Mercurial > repos > dereeper > sniplay3
diff admixture/admixture.sh @ 4:fb274c4ae95a draft
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author | dereeper |
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date | Fri, 20 Feb 2015 10:11:57 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/admixture/admixture.sh Fri Feb 20 10:11:57 2015 -0500 @@ -0,0 +1,21 @@ +#!/bin/bash +input=$1 +outputs=$2 +logs=$3 +best_k_output=$4 +best_k_logfile=$5 +kmin=$6 +kmax=$7 + +directory=`dirname $0` +mkdir tmpdir$$ +cp -rf $input tmpdir$$/input + +/usr/bin/perl $directory/Admixture.pl -i $input -o $outputs -k $kmin -m $kmax -d tmpdir$$ -p $directory + +mv tmpdir$$/output $best_k_output +mv tmpdir$$/log $best_k_logfile +mv tmpdir$$/outputs.Q $outputs +mv tmpdir$$/logs $logs + +