comparison admixture/admixture.sh @ 8:f629291bf98c draft

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author dereeper
date Fri, 20 Feb 2015 10:58:51 -0500
parents fb274c4ae95a
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7:f11604d28633 8:f629291bf98c
1 #!/bin/bash
2 input=$1
3 outputs=$2
4 logs=$3
5 best_k_output=$4
6 best_k_logfile=$5
7 kmin=$6
8 kmax=$7
9
10 directory=`dirname $0`
11 mkdir tmpdir$$
12 cp -rf $input tmpdir$$/input
13
14 /usr/bin/perl $directory/Admixture.pl -i $input -o $outputs -k $kmin -m $kmax -d tmpdir$$ -p $directory
15
16 mv tmpdir$$/output $best_k_output
17 mv tmpdir$$/log $best_k_logfile
18 mv tmpdir$$/outputs.Q $outputs
19 mv tmpdir$$/logs $logs
20
21