Mercurial > repos > dereeper > sniplay3_gwas_workflow
annotate Galaxy-Workflow-SNiPlay3_GWAS.ga @ 0:8aba23fae548 draft default tip
planemo upload commit 9f362f944b3ce480662bec519a3d7c7616454b4c
author | dereeper |
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date | Fri, 24 Aug 2018 08:06:01 -0400 |
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1 { |
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2 "a_galaxy_workflow": "true", |
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3 "annotation": "", |
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4 "format-version": "0.1", |
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5 "name": "SNiPlay3_GWAS", |
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6 "steps": { |
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7 "0": { |
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8 "annotation": "", |
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9 "content_id": null, |
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10 "id": 0, |
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11 "input_connections": {}, |
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12 "inputs": [ |
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13 { |
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14 "description": "", |
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15 "name": "VCF file" |
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16 } |
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17 ], |
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18 "label": null, |
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19 "name": "Input dataset", |
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20 "outputs": [], |
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21 "position": { |
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22 "left": 199.99998474121094, |
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23 "top": 287.03334045410156 |
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24 }, |
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25 "tool_errors": null, |
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26 "tool_id": null, |
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27 "tool_state": "{\"name\": \"VCF file\"}", |
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28 "tool_version": null, |
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29 "type": "data_input", |
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30 "uuid": "d3d80126-b2de-4655-b22b-46288f7b35e3", |
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31 "workflow_outputs": [] |
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32 }, |
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33 "1": { |
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34 "annotation": "", |
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35 "content_id": "toolshed.g2.bx.psu.edu/repos/dereeper/snmf/snmf/1.2", |
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36 "id": 1, |
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37 "input_connections": { |
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38 "vcf": { |
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39 "id": 0, |
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40 "output_name": "output" |
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41 } |
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42 }, |
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43 "inputs": [ |
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44 { |
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45 "description": "runtime parameter for tool sNMF", |
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46 "name": "vcf" |
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47 } |
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48 ], |
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49 "label": null, |
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50 "name": "sNMF", |
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51 "outputs": [ |
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52 { |
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53 "name": "best_k_output", |
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54 "type": "txt" |
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55 }, |
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56 { |
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57 "name": "best_k_groups", |
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58 "type": "txt" |
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59 }, |
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60 { |
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61 "name": "best_k_logfile", |
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62 "type": "txt" |
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63 }, |
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64 { |
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65 "name": "outputs", |
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66 "type": "txt" |
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67 }, |
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68 { |
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69 "name": "logs", |
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70 "type": "txt" |
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71 } |
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72 ], |
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73 "position": { |
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74 "left": 600.3666839599609, |
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75 "top": 115.11666870117188 |
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76 }, |
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77 "post_job_actions": { |
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78 "HideDatasetActionbest_k_logfile": { |
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79 "action_arguments": {}, |
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80 "action_type": "HideDatasetAction", |
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81 "output_name": "best_k_logfile" |
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82 }, |
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83 "HideDatasetActionlogs": { |
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84 "action_arguments": {}, |
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85 "action_type": "HideDatasetAction", |
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86 "output_name": "logs" |
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87 } |
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88 }, |
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89 "tool_errors": null, |
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90 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/snmf/snmf/1.2", |
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91 "tool_shed_repository": { |
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92 "changeset_revision": null, |
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93 "name": "snmf", |
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94 "owner": "dereeper", |
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95 "tool_shed": "toolshed.g2.bx.psu.edu" |
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96 }, |
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97 "tool_state": "{\"__page__\": 0, \"vcf\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"kmin\": \"\\\"2\\\"\", \"threshold_group\": \"\\\"50\\\"\", \"kmax\": \"\\\"5\\\"\"}", |
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98 "tool_version": null, |
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99 "type": "tool", |
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100 "uuid": "bfec040d-1a6e-4f57-ba51-65074e6959d7", |
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101 "workflow_outputs": [ |
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102 { |
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103 "label": null, |
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104 "output_name": "outputs", |
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105 "uuid": "4865afb3-a9f9-459b-81d1-568568d33469" |
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106 }, |
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107 { |
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108 "label": null, |
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109 "output_name": "best_k_groups", |
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110 "uuid": "8c580ae4-eda9-4702-9026-01565d4486a3" |
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111 }, |
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112 { |
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113 "label": null, |
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114 "output_name": "best_k_output", |
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115 "uuid": "6afc5b5b-6870-4832-bc9d-26bd0686cf55" |
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116 } |
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117 ] |
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237 "action_type": "HideDatasetAction", |
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238 "output_name": "log" |
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239 } |
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240 }, |
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241 "tool_errors": null, |
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242 "tool_id": "toolshed.g2.bx.psu.edu/repos/dereeper/tassel5/Tassel/5.0", |
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243 "tool_shed_repository": { |
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244 "changeset_revision": null, |
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245 "name": "tassel5", |
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246 "owner": "dereeper", |
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247 "tool_shed": "toolshed.g2.bx.psu.edu" |
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248 }, |
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249 "tool_state": "{\"__page__\": 0, \"hapmap\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"analysis_opts\": \"{\\\"trait\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"fonction_selector\\\": \\\"glm\\\", \\\"add_file\\\": {\\\"additional_file_selector\\\": \\\"yes\\\", \\\"structure\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0}, \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"filterAlignMinFreq\": \"\\\"0.05\\\"\"}", |
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250 "tool_version": null, |
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251 "type": "tool", |
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252 "uuid": "8863d2f5-33ee-433e-aee0-b1f8eed8949b", |
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253 "workflow_outputs": [ |
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254 { |
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255 "label": null, |
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256 "output_name": "output2", |
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257 "uuid": "4d925953-f4a0-422f-b390-4f09f9430c98" |
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258 }, |
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259 { |
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260 "label": null, |
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261 "output_name": "output3", |
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262 "uuid": "9d05f670-1ee4-47df-946c-eb2807b89152" |
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263 }, |
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264 { |
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265 "label": null, |
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266 "output_name": "output1", |
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267 "uuid": "0bbd4038-69d6-4f32-a790-32652344fe0d" |
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268 } |
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269 ] |
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270 } |
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271 }, |
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272 "uuid": "9f935e94-1f19-4365-aa1c-facc8c48ed90" |
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273 } |