Mercurial > repos > dereeper > sniplay3

diff snpEff/snpEff-pipe.sh @ 24:21d878747ac6 draft default tip

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author dereeper
date Mon, 23 Mar 2015 05:53:20 -0400
parents a1ab979f4551
children
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--- a/snpEff/snpEff-pipe.sh	Mon Mar 23 05:52:17 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,14 +0,0 @@
-#!/bin/bash
-vcf=$1
-genome=$2
-gff=$3
-output=$4
-html=$5
-log=$6
-
-directory=`dirname $0`
- 
-/usr/bin/perl $directory/SnpEff.pl -i $vcf -f $genome -g $gff -o $output -h $html >>$log 2>&1
-
-
-