Mercurial > repos > dereeper > sniplay3
comparison VCFToolFilter/test-data/result.log @ 21:50bd37c444ac draft
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| author | dereeper |
|---|---|
| date | Mon, 23 Mar 2015 05:35:48 -0400 |
| parents | 8d2d0b6c3521 |
| children |
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| 20:13cff72ec2d3 | 21:50bd37c444ac |
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| 1 | |
| 2 VCFtools - v0.1.12b | |
| 3 (C) Adam Auton and Anthony Marcketta 2009 | |
| 4 | |
| 5 Parameters as interpreted: | |
| 6 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat | |
| 7 --chr chr1 | |
| 8 --recode-INFO-all | |
| 9 --maf 0.001 | |
| 10 --max-alleles 4 | |
| 11 --max-maf 0.5 | |
| 12 --min-alleles 2 | |
| 13 --max-missing 1 | |
| 14 --out filtered | |
| 15 --recode | |
| 16 --remove-filtered-all | |
| 17 | |
| 18 After filtering, kept 1 out of 1 Individuals | |
| 19 Outputting VCF file... | |
| 20 After filtering, kept 3616 out of a possible 4955 Sites | |
| 21 Run Time = 0.00 seconds |