Mercurial > repos > dereeper > sniplay3
view admixture/admixture.sh @ 17:f21d05b9d3fe draft
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author | dereeper |
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date | Thu, 26 Feb 2015 15:23:05 -0500 |
parents | fb274c4ae95a |
children |
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#!/bin/bash input=$1 outputs=$2 logs=$3 best_k_output=$4 best_k_logfile=$5 kmin=$6 kmax=$7 directory=`dirname $0` mkdir tmpdir$$ cp -rf $input tmpdir$$/input /usr/bin/perl $directory/Admixture.pl -i $input -o $outputs -k $kmin -m $kmax -d tmpdir$$ -p $directory mv tmpdir$$/output $best_k_output mv tmpdir$$/log $best_k_logfile mv tmpdir$$/outputs.Q $outputs mv tmpdir$$/logs $logs