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0
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1 #!/bin/bash
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2 vcf=$1
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3 outputs=$2
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4 logs=$3
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5 best_k_output=$4
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6 best_k_logfile=$5
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7 kmin=$6
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8 kmax=$7
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9 groups=$8
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10 threshold_group=$9
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8
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11 entropy=${10}
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0
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12
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13 directory=`dirname $0`
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14 mkdir tmpdir$$
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15
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16
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17 perl $directory/Snmf.pl -i $vcf -o $outputs -k $kmin -m $kmax -d tmpdir$$ -t $threshold_group
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18
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19 mv tmpdir$$/output $best_k_output
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20 mv tmpdir$$/log $best_k_logfile
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21 mv tmpdir$$/outputs.Q $outputs
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22 mv tmpdir$$/logs $logs
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23 mv tmpdir$$/groups $groups
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8
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24 mv tmpdir$$/entropy $entropy
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0
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25
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26
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