Mercurial > repos > dereeper > sniplay3
annotate MDSplot/mdsplot.sh @ 19:a0a95688cf17 draft
Uploaded
| author | dereeper |
|---|---|
| date | Thu, 26 Feb 2015 16:09:14 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| 19 | 1 #!/bin/bash |
| 2 | |
| 3 tool_path=$(dirname $0) | |
| 4 ped=$1 | |
| 5 map=$2 | |
| 6 fileout_label=$3 | |
| 7 fileout_matrix=$4 | |
| 8 fileout_plot=$5 | |
| 9 fileout_log=$6 | |
| 10 | |
| 11 rsync -a $ped input.ped | |
| 12 rsync -a $map input.map | |
| 13 | |
| 14 perl $tool_path/MDSbasedOnIBSmatrix.pl --in input --out $fileout_label | |
| 15 | |
| 16 rm -f input.ped input.map | |
| 17 | |
| 18 cp $fileout_label.ibs_matrix.txt $fileout_matrix | |
| 19 cp $fileout_label.mds_plot.txt $fileout_plot | |
| 20 cp input.plink.log $fileout_log | |
| 21 | |
| 22 | |
| 23 rm -f $fileout_label.ibs_matrix.txt $fileout_label.mds_plot.txt input.plink.log |