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20
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1 #!/bin/bash
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2 input=$1
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3 outputs=$2
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4 logs=$3
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5 best_k_output=$4
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6 best_k_logfile=$5
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7 kmin=$6
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8 kmax=$7
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9
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10 directory=`dirname $0`
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11 mkdir tmpdir$$
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12 cp -rf $input tmpdir$$/input
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13
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14 /usr/bin/perl $directory/Admixture.pl -i $input -o $outputs -k $kmin -m $kmax -d tmpdir$$ -p $directory
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15
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16 mv tmpdir$$/output $best_k_output
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17 mv tmpdir$$/log $best_k_logfile
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18 mv tmpdir$$/outputs.Q $outputs
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19 mv tmpdir$$/logs $logs
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20
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21
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