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15
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1 #!/bin/bash
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2
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3 analyseType=$1;
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4 out1=$2;
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5 out2=$3;
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6 out3=$4;
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7 log1=$5;
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8 galaxyOutDir=$6;
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9
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10
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11 mkdir $galaxyOutDir
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12
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13 # Suppression des 6 premiers arguments de la liste des arguments $@
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14 shift; shift; shift; shift; shift; shift;
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15
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16 if [[ $analyseType == glm ]]
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17 then
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18 run_pipeline.pl $* >> $log1 2>&1
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19 mv "$galaxyOutDir/TASSELGLM1.txt" $out1
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20 mv "$galaxyOutDir/TASSELGLM2.txt" $out2
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21 fi
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22
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23 if [[ $analyseType == mlm ]]
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24 then
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25 run_pipeline.pl $* >> $log1 2>&1
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26 mv "$galaxyOutDir/TASSELMLM1.txt" $out1
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27 mv "$galaxyOutDir/TASSELMLM2.txt" $out2
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28 mv "$galaxyOutDir/TASSELMLM3.txt" $out3
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29 fi
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30
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31 if [[ $analyseType == ld ]]
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32 then
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33 run_pipeline.pl $* >> $log1 2>&1
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34 fi
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35
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36
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37 if [[ $analyseType == ck ]]
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38 then
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39 run_pipeline.pl $* >> $log1 2>&1
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40 mv "$galaxyOutDir/kinship.txt" $out1
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41 fi
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