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diff VCFToolsStats/test-data/result.log @ 24:21d878747ac6 draft default tip

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author dereeper
date Mon, 23 Mar 2015 05:53:20 -0400
parents 7ba803afa41b
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/VCFToolsStats/test-data/result.log	Mon Mar 23 05:53:20 2015 -0400
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+
+VCFtools - v0.1.12b
+(C) Adam Auton and Anthony Marcketta 2009
+
+Parameters as interpreted:
+	--vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
+	--het
+	--out vcf_stats
+	--remove-filtered-all
+
+After filtering, kept 1 out of 1 Individuals
+Outputting Individual Heterozygosity
+	Individual Heterozygosity: Only using biallelic SNPs.
+After filtering, kept 4813 out of a possible 4955 Sites
+Run Time = 0.00 seconds
+
+VCFtools - v0.1.12b
+(C) Adam Auton and Anthony Marcketta 2009
+
+Parameters as interpreted:
+	--vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
+	--out vcf_stats
+	--TsTv-summary
+	--remove-filtered-all
+
+After filtering, kept 1 out of 1 Individuals
+Outputting Ts/Tv summary
+Ts/Tv ratio: 1.883
+After filtering, kept 4813 out of a possible 4955 Sites
+Run Time = 0.00 seconds
+
+VCFtools - v0.1.12b
+(C) Adam Auton and Anthony Marcketta 2009
+
+Parameters as interpreted:
+	--vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
+	--missing-indv
+	--out vcf_stats
+	--remove-filtered-all
+
+After filtering, kept 1 out of 1 Individuals
+Outputting Individual Missingness
+After filtering, kept 4813 out of a possible 4955 Sites
+Run Time = 0.00 seconds