Mercurial > repos > dereeper > sniplay3
comparison VCFToolsStats/test-data/result.log @ 18:7ba803afa41b draft
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| author | dereeper |
|---|---|
| date | Thu, 26 Feb 2015 16:02:46 -0500 |
| parents | |
| children |
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| 17:f21d05b9d3fe | 18:7ba803afa41b |
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| 1 | |
| 2 VCFtools - v0.1.12b | |
| 3 (C) Adam Auton and Anthony Marcketta 2009 | |
| 4 | |
| 5 Parameters as interpreted: | |
| 6 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat | |
| 7 --het | |
| 8 --out vcf_stats | |
| 9 --remove-filtered-all | |
| 10 | |
| 11 After filtering, kept 1 out of 1 Individuals | |
| 12 Outputting Individual Heterozygosity | |
| 13 Individual Heterozygosity: Only using biallelic SNPs. | |
| 14 After filtering, kept 4813 out of a possible 4955 Sites | |
| 15 Run Time = 0.00 seconds | |
| 16 | |
| 17 VCFtools - v0.1.12b | |
| 18 (C) Adam Auton and Anthony Marcketta 2009 | |
| 19 | |
| 20 Parameters as interpreted: | |
| 21 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat | |
| 22 --out vcf_stats | |
| 23 --TsTv-summary | |
| 24 --remove-filtered-all | |
| 25 | |
| 26 After filtering, kept 1 out of 1 Individuals | |
| 27 Outputting Ts/Tv summary | |
| 28 Ts/Tv ratio: 1.883 | |
| 29 After filtering, kept 4813 out of a possible 4955 Sites | |
| 30 Run Time = 0.00 seconds | |
| 31 | |
| 32 VCFtools - v0.1.12b | |
| 33 (C) Adam Auton and Anthony Marcketta 2009 | |
| 34 | |
| 35 Parameters as interpreted: | |
| 36 --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat | |
| 37 --missing-indv | |
| 38 --out vcf_stats | |
| 39 --remove-filtered-all | |
| 40 | |
| 41 After filtering, kept 1 out of 1 Individuals | |
| 42 Outputting Individual Missingness | |
| 43 After filtering, kept 4813 out of a possible 4955 Sites | |
| 44 Run Time = 0.00 seconds |