3318482	0	3318482	2	4
-0	Chr1:3318798	0	3318798	4	1
-0	Chr1:3424384	0	3424384	1	3
-0	Chr1:3438288	0	3438288	1	4
-0	Chr1:3438906	0	3438906	2	4
-0	Chr1:3447754	0	3447754	3	1
-0	Chr1:3450240	0	3450240	4	2
-0	Chr1:3452134	0	3452134	3	1
-0	Chr1:3458595	0	3458595	1	4
-0	Chr1:3481748	0	3481748	1	4
-0	Chr1:3485387	0	3485387	4	1
-0	Chr1:3539104	0	3539104	4	1
-0	Chr1:3577960	0	3577960	4	1
-0	Chr1:3620328	0	3620328	1	4
-0	Chr1:3630325	0	3630325	1	4
-0	Chr1:3653094	0	3653094	3	1
-0	Chr1:3675055	0	3675055	1	4
-0	Chr1:3677958	0	3677958	4	2
-0	Chr1:3696855	0	3696855	1	4
-0	Chr1:3731838	0	3731838	1	3
-0	Chr1:3731908	0	3731908	4	1
-0	Chr1:3759779	0	3759779	1	4
-0	Chr1:3822272	0	3822272	4	1
-0	Chr1:3822275	0	3822275	1	4
-0	Chr1:3823559	0	3823559	4	1
-0	Chr1:3841103	0	3841103	1	4
-0	Chr1:3841645	0	3841645	1	4
-0	Chr1:3886960	0	3886960	1	4
-0	Chr1:3920673	0	3920673	2	1
-0	Chr1:3923728	0	3923728	1	4
-0	Chr1:3926741	0	3926741	1	4
-0	Chr1:3946683	0	3946683	3	1
-0	Chr1:3956269	0	3956269	4	2
-0	Chr1:3967354	0	3967354	4	2
-0	Chr1:3969269	0	3969269	1	3
-0	Chr1:3977268	0	3977268	1	3
-0	Chr1:4101969	0	4101969	4	1
-0	Chr1:4102247	0	4102247	4	2
-0	Chr1:4209827	0	4209827	4	1
-0	Chr1:4215678	0	4215678	1	3
-0	Chr1:4227979	0	4227979	1	4
-0	Chr1:4235963	0	4235963	4	2
-0	Chr1:4278014	0	4278014	4	1
-0	Chr1:4294114	0	4294114	1	4
-0	Chr1:4294971	0	4294971	1	3
-0	Chr1:4300674	0	4300674	1	4
-0	Chr1:4301474	0	4301474	3	2
-0	Chr1:4314449	0	4314449	4	2
-0	Chr1:4341445	0	4341445	4	1
-0	Chr1:4380607	0	4380607	2	4
-0	Chr1:4387691	0	4387691	1	4
-0	Chr1:4397436	0	4397436	4	1
-0	Chr1:4404404	0	4404404	4	2
-0	Chr1:4408793	0	4408793	1	4
-0	Chr1:4486246	0	4486246	4	1
-0	Chr1:4488064	0	4488064	1	4
-0	Chr1:4488066	0	4488066	3	1
-0	Chr1:4509995	0	4509995	4	2
-0	Chr1:4520949	0	4520949	4	1
-0	Chr1:4537150	0	4537150	4	2
-0	Chr1:4540507	0	4540507	2	1
-0	Chr1:4541770	0	4541770	1	4
-0	Chr1:4544449	0	4544449	4	1
-0	Chr1:4565655	0	4565655	3	1
-0	Chr1:4565723	0	4565723	1	4
-0	Chr1:4566243	0	4566243	4	1
-0	Chr1:4571641	0	4571641	4	1
-0	Chr1:4587912	0	4587912	4	1
-0	Chr1:4589574	0	4589574	2	4
-0	Chr1:4623253	0	4623253	1	3
-0	Chr1:4729873	0	4729873	2	4
-0	Chr1:4750841	0	4750841	3	2
-0	Chr1:4751416	0	4751416	3	1
-0	Chr1:4762172	0	4762172	4	1
-0	Chr1:4765339	0	4765339	1	4
-0	Chr1:4771031	0	4771031	4	1
-0	Chr1:4794567	0	4794567	1	4
-0	Chr1:4796808	0	4796808	1	4
-0	Chr1:4818594	0	4818594	4	1
-0	Chr1:4829667	0	4829667	4	1
-0	Chr1:4829709	0	4829709	4	1
-0	Chr1:4829746	0	4829746	4	2
-0	Chr1:4830520	0	4830520	4	1
-0	Chr1:4830628	0	4830628	1	4
-0	Chr1:4832810	0	4832810	4	1
-0	Chr1:4837250	0	4837250	3	1
-0	Chr1:4896826	0	4896826	1	3
-0	Chr1:4988652	0	4988652	4	1
-0	Chr1:4988653	0	4988653	1	4
-0	Chr1:4988803	0	4988803	1	3
-0	Chr1:4996172	0	4996172	1	2
-0	Chr1:5004867	0	5004867	4	1
-0	Chr1:5009237	0	5009237	2	4
-0	Chr1:5009291	0	5009291	1	4
-0	Chr1:5017806	0	5017806	2	3
-0	Chr1:5027851	0	5027851	4	1
-0	Chr1:5031814	0	5031814	1	2
-0	Chr1:5031896	0	5031896	1	2
-0	Chr1:5034463	0	5034463	3	1
-0	Chr1:5051124	0	5051124	1	3
-0	Chr1:5054027	0	5054027	1	4
-0	Chr1:5087896	0	5087896	2	1
-0	Chr1:5104630	0	5104630	3	1
-0	Chr1:5131438	0	5131438	4	3
-0	Chr1:5138666	0	5138666	3	1
-0	Chr1:5138715	0	5138715	1	4
-0	Chr1:5140272	0	5140272	1	4
-0	Chr1:5152259	0	5152259	4	1
-0	Chr1:5163525	0	5163525	4	1
-0	Chr1:5244943	0	5244943	1	4
-0	Chr1:5366002	0	5366002	1	3
-0	Chr1:5548352	0	5548352	4	1
-0	Chr1:5708805	0	5708805	3	1
-0	Chr1:5720415	0	5720415	2	4
-0	Chr1:5730222	0	5730222	3	1
-0	Chr1:5744328	0	5744328	4	1
-0	Chr1:5762097	0	5762097	1	4
-0	Chr1:5763894	0	5763894	4	1
-0	Chr1:5768517	0	5768517	4	1
-0	Chr1:5768520	0	5768520	1	4
-0	Chr1:5811704	0	5811704	4	2
-0	Chr1:5811759	0	5811759	1	4
-0	Chr1:5811867	0	5811867	3	4
-0	Chr1:5837591	0	5837591	1	3
-0	Chr1:5837668	0	5837668	2	4
-0	Chr1:5851606	0	5851606	4	1
-0	Chr1:5857851	0	5857851	1	4
-0	Chr1:5857866	0	5857866	4	1
-0	Chr1:5877956	0	5877956	4	1
-0	Chr1:5914160	0	5914160	3	1
-0	Chr1:5933744	0	5933744	4	2
-0	Chr1:5944760	0	5944760	2	4
-0	Chr1:6012694	0	6012694	1	2
-0	Chr1:6019599	0	6019599	4	2
-0	Chr1:6085421	0	6085421	1	3
-0	Chr1:6101649	0	6101649	1	4
-0	Chr1:6125432	0	6125432	2	3
-0	Chr1:6132244	0	6132244	4	2
-0	Chr1:6157622	0	6157622	4	1
-0	Chr1:6159394	0	6159394	4	1
-0	Chr1:6233269	0	6233269	4	2
-0	Chr1:6237067	0	6237067	4	1
-0	Chr1:6274026	0	6274026	1	4
-0	Chr1:6304465	0	6304465	2	3
-0	Chr1:6304540	0	6304540	1	2
-0	Chr1:6338179	0	6338179	3	4
-0	Chr1:6338183	0	6338183	4	1
-0	Chr1:6345430	0	6345430	4	1
-0	Chr1:6345453	0	6345453	4	1
-0	Chr1:6355981	0	6355981	1	4
-0	Chr1:6360493	0	6360493	1	4
-0	Chr1:6360496	0	6360496	4	1
-0	Chr1:6366619	0	6366619	1	4
-0	Chr1:6377145	0	6377145	3	1
-0	Chr1:6381603	0	6381603	1	4
-0	Chr1:6397365	0	6397365	1	4
-0	Chr1:6397400	0	6397400	1	2
-0	Chr1:6404308	0	6404308	3	1
-0	Chr1:6434644	0	6434644	1	4
-0	Chr1:6467542	0	6467542	1	4
-0	Chr1:6470262	0	6470262	3	1
-0	Chr1:6492918	0	6492918	2	1
-0	Chr1:6493069	0	6493069	4	1
-0	Chr1:6493090	0	6493090	4	3
-0	Chr1:6500649	0	6500649	4	1
-0	Chr1:6501316	0	6501316	4	2
-0	Chr1:6507307	0	6507307	3	1
-0	Chr1:6507753	0	6507753	4	1
-0	Chr1:6532696	0	6532696	1	2
-0	Chr1:6532728	0	6532728	4	1
-0	Chr1:6560309	0	6560309	4	1
-0	Chr1:6560358	0	6560358	4	2
-0	Chr1:6571552	0	6571552	4	1
-0	Chr1:6574768	0	6574768	4	2
-0	Chr1:6578214	0	6578214	1	3
-0	Chr1:6585909	0	6585909	3	4
-0	Chr1:6593037	0	6593037	3	1
-0	Chr1:6632594	0	6632594	4	2
-0	Chr1:6641644	0	6641644	4	1
-0	Chr1:6675404	0	6675404	4	2
-0	Chr1:6677508	0	6677508	1	4
-0	Chr1:6683973	0	6683973	1	4
-0	Chr1:6712250	0	6712250	2	1
-0	Chr1:6712989	0	6712989	4	1
-0	Chr1:6796366	0	6796366	1	4
-0	Chr1:6811072	0	6811072	2	3
-0	Chr1:6811076	0	6811076	4	1
-0	Chr1:6811091	0	6811091	2	4
-0	Chr1:6811121	0	6811121	4	1
-0	Chr1:6847337	0	6847337	1	4
-0	Chr1:6847349	0	6847349	4	1
-0	Chr1:6849645	0	6849645	1	4
-0	Chr1:6849893	0	6849893	1	4
-0	Chr1:6870165	0	6870165	1	3
-0	Chr1:6873205	0	6873205	1	4
-0	Chr1:6891098	0	6891098	2	3
-0	Chr1:6900133	0	6900133	1	4
-0	Chr1:6902826	0	6902826	1	3
-0	Chr1:6969931	0	6969931	3	1
-0	Chr1:6975467	0	6975467	3	4
-0	Chr1:6977077	0	6977077	4	1
-0	Chr1:6999281	0	6999281	4	1
-0	Chr1:7005674	0	7005674	2	4
-0	Chr1:7013018	0	7013018	4	1
-0	Chr1:7015263	0	7015263	1	4
-0	Chr1:7035291	0	7035291	2	4
-0	Chr1:7059462	0	7059462	1	4
-0	Chr1:7101706	0	7101706	4	1
-0	Chr1:7119061	0	7119061	1	4
-0	Chr1:7125222	0	7125222	1	4
-0	Chr1:7125225	0	7125225	4	1
-0	Chr1:7125732	0	7125732	1	4
-0	Chr1:7125735	0	7125735	4	1
-0	Chr1:7126796	0	7126796	4	1
-0	Chr1:7127010	0	7127010	4	1
-0	Chr1:7127013	0	7127013	4	1
-0	Chr1:7127054	0	7127054	1	4
-0	Chr1:7175375	0	7175375	1	3
-0	Chr1:7224154	0	7224154	2	4
-0	Chr1:7228825	0	7228825	1	4
-0	Chr1:7233690	0	7233690	4	1
-0	Chr1:7242224	0	7242224	3	1
-0	Chr1:7258509	0	7258509	4	1
-0	Chr1:7276068	0	7276068	4	1
-0	Chr1:7298968	0	7298968	4	3
-0	Chr1:7312405	0	7312405	1	4
-0	Chr1:7326667	0	7326667	4	1
-0	Chr1:7342088	0	7342088	1	4
-0	Chr1:7343412	0	7343412	3	1
-0	Chr1:7343462	0	7343462	1	4
-0	Chr1:7366463	0	7366463	1	3
-0	Chr1:7366468	0	7366468	4	1
-0	Chr1:7370299	0	7370299	1	4
-0	Chr1:7389877	0	7389877	4	1
-0	Chr1:7412734	0	7412734	1	4
-0	Chr1:7412745	0	7412745	1	4
-0	Chr1:7415556	0	7415556	4	1
-0	Chr1:7420788	0	7420788	4	1
-0	Chr1:7436962	0	7436962	4	1
-0	Chr1:7438755	0	7438755	1	4
-0	Chr1:7442314	0	7442314	1	3
-0	Chr1:7447389	0	7447389	1	4
-0	Chr1:7455402	0	7455402	4	1
-0	Chr1:7461331	0	7461331	3	1
-0	Chr1:7465212	0	7465212	4	1
-0	Chr1:7473370	0	7473370	4	2
-0	Chr1:7543140	0	7543140	4	2
-0	Chr1:7559561	0	7559561	2	4
-0	Chr1:7566207	0	7566207	1	2
-0	Chr1:7618541	0	7618541	4	1
-0	Chr1:7665644	0	7665644	1	3
-0	Chr1:7700568	0	7700568	2	1
-0	Chr1:7723694	0	7723694	1	4
-0	Chr1:7764482	0	7764482	4	1
-0	Chr1:7766950	0	7766950	3	2
-0	Chr1:7769520	0	7769520	4	1
-0	Chr1:7769551	0	7769551	4	3
-0	Chr1:7778309	0	7778309	4	2
-0	Chr1:7793992	0	7793992	1	4
-0	Chr1:7920934	0	7920934	1	4
-0	Chr1:8162394	0	8162394	4	1
-0	Chr1:8289727	0	8289727	4	2
-0	Chr1:8438582	0	8438582	1	3
-0	Chr1:8812824	0	8812824	2	4
-0	Chr1:8813546	0	8813546	1	4
-0	Chr1:8851436	0	8851436	2	4
-0	Chr1:8851463	0	8851463	4	1
-0	Chr1:8851509	0	8851509	1	3
-0	Chr1:8858023	0	8858023	1	4
-0	Chr1:8908924	0	8908924	1	4
-0	Chr1:8918233	0	8918233	3	4
-0	Chr1:8951605	0	8951605	1	3
-0	Chr1:9016350	0	9016350	3	4
-0	Chr1:9020093	0	9020093	1	4
-0	Chr1:9056785	0	9056785	4	1
-0	Chr1:9057140	0	9057140	4	2
-0	Chr1:9084085	0	9084085	4	1
-0	Chr1:9194420	0	9194420	1	4
-0	Chr1:9197921	0	9197921	2	4
-0	Chr1:9227808	0	9227808	4	2
-0	Chr1:9260433	0	9260433	3	1
-0	Chr1:9275392	0	9275392	3	1
-0	Chr1:9394261	0	9394261	1	4
-0	Chr1:9454373	0	9454373	1	4
-0	Chr1:9454376	0	9454376	4	1
-0	Chr1:9522987	0	9522987	2	4
-0	Chr1:9646665	0	9646665	4	2
-0	Chr1:9646709	0	9646709	2	3
-0	Chr1:9655017	0	9655017	3	2
-0	Chr1:9671547	0	9671547	3	1
-0	Chr1:9705902	0	9705902	4	1
-0	Chr1:9717333	0	9717333	4	1
-0	Chr1:9723862	0	9723862	3	1
-0	Chr1:9731085	0	9731085	2	4
-0	Chr1:9732526	0	9732526	4	1
-0	Chr1:9738050	0	9738050	1	4
-0	Chr1:9746635	0	9746635	4	1
-0	Chr1:9808580	0	9808580	1	3
-0	Chr1:9886588	0	9886588	4	2
-0	Chr1:9893053	0	9893053	3	1
-0	Chr1:9896467	0	9896467	1	3
-0	Chr1:9917746	0	9917746	1	4
-0	Chr1:9917965	0	9917965	3	2
-0	Chr1:9931813	0	9931813	3	2
-0	Chr1:10008467	0	10008467	1	4
-0	Chr1:10048971	0	10048971	1	2
-0	Chr1:10062033	0	10062033	4	2
-0	Chr1:10108965	0	10108965	2	4
-0	Chr1:10146542	0	10146542	4	1
-0	Chr1:10149878	0	10149878	4	1
-0	Chr1:10152065	0	10152065	3	1
-0	Chr1:10157853	0	10157853	4	1
-0	Chr1:10173044	0	10173044	4	1
-0	Chr1:10221025	0	10221025	4	1
-0	Chr1:10221028	0	10221028	4	1
-0	Chr1:10236510	0	10236510	2	3
-0	Chr1:10236843	0	10236843	1	4
-0	Chr1:10245252	0	10245252	3	1
-0	Chr1:10246598	0	10246598	4	1
-0	Chr1:10267125	0	10267125	4	1
-0	Chr1:10267431	0	10267431	1	3
-0	Chr1:10275320	0	10275320	4	1
-0	Chr1:10280109	0	10280109	3	4
-0	Chr1:10285499	0	10285499	1	4
-0	Chr1:10299032	0	10299032	2	1
-0	Chr1:10299079	0	10299079	1	4
-0	Chr1:10330001	0	10330001	4	1
-0	Chr1:10330004	0	10330004	1	4
-0	Chr1:10434040	0	10434040	4	1
-0	Chr1:10434043	0	10434043	1	4
-0	Chr1:10438894	0	10438894	1	3
-0	Chr1:10471259	0	10471259	2	1
-0	Chr1:10483222	0	10483222	2	4
-0	Chr1:10484065	0	10484065	4	3
-0	Chr1:10494305	0	10494305	2	4
-0	Chr1:10585008	0	10585008	2	1
-0	Chr1:10635813	0	10635813	2	4
-0	Chr1:10714287	0	10714287	1	4
-0	Chr1:10821053	0	10821053	1	4
-0	Chr1:10831601	0	10831601	4	2
-0	Chr1:10832201	0	10832201	1	4
-0	Chr1:10847058	0	10847058	4	1
-0	Chr1:10847061	0	10847061	1	4
-0	Chr1:10896529	0	10896529	1	4
-0	Chr1:10898473	0	10898473	4	1
-0	Chr1:10904805	0	10904805	1	4
-0	Chr1:10932811	0	10932811	2	4
-0	Chr1:10961520	0	10961520	4	2
-0	Chr1:11003689	0	11003689	3	1
-0	Chr1:11012656	0	11012656	1	4
-0	Chr1:11026570	0	11026570	1	3
-0	Chr1:11078438	0	11078438	1	4
-0	Chr1:11079470	0	11079470	4	1
-0	Chr1:11112365	0	11112365	1	3
-0	Chr1:11130600	0	11130600	4	1
-0	Chr1:11158380	0	11158380	1	4
-0	Chr1:11166945	0	11166945	1	4
-0	Chr1:11166963	0	11166963	1	4
-0	Chr1:11222885	0	11222885	4	1
-0	Chr1:11226698	0	11226698	1	4
-0	Chr1:11232299	0	11232299	1	4
-0	Chr1:11276184	0	11276184	3	1
-0	Chr1:11350714	0	11350714	2	3
-0	Chr1:11412878	0	11412878	3	1
-0	Chr1:11418571	0	11418571	2	4
-0	Chr1:11420766	0	11420766	3	1
-0	Chr1:11420873	0	11420873	1	2
-0	Chr1:11451409	0	11451409	1	4
-0	Chr1:11519588	0	11519588	4	1
-0	Chr1:11584178	0	11584178	2	4
-0	Chr1:11585278	0	11585278	2	4
-0	Chr1:11591192	0	11591192	1	4
-0	Chr1:11596361	0	11596361	4	1
-0	Chr1:11611147	0	11611147	4	2
-0	Chr1:11611190	0	11611190	1	4
-0	Chr1:11611212	0	11611212	4	1
-0	Chr1:11631478	0	11631478	1	3
-0	Chr1:11665440	0	11665440	3	1
-0	Chr1:11670766	0	11670766	1	4
-0	Chr1:11747889	0	11747889	1	4
-0	Chr1:11777126	0	11777126	4	1
-0	Chr1:11777129	0	11777129	1	4
-0	Chr1:11814704	0	11814704	3	1
-0	Chr1:11814773	0	11814773	2	4
-0	Chr1:11858180	0	11858180	2	4
-0	Chr1:11866889	0	11866889	2	4
-0	Chr1:11911566	0	11911566	4	1
-0	Chr1:11965076	0	11965076	1	4
-0	Chr1:11984098	0	11984098	1	4
-0	Chr1:12109820	0	12109820	4	2
-0	Chr1:12151982	0	12151982	4	1
-0	Chr1:12153745	0	12153745	4	1
-0	Chr1:12174670	0	12174670	2	4
-0	Chr1:12185962	0	12185962	4	1
-0	Chr1:12186475	0	12186475	1	4
-0	Chr1:12189819	0	12189819	4	1
-0	Chr1:12193807	0	12193807	1	4
-0	Chr1:12193809	0	12193809	4	1
-0	Chr1:12209712	0	12209712	1	4
-0	Chr1:12224859	0	12224859	1	3
-0	Chr1:12232461	0	12232461	4	1
-0	Chr1:12246081	0	12246081	2	1
-0	Chr1:12269327	0	12269327	4	1
-0	Chr1:12269334	0	12269334	1	4
-0	Chr1:12271575	0	12271575	4	1
-0	Chr1:12271637	0	12271637	1	3
-0	Chr1:12342091	0	12342091	4	2
-0	Chr1:12392797	0	12392797	3	2
-0	Chr1:12392808	0	12392808	4	2
-0	Chr1:12421136	0	12421136	4	3
-0	Chr1:12427044	0	12427044	4	1
-0	Chr1:12556906	0	12556906	4	1
-0	Chr1:12559969	0	12559969	4	1
-0	Chr1:12559992	0	12559992	4	1
-0	Chr1:12564237	0	12564237	4	1
-0	Chr1:12564709	0	12564709	1	4
-0	Chr1:12575706	0	12575706	1	4
-0	Chr1:12578135	0	12578135	4	1
-0	Chr1:12582808	0	12582808	4	1
-0	Chr1:12584105	0	12584105	4	1
-0	Chr1:12584284	0	12584284	4	1
-0	Chr1:12588504	0	12588504	3	1
-0	Chr1:12589442	0	12589442	4	1
-0	Chr1:12593391	0	12593391	1	4
-0	Chr1:12593434	0	12593434	4	1
-0	Chr1:12615729	0	12615729	1	4
-0	Chr1:12628917	0	12628917	4	1
-0	Chr1:12630570	0	12630570	1	4
-0	Chr1:12640381	0	12640381	4	1
-0	Chr1:12640384	0	12640384	1	4
-0	Chr1:12657321	0	12657321	2	4
-0	Chr1:12725673	0	12725673	3	1
-0	Chr1:12727016	0	12727016	1	3
-0	Chr1:12727054	0	12727054	1	4
-0	Chr1:12735110	0	12735110	3	4
-0	Chr1:12742974	0	12742974	2	4
-0	Chr1:12745729	0	12745729	1	3
-0	Chr1:12809995	0	12809995	4	1
-0	Chr1:12895082	0	12895082	1	2
-0	Chr1:12916471	0	12916471	3	4
-0	Chr1:12994944	0	12994944	4	1
-0	Chr1:12994947	0	12994947	1	4
-0	Chr1:13117923	0	13117923	4	1
-0	Chr1:13117977	0	13117977	4	2
-0	Chr1:13193179	0	13193179	4	1
-0	Chr1:13240036	0	13240036	4	1
-0	Chr1:13240087	0	13240087	1	3
-0	Chr1:13255281	0	13255281	1	4
-0	Chr1:13266147	0	13266147	2	4
-0	Chr1:13274557	0	13274557	3	1
-0	Chr1:13275190	0	13275190	2	4
-0	Chr1:13275307	0	13275307	1	3
-0	Chr1:13288553	0	13288553	4	3
-0	Chr1:13293946	0	13293946	1	3
-0	Chr1:13294008	0	13294008	3	1
-0	Chr1:13294538	0	13294538	4	1
-0	Chr1:13295165	0	13295165	4	1
-0	Chr1:13295419	0	13295419	4	1
-0	Chr1:13320337	0	13320337	2	4
-0	Chr1:13320358	0	13320358	1	4
-0	Chr1:13357090	0	13357090	4	1
-0	Chr1:13376305	0	13376305	4	2
-0	Chr1:13376342	0	13376342	1	4
-0	Chr1:13392858	0	13392858	4	1
-0	Chr1:13425188	0	13425188	4	1
-0	Chr1:13456006	0	13456006	1	4
-0	Chr1:13479189	0	13479189	1	3
-0	Chr1:13515835	0	13515835	3	1
-0	Chr1:13515890	0	13515890	1	3
-0	Chr1:13549673	0	13549673	1	4
-0	Chr1:13563325	0	13563325	3	2
-0	Chr1:13565275	0	13565275	4	1
-0	Chr1:13581684	0	13581684	4	1
-0	Chr1:13583363	0	13583363	4	1
-0	Chr1:13583588	0	13583588	4	1
-0	Chr1:13583591	0	13583591	4	1
-0	Chr1:13594700	0	13594700	1	4
-0	Chr1:13666386	0	13666386	4	1
-0	Chr1:13800361	0	13800361	2	4
-0	Chr1:13843452	0	13843452	4	1
-0	Chr1:13923009	0	13923009	1	4
-0	Chr1:13991187	0	13991187	1	4
-0	Chr1:13991247	0	13991247	4	1
-0	Chr1:14013444	0	14013444	3	1
-0	Chr1:14017477	0	14017477	2	3
-0	Chr1:14046426	0	14046426	4	1
-0	Chr1:14052799	0	14052799	4	3
-0	Chr1:14103453	0	14103453	2	4
-0	Chr1:14116838	0	14116838	1	4
-0	Chr1:14149394	0	14149394	4	1
-0	Chr1:14281961	0	14281961	1	2
-0	Chr1:14407764	0	14407764	1	4
-0	Chr1:14431379	0	14431379	4	1
-0	Chr1:14528603	0	14528603	4	1
-0	Chr1:14530692	0	14530692	4	1
-0	Chr1:14532466	0	14532466	1	4
-0	Chr1:14533544	0	14533544	1	4
-0	Chr1:14578642	0	14578642	1	4
-0	Chr1:14629689	0	14629689	1	4
-0	Chr1:14639265	0	14639265	1	4
-0	Chr1:14678223	0	14678223	4	2
-0	Chr1:14678240	0	14678240	4	1
-0	Chr1:14678243	0	14678243	1	4
-0	Chr1:14748280	0	14748280	1	3
-0	Chr1:14885651	0	14885651	1	4
-0	Chr1:14889977	0	14889977	4	1
-0	Chr1:14914971	0	14914971	1	4
-0	Chr1:14917741	0	14917741	4	1
-0	Chr1:14920720	0	14920720	4	1
-0	Chr1:14945529	0	14945529	2	4
-0	Chr1:14945566	0	14945566	1	4
-0	Chr1:14992994	0	14992994	4	1
-0	Chr1:14996562	0	14996562	1	4
-0	Chr1:15067138	0	15067138	4	2
-0	Chr1:15078879	0	15078879	4	1
-0	Chr1:15134578	0	15134578	2	3
-0	Chr1:15180533	0	15180533	4	1
-0	Chr1:15186978	0	15186978	1	4
-0	Chr1:15226196	0	15226196	4	1
-0	Chr1:15256483	0	15256483	4	1
-0	Chr1:15256486	0	15256486	1	4
-0	Chr1:15272354	0	15272354	1	4
-0	Chr1:15272815	0	15272815	4	1
-0	Chr1:15283493	0	15283493	1	4
-0	Chr1:15337388	0	15337388	3	1
-0	Chr1:15454899	0	15454899	4	1
-0	Chr1:15512344	0	15512344	2	1
-0	Chr1:15640039	0	15640039	4	1
-0	Chr1:15848297	0	15848297	4	2
-0	Chr1:16077637	0	16077637	1	4
-0	Chr1:16335718	0	16335718	4	1
-0	Chr1:16335721	0	16335721	1	4
-0	Chr1:16385097	0	16385097	4	1
-0	Chr1:16508835	0	16508835	1	4
-0	Chr1:16967472	0	16967472	4	1
-0	Chr1:17397989	0	17397989	1	4
-0	Chr1:17419951	0	17419951	2	4
-0	Chr1:17434173	0	17434173	4	1
-0	Chr1:17602181	0	17602181	1	4
-0	Chr1:17694613	0	17694613	1	4
-0	Chr1:17715289	0	17715289	1	4
-0	Chr1:18031553	0	18031553	4	1
-0	Chr1:18153481	0	18153481	1	4
-0	Chr1:18230118	0	18230118	1	4
-0	Chr1:18418275	0	18418275	4	1
-0	Chr1:18467498	0	18467498	1	3
-0	Chr1:18468479	0	18468479	1	4
-0	Chr1:18543236	0	18543236	1	4
-0	Chr1:18558187	0	18558187	1	4
-0	Chr1:18570086	0	18570086	1	4
-0	Chr1:18570089	0	18570089	4	1
-0	Chr1:18571302	0	18571302	1	4
-0	Chr1:18577494	0	18577494	4	1
-0	Chr1:18579783	0	18579783	1	4
-0	Chr1:18582085	0	18582085	4	1
-0	Chr1:18596271	0	18596271	3	1
-0	Chr1:18625873	0	18625873	1	4
-0	Chr1:18633427	0	18633427	4	1
-0	Chr1:18641673	0	18641673	4	1
-0	Chr1:18663992	0	18663992	1	4
-0	Chr1:18664031	0	18664031	3	4
-0	Chr1:18665430	0	18665430	3	1
-0	Chr1:18665444	0	18665444	4	1
-0	Chr1:18708384	0	18708384	4	1
-0	Chr1:18710810	0	18710810	2	4
-0	Chr1:18725534	0	18725534	4	1
-0	Chr1:18725537	0	18725537	1	4
-0	Chr1:18780192	0	18780192	4	2
-0	Chr1:18780231	0	18780231	1	4
-0	Chr1:18828386	0	18828386	4	1
-0	Chr1:18908050	0	18908050	4	1
-0	Chr1:18927999	0	18927999	4	1
-0	Chr1:18984881	0	18984881	4	1
-0	Chr1:18988396	0	18988396	1	4
-0	Chr1:19012605	0	19012605	4	1
-0	Chr1:19031487	0	19031487	1	4
-0	Chr1:19058808	0	19058808	1	4
-0	Chr1:19080444	0	19080444	1	3
-0	Chr1:19286858	0	19286858	4	1
-0	Chr1:19286869	0	19286869	3	1
-0	Chr1:19333051	0	19333051	2	4
-0	Chr1:19355961	0	19355961	2	3
-0	Chr1:19457517	0	19457517	4	1
-0	Chr1:19463824	0	19463824	4	1
-0	Chr1:19546252	0	19546252	4	1
-0	Chr1:19548751	0	19548751	4	1
-0	Chr1:19600679	0	19600679	1	4
-0	Chr1:19616107	0	19616107	1	4
-0	Chr1:19682153	0	19682153	4	1
-0	Chr1:19682333	0	19682333	4	1
-0	Chr1:19683507	0	19683507	1	4
-0	Chr1:19692522	0	19692522	4	1
-0	Chr1:19844645	0	19844645	4	1
-0	Chr1:19875492	0	19875492	4	1
-0	Chr1:19884303	0	19884303	1	4
-0	Chr1:19890812	0	19890812	1	4
-0	Chr1:19918575	0	19918575	3	1
-0	Chr1:19960915	0	19960915	1	2
-0	Chr1:20043559	0	20043559	4	1
-0	Chr1:20043762	0	20043762	1	4
-0	Chr1:20200430	0	20200430	1	4
-0	Chr1:20244907	0	20244907	1	4
-0	Chr1:20283003	0	20283003	4	3
-0	Chr1:20297936	0	20297936	4	1
-0	Chr1:20307459	0	20307459	1	2
-0	Chr1:20414880	0	20414880	2	1
-0	Chr1:20418207	0	20418207	2	1
-0	Chr1:20453895	0	20453895	1	4
-0	Chr1:20457891	0	20457891	1	4
-0	Chr1:20480254	0	20480254	4	2
-0	Chr1:20484206	0	20484206	4	1
-0	Chr1:20502469	0	20502469	3	1
-0	Chr1:20502498	0	20502498	4	2
-0	Chr1:20527190	0	20527190	1	4
-0	Chr1:20536861	0	20536861	4	1
-0	Chr1:20583778	0	20583778	2	3
-0	Chr1:20603211	0	20603211	2	4
-0	Chr1:20628363	0	20628363	4	1
-0	Chr1:20749512	0	20749512	4	1
-0	Chr1:20808148	0	20808148	2	4
-0	Chr1:20808185	0	20808185	4	1
-0	Chr1:20808188	0	20808188	1	4
-0	Chr1:20941827	0	20941827	4	1
-0	Chr1:20985001	0	20985001	2	4
-0	Chr1:21014787	0	21014787	1	3
-0	Chr1:21044771	0	21044771	1	3
-0	Chr1:21082093	0	21082093	4	2
-0	Chr1:21126090	0	21126090	1	3
-0	Chr1:21160401	0	21160401	1	4
-0	Chr1:21160870	0	21160870	3	1
-0	Chr1:21201262	0	21201262	4	1
-0	Chr1:21201330	0	21201330	2	4
-0	Chr1:21203185	0	21203185	4	1
-0	Chr1:21237101	0	21237101	1	4
-0	Chr1:21238922	0	21238922	4	1
-0	Chr1:21240239	0	21240239	1	4
-0	Chr1:21241093	0	21241093	1	4
-0	Chr1:21275917	0	21275917	1	4
-0	Chr1:21357238	0	21357238	2	1
-0	Chr1:21385607	0	21385607	4	3
-0	Chr1:21415113	0	21415113	4	1
-0	Chr1:21440962	0	21440962	1	4
-0	Chr1:21503565	0	21503565	1	4
-0	Chr1:21562231	0	21562231	4	1
-0	Chr1:21603665	0	21603665	1	4
-0	Chr1:21672420	0	21672420	4	1
-0	Chr1:21684647	0	21684647	2	4
-0	Chr1:21687037	0	21687037	4	1
-0	Chr1:21692496	0	21692496	1	4
-0	Chr1:21700123	0	21700123	4	1
-0	Chr1:21712360	0	21712360	1	4
-0	Chr1:21750711	0	21750711	3	1
-0	Chr1:21750725	0	21750725	3	1
-0	Chr1:21788731	0	21788731	2	4
-0	Chr1:21788887	0	21788887	4	2
-0	Chr1:21793111	0	21793111	4	1
-0	Chr1:21793114	0	21793114	1	4
-0	Chr1:21811411	0	21811411	1	4
-0	Chr1:22221087	0	22221087	1	4
-0	Chr1:22362000	0	22362000	4	1
-0	Chr1:22365064	0	22365064	1	4
-0	Chr1:22366394	0	22366394	1	4
-0	Chr1:22420228	0	22420228	1	4
-0	Chr1:22434088	0	22434088	4	1
-0	Chr1:22436948	0	22436948	1	4
-0	Chr1:22438238	0	22438238	1	4
-0	Chr1:22441431	0	22441431	4	2
-0	Chr1:22446965	0	22446965	2	4
-0	Chr1:22452793	0	22452793	4	1
-0	Chr1:22452814	0	22452814	1	3
-0	Chr1:22456223	0	22456223	1	3
-0	Chr1:22456541	0	22456541	1	4
-0	Chr1:22464901	0	22464901	3	1
-0	Chr1:22464938	0	22464938	4	1
-0	Chr1:22465695	0	22465695	4	1
-0	Chr1:22467542	0	22467542	4	1
-0	Chr1:22468575	0	22468575	1	4
-0	Chr1:22486715	0	22486715	4	2
-0	Chr1:22486765	0	22486765	1	3
-0	Chr1:22507492	0	22507492	4	1
-0	Chr1:22527085	0	22527085	1	3
-0	Chr1:22557545	0	22557545	3	1
-0	Chr1:22560937	0	22560937	1	4
-0	Chr1:22591601	0	22591601	2	4
-0	Chr1:22594675	0	22594675	3	2
-0	Chr1:22617285	0	22617285	1	4
-0	Chr1:22636521	0	22636521	2	4
-0	Chr1:22672543	0	22672543	4	1
-0	Chr1:22672589	0	22672589	4	3
-0	Chr1:22674616	0	22674616	1	4
-0	Chr1:22726998	0	22726998	3	4
-0	Chr1:22739593	0	22739593	4	1
-0	Chr1:22739596	0	22739596	1	4
-0	Chr1:22739995	0	22739995	4	1
-0	Chr1:22740010	0	22740010	1	4
-0	Chr1:22780246	0	22780246	1	3
-0	Chr1:22822065	0	22822065	2	4
-0	Chr1:22828980	0	22828980	1	3
-0	Chr1:22837071	0	22837071	4	1
-0	Chr1:22837075	0	22837075	1	4
-0	Chr1:22974966	0	22974966	3	1
-0	Chr1:22974971	0	22974971	1	4
-0	Chr1:22974974	0	22974974	1	4
-0	Chr1:22975037	0	22975037	4	2
-0	Chr1:22991392	0	22991392	4	3
-0	Chr1:22991925	0	22991925	4	1
-0	Chr1:23006900	0	23006900	4	1
-0	Chr1:23006936	0	23006936	1	4
-0	Chr1:23079278	0	23079278	1	4
-0	Chr1:23083004	0	23083004	1	3
-0	Chr1:23096859	0	23096859	4	2
-0	Chr1:23103054	0	23103054	4	1
-0	Chr1:23147512	0	23147512	1	2
-0	Chr1:23151111	0	23151111	2	3
-0	Chr1:23152355	0	23152355	1	4
-0	Chr1:23168512	0	23168512	1	3
-0	Chr1:23171855	0	23171855	2	4
-0	Chr1:23183180	0	23183180	3	1
-0	Chr1:23203034	0	23203034	4	1
-0	Chr1:23216787	0	23216787	4	1
-0	Chr1:23235085	0	23235085	4	1
-0	Chr1:23248184	0	23248184	1	2
-0	Chr1:23297650	0	23297650	4	1
-0	Chr1:23324317	0	23324317	4	1
-0	Chr1:23332211	0	23332211	4	1
-0	Chr1:23338972	0	23338972	4	1
-0	Chr1:23349168	0	23349168	4	1
-0	Chr1:23351414	0	23351414	2	4
-0	Chr1:23353553	0	23353553	1	4
-0	Chr1:23366101	0	23366101	3	1
-0	Chr1:23378783	0	23378783	1	3
-0	Chr1:23392716	0	23392716	3	1
-0	Chr1:23395515	0	23395515	4	1
-0	Chr1:23395522	0	23395522	1	4
-0	Chr1:23403909	0	23403909	4	3
-0	Chr1:23404803	0	23404803	1	2
-0	Chr1:23404854	0	23404854	4	1
-0	Chr1:23426983	0	23426983	1	4
-0	Chr1:23426986	0	23426986	4	1
-0	Chr1:23431931	0	23431931	1	4
-0	Chr1:23448547	0	23448547	2	4
-0	Chr1:23530885	0	23530885	2	3
-0	Chr1:23531955	0	23531955	4	2
-0	Chr1:23543040	0	23543040	1	4
-0	Chr1:23556083	0	23556083	4	1
-0	Chr1:23575160	0	23575160	1	4
-0	Chr1:23610833	0	23610833	4	1
-0	Chr1:23610842	0	23610842	3	4
-0	Chr1:23620798	0	23620798	2	1
-0	Chr1:23624047	0	23624047	1	3
-0	Chr1:23634488	0	23634488	1	4
-0	Chr1:23648137	0	23648137	1	4
-0	Chr1:23651986	0	23651986	4	2
-0	Chr1:23721841	0	23721841	4	1
-0	Chr1:23721844	0	23721844	1	4
-0	Chr1:23731885	0	23731885	4	2
-0	Chr1:23756111	0	23756111	1	4
-0	Chr1:23762143	0	23762143	2	4
-0	Chr1:23782998	0	23782998	4	1
-0	Chr1:23785932	0	23785932	1	4
-0	Chr1:23836611	0	23836611	2	4
-0	Chr1:23857915	0	23857915	1	4
-0	Chr1:23863742	0	23863742	1	4
-0	Chr1:23882305	0	23882305	4	2
-0	Chr1:23896573	0	23896573	4	1
-0	Chr1:23897070	0	23897070	1	4
-0	Chr1:23913125	0	23913125	3	4
-0	Chr1:23922001	0	23922001	1	4
-0	Chr1:23935969	0	23935969	4	1
-0	Chr1:23939765	0	23939765	1	3
-0	Chr1:23972022	0	23972022	2	1
-0	Chr1:23986664	0	23986664	1	4
-0	Chr1:24004564	0	24004564	1	4
-0	Chr1:24034453	0	24034453	4	1
-0	Chr1:24037402	0	24037402	4	1
-0	Chr1:24049164	0	24049164	1	4
-0	Chr1:24092946	0	24092946	4	1
-0	Chr1:24093753	0	24093753	4	1
-0	Chr1:24116624	0	24116624	4	1
-0	Chr1:24116678	0	24116678	1	4
-0	Chr1:24124359	0	24124359	1	4
-0	Chr1:24129826	0	24129826	1	4
-0	Chr1:24147784	0	24147784	4	2
-0	Chr1:24234620	0	24234620	3	1
-0	Chr1:24234629	0	24234629	3	1
-0	Chr1:24234677	0	24234677	3	4
-0	Chr1:24239996	0	24239996	3	1
-0	Chr1:24240019	0	24240019	1	4
-0	Chr1:24310319	0	24310319	4	3
-0	Chr1:24336951	0	24336951	4	1
-0	Chr1:24381824	0	24381824	3	4
-0	Chr1:24462566	0	24462566	3	1
-0	Chr1:24482154	0	24482154	1	4
-0	Chr1:24489729	0	24489729	3	1
-0	Chr1:24502190	0	24502190	4	1
-0	Chr1:24510021	0	24510021	1	4
-0	Chr1:24533617	0	24533617	4	1
-0	Chr1:24560384	0	24560384	3	1
-0	Chr1:24560461	0	24560461	4	3
-0	Chr1:24563014	0	24563014	4	2
-0	Chr1:24567170	0	24567170	4	3
-0	Chr1:24593376	0	24593376	3	4
-0	Chr1:24617946	0	24617946	2	4
-0	Chr1:24640251	0	24640251	1	4
-0	Chr1:24657015	0	24657015	4	1
-0	Chr1:24657701	0	24657701	4	1
-0	Chr1:24669568	0	24669568	2	4
-0	Chr1:24695185	0	24695185	2	1
-0	Chr1:24709143	0	24709143	1	4
-0	Chr1:24709146	0	24709146	4	1
-0	Chr1:24729468	0	24729468	4	2
-0	Chr1:24760790	0	24760790	1	4
-0	Chr1:24760793	0	24760793	4	1
-0	Chr1:24765623	0	24765623	1	3
-0	Chr1:24779640	0	24779640	4	1
-0	Chr1:24809285	0	24809285	2	1
-0	Chr1:24818955	0	24818955	1	3
-0	Chr1:24836934	0	24836934	4	1
-0	Chr1:24841900	0	24841900	4	1
-0	Chr1:24848754	0	24848754	4	1
-0	Chr1:24851489	0	24851489	4	1
-0	Chr1:24859483	0	24859483	4	1
-0	Chr1:24859549	0	24859549	4	1
-0	Chr1:24867007	0	24867007	4	1
-0	Chr1:24870728	0	24870728	1	3
-0	Chr1:24871752	0	24871752	2	3
-0	Chr1:24874960	0	24874960	3	2
-0	Chr1:24874996	0	24874996	1	4
-0	Chr1:24887222	0	24887222	1	4
-0	Chr1:24896805	0	24896805	1	4
-0	Chr1:24919167	0	24919167	3	1
-0	Chr1:24920731	0	24920731	2	4
-0	Chr1:24926843	0	24926843	1	4
-0	Chr1:24934092	0	24934092	1	4
-0	Chr1:24970821	0	24970821	4	2
-0	Chr1:24970826	0	24970826	1	4
-0	Chr1:24970829	0	24970829	1	4
-0	Chr1:24987874	0	24987874	4	1
-0	Chr1:25012595	0	25012595	4	1
-0	Chr1:25016468	0	25016468	1	4
-0	Chr1:25067075	0	25067075	4	3
-0	Chr1:25077288	0	25077288	4	1
-0	Chr1:25091984	0	25091984	3	1
-0	Chr1:25115923	0	25115923	4	1
-0	Chr1:25136014	0	25136014	1	3
-0	Chr1:25155677	0	25155677	1	2
-0	Chr1:25160990	0	25160990	1	4
-0	Chr1:25160993	0	25160993	4	1
-0	Chr1:25230277	0	25230277	3	4
-0	Chr1:25259414	0	25259414	3	1
-0	Chr1:25262919	0	25262919	1	4
-0	Chr1:25262924	0	25262924	1	4
-0	Chr1:25266878	0	25266878	4	1
-0	Chr1:25266881	0	25266881	4	1
-0	Chr1:25266922	0	25266922	4	2
-0	Chr1:25281106	0	25281106	1	4
-0	Chr1:25281928	0	25281928	4	2
-0	Chr1:25294455	0	25294455	4	2
-0	Chr1:25298123	0	25298123	3	1
-0	Chr1:25362835	0	25362835	1	4
-0	Chr1:25371899	0	25371899	1	4
-0	Chr1:25372636	0	25372636	3	2
-0	Chr1:25414435	0	25414435	1	4
-0	Chr1:25414438	0	25414438	1	4
-0	Chr1:25498933	0	25498933	1	4
-0	Chr1:25508055	0	25508055	2	3
-0	Chr1:25593002	0	25593002	4	1
-0	Chr1:25596880	0	25596880	1	3
-0	Chr1:25642202	0	25642202	1	3
-0	Chr1:25642232	0	25642232	1	3
-0	Chr1:25684059	0	25684059	1	4
-0	Chr1:25685951	0	25685951	1	4
-0	Chr1:25844706	0	25844706	1	2
-0	Chr1:25852185	0	25852185	3	1
-0	Chr1:26199529	0	26199529	1	2
-0	Chr1:26294671	0	26294671	2	4
-0	Chr1:26438710	0	26438710	3	1
-0	Chr1:26481633	0	26481633	1	4
-0	Chr1:26511593	0	26511593	4	2
-0	Chr1:26523741	0	26523741	3	1
-0	Chr1:26692985	0	26692985	3	1
-0	Chr1:26734999	0	26734999	3	4
-0	Chr1:26786974	0	26786974	4	1
-0	Chr1:26786992	0	26786992	3	1
-0	Chr1:26816312	0	26816312	4	2
-0	Chr1:26822126	0	26822126	3	1
-0	Chr1:26863487	0	26863487	4	3
-0	Chr1:26917422	0	26917422	4	1
-0	Chr1:27025297	0	27025297	1	4
-0	Chr1:27028736	0	27028736	1	4
-0	Chr1:27029297	0	27029297	1	4
-0	Chr1:27091260	0	27091260	2	1
-0	Chr1:27104120	0	27104120	3	2
-0	Chr1:27146134	0	27146134	1	3
-0	Chr1:27266029	0	27266029	1	4
-0	Chr1:27285055	0	27285055	4	1
-0	Chr1:27285080	0	27285080	1	3
-0	Chr1:27289893	0	27289893	3	4
-0	Chr1:27338364	0	27338364	3	1
-0	Chr1:27417659	0	27417659	1	4
-0	Chr1:27435104	0	27435104	3	1
-0	Chr1:27506185	0	27506185	3	1
-0	Chr1:27587166	0	27587166	2	1
-0	Chr1:27596768	0	27596768	4	2
-0	Chr1:27610155	0	27610155	4	1
-0	Chr1:27666969	0	27666969	1	3
-0	Chr1:27718132	0	27718132	4	3
-0	Chr1:27735730	0	27735730	4	1
-0	Chr1:27736608	0	27736608	1	4
-0	Chr1:27737357	0	27737357	4	1
-0	Chr1:27737916	0	27737916	4	1
-0	Chr1:27759181	0	27759181	3	1
-0	Chr1:27771876	0	27771876	1	4
-0	Chr1:27868280	0	27868280	4	1
-0	Chr1:27868311	0	27868311	1	2
-0	Chr1:27873027	0	27873027	1	4
-0	Chr1:27907035	0	27907035	2	4
-0	Chr1:27941462	0	27941462	1	4
-0	Chr1:27941465	0	27941465	4	1
-0	Chr1:27949168	0	27949168	4	2
-0	Chr1:27997299	0	27997299	1	4
-0	Chr1:28028497	0	28028497	4	1
-0	Chr1:28028544	0	28028544	4	2
-0	Chr1:28051371	0	28051371	2	4
-0	Chr1:28058059	0	28058059	1	4
-0	Chr1:28099212	0	28099212	3	2
-0	Chr1:28100175	0	28100175	3	1
-0	Chr1:28113816	0	28113816	1	4
-0	Chr1:28116035	0	28116035	2	4
-0	Chr1:28121245	0	28121245	4	1
-0	Chr1:28121248	0	28121248	1	4
-0	Chr1:28121386	0	28121386	4	1
-0	Chr1:28145665	0	28145665	2	4
-0	Chr1:28152031	0	28152031	4	1
-0	Chr1:28163355	0	28163355	2	3
-0	Chr1:28167914	0	28167914	3	1
-0	Chr1:28169187	0	28169187	1	4
-0	Chr1:28185610	0	28185610	2	4
-0	Chr1:28232781	0	28232781	4	3
-0	Chr1:28237644	0	28237644	2	3
-0	Chr1:28265490	0	28265490	4	1
-0	Chr1:28265521	0	28265521	4	1
-0	Chr1:28265640	0	28265640	4	1
-0	Chr1:28268218	0	28268218	1	4
-0	Chr1:28284170	0	28284170	1	4
-0	Chr1:28291784	0	28291784	3	4
-0	Chr1:28297312	0	28297312	3	2
-0	Chr1:28315347	0	28315347	4	1
-0	Chr1:28326804	0	28326804	4	1
-0	Chr1:28342158	0	28342158	1	4
-0	Chr1:28342161	0	28342161	4	1
-0	Chr1:28350843	0	28350843	2	3
-0	Chr1:28372588	0	28372588	2	3
-0	Chr1:28376571	0	28376571	1	2
-0	Chr1:28390748	0	28390748	4	1
-0	Chr1:28429525	0	28429525	1	4
-0	Chr1:28454740	0	28454740	1	3
-0	Chr1:28512339	0	28512339	1	4
-0	Chr1:28514788	0	28514788	1	4
-0	Chr1:28519768	0	28519768	4	1
-0	Chr1:28537829	0	28537829	1	4
-0	Chr1:28537832	0	28537832	4	1
-0	Chr1:28552455	0	28552455	2	4
-0	Chr1:28555605	0	28555605	1	4
-0	Chr1:28568271	0	28568271	1	4
-0	Chr1:28579083	0	28579083	1	2
-0	Chr1:28624282	0	28624282	3	1
-0	Chr1:28624318	0	28624318	1	4
-0	Chr1:28629177	0	28629177	4	1
-0	Chr1:28657314	0	28657314	3	4
-0	Chr1:28657913	0	28657913	2	4
-0	Chr1:28661347	0	28661347	3	1
-0	Chr1:28661378	0	28661378	1	4
-0	Chr1:28661381	0	28661381	1	4
-0	Chr1:28662072	0	28662072	4	1
-0	Chr1:28662082	0	28662082	4	1
-0	Chr1:28669462	0	28669462	1	4
-0	Chr1:28671486	0	28671486	4	1
-0	Chr1:28671984	0	28671984	1	2
-0	Chr1:28707366	0	28707366	1	4
-0	Chr1:28707974	0	28707974	1	4
-0	Chr1:28709069	0	28709069	3	4
-0	Chr1:28709128	0	28709128	4	1
-0	Chr1:28709131	0	28709131	1	4
-0	Chr1:28739760	0	28739760	1	4
-0	Chr1:28752523	0	28752523	1	4
-0	Chr1:28776300	0	28776300	4	2
-0	Chr1:28790241	0	28790241	1	3
-0	Chr1:28797680	0	28797680	1	4
-0	Chr1:28810134	0	28810134	1	4
-0	Chr1:28818609	0	28818609	4	1
-0	Chr1:28818659	0	28818659	4	3
-0	Chr1:28839003	0	28839003	4	2
-0	Chr1:28893652	0	28893652	4	2
-0	Chr1:28911097	0	28911097	4	1
-0	Chr1:28912479	0	28912479	4	1
-0	Chr1:28920030	0	28920030	4	1
-0	Chr1:28920035	0	28920035	1	4
-0	Chr1:28937099	0	28937099	3	2
-0	Chr1:28937110	0	28937110	4	1
-0	Chr1:28950372	0	28950372	4	1
-0	Chr1:28953029	0	28953029	2	4
-0	Chr1:28975242	0	28975242	3	1
-0	Chr1:28976173	0	28976173	1	2
-0	Chr1:28976215	0	28976215	3	1
-0	Chr1:28980467	0	28980467	1	3
-0	Chr1:28985758	0	28985758	4	1
-0	Chr1:28985794	0	28985794	3	1
-0	Chr1:28992324	0	28992324	1	4
-0	Chr1:28993573	0	28993573	1	4
-0	Chr1:29062709	0	29062709	4	2
-0	Chr1:29062777	0	29062777	1	4
-0	Chr1:29069259	0	29069259	1	3
-0	Chr1:29104165	0	29104165	4	3
-0	Chr1:29110315	0	29110315	4	1
-0	Chr1:29116135	0	29116135	4	2
-0	Chr1:29143205	0	29143205	4	2
-0	Chr1:29184329	0	29184329	2	4
-0	Chr1:29221871	0	29221871	1	2
-0	Chr1:29221916	0	29221916	1	3
-0	Chr1:29240567	0	29240567	3	1
-0	Chr1:29275468	0	29275468	4	1
-0	Chr1:29290850	0	29290850	1	3
-0	Chr1:29291614	0	29291614	1	3
-0	Chr1:29294897	0	29294897	4	1
-0	Chr1:29323260	0	29323260	1	4
-0	Chr1:29338674	0	29338674	2	1
-0	Chr1:29342748	0	29342748	3	1
-0	Chr1:29368312	0	29368312	1	3
-0	Chr1:29368316	0	29368316	1	4
-0	Chr1:29381840	0	29381840	3	2
-0	Chr1:29388895	0	29388895	1	4
-0	Chr1:29426085	0	29426085	2	4
-0	Chr1:29442134	0	29442134	1	3
-0	Chr1:29442212	0	29442212	1	2
-0	Chr1:29444106	0	29444106	1	3
-0	Chr1:29445837	0	29445837	1	3
-0	Chr1:29459338	0	29459338	3	4
-0	Chr1:29462209	0	29462209	3	4
-0	Chr1:29464821	0	29464821	4	2
-0	Chr1:29520268	0	29520268	4	2
-0	Chr1:29529194	0	29529194	1	4
-0	Chr1:29529520	0	29529520	4	2
-0	Chr1:29529573	0	29529573	1	4
-0	Chr1:29540540	0	29540540	1	4
-0	Chr1:29556065	0	29556065	1	4
-0	Chr1:29556067	0	29556067	1	2
-0	Chr1:29556722	0	29556722	1	4
-0	Chr1:29556725	0	29556725	1	4
-0	Chr1:29569341	0	29569341	4	1
-0	Chr1:29615657	0	29615657	1	4
-0	Chr1:29665399	0	29665399	1	4
-0	Chr1:29676504	0	29676504	4	3
-0	Chr1:29707926	0	29707926	4	1
-0	Chr1:29732730	0	29732730	4	1
-0	Chr1:29734245	0	29734245	1	4
-0	Chr1:29736117	0	29736117	4	1
-0	Chr1:29741984	0	29741984	1	4
-0	Chr1:29741987	0	29741987	4	1
-0	Chr1:29755512	0	29755512	1	4
-0	Chr1:29758534	0	29758534	1	4
-0	Chr1:29770060	0	29770060	1	4
-0	Chr1:29770066	0	29770066	4	1
-0	Chr1:29780222	0	29780222	4	1
-0	Chr1:29805304	0	29805304	4	1
-0	Chr1:29805469	0	29805469	2	4
-0	Chr1:29810581	0	29810581	2	1
-0	Chr1:29871968	0	29871968	3	1
-0	Chr1:29894876	0	29894876	1	3
-0	Chr1:29912009	0	29912009	4	1
-0	Chr1:29934876	0	29934876	4	1
-0	Chr1:29934926	0	29934926	1	3
-0	Chr1:29956787	0	29956787	2	1
-0	Chr1:29976618	0	29976618	1	4
-0	Chr1:29976945	0	29976945	4	3
-0	Chr1:29977025	0	29977025	1	3
-0	Chr1:29981185	0	29981185	4	1
-0	Chr1:29981189	0	29981189	1	4
-0	Chr1:29988911	0	29988911	4	1
-0	Chr1:29989242	0	29989242	1	3
-0	Chr1:29993665	0	29993665	4	3
-0	Chr1:29994545	0	29994545	4	3
-0	Chr1:29994671	0	29994671	3	1
-0	Chr1:30033870	0	30033870	1	4
-0	Chr1:30037897	0	30037897	2	4
-0	Chr1:30048246	0	30048246	4	1
-0	Chr1:30048276	0	30048276	2	4
-0	Chr1:30096375	0	30096375	1	3
-0	Chr1:30157657	0	30157657	1	4
-0	Chr1:30167454	0	30167454	2	4
-0	Chr1:30183413	0	30183413	1	3
-0	Chr1:30197987	0	30197987	1	4
-0	Chr1:30244448	0	30244448	1	4
-0	Chr1:30244449	0	30244449	4	1
-0	Chr1:30265177	0	30265177	1	4
-0	Chr1:30500836	0	30500836	3	4
-0	Chr1:30557638	0	30557638	1	4
-0	Chr1:30617594	0	30617594	2	1
-0	Chr1:30632340	0	30632340	2	4
-0	Chr1:30645778	0	30645778	4	3
-0	Chr1:30666725	0	30666725	1	4
-0	Chr1:30679434	0	30679434	1	4
-0	Chr1:30715119	0	30715119	2	1
-0	Chr1:30862865	0	30862865	3	2
-0	Chr1:30875285	0	30875285	1	4
-0	Chr1:30988314	0	30988314	4	1
-0	Chr1:31252146	0	31252146	3	1
-0	Chr1:31252678	0	31252678	1	2
-0	Chr1:31252704	0	31252704	1	4
-0	Chr1:31305056	0	31305056	1	3
-0	Chr1:31353236	0	31353236	3	2
-0	Chr1:31396730	0	31396730	1	3
-0	Chr1:31421361	0	31421361	4	1
-0	Chr1:31431656	0	31431656	4	1
-0	Chr1:31453373	0	31453373	3	4
-0	Chr1:31485589	0	31485589	1	4
-0	Chr1:31509969	0	31509969	3	4
-0	Chr1:31509971	0	31509971	1	3
-0	Chr1:31510049	0	31510049	4	2
-0	Chr1:31524422	0	31524422	1	4
-0	Chr1:31557933	0	31557933	4	1
-0	Chr1:31557936	0	31557936	4	1
-0	Chr1:31557986	0	31557986	3	4
-0	Chr1:31559810	0	31559810	2	4
-0	Chr1:31559895	0	31559895	2	1
-0	Chr1:31566399	0	31566399	4	1
-0	Chr1:31569296	0	31569296	1	2
-0	Chr1:31571201	0	31571201	4	1
-0	Chr1:31571975	0	31571975	4	1
-0	Chr1:31571987	0	31571987	2	4
-0	Chr1:31577334	0	31577334	4	1
-0	Chr1:31602416	0	31602416	1	3
-0	Chr1:31608861	0	31608861	4	1
-0	Chr1:31630945	0	31630945	1	3
-0	Chr1:31656589	0	31656589	4	1
-0	Chr1:31677735	0	31677735	3	1
-0	Chr1:31684486	0	31684486	4	1
-0	Chr1:31695659	0	31695659	1	4
-0	Chr1:31779847	0	31779847	4	1
-0	Chr1:31779850	0	31779850	1	4
-0	Chr1:31779865	0	31779865	3	1
-0	Chr1:31811093	0	31811093	4	1
-0	Chr1:31811659	0	31811659	1	4
-0	Chr1:31826446	0	31826446	2	4
-0	Chr1:31850290	0	31850290	3	1
-0	Chr1:31857928	0	31857928	4	1
-0	Chr1:31857929	0	31857929	1	4
-0	Chr1:31862466	0	31862466	2	4
-0	Chr1:31862528	0	31862528	1	4
-0	Chr1:31867111	0	31867111	2	4
-0	Chr1:31876051	0	31876051	3	1
-0	Chr1:31889377	0	31889377	3	4
-0	Chr1:31889485	0	31889485	4	3
-0	Chr1:31907055	0	31907055	3	1
-0	Chr1:31927140	0	31927140	4	3
-0	Chr1:31995350	0	31995350	1	3
-0	Chr1:32015975	0	32015975	4	1
-0	Chr1:32020723	0	32020723	1	3
-0	Chr1:32043018	0	32043018	1	4
-0	Chr1:32077755	0	32077755	2	4
-0	Chr1:32084837	0	32084837	1	4
-0	Chr1:32099526	0	32099526	4	1
-0	Chr1:32109172	0	32109172	1	4
-0	Chr1:32111760	0	32111760	1	4
-0	Chr1:32112621	0	32112621	1	4
-0	Chr1:32112622	0	32112622	4	1
-0	Chr1:32119131	0	32119131	4	1
-0	Chr1:32133860	0	32133860	1	4
-0	Chr1:32139702	0	32139702	1	4
-0	Chr1:32139722	0	32139722	1	4
-0	Chr1:32153707	0	32153707	1	4
-0	Chr1:32165197	0	32165197	4	2
-0	Chr1:32217903	0	32217903	1	4
-0	Chr1:32331774	0	32331774	4	2
-0	Chr1:32360773	0	32360773	1	4
-0	Chr1:32449071	0	32449071	4	2
-0	Chr1:32499753	0	32499753	3	1
-0	Chr1:32510853	0	32510853	1	3
-0	Chr1:32527882	0	32527882	3	1
-0	Chr1:32527981	0	32527981	3	1
-0	Chr1:32587107	0	32587107	4	1
-0	Chr1:32598032	0	32598032	4	1
-0	Chr1:32610324	0	32610324	3	1
-0	Chr1:32632614	0	32632614	2	1
-0	Chr1:32654599	0	32654599	3	4
-0	Chr1:32734148	0	32734148	1	4
-0	Chr1:32735557	0	32735557	1	4
-0	Chr1:32738743	0	32738743	1	4
-0	Chr1:32741911	0	32741911	1	4
-0	Chr1:32999294	0	32999294	1	2
-0	Chr1:33076887	0	33076887	4	1
-0	Chr1:33081781	0	33081781	4	2
-0	Chr1:33091343	0	33091343	1	4
-0	Chr1:33091346	0	33091346	4	1
-0	Chr1:33093016	0	33093016	4	1
-0	Chr1:33099125	0	33099125	4	1
-0	Chr1:33101161	0	33101161	1	3
-0	Chr1:33284722	0	33284722	3	1
-0	Chr1:33293797	0	33293797	4	1
-0	Chr1:33327786	0	33327786	3	1
-0	Chr1:33327839	0	33327839	4	1
-0	Chr1:33336223	0	33336223	2	4
-0	Chr1:33336318	0	33336318	3	1
-0	Chr1:33364796	0	33364796	3	2
-0	Chr1:33496512	0	33496512	1	3
-0	Chr1:33783168	0	33783168	2	4
-0	Chr1:33783179	0	33783179	4	1
-0	Chr1:33783182	0	33783182	1	4
-0	Chr1:33871635	0	33871635	1	3
-0	Chr1:33920570	0	33920570	1	3
-0	Chr1:33921227	0	33921227	1	3
-0	Chr1:33930751	0	33930751	4	1
-0	Chr1:33973542	0	33973542	3	4
-0	Chr1:33974278	0	33974278	2	3
-0	Chr1:33974856	0	33974856	1	3
-0	Chr1:34039707	0	34039707	2	4
-0	Chr1:34109518	0	34109518	1	4
-0	Chr1:34167104	0	34167104	3	1
-0	Chr1:34187435	0	34187435	4	1
-0	Chr1:34203919	0	34203919	2	1
-0	Chr1:34225494	0	34225494	4	1
-0	Chr1:34226293	0	34226293	1	4
-0	Chr1:34237359	0	34237359	1	4
-0	Chr1:34290046	0	34290046	1	2
-0	Chr1:34290097	0	34290097	1	4
-0	Chr1:34307022	0	34307022	3	1
-0	Chr1:34307825	0	34307825	2	4
-0	Chr1:34327301	0	34327301	1	4
-0	Chr1:34335058	0	34335058	1	4
-0	Chr1:34422874	0	34422874	3	1
-0	Chr1:34429355	0	34429355	4	1
-0	Chr1:34435745	0	34435745	4	1
-0	Chr1:34446335	0	34446335	1	4
-0	Chr1:34461102	0	34461102	4	1
-0	Chr1:34511690	0	34511690	4	2
-0	Chr1:34512803	0	34512803	1	4
-0	Chr1:34514240	0	34514240	4	1
-0	Chr1:34546434	0	34546434	1	4
-0	Chr1:34546490	0	34546490	4	1
-0	Chr1:34550321	0	34550321	4	1
-0	Chr1:34551808	0	34551808	3	1
-0	Chr1:34568945	0	34568945	4	1
-0	Chr1:34571150	0	34571150	4	1
-0	Chr1:34588553	0	34588553	2	4
-0	Chr1:34600584	0	34600584	1	4
-0	Chr1:34680506	0	34680506	4	2
-0	Chr1:34707422	0	34707422	1	4
-0	Chr1:34712326	0	34712326	2	4
-0	Chr1:34729316	0	34729316	4	3
-0	Chr1:34731317	0	34731317	1	4
-0	Chr1:34739250	0	34739250	1	4
-0	Chr1:34745122	0	34745122	3	1
-0	Chr1:34745238	0	34745238	3	1
-0	Chr1:34762181	0	34762181	3	4
-0	Chr1:34762285	0	34762285	3	1
-0	Chr1:34815236	0	34815236	3	4
-0	Chr1:34815295	0	34815295	1	4
-0	Chr1:34819411	0	34819411	1	4
-0	Chr1:34846870	0	34846870	4	1
-0	Chr1:34890450	0	34890450	4	1
-0	Chr1:34896321	0	34896321	1	4
-0	Chr1:34939106	0	34939106	2	1
-0	Chr1:34965744	0	34965744	4	2
-0	Chr1:34983193	0	34983193	4	1
-0	Chr1:35001790	0	35001790	1	4
-0	Chr1:35007259	0	35007259	1	4
-0	Chr1:35008760	0	35008760	1	4
-0	Chr1:35061621	0	35061621	3	1
-0	Chr1:35086602	0	35086602	4	2
-0	Chr1:35094231	0	35094231	1	4
-0	Chr1:35108977	0	35108977	4	1
-0	Chr1:35128150	0	35128150	4	1
-0	Chr1:35144020	0	35144020	3	4
-0	Chr1:35149305	0	35149305	1	4
-0	Chr1:35180600	0	35180600	1	4
-0	Chr1:35193967	0	35193967	4	2
-0	Chr1:35200915	0	35200915	4	1
-0	Chr1:35307114	0	35307114	2	4
-0	Chr1:35347362	0	35347362	2	1
-0	Chr1:35400756	0	35400756	1	4
-0	Chr1:35596032	0	35596032	4	1
-0	Chr1:35608865	0	35608865	1	4
-0	Chr1:35638872	0	35638872	3	1
-0	Chr1:35638984	0	35638984	3	1
-0	Chr1:35742358	0	35742358	1	4
-0	Chr1:35747789	0	35747789	1	4
-0	Chr1:35958247	0	35958247	1	2
-0	Chr1:35963677	0	35963677	2	4
-0	Chr1:35967289	0	35967289	1	4
-0	Chr1:36013936	0	36013936	1	3
-0	Chr1:36029152	0	36029152	4	1
-0	Chr1:36131798	0	36131798	3	1
-0	Chr1:36132244	0	36132244	1	4
-0	Chr1:36132263	0	36132263	1	2
-0	Chr1:36135270	0	36135270	4	1
-0	Chr1:36143155	0	36143155	1	3
-0	Chr1:36231871	0	36231871	4	1
-0	Chr1:36300575	0	36300575	4	1
-0	Chr1:36370973	0	36370973	1	4
-0	Chr1:36621359	0	36621359	1	4
-0	Chr1:36696208	0	36696208	1	3
-0	Chr1:36718312	0	36718312	1	4
-0	Chr1:36718341	0	36718341	3	1
-0	Chr1:36720865	0	36720865	1	4
-0	Chr1:36740809	0	36740809	4	1
-0	Chr1:36882749	0	36882749	4	1
-0	Chr1:36882752	0	36882752	1	4
-0	Chr1:36956337	0	36956337	2	4
-0	Chr1:37046646	0	37046646	3	2
-0	Chr1:37064309	0	37064309	3	1
-0	Chr1:37137468	0	37137468	1	4
-0	Chr1:37146622	0	37146622	1	2
-0	Chr1:37189534	0	37189534	1	4
-0	Chr1:37233741	0	37233741	1	4
-0	Chr1:37583011	0	37583011	4	2
-0	Chr1:37677255	0	37677255	4	1
-0	Chr1:37712681	0	37712681	4	2
-0	Chr1:37719614	0	37719614	4	1
-0	Chr1:37723312	0	37723312	4	2
-0	Chr1:37733048	0	37733048	4	1
-0	Chr1:37764798	0	37764798	4	1
-0	Chr1:37879500	0	37879500	1	4
-0	Chr1:37975727	0	37975727	4	1
-0	Chr1:38176391	0	38176391	4	1
-0	Chr1:38233881	0	38233881	2	4
-0	Chr1:38434703	0	38434703	1	3
-0	Chr1:38434765	0	38434765	4	1
-0	Chr1:38501100	0	38501100	1	4
-0	Chr1:38515009	0	38515009	4	1
-0	Chr1:38515041	0	38515041	4	1
-0	Chr1:38515044	0	38515044	1	4
-0	Chr1:38560569	0	38560569	1	4
-0	Chr1:38654332	0	38654332	4	1
-0	Chr1:38804627	0	38804627	1	4
-0	Chr1:38808462	0	38808462	4	2
-0	Chr1:38808537	0	38808537	4	1
-0	Chr1:38836845	0	38836845	4	1
-0	Chr1:38836848	0	38836848	1	4
-0	Chr1:38853248	0	38853248	4	1
-0	Chr1:38897705	0	38897705	4	1
-0	Chr1:38904917	0	38904917	3	1
-0	Chr1:38946119	0	38946119	1	4
-0	Chr1:38960837	0	38960837	4	1
-0	Chr1:38968039	0	38968039	1	4
-0	Chr1:38970709	0	38970709	1	4
-0	Chr1:38970729	0	38970729	1	3
-0	Chr1:38996984	0	38996984	1	4
-0	Chr1:39006552	0	39006552	4	2
-0	Chr1:39021617	0	39021617	4	1
-0	Chr1:39021775	0	39021775	1	2
-0	Chr1:39021790	0	39021790	1	4
-0	Chr1:39022928	0	39022928	1	4
-0	Chr1:39029042	0	39029042	4	1
-0	Chr1:39041227	0	39041227	4	1
-0	Chr1:39069588	0	39069588	4	1
-0	Chr1:39073687	0	39073687	2	4
-0	Chr1:39073738	0	39073738	4	1
-0	Chr1:39097844	0	39097844	3	1
-0	Chr1:39101078	0	39101078	4	1
-0	Chr1:39102140	0	39102140	3	1
-0	Chr1:39102194	0	39102194	1	4
-0	Chr1:39102232	0	39102232	2	3
-0	Chr1:39102838	0	39102838	4	1
-0	Chr1:39102892	0	39102892	3	1
-0	Chr1:39108593	0	39108593	1	4
-0	Chr1:39128415	0	39128415	1	4
-0	Chr1:39133282	0	39133282	4	1
-0	Chr1:39133285	0	39133285	1	4
-0	Chr1:39134928	0	39134928	1	2
-0	Chr1:39137464	0	39137464	2	3
-0	Chr1:39140488	0	39140488	4	1
-0	Chr1:39140501	0	39140501	4	1
-0	Chr1:39140562	0	39140562	1	4
-0	Chr1:39143929	0	39143929	1	4
-0	Chr1:39143942	0	39143942	3	1
-0	Chr1:39163136	0	39163136	3	2
-0	Chr1:39168222	0	39168222	1	4
-0	Chr1:39168248	0	39168248	3	1
-0	Chr1:39176048	0	39176048	2	1
-0	Chr1:39176083	0	39176083	3	2
-0	Chr1:39176096	0	39176096	4	1
-0	Chr1:39191305	0	39191305	1	4
-0	Chr1:39200362	0	39200362	1	4
-0	Chr1:39209686	0	39209686	1	4
-0	Chr1:39245265	0	39245265	2	4
-0	Chr1:39254110	0	39254110	2	3
-0	Chr1:39256552	0	39256552	4	3
-0	Chr1:39257845	0	39257845	1	4
-0	Chr1:39260372	0	39260372	1	4
-0	Chr1:39276276	0	39276276	3	2
-0	Chr1:39282424	0	39282424	1	4
-0	Chr1:39292491	0	39292491	4	1
-0	Chr1:39300391	0	39300391	4	1
-0	Chr1:39305750	0	39305750	4	1
-0	Chr1:39305832	0	39305832	1	4
-0	Chr1:39305833	0	39305833	4	1
-0	Chr1:39416338	0	39416338	4	3
-0	Chr1:39422113	0	39422113	4	1
-0	Chr1:39422116	0	39422116	1	4
-0	Chr1:39447228	0	39447228	1	4
-0	Chr1:39448870	0	39448870	3	1
-0	Chr1:39449861	0	39449861	1	4
-0	Chr1:39466839	0	39466839	1	4
-0	Chr1:39468037	0	39468037	4	1
-0	Chr1:39470931	0	39470931	4	1
-0	Chr1:39470949	0	39470949	4	1
-0	Chr1:39472460	0	39472460	3	1
-0	Chr1:39491532	0	39491532	1	4
-0	Chr1:39506634	0	39506634	3	1
-0	Chr1:39506654	0	39506654	1	4
-0	Chr1:39511185	0	39511185	1	3
-0	Chr1:39537504	0	39537504	1	4
-0	Chr1:39553116	0	39553116	1	4
-0	Chr1:39553118	0	39553118	4	1
-0	Chr1:39554204	0	39554204	4	3
-0	Chr1:39562746	0	39562746	2	4
-0	Chr1:39562839	0	39562839	4	1
-0	Chr1:39563425	0	39563425	1	4
-0	Chr1:39563606	0	39563606	4	1
-0	Chr1:39589518	0	39589518	4	1
-0	Chr1:39605046	0	39605046	1	4
-0	Chr1:39614442	0	39614442	1	4
-0	Chr1:39614444	0	39614444	3	4
-0	Chr1:39656022	0	39656022	4	2
-0	Chr1:39663360	0	39663360	4	1
-0	Chr1:39673624	0	39673624	2	3
-0	Chr1:39681600	0	39681600	1	2
-0	Chr1:39681665	0	39681665	1	4
-0	Chr1:39700372	0	39700372	1	4
-0	Chr1:39734217	0	39734217	2	4
-0	Chr1:39734228	0	39734228	1	4
-0	Chr1:39740660	0	39740660	1	4
-0	Chr1:39780551	0	39780551	1	4
-0	Chr1:39783176	0	39783176	1	4
-0	Chr1:39791872	0	39791872	4	1
-0	Chr1:39791875	0	39791875	1	4
-0	Chr1:39818103	0	39818103	1	3
-0	Chr1:39839114	0	39839114	4	1
-0	Chr1:39839354	0	39839354	1	4
-0	Chr1:39880825	0	39880825	4	1
-0	Chr1:39912134	0	39912134	1	2
-0	Chr1:39914173	0	39914173	1	3
-0	Chr1:40019475	0	40019475	1	2
-0	Chr1:40020184	0	40020184	1	4
-0	Chr1:40047201	0	40047201	4	1
-0	Chr1:40070589	0	40070589	4	1
-0	Chr1:40070640	0	40070640	1	4
-0	Chr1:40097004	0	40097004	1	3
-0	Chr1:40102224	0	40102224	4	2
-0	Chr1:40124493	0	40124493	2	4
-0	Chr1:40162664	0	40162664	1	2
-0	Chr1:40169490	0	40169490	4	1
-0	Chr1:40169725	0	40169725	1	3
-0	Chr1:40229425	0	40229425	2	4
-0	Chr1:40256509	0	40256509	4	1
-0	Chr1:40264576	0	40264576	4	1
-0	Chr1:40278864	0	40278864	4	1
-0	Chr1:40279140	0	40279140	1	3
-0	Chr1:40328142	0	40328142	4	1
-0	Chr1:40331205	0	40331205	4	1
-0	Chr1:40331613	0	40331613	1	4
-0	Chr1:40383282	0	40383282	1	4
-0	Chr1:40411351	0	40411351	1	4
-0	Chr1:40412326	0	40412326	4	1
-0	Chr1:40412384	0	40412384	3	1
-0	Chr1:40425786	0	40425786	4	1
-0	Chr1:40425980	0	40425980	2	1
-0	Chr1:40430300	0	40430300	4	1
-0	Chr1:40431468	0	40431468	4	3
-0	Chr1:40443092	0	40443092	3	4
-0	Chr1:40466784	0	40466784	4	2
-0	Chr1:40466808	0	40466808	1	4
-0	Chr1:40467144	0	40467144	4	1
-0	Chr1:40490613	0	40490613	4	1
-0	Chr1:40497209	0	40497209	2	4
-0	Chr1:40527519	0	40527519	1	2
-0	Chr1:40541490	0	40541490	1	4
-0	Chr1:40566515	0	40566515	2	4
-0	Chr1:40566534	0	40566534	1	4
-0	Chr1:40566620	0	40566620	1	3
-0	Chr1:40567925	0	40567925	4	1
-0	Chr1:40567928	0	40567928	4	1
-0	Chr1:40567983	0	40567983	1	3
-0	Chr1:40584846	0	40584846	4	1
-0	Chr1:40587621	0	40587621	3	2
-0	Chr1:40610397	0	40610397	4	1
-0	Chr1:40618489	0	40618489	4	3
-0	Chr1:40663740	0	40663740	4	2
-0	Chr1:40670043	0	40670043	3	1
-0	Chr1:40671084	0	40671084	4	2
-0	Chr1:40696256	0	40696256	1	3
-0	Chr1:40701640	0	40701640	4	1
-0	Chr1:40715751	0	40715751	2	1
-0	Chr1:40720697	0	40720697	4	2
-0	Chr1:40732591	0	40732591	4	1
-0	Chr1:40734965	0	40734965	2	4
-0	Chr1:40737721	0	40737721	4	3
-0	Chr1:40754319	0	40754319	3	1
-0	Chr1:40758533	0	40758533	1	3
-0	Chr1:40763346	0	40763346	4	1
-0	Chr1:40779806	0	40779806	4	1
-0	Chr1:40788831	0	40788831	1	3
-0	Chr1:40799111	0	40799111	1	4
-0	Chr1:40799114	0	40799114	4	1
-0	Chr1:40817991	0	40817991	4	3
-0	Chr1:40822307	0	40822307	1	4
-0	Chr1:40839200	0	40839200	1	4
-0	Chr1:40839223	0	40839223	2	4
-0	Chr1:40840213	0	40840213	4	1
-0	Chr1:40858290	0	40858290	1	4
-0	Chr1:40858295	0	40858295	2	1
-0	Chr1:40894634	0	40894634	3	1
-0	Chr1:40898694	0	40898694	4	1
-0	Chr1:40925279	0	40925279	1	4
-0	Chr1:40929959	0	40929959	2	4
-0	Chr1:40960080	0	40960080	3	1
-0	Chr1:40960462	0	40960462	1	4
-0	Chr1:41004912	0	41004912	1	4
-0	Chr1:41011386	0	41011386	4	1
-0	Chr1:41019437	0	41019437	4	1
-0	Chr1:41019737	0	41019737	4	2
-0	Chr1:41067201	0	41067201	1	3
-0	Chr1:41083723	0	41083723	1	3
-0	Chr1:41090716	0	41090716	2	4
-0	Chr1:41100340	0	41100340	1	4
-0	Chr1:41108816	0	41108816	1	4
-0	Chr1:41108887	0	41108887	4	1
-0	Chr1:41109440	0	41109440	4	1
-0	Chr1:41111944	0	41111944	4	1
-0	Chr1:41111947	0	41111947	1	4
-0	Chr1:41118560	0	41118560	4	2
-0	Chr1:41143869	0	41143869	4	1
-0	Chr1:41147615	0	41147615	1	4
-0	Chr1:41177801	0	41177801	4	2
-0	Chr1:41184713	0	41184713	1	2
-0	Chr1:41190745	0	41190745	2	4
-0	Chr1:41190886	0	41190886	2	4
-0	Chr1:41198840	0	41198840	3	1
-0	Chr1:41203547	0	41203547	4	2
-0	Chr1:41203607	0	41203607	1	4
-0	Chr1:41207247	0	41207247	2	3
-0	Chr1:41212475	0	41212475	3	4
-0	Chr1:41212487	0	41212487	1	4
-0	Chr1:41212533	0	41212533	2	4
-0	Chr1:41230880	0	41230880	3	1
-0	Chr1:41232475	0	41232475	1	3
-0	Chr1:41244079	0	41244079	3	4
-0	Chr1:41244197	0	41244197	4	2
-0	Chr1:41244212	0	41244212	4	1
-0	Chr1:41244216	0	41244216	1	4
-0	Chr1:41249220	0	41249220	1	3
-0	Chr1:41252326	0	41252326	4	1
-0	Chr1:41273858	0	41273858	1	4
-0	Chr1:41304331	0	41304331	1	2
-0	Chr1:41310422	0	41310422	4	1
-0	Chr1:41310467	0	41310467	1	4
-0	Chr1:41340158	0	41340158	1	3
-0	Chr1:41340177	0	41340177	3	1
-0	Chr1:41349818	0	41349818	4	1
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-0	Chr1:41998459	0	41998459	4	1
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-0	Chr1:42301791	0	42301791	4	1
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-0	Chr1:42357591	0	42357591	1	4
-0	Chr1:42367404	0	42367404	3	2
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-0	Chr1:42419046	0	42419046	1	4
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-0	Chr1:42421769	0	42421769	1	4
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-0	Chr1:42487487	0	42487487	4	1
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-0	Chr1:42548763	0	42548763	1	3
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+1	Chr1:43132577	0	43132577	4	2
+1	Chr1:43141118	0	43141118	2	4
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+1	Chr1:43154143	0	43154143	3	1
+1	Chr1:43158899	0	43158899	1	4
+1	Chr1:43179527	0	43179527	1	4
+1	Chr1:43214669	0	43214669	1	4
+1	Chr1:43229591	0	43229591	3	1
+1	Chr1:43249859	0	43249859	1	4
+1	Chr1:43269458	0	43269458	1	4
diff -r 98c37a5d67f4 -r c6640c49fd01 test-data/ped2bed-result.bim_old
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ped2bed-result.bim_old	Mon Apr 16 09:00:24 2018 -0400
@@ -0,0 +1,2013 @@
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diff -r 98c37a5d67f4 -r c6640c49fd01 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Feb 07 22:08:47 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="plink" version="1.90b4"/>
-    <package name="vcftools" version="0.1.14"/>
-</tool_dependency>