Mercurial > repos > dereeper > sniplay3

view VCFToolsStats/test-data/result.log @ 19:a0a95688cf17 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dereeper
date Thu, 26 Feb 2015 16:09:14 -0500
parents 7ba803afa41b
children
line wrap: on
line source


VCFtools - v0.1.12b
(C) Adam Auton and Anthony Marcketta 2009

Parameters as interpreted:
	--vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
	--het
	--out vcf_stats
	--remove-filtered-all

After filtering, kept 1 out of 1 Individuals
Outputting Individual Heterozygosity
	Individual Heterozygosity: Only using biallelic SNPs.
After filtering, kept 4813 out of a possible 4955 Sites
Run Time = 0.00 seconds

VCFtools - v0.1.12b
(C) Adam Auton and Anthony Marcketta 2009

Parameters as interpreted:
	--vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
	--out vcf_stats
	--TsTv-summary
	--remove-filtered-all

After filtering, kept 1 out of 1 Individuals
Outputting Ts/Tv summary
Ts/Tv ratio: 1.883
After filtering, kept 4813 out of a possible 4955 Sites
Run Time = 0.00 seconds

VCFtools - v0.1.12b
(C) Adam Auton and Anthony Marcketta 2009

Parameters as interpreted:
	--vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat
	--missing-indv
	--out vcf_stats
	--remove-filtered-all

After filtering, kept 1 out of 1 Individuals
Outputting Individual Missingness
After filtering, kept 4813 out of a possible 4955 Sites
Run Time = 0.00 seconds