Mercurial > repos > dereeper > sniplay3
diff VCFToolsStats/test-data/result.log @ 24:21d878747ac6 draft default tip
Uploaded
author | dereeper |
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date | Mon, 23 Mar 2015 05:53:20 -0400 |
parents | 7ba803afa41b |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/VCFToolsStats/test-data/result.log Mon Mar 23 05:53:20 2015 -0400 @@ -0,0 +1,44 @@ + +VCFtools - v0.1.12b +(C) Adam Auton and Anthony Marcketta 2009 + +Parameters as interpreted: + --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat + --het + --out vcf_stats + --remove-filtered-all + +After filtering, kept 1 out of 1 Individuals +Outputting Individual Heterozygosity + Individual Heterozygosity: Only using biallelic SNPs. +After filtering, kept 4813 out of a possible 4955 Sites +Run Time = 0.00 seconds + +VCFtools - v0.1.12b +(C) Adam Auton and Anthony Marcketta 2009 + +Parameters as interpreted: + --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat + --out vcf_stats + --TsTv-summary + --remove-filtered-all + +After filtering, kept 1 out of 1 Individuals +Outputting Ts/Tv summary +Ts/Tv ratio: 1.883 +After filtering, kept 4813 out of a possible 4955 Sites +Run Time = 0.00 seconds + +VCFtools - v0.1.12b +(C) Adam Auton and Anthony Marcketta 2009 + +Parameters as interpreted: + --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat + --missing-indv + --out vcf_stats + --remove-filtered-all + +After filtering, kept 1 out of 1 Individuals +Outputting Individual Missingness +After filtering, kept 4813 out of a possible 4955 Sites +Run Time = 0.00 seconds