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comparison snpEff/snpEff-pipe.sh @ 24:21d878747ac6 draft default tip

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author dereeper
date Mon, 23 Mar 2015 05:53:20 -0400
parents a1ab979f4551
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23:a1ab979f4551 24:21d878747ac6
1 #!/bin/bash
2 vcf=$1
3 genome=$2
4 gff=$3
5 output=$4
6 html=$5
7 log=$6
8
9 directory=`dirname $0`
10
11 /usr/bin/perl $directory/SnpEff.pl -i $vcf -f $genome -g $gff -o $output -h $html >>$log 2>&1
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