view admixture/.svn/text-base/admixture.sh.svn-base @ 23:a1ab979f4551 draft

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author dereeper
date Mon, 23 Mar 2015 05:52:17 -0400
parents 13cff72ec2d3
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#!/bin/bash
input=$1
outputs=$2
logs=$3
best_k_output=$4
best_k_logfile=$5
kmin=$6
kmax=$7

directory=`dirname $0`
mkdir tmpdir$$
cp -rf $input tmpdir$$/input
 
/usr/bin/perl $directory/Admixture.pl -i $input -o $outputs -k $kmin -m $kmax -d tmpdir$$ -p $directory

mv tmpdir$$/output $best_k_output
mv tmpdir$$/log $best_k_logfile
mv tmpdir$$/outputs.Q $outputs
mv tmpdir$$/logs $logs