Mercurial > repos > dereeper > snpeff_from_gff_vcf
annotate test-data/snpeff_output.vcf @ 1:633d264f8888 draft default tip
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
| author | dereeper |
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| date | Mon, 16 Apr 2018 08:56:29 -0400 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1 ##fileformat=VCFv4.2 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2 ##fileDate=... |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3 ##source=PLINKv1.90 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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4 ##contig=<ID=3,length=19999036> |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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5 ##INFO=<ID=PR,Number=0,Type=Flag,Description="Provisional reference allele, may not be based on real reference genome"> |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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7 ##SnpEffVersion="4.3t (build 2017-11-24 10:18), by Pablo Cingolani" |
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8 ##SnpEffCmd="SnpEff -o vcf -no-downstream -no-upstream myspecies -s ... ... " |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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9 ##INFO=<ID=ANN,Number=.,Type=String,Description="Functional annotations: 'Allele | Annotation | Annotation_Impact | Gene_Name | Gene_ID | Feature_Type | Feature_ID | Transcript_BioType | Rank | HGVS.c | HGVS.p | cDNA.pos / cDNA.length | CDS.pos / CDS.length | AA.pos / AA.length | Distance | ERRORS / WARNINGS / INFO' "> |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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10 ##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected'"> |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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11 ##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected'"> |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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12 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT c88dcbba.0 0b7d031b.0 16ef3c90.0 26863647.0 7f32098d.0 608b0d34.0 46aa9c6a.0 d00c1e13.0 8366125c.0 a358fb3f.0 2a5ee06d.0 df3c89f8.0 78f9e9fe.0 04aca4b5.0 04704bb4.0 5cf82125.0 559cd294.0 98ca16ae.0 1865f890.0 66391666.0 824bd841.0 971d8d35.0 1580b445.0 3476f3f1.0 6fe1d5f1.0 727d7321.0 8a1459b3.0 1a210383.0 2aa697f5.0 a7596568.0 41872470.0 d9a92db4.0 66b6164a.0 5a43ae22.0 6ac8c69b.0 3afe78bc.0 bf19b73d.0 d7e9eece.0 82e8b7f7.0 60121701.0 6cf8dce4.0 3051c486.0 59afa5e3.0 68b91064.0 ae03e236.0 ddaead61.0 aa6cd0c1.0 e1d9a122.0 fb625f89.0 cb0723a4.0 98042619.0 aca14ce9.0 bada3969.0 5efeb5b6.0 fe614ecb.0 bea7cbcf.0 1abb6b2c.0 4506b36e.0 addc58a4.0 f5f3d6ea.0 e1838272.0 d2dd5d08.0 4874cc49.0 a6e508e5.0 61544ce0.0 429e439a.0 522427a2.0 b41ea6b3.0 773db8bf.0 ce7eb496.0 2eafa96f.0 533385bb.0 1f8b989f.0 44fe4cf1.0 07990ed9.0 f40ea464.0 c7913661.0 c54cc672.0 66c5c186.0 c111198a.0 5b45a727.0 de954805.0 2552833e.0 c840a160.0 529e807c.0 1fb8be6d.0 a85f295d.0 cb0c4d54.0 c3b20632.0 3f0e6324.0 178d96de.0 225b17eb.0 99d33763.0 d10e2929.0 8f99b9e2.0 f6801eb5.0 e2606999.0 b308ee1b.0 a7e6bc0f.0 84e1a141.0 bcea78dd.0 e1d1c3b0.0 01a58510.0 9c00ac3a.0 71ad2583.0 ea2ae002.0 bc730b70.0 9c62b49e.0 5da42fd9.0 3b7bddf8.0 45388f1b.0 cd33864f.0 28dd8a58.0 1de0e087.0 07fd6392.0 f8c60a5c.0 25cdd8ae.0 23b0b44c.0 484b2a0f.0 82e17a03.0 be2b0b83.0 260c1d61.0 e30161a0.0 115e701d.0 4c13a3a3.0 08beaab3.0 68f6c96b.0 2d661c20.0 fb2aa5d5.0 2ece01ea.0 e048f5ff.0 ee58d650.0 5872a595.0 5975119a.0 e3fc5497.0 a51b2a39.0 d66638c8.0 a5ef5ab7.0 7d71b69f.0 b4b4df33.0 14d89242.0 9bdaf6eb.0 c949dc7c.0 d4dd88ed.0 8fa373e8.0 eaa3a28a.0 8609fb0e.0 a6d8f1fd.0 be814f56.0 abc6960f.0 832b2be7.0 5776533f.0 3d3f5b4e.0 bc700e39.0 946e0202.0 47c2ea40.0 c86d6702.0 b95ce243.0 2e05f839.0 79ec00de.0 f292fe0a.0 a65ecc2d.0 2b962329.0 718e09f3.0 0a5fbba4.0 89d2c5a0.0 61d7b167.0 2bfcbe44.0 90bc17da.0 65329b91.0 e069425a.0 5325e87e.0 7578b606.0 6fb127b9.0 3b8476cc.0 c8fc9010.0 fd96414a.0 7f0e7041.0 a0c41ad0.0 1e5e8456.0 ab4a346a.0 77bec15a.0 2bca2f34.0 9651d67d.0 9a5569b2.0 b961cc90.0 e42dd51d.0 911f856a.0 53e1db9a.0 e5b216b3.0 18484bd4.0 64f24c90.0 9cbb223a.0 f7e1ce6e.0 9e44e293.0 eac19fb8.0 76f56677.0 87621330.0 dc2cf39b.0 17627a92.0 7126c359.0 c20dfc59.0 cbd6b346.0 f30e146b.0 1510e4aa.0 cf44b628.0 bd7aaa87.0 e8f708a5.0 2b4e06fe.0 3eb8fab5.0 aeed4684.0 328163e1.0 c7aeb39f.0 3e58f34c.0 cc0ef8cf.0 30646147.0 192e24ab.0 5ef1be74.0 71d5fcf4.0 714ac141.0 0f6a67da.0 a796716d.0 a8319fc6.0 93387d96.0 5384be83.0 8fafd383.0 cff871e8.0 2a7724c1.0 773e969e.0 743f41c1.0 1a946dc6.0 9ac72c9e.0 5505a767.0 8cd35626.0 fdd98970.0 86556239.0 44aeff79.0 c7d2513e.0 2a9d8d47.0 39dd7feb.0 c0936cf1.0 5aa7968d.0 73c4fdfb.0 5ae0bd70.0 122a975b.0 2b81cf74.0 9b2223bb.0 bf18cbae.0 16463092.0 7a723d9e.0 c8a73fe7.0 5b144b9c.0 3aa51818.0 4f643bf5.0 3fb62843.0 c0d6eca3.0 43f72773.0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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13 3 15001183 SNP-3.14999829. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26210|LOC_Os03g26210|transcript|LOC_Os03g26210.1|protein_coding|3/4|c.294C>A|p.Leu98Leu|491/1358|294/825|98/274||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g26210|LOC_Os03g26210|transcript|LOC_Os03g26210.3|protein_coding|4/5|c.228C>A|p.Leu76Leu|369/1236|228/759|76/252||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g26210|LOC_Os03g26210|transcript|LOC_Os03g26210.2|protein_coding|4/5|c.228C>A|p.Leu76Leu|371/1238|228/759|76/252||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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14 3 15001469 SNP-3.15000115. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26210|LOC_Os03g26210|transcript|LOC_Os03g26210.1|protein_coding|4/4|c.425A>G|p.Ala142Gly|622/1358|425/825|142/274||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g26210|LOC_Os03g26210|transcript|LOC_Os03g26210.3|protein_coding|5/5|c.359A>G|p.Ala120Gly|500/1236|359/759|120/252||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g26210|LOC_Os03g26210|transcript|LOC_Os03g26210.2|protein_coding|5/5|c.359A>G|p.Ala120Gly|502/1238|359/759|120/252||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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15 3 15002088 SNP-3.15000734. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g26210|LOC_Os03g26210|transcript|LOC_Os03g26210.1|protein_coding|4/4|c.*219A>G|||||219|WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g26210|LOC_Os03g26210|transcript|LOC_Os03g26210.3|protein_coding|5/5|c.*219A>G|||||219|WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g26210|LOC_Os03g26210|transcript|LOC_Os03g26210.2|protein_coding|5/5|c.*219A>G|||||219|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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16 3 15002962 SNP-3.15001608. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26220|LOC_Os03g26220|transcript|LOC_Os03g26220.1|protein_coding|2/3|c.565G>T|p.Ser189Ser|577/942|565/930|189/309||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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17 3 15006811 SNP-3.15005457. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g26229|LOC_Os03g26229|transcript|LOC_Os03g26229.1|protein_coding|2/3|c.-2C>A|||||2|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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18 3 15008914 SNP-3.15007560. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26240|LOC_Os03g26240|transcript|LOC_Os03g26240.1|protein_coding|2/2|c.102G>T|p.Leu34Leu|102/261|102/261|34/86|| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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19 3 15009272 SNP-3.15007918. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26240|LOC_Os03g26240|transcript|LOC_Os03g26240.1|protein_coding|1/1|c.28+154T>C|||||| GT 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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20 3 15009454 SNP-3.15008100. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26240-LOC_Os03g26250|LOC_Os03g26240-LOC_Os03g26250|intergenic_region|LOC_Os03g26240-LOC_Os03g26250|||n.15009454A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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21 3 15010303 SNP-3.15008949. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26240-LOC_Os03g26250|LOC_Os03g26240-LOC_Os03g26250|intergenic_region|LOC_Os03g26240-LOC_Os03g26250|||n.15010303A>G|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. 0/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 1/1 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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22 3 15012222 SNP-3.15010868. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26250-LOC_Os03g26260|LOC_Os03g26250-LOC_Os03g26260|intergenic_region|LOC_Os03g26250-LOC_Os03g26260|||n.15012222A>G|||||| GT 0/0 1/1 ./. 0/1 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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23 3 15013793 SNP-3.15012439. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26250-LOC_Os03g26260|LOC_Os03g26250-LOC_Os03g26260|intergenic_region|LOC_Os03g26250-LOC_Os03g26260|||n.15013793C>A|||||| GT ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/1 0/1 0/1 ./. 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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24 3 15016928 SNP-3.15015574. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|2/3|c.86C>A|p.Arg29His|86/2484|86/2484|29/827||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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25 3 15016994 SNP-3.15015640. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|2/3|c.152A>G|p.Arg51Arg|152/2484|152/2484|51/827||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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26 3 15017069 SNP-3.15015715. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|2/3|c.227A>G|p.Ser76Cys|227/2484|227/2484|76/827||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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27 3 15017825 SNP-3.15016471. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|2/2|c.233+750A>G|||||| GT 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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28 3 15021297 SNP-3.15019943. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|3/3|c.476A>G|p.Pro159Arg|476/2484|476/2484|159/827||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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29 3 15021415 SNP-3.15020061. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|3/3|c.594A>G|p.Ile198Met|594/2484|594/2484|198/827|| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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30 3 15021478 SNP-3.15020124. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|3/3|c.657A>G|p.Val219Val|657/2484|657/2484|219/827||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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31 3 15021637 SNP-3.15020283. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|3/3|c.816A>G|p.Ala272Ala|816/2484|816/2484|272/827||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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32 3 15022555 SNP-3.15021201. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|3/3|c.1734A>G|p.Pro578Pro|1734/2484|1734/2484|578/827||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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33 3 15022888 SNP-3.15021534. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26260|LOC_Os03g26260|transcript|LOC_Os03g26260.1|protein_coding|3/3|c.2067A>G|p.His689Gln|2067/2484|2067/2484|689/827||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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34 3 15023579 SNP-3.15022225. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26260-LOC_Os03g26280|LOC_Os03g26260-LOC_Os03g26280|intergenic_region|LOC_Os03g26260-LOC_Os03g26280|||n.15023579A>G|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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35 3 15025795 SNP-3.15024441. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26260-LOC_Os03g26280|LOC_Os03g26260-LOC_Os03g26280|intergenic_region|LOC_Os03g26260-LOC_Os03g26280|||n.15025795A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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36 3 15029041 SNP-3.15027687. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26260-LOC_Os03g26280|LOC_Os03g26260-LOC_Os03g26280|intergenic_region|LOC_Os03g26260-LOC_Os03g26280|||n.15029041A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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37 3 15029887 SNP-3.15028533. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26280|LOC_Os03g26280|transcript|LOC_Os03g26280.1|protein_coding|1/3|c.194A>G|p.Leu65Arg|194/255|194/255|65/84||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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38 3 15030098 SNP-3.15028744. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26280|LOC_Os03g26280|transcript|LOC_Os03g26280.1|protein_coding|1/2|c.207+198A>G|||||| GT 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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39 3 15031273 SNP-3.15029919. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26280-LOC_Os03g26290|LOC_Os03g26280-LOC_Os03g26290|intergenic_region|LOC_Os03g26280-LOC_Os03g26290|||n.15031273C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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40 3 15032589 SNP-3.15031235. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26280-LOC_Os03g26290|LOC_Os03g26280-LOC_Os03g26290|intergenic_region|LOC_Os03g26280-LOC_Os03g26290|||n.15032589A>G|||||| GT 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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41 3 15032652 SNP-3.15031298. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26280-LOC_Os03g26290|LOC_Os03g26280-LOC_Os03g26290|intergenic_region|LOC_Os03g26280-LOC_Os03g26290|||n.15032652A>G|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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42 3 15033259 SNP-3.15031905. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26280-LOC_Os03g26290|LOC_Os03g26280-LOC_Os03g26290|intergenic_region|LOC_Os03g26280-LOC_Os03g26290|||n.15033259A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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43 3 15041164 SNP-3.15039810. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26300-LOC_Os03g26310|LOC_Os03g26300-LOC_Os03g26310|intergenic_region|LOC_Os03g26300-LOC_Os03g26310|||n.15041164A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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44 3 15045891 SNP-3.15044537. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26310-LOC_Os03g26329|LOC_Os03g26310-LOC_Os03g26329|intergenic_region|LOC_Os03g26310-LOC_Os03g26329|||n.15045891A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. ./. ./. 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 1/1 0/1 0/1 0/1 0/1 ./. 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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45 3 15048277 SNP-3.15046923. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g26329|LOC_Os03g26329|transcript|LOC_Os03g26329.1|protein_coding|2/8|c.1445C>A|p.Val482Asp|1445/3933|1445/3933|482/1310||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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46 3 15048568 SNP-3.15047214. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26329|LOC_Os03g26329|transcript|LOC_Os03g26329.1|protein_coding|2/8|c.1736A>G|p.Pro579Arg|1736/3933|1736/3933|579/1310||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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47 3 15063744 SNP-3.15062390. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26329-LOC_Os03g26350|LOC_Os03g26329-LOC_Os03g26350|intergenic_region|LOC_Os03g26329-LOC_Os03g26350|||n.15063744A>G|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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48 3 15063983 SNP-3.15062629. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26329-LOC_Os03g26350|LOC_Os03g26329-LOC_Os03g26350|intergenic_region|LOC_Os03g26329-LOC_Os03g26350|||n.15063983A>G|||||| GT 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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49 3 15064067 SNP-3.15062713. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26329-LOC_Os03g26350|LOC_Os03g26329-LOC_Os03g26350|intergenic_region|LOC_Os03g26329-LOC_Os03g26350|||n.15064067A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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50 3 15064405 SNP-3.15063051. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|2/9|c.109A>G|p.Gly37Gly|109/2523|109/2523|37/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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51 3 15065635 SNP-3.15064281. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|4/9|c.496A>G|p.Trp166Gly|496/2523|496/2523|166/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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52 3 15065828 SNP-3.15064474. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|4/8|c.515+174A>G|||||| GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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53 3 15067575 SNP-3.15066221. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|4/8|c.516-13A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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54 3 15067632 SNP-3.15066278. A G . . PR;ANN=G|stop_gained|HIGH|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|5/9|c.560A>G|p.Ser187*|560/2523|560/2523|187/840||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g26350|LOC_Os03g26350|1|1.00);NMD=(LOC_Os03g26350|LOC_Os03g26350|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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55 3 15067704 SNP-3.15066350. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|5/9|c.632A>G|p.Pro211Arg|632/2523|632/2523|211/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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56 3 15067776 SNP-3.15066422. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|5/9|c.704A>G|p.Val235Gly|704/2523|704/2523|235/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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57 3 15067863 SNP-3.15066509. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|5/9|c.791C>A|p.His264His|791/2523|791/2523|264/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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58 3 15067938 SNP-3.15066584. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|5/9|c.866A>G|p.Pro289Arg|866/2523|866/2523|289/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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59 3 15067978 SNP-3.15066624. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|5/9|c.906A>G|p.Ser302Arg|906/2523|906/2523|302/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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60 3 15068177 SNP-3.15066823. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|5/9|c.1105A>G|p.Ala369Ala|1105/2523|1105/2523|369/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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61 3 15068200 SNP-3.15066846. A G . . PR;ANN=G|stop_gained|HIGH|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|5/9|c.1128A>G|p.Tyr376*|1128/2523|1128/2523|376/840||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g26350|LOC_Os03g26350|1|1.00);NMD=(LOC_Os03g26350|LOC_Os03g26350|1|1.00) GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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62 3 15068596 SNP-3.15067242. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|6/9|c.1356A>G|p.Cys452Trp|1356/2523|1356/2523|452/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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63 3 15069419 SNP-3.15068065. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|7/9|c.2086A>G|p.Gly696Gly|2086/2523|2086/2523|696/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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64 3 15069431 SNP-3.15068077. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|7/9|c.2098A>G|p.Pro700Ala|2098/2523|2098/2523|700/840||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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65 3 15069683 SNP-3.15068329. A G . . PR;ANN=G|splice_donor_variant&intron_variant|HIGH|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|8/8|c.2266+1A>G||||||;LOF=(LOC_Os03g26350|LOC_Os03g26350|1|1.00) GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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66 3 15069856 SNP-3.15068502. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|8/8|c.2266+174A>G|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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67 3 15069889 SNP-3.15068535. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|8/8|c.2266+207A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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68 3 15070071 SNP-3.15068717. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|8/8|c.2267-189A>G|||||| GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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69 3 15070205 SNP-3.15068851. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26350|LOC_Os03g26350|transcript|LOC_Os03g26350.1|protein_coding|8/8|c.2267-55A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 ./. 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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70 3 15070559 SNP-3.15069205. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26350-LOC_Os03g26360|LOC_Os03g26350-LOC_Os03g26360|intergenic_region|LOC_Os03g26350-LOC_Os03g26360|||n.15070559A>G|||||| GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 ./. ./. 0/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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71 3 15070657 SNP-3.15069303. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26350-LOC_Os03g26360|LOC_Os03g26350-LOC_Os03g26360|intergenic_region|LOC_Os03g26350-LOC_Os03g26360|||n.15070657A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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72 3 15071721 SNP-3.15070367. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|4/9|c.370A>G|p.Leu124Val|526/1704|370/1548|124/515||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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73 3 15071916 SNP-3.15070562. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|5/9|c.488A>G|p.Thr163Arg|644/1704|488/1548|163/515||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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74 3 15072360 SNP-3.15071006. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|5/8|c.817+115A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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75 3 15072470 SNP-3.15071116. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|5/8|c.817+225A>G|||||| GT 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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76 3 15072855 SNP-3.15071501. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|5/8|c.817+610A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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77 3 15073143 SNP-3.15071789. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|5/8|c.818-652A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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78 3 15073653 SNP-3.15072299. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|5/8|c.818-142A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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79 3 15073924 SNP-3.15072570. A G . . PR;ANN=G|stop_gained|HIGH|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|6/9|c.947A>G|p.Ser316*|1103/1704|947/1548|316/515||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g26360|LOC_Os03g26360|1|1.00);NMD=(LOC_Os03g26360|LOC_Os03g26360|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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80 3 15074046 SNP-3.15072692. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|7/9|c.1018A>G|p.Arg340Gly|1174/1704|1018/1548|340/515||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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81 3 15075268 SNP-3.15073914. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26360|LOC_Os03g26360|transcript|LOC_Os03g26360.1|protein_coding|9/9|c.1528A>G|p.Glu510Glu|1684/1704|1528/1548|510/515||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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82 3 15076823 SNP-3.15075469. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26370-LOC_Os03g26380|LOC_Os03g26370-LOC_Os03g26380|intergenic_region|LOC_Os03g26370-LOC_Os03g26380|||n.15076823A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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83 3 15092922 SNP-3.15091568. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26400-LOC_Os03g26420|LOC_Os03g26400-LOC_Os03g26420|intergenic_region|LOC_Os03g26400-LOC_Os03g26420|||n.15092922A>G|||||| GT ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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84 3 15093289 SNP-3.15091935. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26400-LOC_Os03g26420|LOC_Os03g26400-LOC_Os03g26420|intergenic_region|LOC_Os03g26400-LOC_Os03g26420|||n.15093289A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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85 3 15094063 SNP-3.15092709. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26400-LOC_Os03g26420|LOC_Os03g26400-LOC_Os03g26420|intergenic_region|LOC_Os03g26400-LOC_Os03g26420|||n.15094063A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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86 3 15095753 SNP-3.15094399. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26400-LOC_Os03g26420|LOC_Os03g26400-LOC_Os03g26420|intergenic_region|LOC_Os03g26400-LOC_Os03g26420|||n.15095753A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/0 0/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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87 3 15097742 SNP-3.15096388. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26420|LOC_Os03g26420|transcript|LOC_Os03g26420.1|protein_coding|1/1|c.626A>G|p.Arg209Arg|626/663|626/663|209/220||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/1 ./. 0/1 ./. ./. ./. ./. 1/1 ./. 0/1 ./. ./. 0/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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88 3 15098539 SNP-3.15097185. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26420-LOC_Os03g26430|LOC_Os03g26420-LOC_Os03g26430|intergenic_region|LOC_Os03g26420-LOC_Os03g26430|||n.15098539A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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89 3 15104295 SNP-3.15102941. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26430-LOC_Os03g26440|LOC_Os03g26430-LOC_Os03g26440|intergenic_region|LOC_Os03g26430-LOC_Os03g26440|||n.15104295A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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90 3 15105593 SNP-3.15104239. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26430-LOC_Os03g26440|LOC_Os03g26430-LOC_Os03g26440|intergenic_region|LOC_Os03g26430-LOC_Os03g26440|||n.15105593A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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91 3 15105921 SNP-3.15104567. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26430-LOC_Os03g26440|LOC_Os03g26430-LOC_Os03g26440|intergenic_region|LOC_Os03g26430-LOC_Os03g26440|||n.15105921A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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92 3 15106183 SNP-3.15104829. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26430-LOC_Os03g26440|LOC_Os03g26430-LOC_Os03g26440|intergenic_region|LOC_Os03g26430-LOC_Os03g26440|||n.15106183C>A|||||| GT 0/0 1/1 0/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 ./. ./. 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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93 3 15108121 SNP-3.15106767. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26440|LOC_Os03g26440|transcript|LOC_Os03g26440.1|protein_coding|4/15|c.275A>G|p.Arg92Arg|275/1236|275/1236|92/411||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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94 3 15108954 SNP-3.15107600. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26440|LOC_Os03g26440|transcript|LOC_Os03g26440.1|protein_coding|6/14|c.468+106A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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95 3 15112916 SNP-3.15111562. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g26440|LOC_Os03g26440|transcript|LOC_Os03g26440.1|protein_coding|14/14|c.1157-616C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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96 3 15116227 SNP-3.15114873. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26450|LOC_Os03g26450|transcript|LOC_Os03g26450.1|protein_coding|3/8|c.255C>A|p.Ser85Ser|382/1253|255/759|85/252|| GT 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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97 3 15117473 SNP-3.15116119. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26450|LOC_Os03g26450|transcript|LOC_Os03g26450.1|protein_coding|6/7|c.580-207A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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98 3 15118197 SNP-3.15116843ga. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g26450|LOC_Os03g26450|transcript|LOC_Os03g26450.1|protein_coding|8/8|c.*219C>A|||||219|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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99 3 15118218 SNP-3.15116864. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g26450|LOC_Os03g26450|transcript|LOC_Os03g26450.1|protein_coding|8/8|c.*240C>A|||||240| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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100 3 15120220 SNP-3.15118866. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26460|LOC_Os03g26460|transcript|LOC_Os03g26460.1|protein_coding|3/5|c.614-34T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g26460|LOC_Os03g26460|transcript|LOC_Os03g26460.2|protein_coding|3/4|c.614-34T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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101 3 15122456 SNP-3.15121102. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26470-LOC_Os03g26480|LOC_Os03g26470-LOC_Os03g26480|intergenic_region|LOC_Os03g26470-LOC_Os03g26480|||n.15122456C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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102 3 15123271 SNP-3.15121917. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26470-LOC_Os03g26480|LOC_Os03g26470-LOC_Os03g26480|intergenic_region|LOC_Os03g26470-LOC_Os03g26480|||n.15123271C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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103 3 15123515 SNP-3.15122161. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26470-LOC_Os03g26480|LOC_Os03g26470-LOC_Os03g26480|intergenic_region|LOC_Os03g26470-LOC_Os03g26480|||n.15123515C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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104 3 15124843 SNP-3.15123489. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26480|LOC_Os03g26480|transcript|LOC_Os03g26480.1|protein_coding|1/3|c.423A>G|p.Thr141Thr|423/1290|423/1290|141/429||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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105 3 15126492 SNP-3.15125138. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26480|LOC_Os03g26480|transcript|LOC_Os03g26480.1|protein_coding|3/3|c.724A>G|p.Pro242Ala|724/1290|724/1290|242/429||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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106 3 15131782 SNP-3.15130428. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g26500|LOC_Os03g26500|transcript|LOC_Os03g26500.1|protein_coding|2/2|c.356G>T|p.Asp119Val|356/750|356/750|119/249||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 |
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107 3 15134720 SNP-3.15133366. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26500-LOC_Os03g26510|LOC_Os03g26500-LOC_Os03g26510|intergenic_region|LOC_Os03g26500-LOC_Os03g26510|||n.15134720C>A|||||| GT 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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108 3 15134837 SNP-3.15133483. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26500-LOC_Os03g26510|LOC_Os03g26500-LOC_Os03g26510|intergenic_region|LOC_Os03g26500-LOC_Os03g26510|||n.15134837C>A|||||| GT 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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109 3 15135234 SNP-3.15133880. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26500-LOC_Os03g26510|LOC_Os03g26500-LOC_Os03g26510|intergenic_region|LOC_Os03g26500-LOC_Os03g26510|||n.15135234A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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110 3 15135562 SNP-3.15134208. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26500-LOC_Os03g26510|LOC_Os03g26500-LOC_Os03g26510|intergenic_region|LOC_Os03g26500-LOC_Os03g26510|||n.15135562A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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111 3 15135826 SNP-3.15134472. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26500-LOC_Os03g26510|LOC_Os03g26500-LOC_Os03g26510|intergenic_region|LOC_Os03g26500-LOC_Os03g26510|||n.15135826C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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112 3 15137113 SNP-3.15135759. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26500-LOC_Os03g26510|LOC_Os03g26500-LOC_Os03g26510|intergenic_region|LOC_Os03g26500-LOC_Os03g26510|||n.15137113C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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113 3 15138175 SNP-3.15136821. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26500-LOC_Os03g26510|LOC_Os03g26500-LOC_Os03g26510|intergenic_region|LOC_Os03g26500-LOC_Os03g26510|||n.15138175A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 |
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114 3 15140186 SNP-3.15138832. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26510-LOC_Os03g26520|LOC_Os03g26510-LOC_Os03g26520|intergenic_region|LOC_Os03g26510-LOC_Os03g26520|||n.15140186C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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115 3 15141993 SNP-3.15140639. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26510-LOC_Os03g26520|LOC_Os03g26510-LOC_Os03g26520|intergenic_region|LOC_Os03g26510-LOC_Os03g26520|||n.15141993C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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116 3 15142981 SNP-3.15141627. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26510-LOC_Os03g26520|LOC_Os03g26510-LOC_Os03g26520|intergenic_region|LOC_Os03g26510-LOC_Os03g26520|||n.15142981C>A|||||| GT 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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117 3 15145671 SNP-3.15144317. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26510-LOC_Os03g26520|LOC_Os03g26510-LOC_Os03g26520|intergenic_region|LOC_Os03g26510-LOC_Os03g26520|||n.15145671A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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118 3 15146229 SNP-3.15144875. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26510-LOC_Os03g26520|LOC_Os03g26510-LOC_Os03g26520|intergenic_region|LOC_Os03g26510-LOC_Os03g26520|||n.15146229A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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119 3 15146763 SNP-3.15145409. C A . . PR;ANN=A|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g26520|LOC_Os03g26520|transcript|LOC_Os03g26520.1|protein_coding|1/1|c.491-2G>T||||||;LOF=(LOC_Os03g26520|LOC_Os03g26520|1|1.00) GT 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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120 3 15146784 SNP-3.15145430. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26520|LOC_Os03g26520|transcript|LOC_Os03g26520.1|protein_coding|1/1|c.491-23T>C|||||| GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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121 3 15147681 SNP-3.15146327. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26520-LOC_Os03g26530|LOC_Os03g26520-LOC_Os03g26530|intergenic_region|LOC_Os03g26520-LOC_Os03g26530|||n.15147681C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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122 3 15151367 SNP-3.15150013. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26530|LOC_Os03g26530|transcript|LOC_Os03g26530.1|protein_coding|1/1|c.1361C>A|p.Tyr454Tyr|1429/2013|1361/1404|454/467||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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123 3 15151714 SNP-3.15150360. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g26530|LOC_Os03g26530|transcript|LOC_Os03g26530.1|protein_coding|1/1|c.*304A>G|||||304|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 ./. 0/1 0/1 ./. ./. 0/1 0/0 1/1 ./. ./. ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. |
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124 3 15154622 SNP-3.15153268. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26530-LOC_Os03g26540|LOC_Os03g26530-LOC_Os03g26540|intergenic_region|LOC_Os03g26530-LOC_Os03g26540|||n.15154622A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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125 3 15155173 SNP-3.15153819. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26530-LOC_Os03g26540|LOC_Os03g26530-LOC_Os03g26540|intergenic_region|LOC_Os03g26530-LOC_Os03g26540|||n.15155173A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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126 3 15155827 SNP-3.15154473. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26530-LOC_Os03g26540|LOC_Os03g26530-LOC_Os03g26540|intergenic_region|LOC_Os03g26530-LOC_Os03g26540|||n.15155827A>G|||||| GT ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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127 3 15155951 SNP-3.15154597. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26530-LOC_Os03g26540|LOC_Os03g26530-LOC_Os03g26540|intergenic_region|LOC_Os03g26530-LOC_Os03g26540|||n.15155951A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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128 3 15158042 SNP-3.15156688. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26540-LOC_Os03g26550|LOC_Os03g26540-LOC_Os03g26550|intergenic_region|LOC_Os03g26540-LOC_Os03g26550|||n.15158042C>A|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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129 3 15163259 SNP-3.15161905. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26540-LOC_Os03g26550|LOC_Os03g26540-LOC_Os03g26550|intergenic_region|LOC_Os03g26540-LOC_Os03g26550|||n.15163259A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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130 3 15163904 SNP-3.15162550. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26540-LOC_Os03g26550|LOC_Os03g26540-LOC_Os03g26550|intergenic_region|LOC_Os03g26540-LOC_Os03g26550|||n.15163904A>G|||||| GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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131 3 15164146 SNP-3.15162792. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26540-LOC_Os03g26550|LOC_Os03g26540-LOC_Os03g26550|intergenic_region|LOC_Os03g26540-LOC_Os03g26550|||n.15164146A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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132 3 15164772 SNP-3.15163418. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26540-LOC_Os03g26550|LOC_Os03g26540-LOC_Os03g26550|intergenic_region|LOC_Os03g26540-LOC_Os03g26550|||n.15164772A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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133 3 15165486 SNP-3.15164132. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26550|LOC_Os03g26550|transcript|LOC_Os03g26550.1|protein_coding|1/3|c.26A>G|p.Val9Gly|26/228|26/228|9/75||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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134 3 15165606 SNP-3.15164252. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26550|LOC_Os03g26550|transcript|LOC_Os03g26550.1|protein_coding|1/3|c.146A>G|p.Met49Arg|146/228|146/228|49/75||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 ./. ./. ./. 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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135 3 15165621 SNP-3.15164267. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26550|LOC_Os03g26550|transcript|LOC_Os03g26550.1|protein_coding|1/3|c.161A>G|p.Asp54Gly|161/228|161/228|54/75|| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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136 3 15165706 SNP-3.15164352. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26550|LOC_Os03g26550|transcript|LOC_Os03g26550.1|protein_coding|1/2|c.170-19A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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137 3 15177294 SNP-3.15175940. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26560-LOC_Os03g26570|LOC_Os03g26560-LOC_Os03g26570|intergenic_region|LOC_Os03g26560-LOC_Os03g26570|||n.15177294A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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138 3 15177335 SNP-3.15175981. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26560-LOC_Os03g26570|LOC_Os03g26560-LOC_Os03g26570|intergenic_region|LOC_Os03g26560-LOC_Os03g26570|||n.15177335A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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139 3 15178305 SNP-3.15176951. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26560-LOC_Os03g26570|LOC_Os03g26560-LOC_Os03g26570|intergenic_region|LOC_Os03g26560-LOC_Os03g26570|||n.15178305C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
diff
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140 3 15178849 SNP-3.15177495. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26560-LOC_Os03g26570|LOC_Os03g26560-LOC_Os03g26570|intergenic_region|LOC_Os03g26560-LOC_Os03g26570|||n.15178849A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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141 3 15178882 SNP-3.15177528. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g26570|LOC_Os03g26570|transcript|LOC_Os03g26570.1|protein_coding|1/6|c.11C>A|p.Leu4His|11/3285|11/3285|4/1094||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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142 3 15180161 SNP-3.15178807. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g26570|LOC_Os03g26570|transcript|LOC_Os03g26570.1|protein_coding|3/6|c.835C>A|p.Phe279Ile|835/3285|835/3285|279/1094||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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143 3 15180305 SNP-3.15178951. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26570|LOC_Os03g26570|transcript|LOC_Os03g26570.1|protein_coding|3/6|c.979A>G|p.Gln327Glu|979/3285|979/3285|327/1094||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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144 3 15180782 SNP-3.15179428. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26570|LOC_Os03g26570|transcript|LOC_Os03g26570.1|protein_coding|3/6|c.1456C>A|p.Ser486Ser|1456/3285|1456/3285|486/1094||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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145 3 15181560 SNP-3.15180206. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26570|LOC_Os03g26570|transcript|LOC_Os03g26570.1|protein_coding|4/6|c.2072A>G|p.Thr691Ser|2072/3285|2072/3285|691/1094||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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146 3 15181674 SNP-3.15180320. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26570|LOC_Os03g26570|transcript|LOC_Os03g26570.1|protein_coding|4/6|c.2186C>A|p.Asp729Asp|2186/3285|2186/3285|729/1094||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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147 3 15182020 SNP-3.15180666. C A . . PR;ANN=A|missense_variant&splice_region_variant|MODERATE|LOC_Os03g26570|LOC_Os03g26570|transcript|LOC_Os03g26570.1|protein_coding|5/6|c.2427C>A|p.Asn809Lys|2427/3285|2427/3285|809/1094||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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148 3 15182293 SNP-3.15180939. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g26570|LOC_Os03g26570|transcript|LOC_Os03g26570.1|protein_coding|5/6|c.2700C>A|p.Tyr900*|2700/3285|2700/3285|900/1094||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g26570|LOC_Os03g26570|1|1.00);NMD=(LOC_Os03g26570|LOC_Os03g26570|1|1.00) GT ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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149 3 15183245 SNP-3.15181891. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15183245A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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150 3 15183327 SNP-3.15181973. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15183327A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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151 3 15183542 SNP-3.15182188. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15183542A>G|||||| GT 1/1 ./. ./. ./. ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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152 3 15185690 SNP-3.15184336. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15185690A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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153 3 15185780 SNP-3.15184426. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15185780A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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154 3 15186485 SNP-3.15185131. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15186485A>G|||||| GT ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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155 3 15186576 SNP-3.15185222. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15186576A>G|||||| GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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156 3 15187562 SNP-3.15186208. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15187562A>G|||||| GT ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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157 3 15187944 SNP-3.15186590. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15187944A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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158 3 15188301 SNP-3.15186947. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26570-LOC_Os03g26590|LOC_Os03g26570-LOC_Os03g26590|intergenic_region|LOC_Os03g26570-LOC_Os03g26590|||n.15188301A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/1 0/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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159 3 15189650 SNP-3.15188296. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26590|LOC_Os03g26590|transcript|LOC_Os03g26590.1|protein_coding|1/2|c.-164-104A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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160 3 15189903 SNP-3.15188549. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26590|LOC_Os03g26590|transcript|LOC_Os03g26590.1|protein_coding|2/2|c.-94+79A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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161 3 15190247 SNP-3.15188893. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g26590|LOC_Os03g26590|transcript|LOC_Os03g26590.1|protein_coding|2/2|c.-94+423C>A|||||| GT 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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162 3 15194289 SNP-3.15192935. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26590|LOC_Os03g26590|transcript|LOC_Os03g26590.1|protein_coding|2/2|c.-93-62A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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163 3 15194367 SNP-3.15193013. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g26590|LOC_Os03g26590|transcript|LOC_Os03g26590.1|protein_coding|3/3|c.-77A>G|||||77|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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164 3 15199663 SNP-3.15198309. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26590-LOC_Os03g26610|LOC_Os03g26590-LOC_Os03g26610|intergenic_region|LOC_Os03g26590-LOC_Os03g26610|||n.15199663A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/1 ./. ./. 0/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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165 3 15199752 SNP-3.15198398. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26590-LOC_Os03g26610|LOC_Os03g26590-LOC_Os03g26610|intergenic_region|LOC_Os03g26590-LOC_Os03g26610|||n.15199752A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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166 3 15199829 SNP-3.15198475. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26590-LOC_Os03g26610|LOC_Os03g26590-LOC_Os03g26610|intergenic_region|LOC_Os03g26590-LOC_Os03g26610|||n.15199829A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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167 3 15201959 SNP-3.15200605. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26590-LOC_Os03g26610|LOC_Os03g26590-LOC_Os03g26610|intergenic_region|LOC_Os03g26590-LOC_Os03g26610|||n.15201959A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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168 3 15202420 SNP-3.15201066. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26590-LOC_Os03g26610|LOC_Os03g26590-LOC_Os03g26610|intergenic_region|LOC_Os03g26590-LOC_Os03g26610|||n.15202420A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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169 3 15206365 SNP-3.15205011. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26610|LOC_Os03g26610|transcript|LOC_Os03g26610.1|protein_coding|5/6|c.986A>G|p.Lys329Arg|986/1494|986/1494|329/497|| GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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170 3 15208339 SNP-3.15206985. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26610-LOC_Os03g26620|LOC_Os03g26610-LOC_Os03g26620|intergenic_region|LOC_Os03g26610-LOC_Os03g26620|||n.15208339C>A|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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171 3 15208375 SNP-3.15207021. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26610-LOC_Os03g26620|LOC_Os03g26610-LOC_Os03g26620|intergenic_region|LOC_Os03g26610-LOC_Os03g26620|||n.15208375A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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172 3 15208508 SNP-3.15207154. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26610-LOC_Os03g26620|LOC_Os03g26610-LOC_Os03g26620|intergenic_region|LOC_Os03g26610-LOC_Os03g26620|||n.15208508A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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173 3 15210667 SNP-3.15209313. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g26620|LOC_Os03g26620|transcript|LOC_Os03g26620.1|protein_coding|1/1|c.*356C>A|||||356|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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174 3 15210787 SNP-3.15209433. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26620-LOC_Os03g26630|LOC_Os03g26620-LOC_Os03g26630|intergenic_region|LOC_Os03g26620-LOC_Os03g26630|||n.15210787A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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175 3 15212642 SNP-3.15211288. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26620-LOC_Os03g26630|LOC_Os03g26620-LOC_Os03g26630|intergenic_region|LOC_Os03g26620-LOC_Os03g26630|||n.15212642C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. ./. 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. ./. ./. ./. 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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176 3 15212918 SNP-3.15211564. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26620-LOC_Os03g26630|LOC_Os03g26620-LOC_Os03g26630|intergenic_region|LOC_Os03g26620-LOC_Os03g26630|||n.15212918A>G|||||| GT 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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177 3 15214904 SNP-3.15213550. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26630|LOC_Os03g26630|transcript|LOC_Os03g26630.1|protein_coding|6/7|c.1909T>C|p.Ala637Pro|2319/2928|1909/2148|637/715||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g26630|LOC_Os03g26630|transcript|LOC_Os03g26630.2|protein_coding|6/6|c.1909T>C|p.Ala637Pro|2319/3026|1909/2148|637/715||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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178 3 15215501 SNP-3.15214147. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26630|LOC_Os03g26630|transcript|LOC_Os03g26630.1|protein_coding|5/6|c.1683+94T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g26630|LOC_Os03g26630|transcript|LOC_Os03g26630.2|protein_coding|5/5|c.1683+94T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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179 3 15215914 SNP-3.15214560. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g26630|LOC_Os03g26630|transcript|LOC_Os03g26630.1|protein_coding|4/7|c.1454G>T|p.Asn485Ile|1864/2928|1454/2148|485/715||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g26630|LOC_Os03g26630|transcript|LOC_Os03g26630.2|protein_coding|4/6|c.1454G>T|p.Asn485Ile|1864/3026|1454/2148|485/715||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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180 3 15216651 SNP-3.15215297. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g26630|LOC_Os03g26630|transcript|LOC_Os03g26630.1|protein_coding|3/6|c.1333+184G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g26630|LOC_Os03g26630|transcript|LOC_Os03g26630.2|protein_coding|3/5|c.1333+184G>T|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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181 3 15219769 SNP-3.15218415. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26630-LOC_Os03g26650|LOC_Os03g26630-LOC_Os03g26650|intergenic_region|LOC_Os03g26630-LOC_Os03g26650|||n.15219769C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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182 3 15222669 SNP-3.15221315. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26630-LOC_Os03g26650|LOC_Os03g26630-LOC_Os03g26650|intergenic_region|LOC_Os03g26630-LOC_Os03g26650|||n.15222669A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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183 3 15222691 SNP-3.15221337. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26630-LOC_Os03g26650|LOC_Os03g26630-LOC_Os03g26650|intergenic_region|LOC_Os03g26630-LOC_Os03g26650|||n.15222691C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/1 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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184 3 15223329 SNP-3.15221975. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26630-LOC_Os03g26650|LOC_Os03g26630-LOC_Os03g26650|intergenic_region|LOC_Os03g26630-LOC_Os03g26650|||n.15223329A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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185 3 15224013 SNP-3.15222659. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26630-LOC_Os03g26650|LOC_Os03g26630-LOC_Os03g26650|intergenic_region|LOC_Os03g26630-LOC_Os03g26650|||n.15224013A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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186 3 15224158 SNP-3.15222804. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g26650|LOC_Os03g26650|transcript|LOC_Os03g26650.2|protein_coding|1/2|c.-505A>G|||||505|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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187 3 15224552 SNP-3.15223198. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g26650|LOC_Os03g26650|transcript|LOC_Os03g26650.2|protein_coding|1/2|c.-111C>A|||||111|WARNING_REF_DOES_NOT_MATCH_GENOME,A|intron_variant|MODIFIER|LOC_Os03g26650|LOC_Os03g26650|transcript|LOC_Os03g26650.1|protein_coding|1/2|c.-54-57C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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188 3 15224739 SNP-3.15223385. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26650|LOC_Os03g26650|transcript|LOC_Os03g26650.1|protein_coding|2/3|c.77A>G|p.Arg26Arg|226/953|77/474|26/157||WARNING_REF_DOES_NOT_MATCH_GENOME,G|synonymous_variant|LOW|LOC_Os03g26650|LOC_Os03g26650|transcript|LOC_Os03g26650.2|protein_coding|1/2|c.77A>G|p.Arg26Arg|723/1450|77/474|26/157||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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189 3 15225273 SNP-3.15223919. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26650|LOC_Os03g26650|transcript|LOC_Os03g26650.1|protein_coding|3/3|c.466A>G|p.Leu156Val|615/953|466/474|156/157||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g26650|LOC_Os03g26650|transcript|LOC_Os03g26650.2|protein_coding|2/2|c.466A>G|p.Leu156Val|1112/1450|466/474|156/157||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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190 3 15225820 SNP-3.15224466. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26650-LOC_Os03g26660|LOC_Os03g26650-LOC_Os03g26660|intergenic_region|LOC_Os03g26650-LOC_Os03g26660|||n.15225820A>G|||||| GT ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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191 3 15226647 SNP-3.15225293. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26650-LOC_Os03g26660|LOC_Os03g26650-LOC_Os03g26660|intergenic_region|LOC_Os03g26650-LOC_Os03g26660|||n.15226647A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. |
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192 3 15233433 SNP-3.15232079. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26670-LOC_Os03g26680|LOC_Os03g26670-LOC_Os03g26680|intergenic_region|LOC_Os03g26670-LOC_Os03g26680|||n.15233433C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 |
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193 3 15233559 SNP-3.15232205. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26670-LOC_Os03g26680|LOC_Os03g26670-LOC_Os03g26680|intergenic_region|LOC_Os03g26670-LOC_Os03g26680|||n.15233559A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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194 3 15234063 SNP-3.15232709. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26670-LOC_Os03g26680|LOC_Os03g26670-LOC_Os03g26680|intergenic_region|LOC_Os03g26670-LOC_Os03g26680|||n.15234063C>A|||||| GT 0/1 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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195 3 15235833 SNP-3.15234479. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26680|LOC_Os03g26680|transcript|LOC_Os03g26680.1|protein_coding|1/2|c.238T>C|p.Leu80Leu|238/477|238/477|80/158||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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196 3 15239794 SNP-3.15238440. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26690|LOC_Os03g26690|transcript|LOC_Os03g26690.1|protein_coding|2/8|c.957-297A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 |
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197 3 15241687 SNP-3.15240333. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26690|LOC_Os03g26690|transcript|LOC_Os03g26690.1|protein_coding|5/9|c.1608C>A|p.Lys536Lys|1608/2454|1608/2454|536/817||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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198 3 15254129 SNP-3.15252775. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26720-LOC_Os03g26730|LOC_Os03g26720-LOC_Os03g26730|intergenic_region|LOC_Os03g26720-LOC_Os03g26730|||n.15254129C>A|||||| GT 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 |
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199 3 15254265 SNP-3.15252911. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26720-LOC_Os03g26730|LOC_Os03g26720-LOC_Os03g26730|intergenic_region|LOC_Os03g26720-LOC_Os03g26730|||n.15254265C>A|||||| GT ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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200 3 15290587 SNP-3.15289233. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26770-LOC_Os03g26784|LOC_Os03g26770-LOC_Os03g26784|intergenic_region|LOC_Os03g26770-LOC_Os03g26784|||n.15290587A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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201 3 15290918 SNP-3.15289564. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26770-LOC_Os03g26784|LOC_Os03g26770-LOC_Os03g26784|intergenic_region|LOC_Os03g26770-LOC_Os03g26784|||n.15290918C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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202 3 15291376 SNP-3.15290022. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26784|LOC_Os03g26784|transcript|LOC_Os03g26784.1|protein_coding|5/5|c.1251T>C|p.Lys417Asn|1251/1266|1251/1266|417/421||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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203 3 15292524 SNP-3.15291170. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26784|LOC_Os03g26784|transcript|LOC_Os03g26784.1|protein_coding|2/5|c.353T>C|p.Asp118Ala|353/1266|353/1266|118/421||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/1 1/1 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 0/0 1/1 1/1 0/1 0/0 0/1 1/1 0/0 ./. 0/1 0/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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204 3 15292560 SNP-3.15291206. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26784|LOC_Os03g26784|transcript|LOC_Os03g26784.1|protein_coding|2/5|c.317T>C|p.Arg106Pro|317/1266|317/1266|106/421||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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205 3 15292626 SNP-3.15291272. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26784|LOC_Os03g26784|transcript|LOC_Os03g26784.1|protein_coding|2/5|c.251T>C|p.Gln84Pro|251/1266|251/1266|84/421||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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206 3 15293334 SNP-3.15291980. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26784|LOC_Os03g26784|transcript|LOC_Os03g26784.1|protein_coding|1/4|c.143-600T>C|||||| GT 1/1 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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207 3 15293985 SNP-3.15292631. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26784|LOC_Os03g26784|transcript|LOC_Os03g26784.1|protein_coding|1/4|c.142+129T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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208 3 15294598 SNP-3.15293244. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26784-LOC_Os03g26791|LOC_Os03g26784-LOC_Os03g26791|intergenic_region|LOC_Os03g26784-LOC_Os03g26791|||n.15294598A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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209 3 15294874 SNP-3.15293520. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26784-LOC_Os03g26791|LOC_Os03g26784-LOC_Os03g26791|intergenic_region|LOC_Os03g26784-LOC_Os03g26791|||n.15294874A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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210 3 15301525 SNP-3.15300171. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26800-LOC_Os03g26810|LOC_Os03g26800-LOC_Os03g26810|intergenic_region|LOC_Os03g26800-LOC_Os03g26810|||n.15301525C>A|||||| GT 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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211 3 15304027 SNP-3.15302673. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26810|LOC_Os03g26810|transcript|LOC_Os03g26810.1|protein_coding|2/4|c.202A>G|p.Lys68Glu|202/708|202/708|68/235|| GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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212 3 15309510 SNP-3.15308156. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26820|LOC_Os03g26820|transcript|LOC_Os03g26820.1|protein_coding|2/2|c.526A>G|p.Phe176Val|607/912|526/537|176/178||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/1 0/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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213 3 15309552 SNP-3.15308198. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g26820|LOC_Os03g26820|transcript|LOC_Os03g26820.1|protein_coding|2/2|c.*31A>G|||||31|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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214 3 15315887 SNP-3.15314533. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26830-LOC_Os03g26840|LOC_Os03g26830-LOC_Os03g26840|intergenic_region|LOC_Os03g26830-LOC_Os03g26840|||n.15315887C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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215 3 15316277 SNP-3.15314923. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26840|LOC_Os03g26840|transcript|LOC_Os03g26840.1|protein_coding|1/1|c.257G>T|p.Leu86Leu|257/564|257/564|86/187||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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216 3 15316494 SNP-3.15315140. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26840|LOC_Os03g26840|transcript|LOC_Os03g26840.1|protein_coding|1/1|c.40T>C|p.Leu14Leu|40/564|40/564|14/187||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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217 3 15318459 SNP-3.15317105. A G . . PR;ANN=G|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g26850|LOC_Os03g26850|transcript|LOC_Os03g26850.1|protein_coding|1/2|c.151-1A>G||||||;LOF=(LOC_Os03g26850|LOC_Os03g26850|1|1.00) GT 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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218 3 15319991 SNP-3.15318637. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26850-LOC_Os03g26860|LOC_Os03g26850-LOC_Os03g26860|intergenic_region|LOC_Os03g26850-LOC_Os03g26860|||n.15319991A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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219 3 15320714 SNP-3.15319360. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26850-LOC_Os03g26860|LOC_Os03g26850-LOC_Os03g26860|intergenic_region|LOC_Os03g26850-LOC_Os03g26860|||n.15320714A>G|||||| GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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220 3 15321314 SNP-3.15319960. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26850-LOC_Os03g26860|LOC_Os03g26850-LOC_Os03g26860|intergenic_region|LOC_Os03g26850-LOC_Os03g26860|||n.15321314A>G|||||| GT 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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221 3 15321781 SNP-3.15320427. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26850-LOC_Os03g26860|LOC_Os03g26850-LOC_Os03g26860|intergenic_region|LOC_Os03g26850-LOC_Os03g26860|||n.15321781A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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222 3 15323105 SNP-3.15321751. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26860|LOC_Os03g26860|transcript|LOC_Os03g26860.1|protein_coding|2/3|c.459G>T|p.Leu153Leu|507/1657|459/999|153/332||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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223 3 15323126 SNP-3.15321772. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g26860|LOC_Os03g26860|transcript|LOC_Os03g26860.1|protein_coding|2/3|c.438G>T|p.Gln146His|486/1657|438/999|146/332||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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224 3 15323380 SNP-3.15322026. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26860|LOC_Os03g26860|transcript|LOC_Os03g26860.1|protein_coding|1/2|c.367-183T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/1 0/1 1/1 1/1 ./. 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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225 3 15326858 SNP-3.15325504. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26860-LOC_Os03g26870|LOC_Os03g26860-LOC_Os03g26870|intergenic_region|LOC_Os03g26860-LOC_Os03g26870|||n.15326858A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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226 3 15326925 SNP-3.15325571. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26860-LOC_Os03g26870|LOC_Os03g26860-LOC_Os03g26870|intergenic_region|LOC_Os03g26860-LOC_Os03g26870|||n.15326925C>A|||||| GT 0/0 1/1 ./. 0/1 0/1 ./. 1/1 0/1 0/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 0/1 0/1 0/0 0/1 ./. 0/1 ./. 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/1 1/1 0/0 0/1 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 ./. 0/1 0/0 0/1 1/1 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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227 3 15327621 SNP-3.15326267. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26860-LOC_Os03g26870|LOC_Os03g26860-LOC_Os03g26870|intergenic_region|LOC_Os03g26860-LOC_Os03g26870|||n.15327621C>A|||||| GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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228 3 15327657 SNP-3.15326303. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26860-LOC_Os03g26870|LOC_Os03g26860-LOC_Os03g26870|intergenic_region|LOC_Os03g26860-LOC_Os03g26870|||n.15327657A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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229 3 15327752 SNP-3.15326398. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26860-LOC_Os03g26870|LOC_Os03g26860-LOC_Os03g26870|intergenic_region|LOC_Os03g26860-LOC_Os03g26870|||n.15327752C>A|||||| GT 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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230 3 15328210 SNP-3.15326856. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26860-LOC_Os03g26870|LOC_Os03g26860-LOC_Os03g26870|intergenic_region|LOC_Os03g26860-LOC_Os03g26870|||n.15328210A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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231 3 15329206 SNP-3.15327852. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26860-LOC_Os03g26870|LOC_Os03g26860-LOC_Os03g26870|intergenic_region|LOC_Os03g26860-LOC_Os03g26870|||n.15329206A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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232 3 15329912 SNP-3.15328558. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.1|protein_coding|1/9|c.-116-20A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.2|protein_coding|1/8|c.-1641-20A>G|||||| GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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233 3 15331834 SNP-3.15330480. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.2|protein_coding|4/9|c.-1077A>G|||||1077|WARNING_REF_DOES_NOT_MATCH_GENOME,G|intron_variant|MODIFIER|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.1|protein_coding|4/9|c.252+197A>G|||||| GT ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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234 3 15332489 SNP-3.15331135. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.2|protein_coding|4/9|c.-422C>A|||||422|WARNING_REF_DOES_NOT_MATCH_GENOME,A|intron_variant|MODIFIER|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.1|protein_coding|4/9|c.253-452C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/1 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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235 3 15333239 SNP-3.15331885. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.1|protein_coding|6/10|c.462A>G|p.Ala154Ala|771/2055|462/1209|154/402||WARNING_REF_DOES_NOT_MATCH_GENOME,G|synonymous_variant|LOW|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.2|protein_coding|5/9|c.240A>G|p.Ala80Ala|2074/3358|240/987|80/328||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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236 3 15333774 SNP-3.15332420. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.1|protein_coding|9/10|c.720A>G|p.Leu240Leu|1029/2055|720/1209|240/402||WARNING_REF_DOES_NOT_MATCH_GENOME,G|synonymous_variant|LOW|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.2|protein_coding|8/9|c.498A>G|p.Leu166Leu|2332/3358|498/987|166/328||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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237 3 15333798 SNP-3.15332444. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.1|protein_coding|9/10|c.744C>A|p.Ser248Ser|1053/2055|744/1209|248/402||,A|synonymous_variant|LOW|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.2|protein_coding|8/9|c.522C>A|p.Ser174Ser|2356/3358|522/987|174/328|| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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238 3 15333950 SNP-3.15332596. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.1|protein_coding|10/10|c.793A>G|p.Lys265Glu|1102/2055|793/1209|265/402||,G|missense_variant|MODERATE|LOC_Os03g26870|LOC_Os03g26870|transcript|LOC_Os03g26870.2|protein_coding|9/9|c.571A>G|p.Lys191Glu|2405/3358|571/987|191/328|| GT ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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239 3 15335806 SNP-3.15334452. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15335806A>G|||||| GT ./. ./. ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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240 3 15335891 SNP-3.15334537. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15335891C>A|||||| GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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241 3 15336159 SNP-3.15334805. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15336159A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 |
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242 3 15336618 SNP-3.15335264. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15336618A>G|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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243 3 15336996 SNP-3.15335642. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15336996A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/1 ./. 0/1 0/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 |
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244 3 15337287 SNP-3.15335933. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15337287A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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245 3 15340437 SNP-3.15339083. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15340437A>G|||||| GT ./. ./. 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. ./. ./. 0/1 0/1 0/0 0/0 0/1 0/1 1/1 ./. 0/1 0/1 ./. 0/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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246 3 15341253 SNP-3.15339899. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15341253A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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247 3 15341900 SNP-3.15340546. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15341900A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 |
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248 3 15343206 SNP-3.15341852. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15343206A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 |
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249 3 15346607 SNP-3.15345253. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15346607C>A|||||| GT 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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250 3 15347942 SNP-3.15346588. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26870-LOC_Os03g26880|LOC_Os03g26870-LOC_Os03g26880|intergenic_region|LOC_Os03g26870-LOC_Os03g26880|||n.15347942A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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251 3 15348159 SNP-3.15346805. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26880|LOC_Os03g26880|transcript|LOC_Os03g26880.1|protein_coding|1/6|c.52-40A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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252 3 15349886 SNP-3.15348532. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g26880|LOC_Os03g26880|transcript|LOC_Os03g26880.1|protein_coding|4/7|c.1335C>A|p.His445Gln|1335/2403|1335/2403|445/800|| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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253 3 15351072 SNP-3.15349718. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26880|LOC_Os03g26880|transcript|LOC_Os03g26880.1|protein_coding|7/7|c.2271C>A|p.Ser757Ser|2271/2403|2271/2403|757/800||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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254 3 15352213 SNP-3.15350859. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26890|LOC_Os03g26890|transcript|LOC_Os03g26890.1|protein_coding|8/8|c.3570T>C|p.Leu1190Phe|3570/4119|3570/4119|1190/1372||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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255 3 15353046 SNP-3.15351692. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g26890|LOC_Os03g26890|transcript|LOC_Os03g26890.1|protein_coding|5/7|c.2885-52G>T|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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256 3 15355248 SNP-3.15353894. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26890|LOC_Os03g26890|transcript|LOC_Os03g26890.1|protein_coding|2/8|c.1523T>C|p.Thr508Thr|1523/4119|1523/4119|508/1372||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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257 3 15355846 SNP-3.15354492. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26890|LOC_Os03g26890|transcript|LOC_Os03g26890.1|protein_coding|1/8|c.1018T>C|p.Arg340Arg|1018/4119|1018/4119|340/1372||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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258 3 15357818 SNP-3.15356464. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g26900|LOC_Os03g26900|transcript|LOC_Os03g26900.1|protein_coding|2/2|c.458-173G>T|||||| GT 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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259 3 15358532 SNP-3.15357178. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26900|LOC_Os03g26900|transcript|LOC_Os03g26900.1|protein_coding|1/3|c.66T>C|p.Gln22His|66/966|66/966|22/321||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/1 ./. ./. 1/1 1/1 ./. ./. ./. 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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260 3 15361028 SNP-3.15359674. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15361028A>G|||||| GT 0/0 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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261 3 15361971 SNP-3.15360617. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15361971C>A|||||| GT 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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262 3 15363498 SNP-3.15362144. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15363498C>A|||||| GT 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/1 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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263 3 15366115 SNP-3.15364761. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15366115C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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264 3 15366187 SNP-3.15364833. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15366187A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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265 3 15367078 SNP-3.15365724. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15367078C>A|||||| GT 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. ./. ./. ./. ./. 0/1 0/1 ./. 0/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 0/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 ./. ./. 0/1 1/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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266 3 15368555 SNP-3.15367201. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15368555C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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267 3 15369388 SNP-3.15368034. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15369388A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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268 3 15369587 SNP-3.15368233. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15369587C>A|||||| GT ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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269 3 15369786 SNP-3.15368432. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15369786A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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270 3 15370592 SNP-3.15369238. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15370592A>G|||||| GT ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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271 3 15370686 SNP-3.15369332. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15370686A>G|||||| GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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272 3 15370768 SNP-3.15369414. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15370768A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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273 3 15371351 SNP-3.15369997. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15371351A>G|||||| GT 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 ./. ./. 0/1 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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274 3 15372006 SNP-3.15370652. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15372006C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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275 3 15373779 SNP-3.15372425. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15373779A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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276 3 15377035 SNP-3.15375681. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15377035A>G|||||| GT 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/1 ./. 0/1 ./. 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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277 3 15378020 SNP-3.15376666. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15378020C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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278 3 15379589 SNP-3.15378235. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15379589C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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279 3 15379816 SNP-3.15378462. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15379816C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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280 3 15379991 SNP-3.15378637. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26900-LOC_Os03g26910|LOC_Os03g26900-LOC_Os03g26910|intergenic_region|LOC_Os03g26900-LOC_Os03g26910|||n.15379991A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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281 3 15382697 SNP-3.15381343. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g26910|LOC_Os03g26910|transcript|LOC_Os03g26910.1|protein_coding|3/5|c.444C>A|p.Pro148Pro|576/1698|444/1125|148/374||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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282 3 15384795 SNP-3.15383441. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15384795C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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283 3 15386720 SNP-3.15385366. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15386720C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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284 3 15387032 SNP-3.15385678. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15387032C>A|||||| GT ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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285 3 15388007 SNP-3.15386653. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15388007C>A|||||| GT 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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286 3 15388697 SNP-3.15387343. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15388697A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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287 3 15389271 SNP-3.15387917. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15389271A>G|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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288 3 15389524 SNP-3.15388170. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15389524A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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289 3 15389626 SNP-3.15388272. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15389626A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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290 3 15390114 SNP-3.15388760. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15390114C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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291 3 15393029 SNP-3.15391675. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26910-LOC_Os03g26920|LOC_Os03g26910-LOC_Os03g26920|intergenic_region|LOC_Os03g26910-LOC_Os03g26920|||n.15393029A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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292 3 15395475 SNP-3.15394121. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26920|LOC_Os03g26920|transcript|LOC_Os03g26920.1|protein_coding|1/8|c.149A>G|p.Arg50Arg|149/1512|149/1512|50/503||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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293 3 15399098 SNP-3.15397744. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26920-LOC_Os03g26930|LOC_Os03g26920-LOC_Os03g26930|intergenic_region|LOC_Os03g26920-LOC_Os03g26930|||n.15399098A>G|||||| GT 1/1 0/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 ./. 0/1 ./. ./. 1/1 0/1 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/1 0/1 ./. ./. 0/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/1 ./. 0/1 1/1 1/1 0/0 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/1 ./. 0/0 1/1 0/1 0/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/1 1/1 ./. 0/1 0/1 1/1 ./. 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 ./. 0/1 0/0 ./. 0/1 ./. 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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294 3 15401934 SNP-3.15400580. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26930|LOC_Os03g26930|transcript|LOC_Os03g26930.1|protein_coding|4/8|c.869A>G|p.Ala290Gly|869/1820|869/1437|290/478||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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295 3 15402454 SNP-3.15401100. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g26930|LOC_Os03g26930|transcript|LOC_Os03g26930.1|protein_coding|5/7|c.1094+201C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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296 3 15402840 SNP-3.15401486. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g26930|LOC_Os03g26930|transcript|LOC_Os03g26930.1|protein_coding|6/8|c.1128A>G|p.Pro376Pro|1128/1820|1128/1437|376/478|| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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297 3 15407650 SNP-3.15406296. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26940|LOC_Os03g26940|transcript|LOC_Os03g26940.1|protein_coding|2/4|c.248-77A>G|||||| GT 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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298 3 15407820 SNP-3.15406466. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26940|LOC_Os03g26940|transcript|LOC_Os03g26940.1|protein_coding|3/4|c.298+43A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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299 3 15410098 SNP-3.15408744. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26940-LOC_Os03g26960|LOC_Os03g26940-LOC_Os03g26960|intergenic_region|LOC_Os03g26940-LOC_Os03g26960|||n.15410098A>G|||||| GT 1/1 ./. 0/1 0/1 0/1 0/0 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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300 3 15417237 SNP-3.15415883. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26960|LOC_Os03g26960|transcript|LOC_Os03g26960.1|protein_coding|13/15|c.3161A>G|p.Asp1054Gly|3161/5328|3161/4746|1054/1581|| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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301 3 15420573 SNP-3.15419219. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g26970|LOC_Os03g26970|transcript|LOC_Os03g26970.1|protein_coding|2/10|c.118+84A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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302 3 15423622 SNP-3.15422268. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g26970|LOC_Os03g26970|transcript|LOC_Os03g26970.1|protein_coding|9/11|c.543A>G|p.Asp181Glu|677/1298|543/708|181/235||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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303 3 15426783 SNP-3.15425429. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26970-LOC_Os03g26980|LOC_Os03g26970-LOC_Os03g26980|intergenic_region|LOC_Os03g26970-LOC_Os03g26980|||n.15426783A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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304 3 15428351 SNP-3.15426997. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26970-LOC_Os03g26980|LOC_Os03g26970-LOC_Os03g26980|intergenic_region|LOC_Os03g26970-LOC_Os03g26980|||n.15428351C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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305 3 15429024 SNP-3.15427670. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26970-LOC_Os03g26980|LOC_Os03g26970-LOC_Os03g26980|intergenic_region|LOC_Os03g26970-LOC_Os03g26980|||n.15429024C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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306 3 15431066 SNP-3.15429712. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26970-LOC_Os03g26980|LOC_Os03g26970-LOC_Os03g26980|intergenic_region|LOC_Os03g26970-LOC_Os03g26980|||n.15431066A>G|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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307 3 15432664 SNP-3.15431310. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26970-LOC_Os03g26980|LOC_Os03g26970-LOC_Os03g26980|intergenic_region|LOC_Os03g26970-LOC_Os03g26980|||n.15432664C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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308 3 15433832 SNP-3.15432478. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26970-LOC_Os03g26980|LOC_Os03g26970-LOC_Os03g26980|intergenic_region|LOC_Os03g26970-LOC_Os03g26980|||n.15433832A>G|||||| GT 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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309 3 15434604 SNP-3.15433250. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26980-LOC_Os03g26990|LOC_Os03g26980-LOC_Os03g26990|intergenic_region|LOC_Os03g26980-LOC_Os03g26990|||n.15434604C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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310 3 15437886 SNP-3.15436532. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15437886A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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311 3 15442866 SNP-3.15441512. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15442866C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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312 3 15443878 SNP-3.15442524. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15443878A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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313 3 15445331 SNP-3.15443977. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15445331A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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314 3 15446453 SNP-3.15445099. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15446453C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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315 3 15447518 SNP-3.15446164. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15447518A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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316 3 15449713 SNP-3.15448359. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15449713A>G|||||| GT ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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317 3 15451422 SNP-3.15450068. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15451422A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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318 3 15451733 SNP-3.15450379. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15451733C>A|||||| GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/1 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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319 3 15452883 SNP-3.15451529. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15452883A>G|||||| GT 1/1 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 ./. 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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320 3 15453230 SNP-3.15451876. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g26990-LOC_Os03g27003|LOC_Os03g26990-LOC_Os03g27003|intergenic_region|LOC_Os03g26990-LOC_Os03g27003|||n.15453230A>G|||||| GT 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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321 3 15454100 SNP-3.15452746. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27003|LOC_Os03g27003|transcript|LOC_Os03g27003.1|protein_coding|2/3|c.38C>A|p.Ile13Asn|731/2436|38/228|13/75||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g27003|LOC_Os03g27003|transcript|LOC_Os03g27003.2|protein_coding|1/2|c.38C>A|p.Ile13Asn|837/1342|38/228|13/75||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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322 3 15454253 SNP-3.15452899. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27003|LOC_Os03g27003|transcript|LOC_Os03g27003.1|protein_coding|2/3|c.191C>A|p.Met64Lys|884/2436|191/228|64/75||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g27003|LOC_Os03g27003|transcript|LOC_Os03g27003.2|protein_coding|1/2|c.191C>A|p.Met64Lys|990/1342|191/228|64/75||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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323 3 15455450 SNP-3.15454096. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27003|LOC_Os03g27003|transcript|LOC_Os03g27003.1|protein_coding|2/2|c.*65-712A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g27003|LOC_Os03g27003|transcript|LOC_Os03g27003.2|protein_coding|1/1|c.*65-712A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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324 3 15456672 SNP-3.15455318. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27003|LOC_Os03g27003|transcript|LOC_Os03g27003.1|protein_coding|3/3|c.*575C>A|||||2382|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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325 3 15457547 SNP-3.15456193. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g27003|LOC_Os03g27003|transcript|LOC_Os03g27003.1|protein_coding|3/3|c.*1450A>G|||||3257|WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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326 3 15457947 SNP-3.15456593. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27003-LOC_Os03g27010|LOC_Os03g27003-LOC_Os03g27010|intergenic_region|LOC_Os03g27003-LOC_Os03g27010|||n.15457947C>A|||||| GT 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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327 3 15458910 SNP-3.15457556. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27003-LOC_Os03g27010|LOC_Os03g27003-LOC_Os03g27010|intergenic_region|LOC_Os03g27003-LOC_Os03g27010|||n.15458910C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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328 3 15459967 SNP-3.15458613. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27003-LOC_Os03g27010|LOC_Os03g27003-LOC_Os03g27010|intergenic_region|LOC_Os03g27003-LOC_Os03g27010|||n.15459967A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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329 3 15462917 SNP-3.15461563. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g27010|LOC_Os03g27010|transcript|LOC_Os03g27010.1|protein_coding|5/5|c.*182A>G|||||182|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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330 3 15463539 SNP-3.15462185. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27010-LOC_Os03g27019|LOC_Os03g27010-LOC_Os03g27019|intergenic_region|LOC_Os03g27010-LOC_Os03g27019|||n.15463539A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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331 3 15463651 SNP-3.15462297. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27010-LOC_Os03g27019|LOC_Os03g27010-LOC_Os03g27019|intergenic_region|LOC_Os03g27010-LOC_Os03g27019|||n.15463651A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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332 3 15473418 SNP-3.15472064. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27019|LOC_Os03g27019|transcript|LOC_Os03g27019.1|protein_coding|11/11|c.1699C>A|p.Lys567Lys|2067/2491|1699/1719|567/572||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27019|LOC_Os03g27019|transcript|LOC_Os03g27019.2|protein_coding|10/10|c.1699C>A|p.Lys567Lys|2035/2459|1699/1719|567/572||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27019|LOC_Os03g27019|transcript|LOC_Os03g27019.3|protein_coding|11/11|c.1696C>A|p.Lys566Lys|2064/2488|1696/1716|566/571||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27019|LOC_Os03g27019|transcript|LOC_Os03g27019.5|protein_coding|10/10|c.1627C>A|p.Lys543Lys|1995/2419|1627/1647|543/548||WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27019|LOC_Os03g27019|transcript|LOC_Os03g27019.6|protein_coding|10/10|c.*653C>A|||||748|WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27019|LOC_Os03g27019|transcript|LOC_Os03g27019.7|protein_coding|11/11|c.*599C>A|||||1472|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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333 3 15476947 SNP-3.15475593. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27030|LOC_Os03g27030|transcript|LOC_Os03g27030.3|protein_coding|1/4|c.103G>T|p.Thr35Ser|295/1169|103/555|35/184||WARNING_REF_DOES_NOT_MATCH_GENOME,A|intron_variant|MODIFIER|LOC_Os03g27030|LOC_Os03g27030|transcript|LOC_Os03g27030.1|protein_coding|4/7|c.303-137G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g27030|LOC_Os03g27030|transcript|LOC_Os03g27030.2|protein_coding|4/7|c.303-137G>T|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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334 3 15482936 SNP-3.15481582. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27040-LOC_Os03g27050|LOC_Os03g27040-LOC_Os03g27050|intergenic_region|LOC_Os03g27040-LOC_Os03g27050|||n.15482936A>G|||||| GT 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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335 3 15482992 SNP-3.15481638. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27040-LOC_Os03g27050|LOC_Os03g27040-LOC_Os03g27050|intergenic_region|LOC_Os03g27040-LOC_Os03g27050|||n.15482992C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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336 3 15483577 SNP-3.15482223. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27050|LOC_Os03g27050|transcript|LOC_Os03g27050.1|protein_coding|1/1|c.167A>G|p.Ser56Ser|167/393|167/393|56/130||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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337 3 15485632 SNP-3.15484278. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27050-LOC_Os03g27054|LOC_Os03g27050-LOC_Os03g27054|intergenic_region|LOC_Os03g27050-LOC_Os03g27054|||n.15485632A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/1 0/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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338 3 15486523 SNP-3.15485169. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27050-LOC_Os03g27054|LOC_Os03g27050-LOC_Os03g27054|intergenic_region|LOC_Os03g27050-LOC_Os03g27054|||n.15486523A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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339 3 15486613 SNP-3.15485259. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27050-LOC_Os03g27054|LOC_Os03g27050-LOC_Os03g27054|intergenic_region|LOC_Os03g27050-LOC_Os03g27054|||n.15486613C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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340 3 15487081 SNP-3.15485727. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27054|LOC_Os03g27054|transcript|LOC_Os03g27054.1|protein_coding|1/3|c.36A>G|p.Met12Met|36/423|36/423|12/140||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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341 3 15487224 SNP-3.15485870. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g27054|LOC_Os03g27054|transcript|LOC_Os03g27054.1|protein_coding|1/3|c.179A>G|p.Val60Gly|179/423|179/423|60/140||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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342 3 15487245 SNP-3.15485891. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g27054|LOC_Os03g27054|transcript|LOC_Os03g27054.1|protein_coding|1/3|c.200A>G|p.His67Arg|200/423|200/423|67/140|| GT ./. ./. 0/1 1/1 ./. 0/0 ./. ./. 0/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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343 3 15487265 SNP-3.15485911. C A . . PR;ANN=A|splice_donor_variant&intron_variant|HIGH|LOC_Os03g27054|LOC_Os03g27054|transcript|LOC_Os03g27054.1|protein_coding|1/2|c.219+1C>A||||||;LOF=(LOC_Os03g27054|LOC_Os03g27054|1|1.00) GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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344 3 15491015 SNP-3.15489661. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27054-LOC_Os03g27060|LOC_Os03g27054-LOC_Os03g27060|intergenic_region|LOC_Os03g27054-LOC_Os03g27060|||n.15491015C>A|||||| GT 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/1 ./. 1/1 ./. 0/0 ./. 0/1 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/1 ./. 0/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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345 3 15493570 SNP-3.15492216. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27070|LOC_Os03g27070|transcript|LOC_Os03g27070.1|protein_coding|1/2|c.224C>A|p.Thr75Lys|224/510|224/510|75/169|| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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346 3 15493738 SNP-3.15492384. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27070|LOC_Os03g27070|transcript|LOC_Os03g27070.1|protein_coding|2/2|c.285C>A|p.Ala95Ala|285/510|285/510|95/169||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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347 3 15494636 SNP-3.15493282. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27070-LOC_Os03g27080|LOC_Os03g27070-LOC_Os03g27080|intergenic_region|LOC_Os03g27070-LOC_Os03g27080|||n.15494636C>A|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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348 3 15497892 SNP-3.15496538. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27070-LOC_Os03g27080|LOC_Os03g27070-LOC_Os03g27080|intergenic_region|LOC_Os03g27070-LOC_Os03g27080|||n.15497892C>A|||||| GT 0/1 0/0 0/0 ./. ./. 0/1 ./. ./. ./. 0/0 0/1 ./. 0/1 ./. 1/1 0/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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349 3 15505717 SNP-3.15504363. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27080|LOC_Os03g27080|transcript|LOC_Os03g27080.1|protein_coding|3/5|c.828A>G|p.Glu276Glu|924/1921|828/1638|276/545||,G|synonymous_variant|LOW|LOC_Os03g27080|LOC_Os03g27080|transcript|LOC_Os03g27080.2|protein_coding|3/4|c.828A>G|p.Glu276Glu|924/2387|828/1530|276/509|| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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350 3 15507530 SNP-3.15506176. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g27080|LOC_Os03g27080|transcript|LOC_Os03g27080.1|protein_coding|5/5|c.1624A>G|p.Ser542Ala|1720/1921|1624/1638|542/545||WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g27080|LOC_Os03g27080|transcript|LOC_Os03g27080.2|protein_coding|4/4|c.*563A>G|||||563|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 1/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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351 3 15508267 SNP-3.15506913. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27080-LOC_Os03g27090|LOC_Os03g27080-LOC_Os03g27090|intergenic_region|LOC_Os03g27080-LOC_Os03g27090|||n.15508267C>A|||||| GT 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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352 3 15511291 SNP-3.15509937. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27080-LOC_Os03g27090|LOC_Os03g27080-LOC_Os03g27090|intergenic_region|LOC_Os03g27080-LOC_Os03g27090|||n.15511291A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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353 3 15512315 SNP-3.15510961. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27080-LOC_Os03g27090|LOC_Os03g27080-LOC_Os03g27090|intergenic_region|LOC_Os03g27080-LOC_Os03g27090|||n.15512315A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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354 3 15514427 SNP-3.15513073. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27090-LOC_Os03g27110|LOC_Os03g27090-LOC_Os03g27110|intergenic_region|LOC_Os03g27090-LOC_Os03g27110|||n.15514427A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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355 3 15516480 SNP-3.15515126. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27090-LOC_Os03g27110|LOC_Os03g27090-LOC_Os03g27110|intergenic_region|LOC_Os03g27090-LOC_Os03g27110|||n.15516480C>A|||||| GT ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/1 0/0 ./. ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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356 3 15519829 SNP-3.15518475. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27090-LOC_Os03g27110|LOC_Os03g27090-LOC_Os03g27110|intergenic_region|LOC_Os03g27090-LOC_Os03g27110|||n.15519829A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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357 3 15523120 SNP-3.15521766. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27090-LOC_Os03g27110|LOC_Os03g27090-LOC_Os03g27110|intergenic_region|LOC_Os03g27090-LOC_Os03g27110|||n.15523120C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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358 3 15523284 SNP-3.15521930. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27090-LOC_Os03g27110|LOC_Os03g27090-LOC_Os03g27110|intergenic_region|LOC_Os03g27090-LOC_Os03g27110|||n.15523284A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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359 3 15524641 SNP-3.15523287. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27090-LOC_Os03g27110|LOC_Os03g27090-LOC_Os03g27110|intergenic_region|LOC_Os03g27090-LOC_Os03g27110|||n.15524641C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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360 3 15529204 SNP-3.15527850. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27110|LOC_Os03g27110|transcript|LOC_Os03g27110.1|protein_coding|2/5|c.768A>G|p.Leu256Leu|872/1328|768/1017|256/338||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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361 3 15529402 SNP-3.15528048. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27110|LOC_Os03g27110|transcript|LOC_Os03g27110.1|protein_coding|3/4|c.860+18C>A|||||| GT 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 |
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362 3 15530319 SNP-3.15528965. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27110-LOC_Os03g27120|LOC_Os03g27110-LOC_Os03g27120|intergenic_region|LOC_Os03g27110-LOC_Os03g27120|||n.15530319A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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363 3 15530704 SNP-3.15529350. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g27120|LOC_Os03g27120|transcript|LOC_Os03g27120.1|protein_coding|4/4|c.*258T>C|||||258|WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. |
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364 3 15533512 SNP-3.15532158. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27120-LOC_Os03g27140|LOC_Os03g27120-LOC_Os03g27140|intergenic_region|LOC_Os03g27120-LOC_Os03g27140|||n.15533512A>G|||||| GT 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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365 3 15534597 SNP-3.15533243. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27120-LOC_Os03g27140|LOC_Os03g27120-LOC_Os03g27140|intergenic_region|LOC_Os03g27120-LOC_Os03g27140|||n.15534597C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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366 3 15534832 SNP-3.15533478. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27120-LOC_Os03g27140|LOC_Os03g27120-LOC_Os03g27140|intergenic_region|LOC_Os03g27120-LOC_Os03g27140|||n.15534832C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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367 3 15535412 SNP-3.15534058. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27120-LOC_Os03g27140|LOC_Os03g27120-LOC_Os03g27140|intergenic_region|LOC_Os03g27120-LOC_Os03g27140|||n.15535412A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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368 3 15550180 SNP-3.15548826. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27150-LOC_Os03g27160|LOC_Os03g27150-LOC_Os03g27160|intergenic_region|LOC_Os03g27150-LOC_Os03g27160|||n.15550180A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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369 3 15550690 SNP-3.15549336. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27150-LOC_Os03g27160|LOC_Os03g27150-LOC_Os03g27160|intergenic_region|LOC_Os03g27150-LOC_Os03g27160|||n.15550690C>A|||||| GT 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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370 3 15550878 SNP-3.15549524. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27150-LOC_Os03g27160|LOC_Os03g27150-LOC_Os03g27160|intergenic_region|LOC_Os03g27150-LOC_Os03g27160|||n.15550878A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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371 3 15551274 SNP-3.15549920. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27150-LOC_Os03g27160|LOC_Os03g27150-LOC_Os03g27160|intergenic_region|LOC_Os03g27150-LOC_Os03g27160|||n.15551274A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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372 3 15553792 SNP-3.15552438. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27150-LOC_Os03g27160|LOC_Os03g27150-LOC_Os03g27160|intergenic_region|LOC_Os03g27150-LOC_Os03g27160|||n.15553792A>G|||||| GT 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/1 0/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 ./. 0/1 1/1 0/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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373 3 15554798 SNP-3.15553444. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27150-LOC_Os03g27160|LOC_Os03g27150-LOC_Os03g27160|intergenic_region|LOC_Os03g27150-LOC_Os03g27160|||n.15554798C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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374 3 15558056 SNP-3.15556702. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27150-LOC_Os03g27160|LOC_Os03g27150-LOC_Os03g27160|intergenic_region|LOC_Os03g27150-LOC_Os03g27160|||n.15558056C>A|||||| GT 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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375 3 15558608 SNP-3.15557254. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27150-LOC_Os03g27160|LOC_Os03g27150-LOC_Os03g27160|intergenic_region|LOC_Os03g27150-LOC_Os03g27160|||n.15558608A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 0/1 ./. 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/1 0/1 0/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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376 3 15560579 SNP-3.15559225. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g27160|LOC_Os03g27160|transcript|LOC_Os03g27160.1|protein_coding|1/2|c.92A>G|p.Pro31Arg|92/276|92/276|31/91||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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377 3 15562827 SNP-3.15561473. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27160-LOC_Os03g27170|LOC_Os03g27160-LOC_Os03g27170|intergenic_region|LOC_Os03g27160-LOC_Os03g27170|||n.15562827A>G|||||| GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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378 3 15566406 SNP-3.15565052. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27170-LOC_Os03g27190|LOC_Os03g27170-LOC_Os03g27190|intergenic_region|LOC_Os03g27170-LOC_Os03g27190|||n.15566406C>A|||||| GT 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 ./. ./. ./. 0/1 1/1 1/1 ./. ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/0 ./. ./. 0/1 ./. 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 0/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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379 3 15567183 SNP-3.15565829. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27170-LOC_Os03g27190|LOC_Os03g27170-LOC_Os03g27190|intergenic_region|LOC_Os03g27170-LOC_Os03g27190|||n.15567183C>A|||||| GT 0/0 ./. 0/1 1/1 0/1 ./. 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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380 3 15568341 SNP-3.15566987. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g27190|LOC_Os03g27190|transcript|LOC_Os03g27190.1|protein_coding|5/5|c.871G>T|p.Lys291*|905/1347|871/909|291/302||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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381 3 15574292 SNP-3.15572938. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27190-LOC_Os03g27200|LOC_Os03g27190-LOC_Os03g27200|intergenic_region|LOC_Os03g27190-LOC_Os03g27200|||n.15574292C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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382 3 15575719 SNP-3.15574365. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27190-LOC_Os03g27200|LOC_Os03g27190-LOC_Os03g27200|intergenic_region|LOC_Os03g27190-LOC_Os03g27200|||n.15575719A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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383 3 15576415 SNP-3.15575061. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27190-LOC_Os03g27200|LOC_Os03g27190-LOC_Os03g27200|intergenic_region|LOC_Os03g27190-LOC_Os03g27200|||n.15576415C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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384 3 15576739 SNP-3.15575385. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27190-LOC_Os03g27200|LOC_Os03g27190-LOC_Os03g27200|intergenic_region|LOC_Os03g27190-LOC_Os03g27200|||n.15576739A>G|||||| GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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385 3 15577351 SNP-3.15575997. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27190-LOC_Os03g27200|LOC_Os03g27190-LOC_Os03g27200|intergenic_region|LOC_Os03g27190-LOC_Os03g27200|||n.15577351A>G|||||| GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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386 3 15577952 SNP-3.15576598. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27190-LOC_Os03g27200|LOC_Os03g27190-LOC_Os03g27200|intergenic_region|LOC_Os03g27190-LOC_Os03g27200|||n.15577952A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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387 3 15578355 SNP-3.15577001. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27190-LOC_Os03g27200|LOC_Os03g27190-LOC_Os03g27200|intergenic_region|LOC_Os03g27190-LOC_Os03g27200|||n.15578355C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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388 3 15578684 SNP-3.15577330. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27190-LOC_Os03g27200|LOC_Os03g27190-LOC_Os03g27200|intergenic_region|LOC_Os03g27190-LOC_Os03g27200|||n.15578684C>A|||||| GT 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/1 ./. 1/1 1/1 ./. 0/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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389 3 15579534 SNP-3.15578180. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27190-LOC_Os03g27200|LOC_Os03g27190-LOC_Os03g27200|intergenic_region|LOC_Os03g27190-LOC_Os03g27200|||n.15579534A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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390 3 15586161 SNP-3.15584807. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27210|LOC_Os03g27210|transcript|LOC_Os03g27210.1|protein_coding|2/3|c.684T>C|p.Thr228Thr|918/1543|684/1110|228/369||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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391 3 15587687 SNP-3.15586333. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15587687A>G|||||| GT 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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392 3 15588394 SNP-3.15587040. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15588394C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 |
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393 3 15589168 SNP-3.15587814. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15589168A>G|||||| GT ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. |
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394 3 15591769 SNP-3.15590415. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15591769A>G|||||| GT ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 ./. 0/1 1/1 ./. 0/0 ./. 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 |
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395 3 15592964 SNP-3.15591610. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15592964A>G|||||| GT ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/1 ./. ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 |
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396 3 15593033 SNP-3.15591679. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15593033A>G|||||| GT 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 |
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397 3 15593083 SNP-3.15591729. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15593083C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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398 3 15593983 SNP-3.15592629. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15593983C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 ./. ./. 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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399 3 15596333 SNP-3.15594979. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15596333A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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400 3 15597089 SNP-3.15595735. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15597089C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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401 3 15599575 SNP-3.15598221. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15599575A>G|||||| GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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402 3 15600047 SNP-3.15598693. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15600047A>G|||||| GT 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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403 3 15600414 SNP-3.15599060. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15600414C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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404 3 15601856 SNP-3.15600502. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15601856C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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405 3 15602755 SNP-3.15601401. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27210-LOC_Os03g27230|LOC_Os03g27210-LOC_Os03g27230|intergenic_region|LOC_Os03g27210-LOC_Os03g27230|||n.15602755C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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406 3 15604306 SNP-3.15602952. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g27230|LOC_Os03g27230|transcript|LOC_Os03g27230.1|protein_coding|1/5|c.365A>G|p.Lys122Arg|477/2117|365/1668|122/555|| GT 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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407 3 15605931 SNP-3.15604577. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27230|LOC_Os03g27230|transcript|LOC_Os03g27230.1|protein_coding|2/4|c.864-143A>G|||||| GT 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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408 3 15606188 SNP-3.15604834. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g27230|LOC_Os03g27230|transcript|LOC_Os03g27230.1|protein_coding|3/5|c.978A>G|p.Cys326Trp|1090/2117|978/1668|326/555||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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409 3 15606329 SNP-3.15604975. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27230|LOC_Os03g27230|transcript|LOC_Os03g27230.1|protein_coding|3/5|c.1119A>G|p.Val373Val|1231/2117|1119/1668|373/555||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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410 3 15607445 SNP-3.15606091. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27230|LOC_Os03g27230|transcript|LOC_Os03g27230.1|protein_coding|4/4|c.1387-690A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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411 3 15610080 SNP-3.15608726. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27230-LOC_Os03g27250|LOC_Os03g27230-LOC_Os03g27250|intergenic_region|LOC_Os03g27230-LOC_Os03g27250|||n.15610080C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
diff
changeset
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412 3 15610619 SNP-3.15609265. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27230-LOC_Os03g27250|LOC_Os03g27230-LOC_Os03g27250|intergenic_region|LOC_Os03g27230-LOC_Os03g27250|||n.15610619C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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413 3 15613875 SNP-3.15612521. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27230-LOC_Os03g27250|LOC_Os03g27230-LOC_Os03g27250|intergenic_region|LOC_Os03g27230-LOC_Os03g27250|||n.15613875C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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414 3 15615734 SNP-3.15614380. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27250|LOC_Os03g27250|transcript|LOC_Os03g27250.1|protein_coding|4/16|c.372C>A|p.His124Gln|481/3297|372/2862|124/953|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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415 3 15617233 SNP-3.15615879. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27250|LOC_Os03g27250|transcript|LOC_Os03g27250.1|protein_coding|8/16|c.1116C>A|p.Asp372Glu|1225/3297|1116/2862|372/953|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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416 3 15618492 SNP-3.15617138. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27250|LOC_Os03g27250|transcript|LOC_Os03g27250.1|protein_coding|11/16|c.1742C>A|p.Gln581Gln|1851/3297|1742/2862|581/953||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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417 3 15618508 SNP-3.15617154. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27250|LOC_Os03g27250|transcript|LOC_Os03g27250.1|protein_coding|11/16|c.1758C>A|p.Pro586Pro|1867/3297|1758/2862|586/953||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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418 3 15625137 SNP-3.15623783. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27260-LOC_Os03g27270|LOC_Os03g27260-LOC_Os03g27270|intergenic_region|LOC_Os03g27260-LOC_Os03g27270|||n.15625137C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 0/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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419 3 15625252 SNP-3.15623898. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27260-LOC_Os03g27270|LOC_Os03g27260-LOC_Os03g27270|intergenic_region|LOC_Os03g27260-LOC_Os03g27270|||n.15625252C>A|||||| GT ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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420 3 15626613 SNP-3.15625259. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27270|LOC_Os03g27270|transcript|LOC_Os03g27270.1|protein_coding|1/1|c.72C>A|p.Glu24Glu|72/663|72/663|24/220||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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421 3 15627582 SNP-3.15626228. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27270-LOC_Os03g27280|LOC_Os03g27270-LOC_Os03g27280|intergenic_region|LOC_Os03g27270-LOC_Os03g27280|||n.15627582C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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422 3 15630323 SNP-3.15628969. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27280|LOC_Os03g27280|transcript|LOC_Os03g27280.1|protein_coding|2/8|c.196-350G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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423 3 15630482 SNP-3.15629128. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27280|LOC_Os03g27280|transcript|LOC_Os03g27280.1|protein_coding|2/8|c.196-509G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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424 3 15632541 SNP-3.15631187. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27280-LOC_Os03g27290|LOC_Os03g27280-LOC_Os03g27290|intergenic_region|LOC_Os03g27280-LOC_Os03g27290|||n.15632541C>A|||||| GT 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/1 0/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/1 1/1 1/1 0/0 ./. 1/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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425 3 15633595 SNP-3.15632241. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27280-LOC_Os03g27290|LOC_Os03g27280-LOC_Os03g27290|intergenic_region|LOC_Os03g27280-LOC_Os03g27290|||n.15633595C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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426 3 15634843 SNP-3.15633489. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27280-LOC_Os03g27290|LOC_Os03g27280-LOC_Os03g27290|intergenic_region|LOC_Os03g27280-LOC_Os03g27290|||n.15634843C>A|||||| GT ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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427 3 15635264 SNP-3.15633910. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27280-LOC_Os03g27290|LOC_Os03g27280-LOC_Os03g27290|intergenic_region|LOC_Os03g27280-LOC_Os03g27290|||n.15635264C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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428 3 15638394 SNP-3.15637040. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27290|LOC_Os03g27290|transcript|LOC_Os03g27290.1|protein_coding|1/4|c.36+397A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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429 3 15638443 SNP-3.15637089. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27290|LOC_Os03g27290|transcript|LOC_Os03g27290.1|protein_coding|1/4|c.36+446C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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430 3 15640372 SNP-3.15639018. C A . . PR;ANN=A|splice_region_variant&synonymous_variant|LOW|LOC_Os03g27290|LOC_Os03g27290|transcript|LOC_Os03g27290.1|protein_coding|2/5|c.39C>A|p.Glu13Glu|160/946|39/510|13/169||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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431 3 15641375 SNP-3.15640021. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27290|LOC_Os03g27290|transcript|LOC_Os03g27290.1|protein_coding|4/4|c.456+395C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/1 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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432 3 15642911 SNP-3.15641557. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27290-LOC_Os03g27300|LOC_Os03g27290-LOC_Os03g27300|intergenic_region|LOC_Os03g27290-LOC_Os03g27300|||n.15642911C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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433 3 15644246 SNP-3.15642892. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27300|LOC_Os03g27300|transcript|LOC_Os03g27300.1|protein_coding|2/2|c.168G>T|p.His56His|168/198|168/198|56/65||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/1 0/0 ./. 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/1 0/0 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/1 1/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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434 3 15645382 SNP-3.15644028. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27300-LOC_Os03g27310|LOC_Os03g27300-LOC_Os03g27310|intergenic_region|LOC_Os03g27300-LOC_Os03g27310|||n.15645382C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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435 3 15648914 SNP-3.15647560. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.1|protein_coding|1/6|c.-59C>A|||||59|WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.4|protein_coding|1/5|c.-59C>A|||||59|WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.2|protein_coding|1/6|c.-59C>A|||||59|WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.3|protein_coding|1/6|c.-59C>A|||||59|WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.5|protein_coding|1/5|c.-507C>A|||||1178|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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436 3 15650573 SNP-3.15649219. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.1|protein_coding|5/6|c.504C>A|p.Thr168Thr|576/1349|504/1005|168/334||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.4|protein_coding|5/5|c.504C>A|p.Thr168Thr|576/1037|504/693|168/230||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.2|protein_coding|5/6|c.504C>A|p.Thr168Thr|576/1289|504/945|168/314||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.3|protein_coding|5/6|c.504C>A|p.Thr168Thr|576/1274|504/930|168/309||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.5|protein_coding|4/5|c.174C>A|p.Thr58Thr|694/1467|174/675|58/224||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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437 3 15651375 SNP-3.15650021. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.1|protein_coding|5/5|c.542-47C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.2|protein_coding|5/5|c.542-107C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.3|protein_coding|5/5|c.542-122C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g27320|LOC_Os03g27320|transcript|LOC_Os03g27320.5|protein_coding|4/4|c.212-47C>A|||||| GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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438 3 15661274 SNP-3.15659920. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g27340|LOC_Os03g27340|transcript|LOC_Os03g27340.1|protein_coding|1/3|c.-265T>C|||||265|,G|5_prime_UTR_variant|MODIFIER|LOC_Os03g27340|LOC_Os03g27340|transcript|LOC_Os03g27340.2|protein_coding|1/6|c.-265T>C|||||265| GT ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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439 3 15663019 SNP-3.15661665. C A . . PR;ANN=A|splice_region_variant&intron_variant|LOW|LOC_Os03g27350|LOC_Os03g27350|transcript|LOC_Os03g27350.1|protein_coding|3/7|c.516+4C>A||||||,A|splice_region_variant&intron_variant|LOW|LOC_Os03g27350|LOC_Os03g27350|transcript|LOC_Os03g27350.2|protein_coding|3/8|c.516+4C>A||||||,A|splice_region_variant&intron_variant|LOW|LOC_Os03g27350|LOC_Os03g27350|transcript|LOC_Os03g27350.3|protein_coding|4/9|c.258+4C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
440 3 15665019 SNP-3.15663665. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27350|LOC_Os03g27350|transcript|LOC_Os03g27350.1|protein_coding|8/8|c.1174C>A|p.Leu392Met|1455/2103|1174/1518|392/505||,A|missense_variant|MODERATE|LOC_Os03g27350|LOC_Os03g27350|transcript|LOC_Os03g27350.2|protein_coding|8/9|c.1174C>A|p.Leu392Met|1460/2018|1174/1425|392/474||,A|missense_variant|MODERATE|LOC_Os03g27350|LOC_Os03g27350|transcript|LOC_Os03g27350.3|protein_coding|9/10|c.916C>A|p.Leu306Met|1378/1936|916/1167|306/388|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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441 3 15665154 SNP-3.15663800. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27350|LOC_Os03g27350|transcript|LOC_Os03g27350.1|protein_coding|8/8|c.1309C>A|p.Val437Ile|1590/2103|1309/1518|437/505||WARNING_REF_DOES_NOT_MATCH_GENOME,A|splice_region_variant&intron_variant|LOW|LOC_Os03g27350|LOC_Os03g27350|transcript|LOC_Os03g27350.2|protein_coding|8/8|c.1220-4C>A||||||,A|splice_region_variant&intron_variant|LOW|LOC_Os03g27350|LOC_Os03g27350|transcript|LOC_Os03g27350.3|protein_coding|9/9|c.962-4C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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442 3 15667170 SNP-3.15665816. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27350-LOC_Os03g27360|LOC_Os03g27350-LOC_Os03g27360|intergenic_region|LOC_Os03g27350-LOC_Os03g27360|||n.15667170C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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443 3 15669666 SNP-3.15668312. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27360-LOC_Os03g27370|LOC_Os03g27360-LOC_Os03g27370|intergenic_region|LOC_Os03g27360-LOC_Os03g27370|||n.15669666C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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444 3 15670928 SNP-3.15669574. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27360-LOC_Os03g27370|LOC_Os03g27360-LOC_Os03g27370|intergenic_region|LOC_Os03g27360-LOC_Os03g27370|||n.15670928C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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445 3 15671045 SNP-3.15669691. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27360-LOC_Os03g27370|LOC_Os03g27360-LOC_Os03g27370|intergenic_region|LOC_Os03g27360-LOC_Os03g27370|||n.15671045C>A|||||| GT 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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446 3 15672470 SNP-3.15671116. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27360-LOC_Os03g27370|LOC_Os03g27360-LOC_Os03g27370|intergenic_region|LOC_Os03g27360-LOC_Os03g27370|||n.15672470C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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447 3 15674475 SNP-3.15673121. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27370|LOC_Os03g27370|transcript|LOC_Os03g27370.1|protein_coding|1/3|c.96+660C>A|||||| GT 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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448 3 15675533 SNP-3.15674179. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27370|LOC_Os03g27370|transcript|LOC_Os03g27370.1|protein_coding|1/3|c.97-89C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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449 3 15678560 SNP-3.15677206. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27370|LOC_Os03g27370|transcript|LOC_Os03g27370.1|protein_coding|4/4|c.2487A>G|p.Thr829Thr|2487/3141|2487/2556|829/851||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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450 3 15678743 SNP-3.15677389. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27370|LOC_Os03g27370|transcript|LOC_Os03g27370.1|protein_coding|4/4|c.*114C>A|||||114| GT 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 ./. 0/1 0/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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451 3 15679056 SNP-3.15677702. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27370|LOC_Os03g27370|transcript|LOC_Os03g27370.1|protein_coding|4/4|c.*427C>A|||||427| GT 0/0 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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452 3 15680226 SNP-3.15678872. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27370-LOC_Os03g27380|LOC_Os03g27370-LOC_Os03g27380|intergenic_region|LOC_Os03g27370-LOC_Os03g27380|||n.15680226C>A|||||| GT 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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453 3 15683355 SNP-3.15682001. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27380-LOC_Os03g27390|LOC_Os03g27380-LOC_Os03g27390|intergenic_region|LOC_Os03g27380-LOC_Os03g27390|||n.15683355C>A|||||| GT 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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454 3 15684816 SNP-3.15683462. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27380-LOC_Os03g27390|LOC_Os03g27380-LOC_Os03g27390|intergenic_region|LOC_Os03g27380-LOC_Os03g27390|||n.15684816A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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455 3 15685034 SNP-3.15683680. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27380-LOC_Os03g27390|LOC_Os03g27380-LOC_Os03g27390|intergenic_region|LOC_Os03g27380-LOC_Os03g27390|||n.15685034C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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456 3 15685344 SNP-3.15683990. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27380-LOC_Os03g27390|LOC_Os03g27380-LOC_Os03g27390|intergenic_region|LOC_Os03g27380-LOC_Os03g27390|||n.15685344C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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457 3 15686242 SNP-3.15684888. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27390|LOC_Os03g27390|transcript|LOC_Os03g27390.1|protein_coding|4/4|c.*116G>T|||||116|WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27390|LOC_Os03g27390|transcript|LOC_Os03g27390.2|protein_coding|4/4|c.*116G>T|||||116|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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458 3 15695215 SNP-3.15693861. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15695215C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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459 3 15695269 SNP-3.15693915. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15695269C>A|||||| GT ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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460 3 15696808 SNP-3.15695454. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15696808A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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461 3 15702651 SNP-3.15701297. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15702651C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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462 3 15703264 SNP-3.15701910. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15703264A>G|||||| GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/1 ./. 0/0 0/1 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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463 3 15704365 SNP-3.15703011. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15704365C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 ./. 0/0 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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464 3 15705364 SNP-3.15704010. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15705364C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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465 3 15707329 SNP-3.15705975. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15707329C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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466 3 15710789 SNP-3.15709435. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15710789C>A|||||| GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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467 3 15711523 SNP-3.15710169. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15711523C>A|||||| GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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468 3 15712612 SNP-3.15711258. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15712612C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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469 3 15712766 SNP-3.15711412. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15712766C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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470 3 15714336 SNP-3.15712982. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15714336C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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471 3 15716353 SNP-3.15714999. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15716353C>A|||||| GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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472 3 15717090 SNP-3.15715736. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27390-LOC_Os03g27400|LOC_Os03g27390-LOC_Os03g27400|intergenic_region|LOC_Os03g27390-LOC_Os03g27400|||n.15717090C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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473 3 15718646 SNP-3.15717292. C A . . PR;ANN=A|splice_region_variant&synonymous_variant|LOW|LOC_Os03g27400|LOC_Os03g27400|transcript|LOC_Os03g27400.1|protein_coding|5/7|c.1254G>T|p.Thr418Thr|1254/1452|1254/1452|418/483|| GT 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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474 3 15719030 SNP-3.15717676. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27400|LOC_Os03g27400|transcript|LOC_Os03g27400.1|protein_coding|4/7|c.940G>T|p.Ala314Ser|940/1452|940/1452|314/483|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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475 3 15720172 SNP-3.15718818. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27400|LOC_Os03g27400|transcript|LOC_Os03g27400.1|protein_coding|1/6|c.39-70T>C|||||| GT 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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476 3 15720536 SNP-3.15719182. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27400|LOC_Os03g27400|transcript|LOC_Os03g27400.1|protein_coding|1/6|c.39-434T>C|||||| GT ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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477 3 15720660 SNP-3.15719306. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27400|LOC_Os03g27400|transcript|LOC_Os03g27400.1|protein_coding|1/6|c.39-558T>C|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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478 3 15720901 SNP-3.15719547. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27400|LOC_Os03g27400|transcript|LOC_Os03g27400.1|protein_coding|1/6|c.38+731G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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479 3 15720951 SNP-3.15719597. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27400|LOC_Os03g27400|transcript|LOC_Os03g27400.1|protein_coding|1/6|c.38+681T>C|||||| GT ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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480 3 15722768 SNP-3.15721414. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27400-LOC_Os03g27410|LOC_Os03g27400-LOC_Os03g27410|intergenic_region|LOC_Os03g27400-LOC_Os03g27410|||n.15722768A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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481 3 15722844 SNP-3.15721490. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27400-LOC_Os03g27410|LOC_Os03g27400-LOC_Os03g27410|intergenic_region|LOC_Os03g27400-LOC_Os03g27410|||n.15722844A>G|||||| GT ./. 0/0 0/1 0/0 ./. 0/0 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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482 3 15723092 SNP-3.15721738. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27400-LOC_Os03g27410|LOC_Os03g27400-LOC_Os03g27410|intergenic_region|LOC_Os03g27400-LOC_Os03g27410|||n.15723092C>A|||||| GT ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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483 3 15725488 SNP-3.15724134. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27410-LOC_Os03g27420|LOC_Os03g27410-LOC_Os03g27420|intergenic_region|LOC_Os03g27410-LOC_Os03g27420|||n.15725488C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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484 3 15726847 SNP-3.15725493. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27410-LOC_Os03g27420|LOC_Os03g27410-LOC_Os03g27420|intergenic_region|LOC_Os03g27410-LOC_Os03g27420|||n.15726847C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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485 3 15729319 SNP-3.15727965. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27420|LOC_Os03g27420|transcript|LOC_Os03g27420.1|protein_coding|6/8|c.938-336G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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486 3 15729443 SNP-3.15728089. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27420|LOC_Os03g27420|transcript|LOC_Os03g27420.1|protein_coding|6/8|c.938-460G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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487 3 15730077 SNP-3.15728723. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27420|LOC_Os03g27420|transcript|LOC_Os03g27420.1|protein_coding|6/8|c.937+264G>T|||||| GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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488 3 15730296 SNP-3.15728942. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27420|LOC_Os03g27420|transcript|LOC_Os03g27420.1|protein_coding|6/8|c.937+45G>T|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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489 3 15732998 SNP-3.15731644. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27420-LOC_Os03g27430|LOC_Os03g27420-LOC_Os03g27430|intergenic_region|LOC_Os03g27420-LOC_Os03g27430|||n.15732998C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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490 3 15733340 SNP-3.15731986. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27420-LOC_Os03g27430|LOC_Os03g27420-LOC_Os03g27430|intergenic_region|LOC_Os03g27420-LOC_Os03g27430|||n.15733340C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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491 3 15736711 SNP-3.15735357. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27420-LOC_Os03g27430|LOC_Os03g27420-LOC_Os03g27430|intergenic_region|LOC_Os03g27420-LOC_Os03g27430|||n.15736711C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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492 3 15740027 SNP-3.15738673. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27420-LOC_Os03g27430|LOC_Os03g27420-LOC_Os03g27430|intergenic_region|LOC_Os03g27420-LOC_Os03g27430|||n.15740027C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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493 3 15741078 SNP-3.15739724. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27430-LOC_Os03g27440|LOC_Os03g27430-LOC_Os03g27440|intergenic_region|LOC_Os03g27430-LOC_Os03g27440|||n.15741078C>A|||||| GT 0/0 1/1 0/0 ./. 0/1 0/0 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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494 3 15742728 SNP-3.15741374. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27430-LOC_Os03g27440|LOC_Os03g27430-LOC_Os03g27440|intergenic_region|LOC_Os03g27430-LOC_Os03g27440|||n.15742728C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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495 3 15743490 SNP-3.15742136. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27430-LOC_Os03g27440|LOC_Os03g27430-LOC_Os03g27440|intergenic_region|LOC_Os03g27430-LOC_Os03g27440|||n.15743490C>A|||||| GT 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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496 3 15744367 SNP-3.15743013. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27430-LOC_Os03g27440|LOC_Os03g27430-LOC_Os03g27440|intergenic_region|LOC_Os03g27430-LOC_Os03g27440|||n.15744367C>A|||||| GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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497 3 15745506 SNP-3.15744152. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27440|LOC_Os03g27440|transcript|LOC_Os03g27440.1|protein_coding|1/2|c.206C>A|p.Pro69His|206/453|206/453|69/150|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/1 ./. 0/0 0/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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498 3 15748572 SNP-3.15747218. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27450|LOC_Os03g27450|transcript|LOC_Os03g27450.1|protein_coding|2/6|c.93+254C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g27450|LOC_Os03g27450|transcript|LOC_Os03g27450.2|protein_coding|1/6|c.-96-80C>A|||||| GT 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
499 3 15750549 SNP-3.15749195. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27450|LOC_Os03g27450|transcript|LOC_Os03g27450.1|protein_coding|5/6|c.406-437C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g27450|LOC_Os03g27450|transcript|LOC_Os03g27450.2|protein_coding|5/6|c.322-437C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
500 3 15751111 SNP-3.15749757. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27450|LOC_Os03g27450|transcript|LOC_Os03g27450.1|protein_coding|6/6|c.509+22C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g27450|LOC_Os03g27450|transcript|LOC_Os03g27450.2|protein_coding|6/6|c.425+22C>A|||||| GT ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
501 3 15751427 SNP-3.15750073. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27450|LOC_Os03g27450|transcript|LOC_Os03g27450.1|protein_coding|7/7|c.597C>A|p.Phe199Leu|860/1811|597/612|199/203||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g27450|LOC_Os03g27450|transcript|LOC_Os03g27450.2|protein_coding|7/7|c.513C>A|p.Phe171Leu|805/1343|513/528|171/175||WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27460|LOC_Os03g27460|transcript|LOC_Os03g27460.2|protein_coding|2/2|c.*1612G>T|||||3412|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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502 3 15762346 SNP-3.15760992. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27470-LOC_Os03g27480|LOC_Os03g27470-LOC_Os03g27480|intergenic_region|LOC_Os03g27470-LOC_Os03g27480|||n.15762346C>A|||||| GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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503 3 15763066 SNP-3.15761712. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27470-LOC_Os03g27480|LOC_Os03g27470-LOC_Os03g27480|intergenic_region|LOC_Os03g27470-LOC_Os03g27480|||n.15763066C>A|||||| GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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504 3 15764011 SNP-3.15762657. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g27480|LOC_Os03g27480|transcript|LOC_Os03g27480.1|protein_coding|11/12|c.1241T>C|p.Gln414Pro|1251/1748|1241/1413|414/470||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g27480|LOC_Os03g27480|transcript|LOC_Os03g27480.2|protein_coding|11/12|c.1238T>C|p.Gln413Pro|1245/1582|1238/1410|413/469||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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505 3 15766609 SNP-3.15765255. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27480|LOC_Os03g27480|transcript|LOC_Os03g27480.1|protein_coding|4/12|c.402G>T|p.Gly134Gly|412/1748|402/1413|134/470||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27480|LOC_Os03g27480|transcript|LOC_Os03g27480.2|protein_coding|4/12|c.402G>T|p.Gly134Gly|409/1582|402/1410|134/469||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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506 3 15766800 SNP-3.15765446. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27480|LOC_Os03g27480|transcript|LOC_Os03g27480.1|protein_coding|3/12|c.310G>T|p.Val104Phe|320/1748|310/1413|104/470||,A|missense_variant|MODERATE|LOC_Os03g27480|LOC_Os03g27480|transcript|LOC_Os03g27480.2|protein_coding|3/12|c.310G>T|p.Val104Phe|317/1582|310/1410|104/469|| GT 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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507 3 15767218 SNP-3.15765864. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27480|LOC_Os03g27480|transcript|LOC_Os03g27480.1|protein_coding|1/12|c.86G>T|p.Ile29Ile|96/1748|86/1413|29/470||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27480|LOC_Os03g27480|transcript|LOC_Os03g27480.2|protein_coding|1/12|c.86G>T|p.Ile29Ile|93/1582|86/1410|29/469||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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508 3 15769262 SNP-3.15767908. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27480-LOC_Os03g27484|LOC_Os03g27480-LOC_Os03g27484|intergenic_region|LOC_Os03g27480-LOC_Os03g27484|||n.15769262C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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509 3 15769501 SNP-3.15768147. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27480-LOC_Os03g27484|LOC_Os03g27480-LOC_Os03g27484|intergenic_region|LOC_Os03g27480-LOC_Os03g27484|||n.15769501A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/1 ./. 1/1 0/1 0/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 ./. 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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510 3 15770793 SNP-3.15769439. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27484|LOC_Os03g27484|transcript|LOC_Os03g27484.1|protein_coding|3/3|c.267+108T>C|||||| GT ./. 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/1 0/1 0/1 0/1 0/1 1/1 ./. 0/1 ./. ./. 0/1 0/0 0/1 0/1 1/1 0/0 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. ./. 0/1 1/1 1/1 ./. 0/1 0/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. 0/1 0/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/1 0/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 ./. 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/1 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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511 3 15771714 SNP-3.15770360. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27484|LOC_Os03g27484|transcript|LOC_Os03g27484.1|protein_coding|2/3|c.157+486G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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512 3 15773322 SNP-3.15771968. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27484-LOC_Os03g27490|LOC_Os03g27484-LOC_Os03g27490|intergenic_region|LOC_Os03g27484-LOC_Os03g27490|||n.15773322C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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513 3 15775573 SNP-3.15774219. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27490|LOC_Os03g27490|transcript|LOC_Os03g27490.1|protein_coding|1/1|c.259-421C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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514 3 15776058 SNP-3.15774704. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27490|LOC_Os03g27490|transcript|LOC_Os03g27490.1|protein_coding|2/2|c.323C>A|p.Thr108Asn|323/369|323/369|108/122|| GT 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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515 3 15777218 SNP-3.15775864. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27490-LOC_Os03g27510|LOC_Os03g27490-LOC_Os03g27510|intergenic_region|LOC_Os03g27490-LOC_Os03g27510|||n.15777218C>A|||||| GT 0/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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516 3 15779971 SNP-3.15778617. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27490-LOC_Os03g27510|LOC_Os03g27490-LOC_Os03g27510|intergenic_region|LOC_Os03g27490-LOC_Os03g27510|||n.15779971C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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517 3 15780788 SNP-3.15779434. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27510|LOC_Os03g27510|transcript|LOC_Os03g27510.1|protein_coding|9/11|c.840G>T|p.Gly280Gly|840/1014|840/1014|280/337||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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518 3 15782589 SNP-3.15781235. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27510|LOC_Os03g27510|transcript|LOC_Os03g27510.1|protein_coding|4/10|c.375+105G>T|||||| GT ./. 0/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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519 3 15782853 SNP-3.15781499. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27510|LOC_Os03g27510|transcript|LOC_Os03g27510.1|protein_coding|3/10|c.307-91G>T|||||| GT 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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520 3 15784197 SNP-3.15782843. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27510|LOC_Os03g27510|transcript|LOC_Os03g27510.1|protein_coding|2/11|c.150G>T|p.Lys50Asn|150/1014|150/1014|50/337|| GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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521 3 15792724 SNP-3.15791370. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27530|LOC_Os03g27530|transcript|LOC_Os03g27530.1|protein_coding|3/11|c.424G>T|p.Arg142Trp|424/1173|424/1173|142/390||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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522 3 15794165 SNP-3.15792811. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27530|LOC_Os03g27530|transcript|LOC_Os03g27530.1|protein_coding|2/10|c.413-1430G>T|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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523 3 15794967 SNP-3.15793613. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27530|LOC_Os03g27530|transcript|LOC_Os03g27530.1|protein_coding|2/10|c.412+675G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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524 3 15795700 SNP-3.15794346. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27530|LOC_Os03g27530|transcript|LOC_Os03g27530.1|protein_coding|2/11|c.354G>T|p.Met118Ile|354/1173|354/1173|118/390|| GT 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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525 3 15795737 SNP-3.15794383. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27530|LOC_Os03g27530|transcript|LOC_Os03g27530.1|protein_coding|2/11|c.317G>T|p.His106Leu|317/1173|317/1173|106/390||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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526 3 15795753 SNP-3.15794399. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27530|LOC_Os03g27530|transcript|LOC_Os03g27530.1|protein_coding|2/11|c.301G>T|p.Cys101Cys|301/1173|301/1173|101/390||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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527 3 15796375 SNP-3.15795021. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27530|LOC_Os03g27530|transcript|LOC_Os03g27530.1|protein_coding|1/10|c.128+156G>T|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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528 3 15802277 SNP-3.15800923. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27550-LOC_Os03g27560|LOC_Os03g27550-LOC_Os03g27560|intergenic_region|LOC_Os03g27550-LOC_Os03g27560|||n.15802277C>A|||||| GT 0/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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529 3 15803454 SNP-3.15802100. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27550-LOC_Os03g27560|LOC_Os03g27550-LOC_Os03g27560|intergenic_region|LOC_Os03g27550-LOC_Os03g27560|||n.15803454C>A|||||| GT 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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530 3 15803470 SNP-3.15802116. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27550-LOC_Os03g27560|LOC_Os03g27550-LOC_Os03g27560|intergenic_region|LOC_Os03g27550-LOC_Os03g27560|||n.15803470C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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531 3 15804561 SNP-3.15803207. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27550-LOC_Os03g27560|LOC_Os03g27550-LOC_Os03g27560|intergenic_region|LOC_Os03g27550-LOC_Os03g27560|||n.15804561C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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532 3 15804879 SNP-3.15803525. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27550-LOC_Os03g27560|LOC_Os03g27550-LOC_Os03g27560|intergenic_region|LOC_Os03g27550-LOC_Os03g27560|||n.15804879C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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533 3 15808214 SNP-3.15806860. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27560-LOC_Os03g27570|LOC_Os03g27560-LOC_Os03g27570|intergenic_region|LOC_Os03g27560-LOC_Os03g27570|||n.15808214C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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534 3 15808331 SNP-3.15806977. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27560-LOC_Os03g27570|LOC_Os03g27560-LOC_Os03g27570|intergenic_region|LOC_Os03g27560-LOC_Os03g27570|||n.15808331C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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535 3 15808814 SNP-3.15807460. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27560-LOC_Os03g27570|LOC_Os03g27560-LOC_Os03g27570|intergenic_region|LOC_Os03g27560-LOC_Os03g27570|||n.15808814C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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536 3 15809084 SNP-3.15807730. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27560-LOC_Os03g27570|LOC_Os03g27560-LOC_Os03g27570|intergenic_region|LOC_Os03g27560-LOC_Os03g27570|||n.15809084C>A|||||| GT ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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537 3 15809261 SNP-3.15807907. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27560-LOC_Os03g27570|LOC_Os03g27560-LOC_Os03g27570|intergenic_region|LOC_Os03g27560-LOC_Os03g27570|||n.15809261C>A|||||| GT 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 ./. ./. 0/1 0/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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538 3 15809606 SNP-3.15808252. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27560-LOC_Os03g27570|LOC_Os03g27560-LOC_Os03g27570|intergenic_region|LOC_Os03g27560-LOC_Os03g27570|||n.15809606C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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539 3 15809832 SNP-3.15808478. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27560-LOC_Os03g27570|LOC_Os03g27560-LOC_Os03g27570|intergenic_region|LOC_Os03g27560-LOC_Os03g27570|||n.15809832C>A|||||| GT 0/0 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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540 3 15810017 SNP-3.15808663. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27560-LOC_Os03g27570|LOC_Os03g27560-LOC_Os03g27570|intergenic_region|LOC_Os03g27560-LOC_Os03g27570|||n.15810017C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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541 3 15812305 SNP-3.15810951. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27580|LOC_Os03g27580|transcript|LOC_Os03g27580.1|protein_coding|1/2|c.90C>A|p.Asn30Lys|90/387|90/387|30/128|| GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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542 3 15813860 SNP-3.15812506. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27580-LOC_Os03g27590|LOC_Os03g27580-LOC_Os03g27590|intergenic_region|LOC_Os03g27580-LOC_Os03g27590|||n.15813860C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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543 3 15814019 SNP-3.15812665. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27580-LOC_Os03g27590|LOC_Os03g27580-LOC_Os03g27590|intergenic_region|LOC_Os03g27580-LOC_Os03g27590|||n.15814019C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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544 3 15814535 SNP-3.15813181. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27580-LOC_Os03g27590|LOC_Os03g27580-LOC_Os03g27590|intergenic_region|LOC_Os03g27580-LOC_Os03g27590|||n.15814535A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/1 0/0 0/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/1 0/0 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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545 3 15814961 SNP-3.15813607. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27580-LOC_Os03g27590|LOC_Os03g27580-LOC_Os03g27590|intergenic_region|LOC_Os03g27580-LOC_Os03g27590|||n.15814961C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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546 3 15815100 SNP-3.15813746. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27580-LOC_Os03g27590|LOC_Os03g27580-LOC_Os03g27590|intergenic_region|LOC_Os03g27580-LOC_Os03g27590|||n.15815100C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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547 3 15815426 SNP-3.15814072. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27580-LOC_Os03g27590|LOC_Os03g27580-LOC_Os03g27590|intergenic_region|LOC_Os03g27580-LOC_Os03g27590|||n.15815426C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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548 3 15816152 SNP-3.15814798. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27580-LOC_Os03g27590|LOC_Os03g27580-LOC_Os03g27590|intergenic_region|LOC_Os03g27580-LOC_Os03g27590|||n.15816152C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/1 1/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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549 3 15819390 SNP-3.15818036. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27580-LOC_Os03g27590|LOC_Os03g27580-LOC_Os03g27590|intergenic_region|LOC_Os03g27580-LOC_Os03g27590|||n.15819390C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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550 3 15820972 SNP-3.15819618. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27580-LOC_Os03g27590|LOC_Os03g27580-LOC_Os03g27590|intergenic_region|LOC_Os03g27580-LOC_Os03g27590|||n.15820972C>A|||||| GT 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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551 3 15824185 SNP-3.15822831. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.1|protein_coding|12/12|c.*27G>T|||||27|WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.2|protein_coding|12/12|c.*960G>T|||||1505|WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.3|protein_coding|8/8|c.*969G>T|||||1964|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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552 3 15824804 SNP-3.15823450. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.1|protein_coding|11/12|c.1281G>T|p.Thr427Thr|1318/1999|1281/1413|427/470||WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.2|protein_coding|11/12|c.*801G>T|||||886|WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.3|protein_coding|8/8|c.*350G>T|||||1345|WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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553 3 15826299 SNP-3.15824945. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.1|protein_coding|7/12|c.1029G>T|p.Asn343Asn|1066/1999|1029/1413|343/470||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.2|protein_coding|7/12|c.1029G>T|p.Asn343Asn|1047/2766|1029/1266|343/421||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.3|protein_coding|6/8|c.915G>T|p.Asn305Asn|1166/2807|915/1065|305/354||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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554 3 15826347 SNP-3.15824993. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.1|protein_coding|7/12|c.981G>T|p.Glu327Asp|1018/1999|981/1413|327/470||,A|missense_variant|MODERATE|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.2|protein_coding|7/12|c.981G>T|p.Glu327Asp|999/2766|981/1266|327/421||,A|missense_variant|MODERATE|LOC_Os03g27590|LOC_Os03g27590|transcript|LOC_Os03g27590.3|protein_coding|6/8|c.867G>T|p.Glu289Asp|1118/2807|867/1065|289/354|| GT 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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555 3 15830365 SNP-3.15829011. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27590-LOC_Os03g27610|LOC_Os03g27590-LOC_Os03g27610|intergenic_region|LOC_Os03g27590-LOC_Os03g27610|||n.15830365C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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556 3 15833405 SNP-3.15832051. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27590-LOC_Os03g27610|LOC_Os03g27590-LOC_Os03g27610|intergenic_region|LOC_Os03g27590-LOC_Os03g27610|||n.15833405C>A|||||| GT ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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557 3 15833795 SNP-3.15832441. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27590-LOC_Os03g27610|LOC_Os03g27590-LOC_Os03g27610|intergenic_region|LOC_Os03g27590-LOC_Os03g27610|||n.15833795C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 ./. 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/1 ./. ./. ./. 1/1 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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558 3 15835616 SNP-3.15834262. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27590-LOC_Os03g27610|LOC_Os03g27590-LOC_Os03g27610|intergenic_region|LOC_Os03g27590-LOC_Os03g27610|||n.15835616C>A|||||| GT ./. 1/1 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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559 3 15836215 SNP-3.15834861. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27590-LOC_Os03g27610|LOC_Os03g27590-LOC_Os03g27610|intergenic_region|LOC_Os03g27590-LOC_Os03g27610|||n.15836215A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. |
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560 3 15836610 SNP-3.15835256. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27590-LOC_Os03g27610|LOC_Os03g27590-LOC_Os03g27610|intergenic_region|LOC_Os03g27590-LOC_Os03g27610|||n.15836610C>A|||||| GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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561 3 15839721 SNP-3.15838367. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27610-LOC_Os03g27630|LOC_Os03g27610-LOC_Os03g27630|intergenic_region|LOC_Os03g27610-LOC_Os03g27630|||n.15839721C>A|||||| GT 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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562 3 15841147 SNP-3.15839793. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27610-LOC_Os03g27630|LOC_Os03g27610-LOC_Os03g27630|intergenic_region|LOC_Os03g27610-LOC_Os03g27630|||n.15841147C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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563 3 15842052 SNP-3.15840698. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27630|LOC_Os03g27630|transcript|LOC_Os03g27630.1|protein_coding|3/3|c.303G>T|p.Gly101Gly|303/456|303/456|101/151||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 |
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564 3 15842242 SNP-3.15840888. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27630|LOC_Os03g27630|transcript|LOC_Os03g27630.1|protein_coding|2/2|c.288+101G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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565 3 15847180 SNP-3.15845826. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27640|LOC_Os03g27640|transcript|LOC_Os03g27640.1|protein_coding|3/3|c.391C>A|p.Ile131Ile|391/762|391/762|131/253||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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566 3 15847403 SNP-3.15846049. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27640|LOC_Os03g27640|transcript|LOC_Os03g27640.1|protein_coding|3/3|c.614C>A|p.Pro205His|614/762|614/762|205/253|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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567 3 15847427 SNP-3.15846073. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27640|LOC_Os03g27640|transcript|LOC_Os03g27640.1|protein_coding|3/3|c.638C>A|p.Ile213Asn|638/762|638/762|213/253||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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568 3 15847481 SNP-3.15846127. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27640|LOC_Os03g27640|transcript|LOC_Os03g27640.1|protein_coding|3/3|c.692C>A|p.Tyr231Tyr|692/762|692/762|231/253||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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569 3 15848368 SNP-3.15847014. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27640-LOC_Os03g27670|LOC_Os03g27640-LOC_Os03g27670|intergenic_region|LOC_Os03g27640-LOC_Os03g27670|||n.15848368C>A|||||| GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/1 ./. 0/1 0/0 1/1 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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570 3 15848764 SNP-3.15847410. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27640-LOC_Os03g27670|LOC_Os03g27640-LOC_Os03g27670|intergenic_region|LOC_Os03g27640-LOC_Os03g27670|||n.15848764A>G|||||| GT ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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571 3 15848878 SNP-3.15847524. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27640-LOC_Os03g27670|LOC_Os03g27640-LOC_Os03g27670|intergenic_region|LOC_Os03g27640-LOC_Os03g27670|||n.15848878C>A|||||| GT 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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572 3 15853768 SNP-3.15852414. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27640-LOC_Os03g27670|LOC_Os03g27640-LOC_Os03g27670|intergenic_region|LOC_Os03g27640-LOC_Os03g27670|||n.15853768A>G|||||| GT ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/1 ./. 0/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 ./. 0/0 1/1 0/1 ./. 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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573 3 15857444 SNP-3.15856090. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27670|LOC_Os03g27670|transcript|LOC_Os03g27670.1|protein_coding|1/7|c.427-46G>T|||||| GT 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 ./. ./. 0/1 0/1 0/1 1/1 ./. ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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574 3 15860365 SNP-3.15859011. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27670-LOC_Os03g27680|LOC_Os03g27670-LOC_Os03g27680|intergenic_region|LOC_Os03g27670-LOC_Os03g27680|||n.15860365C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 0/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/1 ./. ./. 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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575 3 15860636 SNP-3.15859282. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27670-LOC_Os03g27680|LOC_Os03g27670-LOC_Os03g27680|intergenic_region|LOC_Os03g27670-LOC_Os03g27680|||n.15860636C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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576 3 15862776 SNP-3.15861422. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27670-LOC_Os03g27680|LOC_Os03g27670-LOC_Os03g27680|intergenic_region|LOC_Os03g27670-LOC_Os03g27680|||n.15862776A>G|||||| GT ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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577 3 15865627 SNP-3.15864273. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27680|LOC_Os03g27680|transcript|LOC_Os03g27680.1|protein_coding|1/2|c.41-1006G>T|||||| GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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578 3 15865779 SNP-3.15864425. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27680|LOC_Os03g27680|transcript|LOC_Os03g27680.1|protein_coding|1/2|c.41-1158G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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579 3 15867554 SNP-3.15866200. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27680-LOC_Os03g27690|LOC_Os03g27680-LOC_Os03g27690|intergenic_region|LOC_Os03g27680-LOC_Os03g27690|||n.15867554C>A|||||| GT 0/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/1 ./. 0/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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580 3 15869927 SNP-3.15868573. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27680-LOC_Os03g27690|LOC_Os03g27680-LOC_Os03g27690|intergenic_region|LOC_Os03g27680-LOC_Os03g27690|||n.15869927C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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581 3 15869964 SNP-3.15868610. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27680-LOC_Os03g27690|LOC_Os03g27680-LOC_Os03g27690|intergenic_region|LOC_Os03g27680-LOC_Os03g27690|||n.15869964C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 0/1 ./. 0/1 0/1 1/1 0/1 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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582 3 15871283 SNP-3.15869929. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27680-LOC_Os03g27690|LOC_Os03g27680-LOC_Os03g27690|intergenic_region|LOC_Os03g27680-LOC_Os03g27690|||n.15871283C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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583 3 15871582 SNP-3.15870228. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27680-LOC_Os03g27690|LOC_Os03g27680-LOC_Os03g27690|intergenic_region|LOC_Os03g27680-LOC_Os03g27690|||n.15871582C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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584 3 15872706 SNP-3.15871352. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27680-LOC_Os03g27690|LOC_Os03g27680-LOC_Os03g27690|intergenic_region|LOC_Os03g27680-LOC_Os03g27690|||n.15872706C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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585 3 15873707 SNP-3.15872353. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27690|LOC_Os03g27690|transcript|LOC_Os03g27690.1|protein_coding|1/1|c.35C>A|p.Ile12Lys|35/309|35/309|12/102||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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586 3 15874648 SNP-3.15873294. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27690-LOC_Os03g27700|LOC_Os03g27690-LOC_Os03g27700|intergenic_region|LOC_Os03g27690-LOC_Os03g27700|||n.15874648C>A|||||| GT 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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587 3 15877499 SNP-3.15876145. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27690-LOC_Os03g27700|LOC_Os03g27690-LOC_Os03g27700|intergenic_region|LOC_Os03g27690-LOC_Os03g27700|||n.15877499C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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588 3 15877965 SNP-3.15876611. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27700|LOC_Os03g27700|transcript|LOC_Os03g27700.1|protein_coding|4/4|c.471-19G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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589 3 15881921 SNP-3.15880567. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27700-LOC_Os03g27710|LOC_Os03g27700-LOC_Os03g27710|intergenic_region|LOC_Os03g27700-LOC_Os03g27710|||n.15881921C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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590 3 15883684 SNP-3.15882330. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27710|LOC_Os03g27710|transcript|LOC_Os03g27710.1|protein_coding|1/4|c.52+109A>G|||||| GT 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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591 3 15884489 SNP-3.15883135. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27710|LOC_Os03g27710|transcript|LOC_Os03g27710.1|protein_coding|1/4|c.52+914C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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592 3 15886037 SNP-3.15884683. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27710|LOC_Os03g27710|transcript|LOC_Os03g27710.1|protein_coding|2/5|c.579C>A|p.Val193Val|579/1278|579/1278|193/425|| GT 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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593 3 15886252 SNP-3.15884898. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27710|LOC_Os03g27710|transcript|LOC_Os03g27710.1|protein_coding|2/4|c.588+206C>A|||||| GT 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/1 ./. 0/0 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 ./. 1/1 0/0 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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594 3 15886445 SNP-3.15885091. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27710|LOC_Os03g27710|transcript|LOC_Os03g27710.1|protein_coding|2/4|c.589-254C>A|||||| GT 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/1 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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595 3 15897972 SNP-3.15896618. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27730-LOC_Os03g27740|LOC_Os03g27730-LOC_Os03g27740|intergenic_region|LOC_Os03g27730-LOC_Os03g27740|||n.15897972C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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596 3 15898240 SNP-3.15896886. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27730-LOC_Os03g27740|LOC_Os03g27730-LOC_Os03g27740|intergenic_region|LOC_Os03g27730-LOC_Os03g27740|||n.15898240C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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597 3 15900299 SNP-3.15898945. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27730-LOC_Os03g27740|LOC_Os03g27730-LOC_Os03g27740|intergenic_region|LOC_Os03g27730-LOC_Os03g27740|||n.15900299C>A|||||| GT ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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598 3 15902939 SNP-3.15901585. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27740-LOC_Os03g27750|LOC_Os03g27740-LOC_Os03g27750|intergenic_region|LOC_Os03g27740-LOC_Os03g27750|||n.15902939C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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599 3 15903204 SNP-3.15901850. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27740-LOC_Os03g27750|LOC_Os03g27740-LOC_Os03g27750|intergenic_region|LOC_Os03g27740-LOC_Os03g27750|||n.15903204C>A|||||| GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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600 3 15903642 SNP-3.15902288. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27740-LOC_Os03g27750|LOC_Os03g27740-LOC_Os03g27750|intergenic_region|LOC_Os03g27740-LOC_Os03g27750|||n.15903642C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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601 3 15904461 SNP-3.15903107. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27740-LOC_Os03g27750|LOC_Os03g27740-LOC_Os03g27750|intergenic_region|LOC_Os03g27740-LOC_Os03g27750|||n.15904461C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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602 3 15907342 SNP-3.15905988. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27750-LOC_Os03g27760|LOC_Os03g27750-LOC_Os03g27760|intergenic_region|LOC_Os03g27750-LOC_Os03g27760|||n.15907342C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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603 3 15910577 SNP-3.15909223. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27760|LOC_Os03g27760|transcript|LOC_Os03g27760.1|protein_coding|2/6|c.145G>T|p.Ala49Ser|462/1682|145/927|49/308|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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604 3 15912349 SNP-3.15910995. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15912349C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 1/1 ./. ./. 0/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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605 3 15912431 SNP-3.15911077. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15912431C>A|||||| GT 0/0 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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606 3 15915064 SNP-3.15913710. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15915064C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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607 3 15915708 SNP-3.15914354. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15915708A>G|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/1 0/1 ./. 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/1 0/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. ./. 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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608 3 15916013 SNP-3.15914659. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15916013C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 ./. 0/1 0/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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609 3 15917390 SNP-3.15916036. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15917390C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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610 3 15917486 SNP-3.15916132. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15917486C>A|||||| GT 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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611 3 15917567 SNP-3.15916213. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15917567C>A|||||| GT 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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612 3 15917764 SNP-3.15916410. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15917764C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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613 3 15919165 SNP-3.15917811. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15919165C>A|||||| GT ./. 1/1 0/0 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 ./. 0/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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614 3 15919943 SNP-3.15918589. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15919943C>A|||||| GT 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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615 3 15921499 SNP-3.15920145. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15921499A>G|||||| GT 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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616 3 15922395 SNP-3.15921041. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15922395A>G|||||| GT 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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617 3 15922480 SNP-3.15921126. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15922480C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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618 3 15923846 SNP-3.15922492. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27760-LOC_Os03g27770|LOC_Os03g27760-LOC_Os03g27770|intergenic_region|LOC_Os03g27760-LOC_Os03g27770|||n.15923846C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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619 3 15923992 SNP-3.15922638. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g27770|LOC_Os03g27770|transcript|LOC_Os03g27770.1|protein_coding|4/4|c.*621T>C|||||621|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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620 3 15927697 SNP-3.15926343. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27770-LOC_Os03g27780|LOC_Os03g27770-LOC_Os03g27780|intergenic_region|LOC_Os03g27770-LOC_Os03g27780|||n.15927697A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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621 3 15929137 SNP-3.15927783. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27770-LOC_Os03g27780|LOC_Os03g27770-LOC_Os03g27780|intergenic_region|LOC_Os03g27770-LOC_Os03g27780|||n.15929137A>G|||||| GT 0/0 0/1 1/1 1/1 ./. 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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622 3 15929691 SNP-3.15928337. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27770-LOC_Os03g27780|LOC_Os03g27770-LOC_Os03g27780|intergenic_region|LOC_Os03g27770-LOC_Os03g27780|||n.15929691C>A|||||| GT ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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623 3 15930366 SNP-3.15929012. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27770-LOC_Os03g27780|LOC_Os03g27770-LOC_Os03g27780|intergenic_region|LOC_Os03g27770-LOC_Os03g27780|||n.15930366C>A|||||| GT 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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624 3 15931727 SNP-3.15930373. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27770-LOC_Os03g27780|LOC_Os03g27770-LOC_Os03g27780|intergenic_region|LOC_Os03g27770-LOC_Os03g27780|||n.15931727A>G|||||| GT 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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625 3 15931993 SNP-3.15930639. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27770-LOC_Os03g27780|LOC_Os03g27770-LOC_Os03g27780|intergenic_region|LOC_Os03g27770-LOC_Os03g27780|||n.15931993A>G|||||| GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. ./. 0/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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626 3 15934316 SNP-3.15932962. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27780|LOC_Os03g27780|transcript|LOC_Os03g27780.1|protein_coding|2/8|c.413-22C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g27780|LOC_Os03g27780|transcript|LOC_Os03g27780.2|protein_coding|2/7|c.413-22C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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627 3 15937104 SNP-3.15935750. C A . . PR;ANN=A|splice_region_variant&intron_variant|LOW|LOC_Os03g27790|LOC_Os03g27790|transcript|LOC_Os03g27790.1|protein_coding|2/2|c.438+5G>T|||||| GT 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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628 3 15940139 SNP-3.15938785. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27800|LOC_Os03g27800|transcript|LOC_Os03g27800.1|protein_coding|3/3|c.1630G>T|p.Pro544Ser|1894/2897|1630/2331|544/776||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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629 3 15941372 SNP-3.15940018. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27800|LOC_Os03g27800|transcript|LOC_Os03g27800.1|protein_coding|2/2|c.522+100T>C|||||| GT ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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630 3 15943543 SNP-3.15942189. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15943543C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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631 3 15943766 SNP-3.15942412. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15943766A>G|||||| GT 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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632 3 15944709 SNP-3.15943355. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15944709C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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633 3 15945019 SNP-3.15943665. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15945019C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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634 3 15945110 SNP-3.15943756. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15945110A>G|||||| GT ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/1 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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635 3 15946086 SNP-3.15944732. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15946086C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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636 3 15947339 SNP-3.15945985. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15947339C>A|||||| GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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637 3 15947702 SNP-3.15946348. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15947702A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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638 3 15947731 SNP-3.15946377. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15947731A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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639 3 15948026 SNP-3.15946672. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27800-LOC_Os03g27810|LOC_Os03g27800-LOC_Os03g27810|intergenic_region|LOC_Os03g27800-LOC_Os03g27810|||n.15948026C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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640 3 15950880 SNP-3.15949526. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g27810|LOC_Os03g27810|transcript|LOC_Os03g27810.1|protein_coding|2/2|c.569C>A|p.Leu190*|569/582|569/582|190/193||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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641 3 15953451 SNP-3.15952097. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27810-LOC_Os03g27820|LOC_Os03g27810-LOC_Os03g27820|intergenic_region|LOC_Os03g27810-LOC_Os03g27820|||n.15953451C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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642 3 15954887 SNP-3.15953533. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27810-LOC_Os03g27820|LOC_Os03g27810-LOC_Os03g27820|intergenic_region|LOC_Os03g27810-LOC_Os03g27820|||n.15954887A>G|||||| GT 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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643 3 15955221 SNP-3.15953867. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27810-LOC_Os03g27820|LOC_Os03g27810-LOC_Os03g27820|intergenic_region|LOC_Os03g27810-LOC_Os03g27820|||n.15955221A>G|||||| GT ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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644 3 15956001 SNP-3.15954647. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27810-LOC_Os03g27820|LOC_Os03g27810-LOC_Os03g27820|intergenic_region|LOC_Os03g27810-LOC_Os03g27820|||n.15956001C>A|||||| GT 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 ./. 1/1 0/1 ./. ./. ./. ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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645 3 15962868 SNP-3.15961514. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27820|LOC_Os03g27820|transcript|LOC_Os03g27820.1|protein_coding|3/6|c.445-503A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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646 3 15963726 SNP-3.15962372. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27820|LOC_Os03g27820|transcript|LOC_Os03g27820.1|protein_coding|5/7|c.724C>A|p.His242Asn|1005/3028|724/2337|242/778|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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647 3 15964296 SNP-3.15962942. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27820|LOC_Os03g27820|transcript|LOC_Os03g27820.1|protein_coding|6/7|c.1208C>A|p.Val403Asp|1489/3028|1208/2337|403/778||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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648 3 15964532 SNP-3.15963178. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27820|LOC_Os03g27820|transcript|LOC_Os03g27820.1|protein_coding|6/7|c.1444C>A|p.Ser482Thr|1725/3028|1444/2337|482/778||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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649 3 15966855 SNP-3.15965501. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27820-LOC_Os03g27830|LOC_Os03g27820-LOC_Os03g27830|intergenic_region|LOC_Os03g27820-LOC_Os03g27830|||n.15966855A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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650 3 15968302 SNP-3.15966948. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g27830|LOC_Os03g27830|transcript|LOC_Os03g27830.1|protein_coding|1/2|c.*685T>C|||||685|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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651 3 15968647 SNP-3.15967293. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g27830|LOC_Os03g27830|transcript|LOC_Os03g27830.1|protein_coding|1/2|c.*340T>C|||||340| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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652 3 15968918 SNP-3.15967564. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g27830|LOC_Os03g27830|transcript|LOC_Os03g27830.1|protein_coding|1/2|c.*69T>C|||||69|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 ./. 0/1 0/0 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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653 3 15969236 SNP-3.15967882. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27830|LOC_Os03g27830|transcript|LOC_Os03g27830.1|protein_coding|1/2|c.570T>C|p.Leu190Leu|578/2715|570/819|190/272||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/1 ./. ./. ./. ./. ./. 0/1 ./. ./. 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. 0/1 ./. ./. ./. 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 ./. ./. ./. 0/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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654 3 15970345 SNP-3.15968991. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15970345C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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655 3 15970854 SNP-3.15969500. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15970854A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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656 3 15971326 SNP-3.15969972. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15971326A>G|||||| GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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657 3 15972105 SNP-3.15970751. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15972105A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/1 1/1 ./. ./. ./. 0/0 1/1 0/1 0/0 ./. 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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658 3 15974601 SNP-3.15973247. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15974601C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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659 3 15976989 SNP-3.15975635. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15976989A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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660 3 15977444 SNP-3.15976090. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15977444A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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661 3 15978213 SNP-3.15976859. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15978213C>A|||||| GT 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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662 3 15979612 SNP-3.15978258. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15979612A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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663 3 15979735 SNP-3.15978381. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15979735A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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664 3 15980358 SNP-3.15979004. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15980358A>G|||||| GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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665 3 15981578 SNP-3.15980224. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15981578C>A|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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666 3 15983192 SNP-3.15981838. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15983192C>A|||||| GT ./. 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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667 3 15985025 SNP-3.15983671. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27830-LOC_Os03g27840|LOC_Os03g27830-LOC_Os03g27840|intergenic_region|LOC_Os03g27830-LOC_Os03g27840|||n.15985025A>G|||||| GT ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 ./. ./. 1/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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668 3 15988366 SNP-3.15987012. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27840|LOC_Os03g27840|transcript|LOC_Os03g27840.1|protein_coding|3/12|c.386-66C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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669 3 15989426 SNP-3.15988072. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27840|LOC_Os03g27840|transcript|LOC_Os03g27840.1|protein_coding|4/12|c.462-722C>A|||||| GT ./. 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 ./. ./. 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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670 3 15990244 SNP-3.15988890. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27840|LOC_Os03g27840|transcript|LOC_Os03g27840.1|protein_coding|5/13|c.558C>A|p.Lys186Lys|679/1999|558/1596|186/531||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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671 3 15991434 SNP-3.15990080. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27840|LOC_Os03g27840|transcript|LOC_Os03g27840.1|protein_coding|9/13|c.1188C>A|p.Glu396Glu|1309/1999|1188/1596|396/531||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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672 3 15997983 SNP-3.15996629. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27840-LOC_Os03g27850|LOC_Os03g27840-LOC_Os03g27850|intergenic_region|LOC_Os03g27840-LOC_Os03g27850|||n.15997983C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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673 3 15998144 SNP-3.15996790. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27840-LOC_Os03g27850|LOC_Os03g27840-LOC_Os03g27850|intergenic_region|LOC_Os03g27840-LOC_Os03g27850|||n.15998144C>A|||||| GT 0/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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674 3 16000772 SNP-3.15999418. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27850-LOC_Os03g27860|LOC_Os03g27850-LOC_Os03g27860|intergenic_region|LOC_Os03g27850-LOC_Os03g27860|||n.16000772A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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675 3 16001391 SNP-3.16000037. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27850-LOC_Os03g27860|LOC_Os03g27850-LOC_Os03g27860|intergenic_region|LOC_Os03g27850-LOC_Os03g27860|||n.16001391A>G|||||| GT 1/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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676 3 16001554 SNP-3.16000200. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27850-LOC_Os03g27860|LOC_Os03g27850-LOC_Os03g27860|intergenic_region|LOC_Os03g27850-LOC_Os03g27860|||n.16001554A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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677 3 16012630 SNP-3.16011276. A G . . PR;ANN=G|splice_region_variant&intron_variant|LOW|LOC_Os03g27870|LOC_Os03g27870|transcript|LOC_Os03g27870.1|protein_coding|6/9|c.478-3T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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678 3 16012660 SNP-3.16011306. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27870|LOC_Os03g27870|transcript|LOC_Os03g27870.1|protein_coding|6/9|c.478-33G>T|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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679 3 16019024 SNP-3.16017670. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27880-LOC_Os03g27890|LOC_Os03g27880-LOC_Os03g27890|intergenic_region|LOC_Os03g27880-LOC_Os03g27890|||n.16019024A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 0/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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680 3 16019413 SNP-3.16018059. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27880-LOC_Os03g27890|LOC_Os03g27880-LOC_Os03g27890|intergenic_region|LOC_Os03g27880-LOC_Os03g27890|||n.16019413C>A|||||| GT 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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681 3 16020114 SNP-3.16018760. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27890|LOC_Os03g27890|transcript|LOC_Os03g27890.1|protein_coding|1/1|c.214+211A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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682 3 16021654 SNP-3.16020300. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27890|LOC_Os03g27890|transcript|LOC_Os03g27890.1|protein_coding|2/2|c.256A>G|p.Asp86Asp|256/447|256/447|86/148||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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683 3 16022203 SNP-3.16020849. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27890-LOC_Os03g27900|LOC_Os03g27890-LOC_Os03g27900|intergenic_region|LOC_Os03g27890-LOC_Os03g27900|||n.16022203A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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684 3 16023464 SNP-3.16022110. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27890-LOC_Os03g27900|LOC_Os03g27890-LOC_Os03g27900|intergenic_region|LOC_Os03g27890-LOC_Os03g27900|||n.16023464C>A|||||| GT 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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685 3 16026232 SNP-3.16024878. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27900-LOC_Os03g27910|LOC_Os03g27900-LOC_Os03g27910|intergenic_region|LOC_Os03g27900-LOC_Os03g27910|||n.16026232A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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686 3 16030064 SNP-3.16028710. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27910|LOC_Os03g27910|transcript|LOC_Os03g27910.1|protein_coding|4/7|c.3093A>G|p.Ser1031Ser|3093/3981|3093/3981|1031/1326||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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687 3 16031042 SNP-3.16029688. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27910|LOC_Os03g27910|transcript|LOC_Os03g27910.1|protein_coding|5/6|c.3461-171A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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688 3 16031456 SNP-3.16030102. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27910|LOC_Os03g27910|transcript|LOC_Os03g27910.1|protein_coding|6/6|c.3618+86A>G|||||| GT 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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689 3 16034617 SNP-3.16033263. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27920-LOC_Os03g27930|LOC_Os03g27920-LOC_Os03g27930|intergenic_region|LOC_Os03g27920-LOC_Os03g27930|||n.16034617A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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690 3 16035032 SNP-3.16033678. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27920-LOC_Os03g27930|LOC_Os03g27920-LOC_Os03g27930|intergenic_region|LOC_Os03g27920-LOC_Os03g27930|||n.16035032A>G|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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691 3 16038010 SNP-3.16036656. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27920-LOC_Os03g27930|LOC_Os03g27920-LOC_Os03g27930|intergenic_region|LOC_Os03g27920-LOC_Os03g27930|||n.16038010A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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692 3 16039908 SNP-3.16038554. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27930|LOC_Os03g27930|transcript|LOC_Os03g27930.1|protein_coding|2/11|c.150+456C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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693 3 16040124 SNP-3.16038770. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27930|LOC_Os03g27930|transcript|LOC_Os03g27930.1|protein_coding|2/11|c.150+672A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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694 3 16041706 SNP-3.16040352. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27930|LOC_Os03g27930|transcript|LOC_Os03g27930.1|protein_coding|5/12|c.694C>A|p.Lys232Lys|853/2676|694/2073|232/690||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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695 3 16041891 SNP-3.16040537. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27930|LOC_Os03g27930|transcript|LOC_Os03g27930.1|protein_coding|5/12|c.879A>G|p.Ser293Ser|1038/2676|879/2073|293/690||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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696 3 16043518 SNP-3.16042164. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g27930|LOC_Os03g27930|transcript|LOC_Os03g27930.1|protein_coding|9/12|c.1629C>A|p.Pro543Pro|1788/2676|1629/2073|543/690|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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697 3 16044322 SNP-3.16042968. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27930|LOC_Os03g27930|transcript|LOC_Os03g27930.1|protein_coding|9/11|c.1732-168A>G|||||| GT 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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698 3 16046247 SNP-3.16044893. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27930-LOC_Os03g27940|LOC_Os03g27930-LOC_Os03g27940|intergenic_region|LOC_Os03g27930-LOC_Os03g27940|||n.16046247A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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699 3 16049910 SNP-3.16048556. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27940-LOC_Os03g27950|LOC_Os03g27940-LOC_Os03g27950|intergenic_region|LOC_Os03g27940-LOC_Os03g27950|||n.16049910A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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700 3 16051156 SNP-3.16049802. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27940-LOC_Os03g27950|LOC_Os03g27940-LOC_Os03g27950|intergenic_region|LOC_Os03g27940-LOC_Os03g27950|||n.16051156A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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701 3 16052453 SNP-3.16051099. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.1|protein_coding|3/12|c.365+35A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.2|protein_coding|3/12|c.272+128A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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702 3 16052936 SNP-3.16051582. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.1|protein_coding|3/12|c.365+518A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.2|protein_coding|3/12|c.272+611A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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703 3 16053713 SNP-3.16052359. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.1|protein_coding|3/12|c.366-744A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.2|protein_coding|3/12|c.273-744A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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704 3 16054009 SNP-3.16052655. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.1|protein_coding|3/12|c.366-448A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.2|protein_coding|3/12|c.273-448A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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705 3 16056312 SNP-3.16054958. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.1|protein_coding|8/12|c.794+91C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.2|protein_coding|8/12|c.701+91C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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706 3 16057891 SNP-3.16056537. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.1|protein_coding|13/13|c.1561A>G|p.Leu521Val|1732/2166|1561/1590|521/529||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g27950|LOC_Os03g27950|transcript|LOC_Os03g27950.2|protein_coding|13/13|c.1468A>G|p.Leu490Val|1639/2073|1468/1497|490/498||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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707 3 16058615 SNP-3.16057261. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27950-LOC_Os03g27960|LOC_Os03g27950-LOC_Os03g27960|intergenic_region|LOC_Os03g27950-LOC_Os03g27960|||n.16058615A>G|||||| GT ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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changeset
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708 3 16059332 SNP-3.16057978. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27950-LOC_Os03g27960|LOC_Os03g27950-LOC_Os03g27960|intergenic_region|LOC_Os03g27950-LOC_Os03g27960|||n.16059332C>A|||||| GT 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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709 3 16059864 SNP-3.16058510. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27950-LOC_Os03g27960|LOC_Os03g27950-LOC_Os03g27960|intergenic_region|LOC_Os03g27950-LOC_Os03g27960|||n.16059864A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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710 3 16070188 SNP-3.16068834. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27970-LOC_Os03g27980|LOC_Os03g27970-LOC_Os03g27980|intergenic_region|LOC_Os03g27970-LOC_Os03g27980|||n.16070188A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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711 3 16072044 SNP-3.16070690. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27980|LOC_Os03g27980|transcript|LOC_Os03g27980.1|protein_coding|1/1|c.1040C>A|p.Arg347His|1040/1776|1040/1479|347/492||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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712 3 16074898 SNP-3.16073544. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g27990|LOC_Os03g27990|transcript|LOC_Os03g27990.1|protein_coding|11/15|c.1423-152T>C|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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713 3 16075626 SNP-3.16074272. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g27990|LOC_Os03g27990|transcript|LOC_Os03g27990.1|protein_coding|10/16|c.1061G>T|p.His354Leu|1315/2813|1061/2262|354/753||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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714 3 16075691 SNP-3.16074337. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27990|LOC_Os03g27990|transcript|LOC_Os03g27990.1|protein_coding|10/16|c.996T>C|p.Ser332Ser|1250/2813|996/2262|332/753|| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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715 3 16076230 SNP-3.16074876. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g27990|LOC_Os03g27990|transcript|LOC_Os03g27990.1|protein_coding|9/16|c.732T>C|p.Asp244Asp|986/2813|732/2262|244/753|| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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716 3 16076306 SNP-3.16074952. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g27990|LOC_Os03g27990|transcript|LOC_Os03g27990.1|protein_coding|8/15|c.693-37G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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717 3 16078859 SNP-3.16077505. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g27990|LOC_Os03g27990|transcript|LOC_Os03g27990.1|protein_coding|1/16|c.-216T>C|||||216|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
diff
changeset
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718 3 16080275 SNP-3.16078921. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16080275A>G|||||| GT 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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719 3 16081791 SNP-3.16080437. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16081791C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/1 0/1 ./. 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/1 0/1 0/1 0/0 ./. 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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720 3 16081893 SNP-3.16080539. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16081893C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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721 3 16082458 SNP-3.16081104. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16082458A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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722 3 16084305 SNP-3.16082951. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16084305C>A|||||| GT ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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723 3 16085089 SNP-3.16083735. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16085089C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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724 3 16085268 SNP-3.16083914. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16085268A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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725 3 16085337 SNP-3.16083983. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16085337A>G|||||| GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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726 3 16086121 SNP-3.16084767. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16086121A>G|||||| GT 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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727 3 16087398 SNP-3.16086044. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g27990-LOC_Os03g28000|LOC_Os03g27990-LOC_Os03g28000|intergenic_region|LOC_Os03g27990-LOC_Os03g28000|||n.16087398A>G|||||| GT 0/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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728 3 16088494 SNP-3.16087140. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28000-LOC_Os03g28010|LOC_Os03g28000-LOC_Os03g28010|intergenic_region|LOC_Os03g28000-LOC_Os03g28010|||n.16088494A>G|||||| GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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729 3 16092466 SNP-3.16091112. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28000-LOC_Os03g28010|LOC_Os03g28000-LOC_Os03g28010|intergenic_region|LOC_Os03g28000-LOC_Os03g28010|||n.16092466A>G|||||| GT 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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730 3 16097968 SNP-3.16096614. A G . . PR;ANN=G|stop_gained|HIGH|LOC_Os03g28010|LOC_Os03g28010|transcript|LOC_Os03g28010.1|protein_coding|6/11|c.2226A>G|p.Tyr742*|2226/5928|2226/5928|742/1975||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g28010|LOC_Os03g28010|1|1.00);NMD=(LOC_Os03g28010|LOC_Os03g28010|1|1.00) GT 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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731 3 16099002 SNP-3.16097648. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28010|LOC_Os03g28010|transcript|LOC_Os03g28010.1|protein_coding|8/11|c.2961A>G|p.Phe987Leu|2961/5928|2961/5928|987/1975||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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732 3 16100900 SNP-3.16099546. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28010|LOC_Os03g28010|transcript|LOC_Os03g28010.1|protein_coding|10/10|c.3907-279C>A|||||| GT 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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733 3 16102230 SNP-3.16100876. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28010|LOC_Os03g28010|transcript|LOC_Os03g28010.1|protein_coding|11/11|c.4958A>G|p.Val1653Gly|4958/5928|4958/5928|1653/1975||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 |
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734 3 16109853 SNP-3.16108499. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28020-LOC_Os03g28030|LOC_Os03g28020-LOC_Os03g28030|intergenic_region|LOC_Os03g28020-LOC_Os03g28030|||n.16109853C>A|||||| GT 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 ./. 0/0 0/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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735 3 16110799 SNP-3.16109445. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28020-LOC_Os03g28030|LOC_Os03g28020-LOC_Os03g28030|intergenic_region|LOC_Os03g28020-LOC_Os03g28030|||n.16110799A>G|||||| GT 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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736 3 16111699 SNP-3.16110345. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28020-LOC_Os03g28030|LOC_Os03g28020-LOC_Os03g28030|intergenic_region|LOC_Os03g28020-LOC_Os03g28030|||n.16111699A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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737 3 16112054 SNP-3.16110700. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28020-LOC_Os03g28030|LOC_Os03g28020-LOC_Os03g28030|intergenic_region|LOC_Os03g28020-LOC_Os03g28030|||n.16112054C>A|||||| GT 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 ./. 1/1 ./. 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 |
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738 3 16115076 SNP-3.16113722. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28030|LOC_Os03g28030|transcript|LOC_Os03g28030.1|protein_coding|1/3|c.98T>C|p.Gly33Ala|98/468|98/468|33/155||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 |
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739 3 16116032 SNP-3.16114678. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28030-LOC_Os03g28040|LOC_Os03g28030-LOC_Os03g28040|intergenic_region|LOC_Os03g28030-LOC_Os03g28040|||n.16116032A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. |
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740 3 16116761 SNP-3.16115407. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28030-LOC_Os03g28040|LOC_Os03g28030-LOC_Os03g28040|intergenic_region|LOC_Os03g28030-LOC_Os03g28040|||n.16116761A>G|||||| GT 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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741 3 16117174 SNP-3.16115820. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28030-LOC_Os03g28040|LOC_Os03g28030-LOC_Os03g28040|intergenic_region|LOC_Os03g28030-LOC_Os03g28040|||n.16117174A>G|||||| GT ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 |
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742 3 16118924 SNP-3.16117570. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28040-LOC_Os03g28050|LOC_Os03g28040-LOC_Os03g28050|intergenic_region|LOC_Os03g28040-LOC_Os03g28050|||n.16118924A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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743 3 16121614 SNP-3.16120260. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28040-LOC_Os03g28050|LOC_Os03g28040-LOC_Os03g28050|intergenic_region|LOC_Os03g28040-LOC_Os03g28050|||n.16121614C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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744 3 16123637 SNP-3.16122283. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28050-LOC_Os03g28060|LOC_Os03g28050-LOC_Os03g28060|intergenic_region|LOC_Os03g28050-LOC_Os03g28060|||n.16123637A>G|||||| GT ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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745 3 16124670 SNP-3.16123316. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28050-LOC_Os03g28060|LOC_Os03g28050-LOC_Os03g28060|intergenic_region|LOC_Os03g28050-LOC_Os03g28060|||n.16124670A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/1 0/1 ./. ./. ./. 0/1 0/0 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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746 3 16126350 SNP-3.16124996. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28050-LOC_Os03g28060|LOC_Os03g28050-LOC_Os03g28060|intergenic_region|LOC_Os03g28050-LOC_Os03g28060|||n.16126350C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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747 3 16127787 SNP-3.16126433. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28050-LOC_Os03g28060|LOC_Os03g28050-LOC_Os03g28060|intergenic_region|LOC_Os03g28050-LOC_Os03g28060|||n.16127787A>G|||||| GT 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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748 3 16128346 SNP-3.16126992. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28050-LOC_Os03g28060|LOC_Os03g28050-LOC_Os03g28060|intergenic_region|LOC_Os03g28050-LOC_Os03g28060|||n.16128346C>A|||||| GT 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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749 3 16131077 SNP-3.16129723. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28060|LOC_Os03g28060|transcript|LOC_Os03g28060.1|protein_coding|2/6|c.487A>G|p.Ala163Ala|487/2295|487/2295|163/764||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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750 3 16132391 SNP-3.16131037. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28060|LOC_Os03g28060|transcript|LOC_Os03g28060.1|protein_coding|5/6|c.1471A>G|p.Ala491Ala|1471/2295|1471/2295|491/764||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/1 0/0 0/1 0/0 1/1 ./. ./. 1/1 0/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/1 0/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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751 3 16133002 SNP-3.16131648. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28060|LOC_Os03g28060|transcript|LOC_Os03g28060.1|protein_coding|6/6|c.2001A>G|p.Gln667Gln|2001/2295|2001/2295|667/764||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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752 3 16135246 SNP-3.16133892. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28070-LOC_Os03g28080|LOC_Os03g28070-LOC_Os03g28080|intergenic_region|LOC_Os03g28070-LOC_Os03g28080|||n.16135246A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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753 3 16135358 SNP-3.16134004. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28070-LOC_Os03g28080|LOC_Os03g28070-LOC_Os03g28080|intergenic_region|LOC_Os03g28070-LOC_Os03g28080|||n.16135358A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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754 3 16139308 SNP-3.16137954. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28080-LOC_Os03g28090|LOC_Os03g28080-LOC_Os03g28090|intergenic_region|LOC_Os03g28080-LOC_Os03g28090|||n.16139308C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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755 3 16140836 SNP-3.16139482. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28080-LOC_Os03g28090|LOC_Os03g28080-LOC_Os03g28090|intergenic_region|LOC_Os03g28080-LOC_Os03g28090|||n.16140836A>G|||||| GT 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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756 3 16142450 SNP-3.16141096. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28080-LOC_Os03g28090|LOC_Os03g28080-LOC_Os03g28090|intergenic_region|LOC_Os03g28080-LOC_Os03g28090|||n.16142450A>G|||||| GT 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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757 3 16142960 SNP-3.16141606. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28080-LOC_Os03g28090|LOC_Os03g28080-LOC_Os03g28090|intergenic_region|LOC_Os03g28080-LOC_Os03g28090|||n.16142960C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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758 3 16146021 SNP-3.16144667. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28080-LOC_Os03g28090|LOC_Os03g28080-LOC_Os03g28090|intergenic_region|LOC_Os03g28080-LOC_Os03g28090|||n.16146021A>G|||||| GT 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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759 3 16147747 SNP-3.16146393. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28080-LOC_Os03g28090|LOC_Os03g28080-LOC_Os03g28090|intergenic_region|LOC_Os03g28080-LOC_Os03g28090|||n.16147747C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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760 3 16147908 SNP-3.16146554. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28080-LOC_Os03g28090|LOC_Os03g28080-LOC_Os03g28090|intergenic_region|LOC_Os03g28080-LOC_Os03g28090|||n.16147908C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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761 3 16149035 SNP-3.16147681. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28080-LOC_Os03g28090|LOC_Os03g28080-LOC_Os03g28090|intergenic_region|LOC_Os03g28080-LOC_Os03g28090|||n.16149035A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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762 3 16150473 SNP-3.16149119. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28080-LOC_Os03g28090|LOC_Os03g28080-LOC_Os03g28090|intergenic_region|LOC_Os03g28080-LOC_Os03g28090|||n.16150473A>G|||||| GT 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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763 3 16155821 SNP-3.16154467. A G . . PR;ANN=G|splice_donor_variant&intron_variant|HIGH|LOC_Os03g28100|LOC_Os03g28100|transcript|LOC_Os03g28100.1|protein_coding|1/1|c.59+1T>C||||||;LOF=(LOC_Os03g28100|LOC_Os03g28100|1|1.00) GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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764 3 16156517 SNP-3.16155163. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28100-LOC_Os03g28110|LOC_Os03g28100-LOC_Os03g28110|intergenic_region|LOC_Os03g28100-LOC_Os03g28110|||n.16156517A>G|||||| GT 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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765 3 16158960 SNP-3.16157606. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28110|LOC_Os03g28110|transcript|LOC_Os03g28110.1|protein_coding|4/4|c.3819T>C|p.Arg1273Arg|3819/3912|3819/3912|1273/1303|| GT 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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766 3 16158961 SNP-3.16157607. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28110|LOC_Os03g28110|transcript|LOC_Os03g28110.1|protein_coding|4/4|c.3818T>C|p.Arg1273Pro|3818/3912|3818/3912|1273/1303||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 1/1 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 0/1 ./. 0/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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767 3 16159744 SNP-3.16158390. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28110|LOC_Os03g28110|transcript|LOC_Os03g28110.1|protein_coding|3/4|c.3095G>T|p.Asn1032Ile|3095/3912|3095/3912|1032/1303||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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768 3 16159923 SNP-3.16158569. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28110|LOC_Os03g28110|transcript|LOC_Os03g28110.1|protein_coding|3/4|c.2916T>C|p.Asp972Asp|2916/3912|2916/3912|972/1303||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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769 3 16163231 SNP-3.16161877. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28110-LOC_Os03g28120|LOC_Os03g28110-LOC_Os03g28120|intergenic_region|LOC_Os03g28110-LOC_Os03g28120|||n.16163231A>G|||||| GT ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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770 3 16163777 SNP-3.16162423. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28110-LOC_Os03g28120|LOC_Os03g28110-LOC_Os03g28120|intergenic_region|LOC_Os03g28110-LOC_Os03g28120|||n.16163777A>G|||||| GT ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/1 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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771 3 16164237 SNP-3.16162883. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28120|LOC_Os03g28120|transcript|LOC_Os03g28120.1|protein_coding|2/2|c.234-11G>T|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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772 3 16167564 SNP-3.16166210. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28120-LOC_Os03g28130|LOC_Os03g28120-LOC_Os03g28130|intergenic_region|LOC_Os03g28120-LOC_Os03g28130|||n.16167564C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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773 3 16167942 SNP-3.16166588. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28120-LOC_Os03g28130|LOC_Os03g28120-LOC_Os03g28130|intergenic_region|LOC_Os03g28120-LOC_Os03g28130|||n.16167942A>G|||||| GT ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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774 3 16168255 SNP-3.16166901. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28120-LOC_Os03g28130|LOC_Os03g28120-LOC_Os03g28130|intergenic_region|LOC_Os03g28120-LOC_Os03g28130|||n.16168255A>G|||||| GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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775 3 16169101 SNP-3.16167747. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28120-LOC_Os03g28130|LOC_Os03g28120-LOC_Os03g28130|intergenic_region|LOC_Os03g28120-LOC_Os03g28130|||n.16169101A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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776 3 16173019 SNP-3.16171665. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28130-LOC_Os03g28140|LOC_Os03g28130-LOC_Os03g28140|intergenic_region|LOC_Os03g28130-LOC_Os03g28140|||n.16173019C>A|||||| GT 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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777 3 16173556 SNP-3.16172202. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28130-LOC_Os03g28140|LOC_Os03g28130-LOC_Os03g28140|intergenic_region|LOC_Os03g28130-LOC_Os03g28140|||n.16173556C>A|||||| GT 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/1 0/0 ./. ./. ./. ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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778 3 16173793 SNP-3.16172439. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28130-LOC_Os03g28140|LOC_Os03g28130-LOC_Os03g28140|intergenic_region|LOC_Os03g28130-LOC_Os03g28140|||n.16173793C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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779 3 16175848 SNP-3.16174494. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28130-LOC_Os03g28140|LOC_Os03g28130-LOC_Os03g28140|intergenic_region|LOC_Os03g28130-LOC_Os03g28140|||n.16175848C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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780 3 16177665 SNP-3.16176311. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28130-LOC_Os03g28140|LOC_Os03g28130-LOC_Os03g28140|intergenic_region|LOC_Os03g28130-LOC_Os03g28140|||n.16177665C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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781 3 16178411 SNP-3.16177057. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28130-LOC_Os03g28140|LOC_Os03g28130-LOC_Os03g28140|intergenic_region|LOC_Os03g28130-LOC_Os03g28140|||n.16178411C>A|||||| GT 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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782 3 16180766 SNP-3.16179412. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28130-LOC_Os03g28140|LOC_Os03g28130-LOC_Os03g28140|intergenic_region|LOC_Os03g28130-LOC_Os03g28140|||n.16180766C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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783 3 16184927 SNP-3.16183573. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28140|LOC_Os03g28140|transcript|LOC_Os03g28140.1|protein_coding|9/11|c.4749G>T|p.Asp1583Asp|4749/5457|4749/5457|1583/1818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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784 3 16185673 SNP-3.16184319. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28140|LOC_Os03g28140|transcript|LOC_Os03g28140.1|protein_coding|9/11|c.4003T>C|p.Ala1335Pro|4003/5457|4003/5457|1335/1818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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785 3 16186851 SNP-3.16185497. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28140|LOC_Os03g28140|transcript|LOC_Os03g28140.1|protein_coding|8/10|c.3408+265T>C|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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786 3 16188584 SNP-3.16187230. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28140|LOC_Os03g28140|transcript|LOC_Os03g28140.1|protein_coding|5/11|c.2318T>C|p.His773Pro|2318/5457|2318/5457|773/1818||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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787 3 16190367 SNP-3.16189013. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28140|LOC_Os03g28140|transcript|LOC_Os03g28140.1|protein_coding|4/11|c.1707G>T|p.Pro569Pro|1707/5457|1707/5457|569/1818|| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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788 3 16195500 SNP-3.16194146. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16195500C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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789 3 16196752 SNP-3.16195398. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16196752C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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790 3 16196939 SNP-3.16195585. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16196939C>A|||||| GT ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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791 3 16197579 SNP-3.16196225. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16197579C>A|||||| GT 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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792 3 16197647 SNP-3.16196293. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16197647C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 0/1 ./. ./. 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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793 3 16199091 SNP-3.16197737. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16199091A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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794 3 16202379 SNP-3.16201026. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16202379C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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795 3 16202825 SNP-3.16201472. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16202825A>G|||||| GT ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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796 3 16203548 SNP-3.16202195. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16203548A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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797 3 16204694 SNP-3.16203341. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16204694C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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798 3 16204817 SNP-3.16203464. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16204817C>A|||||| GT 0/0 0/1 0/0 ./. ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/1 1/1 ./. ./. 0/0 0/1 ./. 0/1 ./. 0/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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799 3 16205976 SNP-3.16204623. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16205976A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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800 3 16207401 SNP-3.16206048. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16207401C>A|||||| GT 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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801 3 16208608 SNP-3.16207255. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28140-LOC_Os03g28160|LOC_Os03g28140-LOC_Os03g28160|intergenic_region|LOC_Os03g28140-LOC_Os03g28160|||n.16208608A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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802 3 16210681 SNP-3.16209328. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28160-LOC_Os03g28170|LOC_Os03g28160-LOC_Os03g28170|intergenic_region|LOC_Os03g28160-LOC_Os03g28170|||n.16210681A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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803 3 16211192 SNP-3.16209839. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28160-LOC_Os03g28170|LOC_Os03g28160-LOC_Os03g28170|intergenic_region|LOC_Os03g28160-LOC_Os03g28170|||n.16211192C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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804 3 16211757 SNP-3.16210404. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28160-LOC_Os03g28170|LOC_Os03g28160-LOC_Os03g28170|intergenic_region|LOC_Os03g28160-LOC_Os03g28170|||n.16211757A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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805 3 16212460 SNP-3.16211107. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28160-LOC_Os03g28170|LOC_Os03g28160-LOC_Os03g28170|intergenic_region|LOC_Os03g28160-LOC_Os03g28170|||n.16212460C>A|||||| GT 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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806 3 16212633 SNP-3.16211280. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28160-LOC_Os03g28170|LOC_Os03g28160-LOC_Os03g28170|intergenic_region|LOC_Os03g28160-LOC_Os03g28170|||n.16212633A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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807 3 16214847 SNP-3.16213494. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28170|LOC_Os03g28170|transcript|LOC_Os03g28170.1|protein_coding|2/2|c.209+12A>G|||||| GT 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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808 3 16216727 SNP-3.16215374. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28170-LOC_Os03g28175|LOC_Os03g28170-LOC_Os03g28175|intergenic_region|LOC_Os03g28170-LOC_Os03g28175|||n.16216727A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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809 3 16216860 SNP-3.16215507. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28170-LOC_Os03g28175|LOC_Os03g28170-LOC_Os03g28175|intergenic_region|LOC_Os03g28170-LOC_Os03g28175|||n.16216860A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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810 3 16221494 SNP-3.16220141. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28180|LOC_Os03g28180|transcript|LOC_Os03g28180.1|protein_coding|1/3|c.216-181T>C|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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811 3 16221513 SNP-3.16220160. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28180|LOC_Os03g28180|transcript|LOC_Os03g28180.1|protein_coding|1/3|c.216-200T>C|||||| GT 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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812 3 16222648 SNP-3.16221295. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28180-LOC_Os03g28190|LOC_Os03g28180-LOC_Os03g28190|intergenic_region|LOC_Os03g28180-LOC_Os03g28190|||n.16222648A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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813 3 16225523 SNP-3.16224170. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28180-LOC_Os03g28190|LOC_Os03g28180-LOC_Os03g28190|intergenic_region|LOC_Os03g28180-LOC_Os03g28190|||n.16225523A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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814 3 16227575 SNP-3.16226222. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28180-LOC_Os03g28190|LOC_Os03g28180-LOC_Os03g28190|intergenic_region|LOC_Os03g28180-LOC_Os03g28190|||n.16227575A>G|||||| GT 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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815 3 16228073 SNP-3.16226720. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28190|LOC_Os03g28190|transcript|LOC_Os03g28190.1|protein_coding|1/1|c.118T>C|p.Ala40Pro|118/534|118/534|40/177||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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816 3 16241227 SNP-3.16239874. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28230|LOC_Os03g28230|transcript|LOC_Os03g28230.1|protein_coding|2/4|c.345G>T|p.Thr115Thr|345/882|345/882|115/293||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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817 3 16244812 SNP-3.16243459. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28230-LOC_Os03g28250|LOC_Os03g28230-LOC_Os03g28250|intergenic_region|LOC_Os03g28230-LOC_Os03g28250|||n.16244812C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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818 3 16246646 SNP-3.16245293. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28230-LOC_Os03g28250|LOC_Os03g28230-LOC_Os03g28250|intergenic_region|LOC_Os03g28230-LOC_Os03g28250|||n.16246646C>A|||||| GT 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 |
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819 3 16248317 SNP-3.16246964. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28250-LOC_Os03g28260|LOC_Os03g28250-LOC_Os03g28260|intergenic_region|LOC_Os03g28250-LOC_Os03g28260|||n.16248317A>G|||||| GT 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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820 3 16248339 SNP-3.16246986. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28250-LOC_Os03g28260|LOC_Os03g28250-LOC_Os03g28260|intergenic_region|LOC_Os03g28250-LOC_Os03g28260|||n.16248339A>G|||||| GT 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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821 3 16249091 SNP-3.16247738. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28250-LOC_Os03g28260|LOC_Os03g28250-LOC_Os03g28260|intergenic_region|LOC_Os03g28250-LOC_Os03g28260|||n.16249091A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 |
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822 3 16249376 SNP-3.16248023. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28250-LOC_Os03g28260|LOC_Os03g28250-LOC_Os03g28260|intergenic_region|LOC_Os03g28250-LOC_Os03g28260|||n.16249376A>G|||||| GT ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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823 3 16249805 SNP-3.16248452. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28250-LOC_Os03g28260|LOC_Os03g28250-LOC_Os03g28260|intergenic_region|LOC_Os03g28250-LOC_Os03g28260|||n.16249805A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 ./. 1/1 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 |
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824 3 16249928 SNP-3.16248575. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28250-LOC_Os03g28260|LOC_Os03g28250-LOC_Os03g28260|intergenic_region|LOC_Os03g28250-LOC_Os03g28260|||n.16249928C>A|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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825 3 16250175 SNP-3.16248822. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28250-LOC_Os03g28260|LOC_Os03g28250-LOC_Os03g28260|intergenic_region|LOC_Os03g28250-LOC_Os03g28260|||n.16250175A>G|||||| GT 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. |
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826 3 16250281 SNP-3.16248928. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28250-LOC_Os03g28260|LOC_Os03g28250-LOC_Os03g28260|intergenic_region|LOC_Os03g28250-LOC_Os03g28260|||n.16250281C>A|||||| GT ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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827 3 16251439 SNP-3.16250086. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28260|LOC_Os03g28260|transcript|LOC_Os03g28260.1|protein_coding|1/2|c.196-443T>C|||||| GT 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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828 3 16252381 SNP-3.16251028. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28260|LOC_Os03g28260|transcript|LOC_Os03g28260.1|protein_coding|1/2|c.195+142G>T|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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829 3 16253135 SNP-3.16251782. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28260-LOC_Os03g28270|LOC_Os03g28260-LOC_Os03g28270|intergenic_region|LOC_Os03g28260-LOC_Os03g28270|||n.16253135C>A|||||| GT 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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830 3 16255263 SNP-3.16253910. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28260-LOC_Os03g28270|LOC_Os03g28260-LOC_Os03g28270|intergenic_region|LOC_Os03g28260-LOC_Os03g28270|||n.16255263A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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831 3 16257142 SNP-3.16255789. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|10/10|c.*104T>C|||||104|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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832 3 16258144 SNP-3.16256791. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|8/10|c.3820G>T|p.Arg1274Cys|3868/4432|3820/4275|1274/1424||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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833 3 16258485 SNP-3.16257132. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|7/9|c.3708+199G>T|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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834 3 16258806 SNP-3.16257453. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|6/9|c.3607-21T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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835 3 16258883 SNP-3.16257530. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|6/9|c.3607-98T>C|||||| GT 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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836 3 16259008 SNP-3.16257655. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|6/10|c.3589T>C|p.Arg1197Arg|3637/4432|3589/4275|1197/1424||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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837 3 16260428 SNP-3.16259075. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|5/10|c.3095T>C|p.Tyr1032Ser|3143/4432|3095/4275|1032/1424||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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838 3 16260660 SNP-3.16259307. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|5/10|c.2863T>C|p.Ala955Pro|2911/4432|2863/4275|955/1424||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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839 3 16263079 SNP-3.16261725. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|2/10|c.2051T>C|p.Arg684Pro|2099/4432|2051/4275|684/1424||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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840 3 16264069 SNP-3.16262715. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28270|LOC_Os03g28270|transcript|LOC_Os03g28270.1|protein_coding|2/10|c.1061G>T|p.Glu354Val|1109/4432|1061/4275|354/1424||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. ./. ./. 0/0 0/1 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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841 3 16266636 SNP-3.16265282. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28270-LOC_Os03g28280|LOC_Os03g28270-LOC_Os03g28280|intergenic_region|LOC_Os03g28270-LOC_Os03g28280|||n.16266636C>A|||||| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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842 3 16268544 SNP-3.16267190. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28270-LOC_Os03g28280|LOC_Os03g28270-LOC_Os03g28280|intergenic_region|LOC_Os03g28270-LOC_Os03g28280|||n.16268544C>A|||||| GT 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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843 3 16269971 SNP-3.16268617. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28280|LOC_Os03g28280|transcript|LOC_Os03g28280.1|protein_coding|2/2|c.313A>G|p.Gln105Glu|313/435|313/435|105/144||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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844 3 16270468 SNP-3.16269114. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28280-LOC_Os03g28289|LOC_Os03g28280-LOC_Os03g28289|intergenic_region|LOC_Os03g28280-LOC_Os03g28289|||n.16270468A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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845 3 16271615 SNP-3.16270261. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28280-LOC_Os03g28289|LOC_Os03g28280-LOC_Os03g28289|intergenic_region|LOC_Os03g28280-LOC_Os03g28289|||n.16271615C>A|||||| GT 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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846 3 16275105 SNP-3.16273751. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28280-LOC_Os03g28289|LOC_Os03g28280-LOC_Os03g28289|intergenic_region|LOC_Os03g28280-LOC_Os03g28289|||n.16275105C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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847 3 16275267 SNP-3.16273913. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28280-LOC_Os03g28289|LOC_Os03g28280-LOC_Os03g28289|intergenic_region|LOC_Os03g28280-LOC_Os03g28289|||n.16275267C>A|||||| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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848 3 16276606 SNP-3.16275252. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28280-LOC_Os03g28289|LOC_Os03g28280-LOC_Os03g28289|intergenic_region|LOC_Os03g28280-LOC_Os03g28289|||n.16276606C>A|||||| GT 1/1 ./. 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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849 3 16277496 SNP-3.16276142. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28280-LOC_Os03g28289|LOC_Os03g28280-LOC_Os03g28289|intergenic_region|LOC_Os03g28280-LOC_Os03g28289|||n.16277496A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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850 3 16278608 SNP-3.16277254. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28280-LOC_Os03g28289|LOC_Os03g28280-LOC_Os03g28289|intergenic_region|LOC_Os03g28280-LOC_Os03g28289|||n.16278608C>A|||||| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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851 3 16279097 SNP-3.16277743. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28280-LOC_Os03g28289|LOC_Os03g28280-LOC_Os03g28289|intergenic_region|LOC_Os03g28280-LOC_Os03g28289|||n.16279097A>G|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
852 3 16279194 SNP-3.16277840. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28280-LOC_Os03g28289|LOC_Os03g28280-LOC_Os03g28289|intergenic_region|LOC_Os03g28280-LOC_Os03g28289|||n.16279194A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
853 3 16283872 SNP-3.16282518. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.1|protein_coding|2/8|c.574A>G|p.Ser192Ala|970/3250|574/2580|192/859||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.2|protein_coding|1/6|c.574A>G|p.Ser192Ala|1091/3806|574/1908|192/635||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/1 ./. 0/1 1/1 0/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
854 3 16283978 SNP-3.16282624. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.1|protein_coding|2/8|c.680C>A|p.Ile227Asn|1076/3250|680/2580|227/859||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.2|protein_coding|1/6|c.680C>A|p.Ile227Asn|1197/3806|680/1908|227/635||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
855 3 16284368 SNP-3.16283014. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.1|protein_coding|2/8|c.1070C>A|p.His357His|1466/3250|1070/2580|357/859||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.2|protein_coding|1/6|c.1070C>A|p.His357His|1587/3806|1070/1908|357/635||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
856 3 16284457 SNP-3.16283103. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.1|protein_coding|2/8|c.1159A>G|p.Leu387Val|1555/3250|1159/2580|387/859||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.2|protein_coding|1/6|c.1159A>G|p.Leu387Val|1676/3806|1159/1908|387/635||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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857 3 16289377 SNP-3.16288023. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.1|protein_coding|7/7|c.2399-650C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g28300|LOC_Os03g28300|transcript|LOC_Os03g28300.2|protein_coding|5/5|c.*926-650C>A|||||| GT ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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858 3 16293444 SNP-3.16292090. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28300-LOC_Os03g28310|LOC_Os03g28300-LOC_Os03g28310|intergenic_region|LOC_Os03g28300-LOC_Os03g28310|||n.16293444C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
859 3 16294316 SNP-3.16292962. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28310|LOC_Os03g28310|transcript|LOC_Os03g28310.1|protein_coding|2/2|c.2015G>T|p.Ala672Val|2397/3068|2015/2247|672/748||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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860 3 16296108 SNP-3.16294754. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28310|LOC_Os03g28310|transcript|LOC_Os03g28310.1|protein_coding|2/2|c.223G>T|p.Ser75Ser|605/3068|223/2247|75/748||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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861 3 16297362 SNP-3.16296008. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28310-LOC_Os03g28330|LOC_Os03g28310-LOC_Os03g28330|intergenic_region|LOC_Os03g28310-LOC_Os03g28330|||n.16297362C>A|||||| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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862 3 16298293 SNP-3.16296939. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28310-LOC_Os03g28330|LOC_Os03g28310-LOC_Os03g28330|intergenic_region|LOC_Os03g28310-LOC_Os03g28330|||n.16298293A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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863 3 16300464 SNP-3.16299110. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28310-LOC_Os03g28330|LOC_Os03g28310-LOC_Os03g28330|intergenic_region|LOC_Os03g28310-LOC_Os03g28330|||n.16300464C>A|||||| GT 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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864 3 16301802 SNP-3.16300448. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.1|protein_coding|15/15|c.2352G>T|p.Arg784Arg|2482/3007|2352/2451|784/816||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.4|protein_coding|14/14|c.2352G>T|p.Arg784Arg|2438/2963|2352/2451|784/816||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.3|protein_coding|15/15|c.2352G>T|p.Arg784Arg|2621/3146|2352/2451|784/816||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.2|protein_coding|15/15|c.2352G>T|p.Arg784Arg|2670/3195|2352/2451|784/816||WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.5|protein_coding|13/13|c.*832G>T|||||926|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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865 3 16305363 SNP-3.16304009. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.1|protein_coding|2/14|c.111-144G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.4|protein_coding|1/13|c.111-144G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.3|protein_coding|2/14|c.111-144G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.2|protein_coding|2/14|c.111-144G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.5|protein_coding|2/12|c.111-144G>T|||||| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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866 3 16305784 SNP-3.16304430. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.1|protein_coding|2/14|c.110+164T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.4|protein_coding|1/13|c.110+164T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.3|protein_coding|2/14|c.110+164T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.2|protein_coding|2/14|c.110+164T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.5|protein_coding|2/12|c.110+164T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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867 3 16306048 SNP-3.16304694. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.1|protein_coding|2/15|c.10G>T|p.Ala4Ser|140/3007|10/2451|4/816||,A|missense_variant|MODERATE|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.4|protein_coding|1/14|c.10G>T|p.Ala4Ser|96/2963|10/2451|4/816||,A|missense_variant|MODERATE|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.3|protein_coding|2/15|c.10G>T|p.Ala4Ser|279/3146|10/2451|4/816||,A|missense_variant|MODERATE|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.2|protein_coding|2/15|c.10G>T|p.Ala4Ser|328/3195|10/2451|4/816||,A|missense_variant|MODERATE|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.5|protein_coding|2/13|c.10G>T|p.Ala4Ser|140/3191|10/1704|4/567|| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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868 3 16307341 SNP-3.16305987. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.1|protein_coding|1/14|c.-31+192G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g28330|LOC_Os03g28330|transcript|LOC_Os03g28330.5|protein_coding|1/12|c.-31+192G>T|||||| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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869 3 16307741 SNP-3.16306387. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16307741A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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870 3 16308213 SNP-3.16306859. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16308213A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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871 3 16308525 SNP-3.16307171. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16308525C>A|||||| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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872 3 16309467 SNP-3.16308113. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16309467C>A|||||| GT 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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873 3 16310777 SNP-3.16309423. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16310777A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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874 3 16310932 SNP-3.16309578. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16310932A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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875 3 16314149 SNP-3.16312795. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16314149C>A|||||| GT ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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876 3 16315527 SNP-3.16314173. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16315527C>A|||||| GT 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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877 3 16317559 SNP-3.16316205. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16317559C>A|||||| GT 1/1 ./. 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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878 3 16321861 SNP-3.16320507. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16321861C>A|||||| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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879 3 16322325 SNP-3.16320971. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16322325C>A|||||| GT 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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880 3 16324424 SNP-3.16323070. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16324424A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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881 3 16325371 SNP-3.16324017. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16325371A>G|||||| GT 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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882 3 16326374 SNP-3.16325020. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16326374C>A|||||| GT ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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883 3 16330389 SNP-3.16329035. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28330-LOC_Os03g28350|LOC_Os03g28330-LOC_Os03g28350|intergenic_region|LOC_Os03g28330-LOC_Os03g28350|||n.16330389A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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884 3 16331393 SNP-3.16330039. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28350|LOC_Os03g28350|transcript|LOC_Os03g28350.1|protein_coding|1/1|c.119A>G|p.Arg40Arg|119/801|119/801|40/266||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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885 3 16331681 SNP-3.16330327. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28350|LOC_Os03g28350|transcript|LOC_Os03g28350.1|protein_coding|1/1|c.407A>G|p.Thr136Arg|407/801|407/801|136/266||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 0/1 ./. 0/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 0/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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886 3 16331717 SNP-3.16330363. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28350|LOC_Os03g28350|transcript|LOC_Os03g28350.1|protein_coding|1/1|c.443C>A|p.Tyr148Tyr|443/801|443/801|148/266||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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887 3 16333225 SNP-3.16331871. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28350-LOC_Os03g28360|LOC_Os03g28350-LOC_Os03g28360|intergenic_region|LOC_Os03g28350-LOC_Os03g28360|||n.16333225C>A|||||| GT 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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888 3 16333844 SNP-3.16332490. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28350-LOC_Os03g28360|LOC_Os03g28350-LOC_Os03g28360|intergenic_region|LOC_Os03g28350-LOC_Os03g28360|||n.16333844A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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889 3 16334375 SNP-3.16333021. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28360|LOC_Os03g28360|transcript|LOC_Os03g28360.1|protein_coding|4/4|c.927T>C|p.Val309Val|927/1059|927/1059|309/352||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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890 3 16334945 SNP-3.16333591. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28360|LOC_Os03g28360|transcript|LOC_Os03g28360.1|protein_coding|3/4|c.609G>T|p.Leu203Phe|609/1059|609/1059|203/352||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/1 ./. ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. ./. ./. 0/0 ./. 1/1 ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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891 3 16338196 SNP-3.16336842. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28360|LOC_Os03g28360|transcript|LOC_Os03g28360.1|protein_coding|1/3|c.161+238G>T|||||| GT ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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892 3 16339322 SNP-3.16337968. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28360-LOC_Os03g28370|LOC_Os03g28360-LOC_Os03g28370|intergenic_region|LOC_Os03g28360-LOC_Os03g28370|||n.16339322C>A|||||| GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/1 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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893 3 16340091 SNP-3.16338737. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28360-LOC_Os03g28370|LOC_Os03g28360-LOC_Os03g28370|intergenic_region|LOC_Os03g28360-LOC_Os03g28370|||n.16340091A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 ./. 0/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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894 3 16340649 SNP-3.16339295. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28360-LOC_Os03g28370|LOC_Os03g28360-LOC_Os03g28370|intergenic_region|LOC_Os03g28360-LOC_Os03g28370|||n.16340649A>G|||||| GT ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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895 3 16341869 SNP-3.16340515. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28360-LOC_Os03g28370|LOC_Os03g28360-LOC_Os03g28370|intergenic_region|LOC_Os03g28360-LOC_Os03g28370|||n.16341869C>A|||||| GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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896 3 16342531 SNP-3.16341177. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28360-LOC_Os03g28370|LOC_Os03g28360-LOC_Os03g28370|intergenic_region|LOC_Os03g28360-LOC_Os03g28370|||n.16342531A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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897 3 16342579 SNP-3.16341225. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28360-LOC_Os03g28370|LOC_Os03g28360-LOC_Os03g28370|intergenic_region|LOC_Os03g28360-LOC_Os03g28370|||n.16342579A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/1 ./. 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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898 3 16342932 SNP-3.16341578. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28360-LOC_Os03g28370|LOC_Os03g28360-LOC_Os03g28370|intergenic_region|LOC_Os03g28360-LOC_Os03g28370|||n.16342932C>A|||||| GT 1/1 ./. 0/0 0/1 ./. 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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899 3 16345758 SNP-3.16344404. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28360-LOC_Os03g28370|LOC_Os03g28360-LOC_Os03g28370|intergenic_region|LOC_Os03g28360-LOC_Os03g28370|||n.16345758C>A|||||| GT ./. ./. 0/0 1/1 ./. 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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900 3 16346000 SNP-3.16344646. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28360-LOC_Os03g28370|LOC_Os03g28360-LOC_Os03g28370|intergenic_region|LOC_Os03g28360-LOC_Os03g28370|||n.16346000A>G|||||| GT 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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901 3 16349441 SNP-3.16348087. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28370|LOC_Os03g28370|transcript|LOC_Os03g28370.1|protein_coding|3/8|c.2546A>G|p.Gly849Gly|2546/3828|2546/3828|849/1275||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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902 3 16352546 SNP-3.16351192. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28370-LOC_Os03g28380|LOC_Os03g28370-LOC_Os03g28380|intergenic_region|LOC_Os03g28370-LOC_Os03g28380|||n.16352546C>A|||||| GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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903 3 16353769 SNP-3.16352415. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g28380|LOC_Os03g28380|transcript|LOC_Os03g28380.1|protein_coding|3/4|c.1531G>T|p.Lys511*|1531/2115|1531/2115|511/704||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g28380|LOC_Os03g28380|1|1.00);NMD=(LOC_Os03g28380|LOC_Os03g28380|1|1.00) GT 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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904 3 16356870 SNP-3.16355516. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28380-LOC_Os03g28389|LOC_Os03g28380-LOC_Os03g28389|intergenic_region|LOC_Os03g28380-LOC_Os03g28389|||n.16356870A>G|||||| GT ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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905 3 16359129 SNP-3.16357775. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28389|LOC_Os03g28389|transcript|LOC_Os03g28389.1|protein_coding|1/1|c.302C>A|p.Phe101Tyr|462/818|302/513|101/170||WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g28400|LOC_Os03g28400|transcript|LOC_Os03g28400.1|protein_coding|5/5|c.*686G>T|||||686|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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906 3 16359580 SNP-3.16358226. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g28400|LOC_Os03g28400|transcript|LOC_Os03g28400.1|protein_coding|5/5|c.*235G>T|||||235|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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907 3 16359798 SNP-3.16358444. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g28400|LOC_Os03g28400|transcript|LOC_Os03g28400.1|protein_coding|5/5|c.*17T>C|||||17|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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908 3 16361579 SNP-3.16360225. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28400|LOC_Os03g28400|transcript|LOC_Os03g28400.1|protein_coding|2/4|c.158+329T>C|||||| GT 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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909 3 16361683 SNP-3.16360329. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28400|LOC_Os03g28400|transcript|LOC_Os03g28400.1|protein_coding|2/4|c.158+225T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/1 0/1 0/0 ./. 0/1 0/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 0/1 0/1 0/1 ./. 1/1 0/1 0/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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910 3 16366254 SNP-3.16383185. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28400-LOC_Os03g28430|LOC_Os03g28400-LOC_Os03g28430|intergenic_region|LOC_Os03g28400-LOC_Os03g28430|||n.16366254C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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911 3 16368468 SNP-3.16380971. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28400-LOC_Os03g28430|LOC_Os03g28400-LOC_Os03g28430|intergenic_region|LOC_Os03g28400-LOC_Os03g28430|||n.16368468C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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912 3 16379310 SNP-3.16370129. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28420-LOC_Os03g28410|LOC_Os03g28420-LOC_Os03g28410|intergenic_region|LOC_Os03g28420-LOC_Os03g28410|||n.16379310C>A|||||| GT 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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913 3 16394336 SNP-3.16392980. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28410-LOC_Os03g28910|LOC_Os03g28410-LOC_Os03g28910|intergenic_region|LOC_Os03g28410-LOC_Os03g28910|||n.16394336A>G|||||| GT 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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914 3 16399536 SNP-3.16398180. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28910-LOC_Os03g28920|LOC_Os03g28910-LOC_Os03g28920|intergenic_region|LOC_Os03g28910-LOC_Os03g28920|||n.16399536C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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915 3 16399742 SNP-3.16398386. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28910-LOC_Os03g28920|LOC_Os03g28910-LOC_Os03g28920|intergenic_region|LOC_Os03g28910-LOC_Os03g28920|||n.16399742A>G|||||| GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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916 3 16400147 SNP-3.16398791. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28910-LOC_Os03g28920|LOC_Os03g28910-LOC_Os03g28920|intergenic_region|LOC_Os03g28910-LOC_Os03g28920|||n.16400147A>G|||||| GT ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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917 3 16400449 SNP-3.16399093. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28910-LOC_Os03g28920|LOC_Os03g28910-LOC_Os03g28920|intergenic_region|LOC_Os03g28910-LOC_Os03g28920|||n.16400449A>G|||||| GT ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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918 3 16400652 SNP-3.16399296. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28920|LOC_Os03g28920|transcript|LOC_Os03g28920.1|protein_coding|1/1|c.305G>T|p.Ala102Val|305/378|305/378|102/125||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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919 3 16400670 SNP-3.16399314. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28920|LOC_Os03g28920|transcript|LOC_Os03g28920.1|protein_coding|1/1|c.287G>T|p.Val96Val|287/378|287/378|96/125||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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920 3 16400718 SNP-3.16399362. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28920|LOC_Os03g28920|transcript|LOC_Os03g28920.1|protein_coding|1/1|c.239G>T|p.Leu80Leu|239/378|239/378|80/125||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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921 3 16401184 SNP-3.16399828. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28920-LOC_Os03g28940|LOC_Os03g28920-LOC_Os03g28940|intergenic_region|LOC_Os03g28920-LOC_Os03g28940|||n.16401184C>A|||||| GT 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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922 3 16407522 SNP-3.16406166. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28920-LOC_Os03g28940|LOC_Os03g28920-LOC_Os03g28940|intergenic_region|LOC_Os03g28920-LOC_Os03g28940|||n.16407522C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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923 3 16410397 SNP-3.16409041. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28940-LOC_Os03g28950|LOC_Os03g28940-LOC_Os03g28950|intergenic_region|LOC_Os03g28940-LOC_Os03g28950|||n.16410397A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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924 3 16411046 SNP-3.16409690. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28940-LOC_Os03g28950|LOC_Os03g28940-LOC_Os03g28950|intergenic_region|LOC_Os03g28940-LOC_Os03g28950|||n.16411046C>A|||||| GT ./. 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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925 3 16412003 SNP-3.16410647. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28940-LOC_Os03g28950|LOC_Os03g28940-LOC_Os03g28950|intergenic_region|LOC_Os03g28940-LOC_Os03g28950|||n.16412003C>A|||||| GT 0/1 0/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 0/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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926 3 16414648 SNP-3.16413292. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28940-LOC_Os03g28950|LOC_Os03g28940-LOC_Os03g28950|intergenic_region|LOC_Os03g28940-LOC_Os03g28950|||n.16414648C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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927 3 16415105 SNP-3.16413749. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28940-LOC_Os03g28950|LOC_Os03g28940-LOC_Os03g28950|intergenic_region|LOC_Os03g28940-LOC_Os03g28950|||n.16415105A>G|||||| GT ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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928 3 16417170 SNP-3.16415814. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28950|LOC_Os03g28950|transcript|LOC_Os03g28950.1|protein_coding|1/1|c.817T>C|p.Arg273Arg|817/1338|817/1338|273/445||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/1 ./. 0/1 0/1 0/0 1/1 0/1 0/1 0/1 0/1 ./. 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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929 3 16417403 SNP-3.16416047. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28950|LOC_Os03g28950|transcript|LOC_Os03g28950.1|protein_coding|1/1|c.584G>T|p.Asp195Val|584/1338|584/1338|195/445||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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930 3 16417511 SNP-3.16416155. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28950|LOC_Os03g28950|transcript|LOC_Os03g28950.1|protein_coding|1/1|c.476T>C|p.Asp159Ala|476/1338|476/1338|159/445||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/1 0/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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931 3 16417802 SNP-3.16416446. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28950|LOC_Os03g28950|transcript|LOC_Os03g28950.1|protein_coding|1/1|c.185G>T|p.Thr62Met|185/1338|185/1338|62/445||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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932 3 16419503 SNP-3.16418147. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28950-LOC_Os03g28960|LOC_Os03g28950-LOC_Os03g28960|intergenic_region|LOC_Os03g28950-LOC_Os03g28960|||n.16419503C>A|||||| GT 1/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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933 3 16420292 SNP-3.16418936. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28950-LOC_Os03g28960|LOC_Os03g28950-LOC_Os03g28960|intergenic_region|LOC_Os03g28950-LOC_Os03g28960|||n.16420292C>A|||||| GT 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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934 3 16421225 SNP-3.16419869. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28950-LOC_Os03g28960|LOC_Os03g28950-LOC_Os03g28960|intergenic_region|LOC_Os03g28950-LOC_Os03g28960|||n.16421225A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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935 3 16422830 SNP-3.16421474. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28950-LOC_Os03g28960|LOC_Os03g28950-LOC_Os03g28960|intergenic_region|LOC_Os03g28950-LOC_Os03g28960|||n.16422830C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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936 3 16425653 SNP-3.16424297. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28950-LOC_Os03g28960|LOC_Os03g28950-LOC_Os03g28960|intergenic_region|LOC_Os03g28950-LOC_Os03g28960|||n.16425653C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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937 3 16427008 SNP-3.16425652. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28960|LOC_Os03g28960|transcript|LOC_Os03g28960.1|protein_coding|1/25|c.84+99C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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938 3 16428179 SNP-3.16426823. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28960|LOC_Os03g28960|transcript|LOC_Os03g28960.1|protein_coding|5/26|c.249C>A|p.Pro83Pro|249/2400|249/2400|83/799||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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939 3 16431723 SNP-3.16430367. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28960|LOC_Os03g28960|transcript|LOC_Os03g28960.1|protein_coding|12/25|c.967-253A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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940 3 16432162 SNP-3.16430806. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28960|LOC_Os03g28960|transcript|LOC_Os03g28960.1|protein_coding|14/26|c.1080C>A|p.Ala360Ala|1080/2400|1080/2400|360/799||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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941 3 16433028 SNP-3.16431672. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g28960|LOC_Os03g28960|transcript|LOC_Os03g28960.1|protein_coding|16/26|c.1299C>A|p.Asp433Glu|1299/2400|1299/2400|433/799||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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942 3 16437602 SNP-3.16436246. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g28960|LOC_Os03g28960|transcript|LOC_Os03g28960.1|protein_coding|22/25|c.2032-114A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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943 3 16439107 SNP-3.16437751. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g28960|LOC_Os03g28960|transcript|LOC_Os03g28960.1|protein_coding|26/26|c.2391C>A|p.Thr797Thr|2391/2400|2391/2400|797/799||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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944 3 16440472 SNP-3.16439116. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g28960-LOC_Os03g28969|LOC_Os03g28960-LOC_Os03g28969|intergenic_region|LOC_Os03g28960-LOC_Os03g28969|||n.16440472C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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945 3 16442247 SNP-3.16440891. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28960-LOC_Os03g28969|LOC_Os03g28960-LOC_Os03g28969|intergenic_region|LOC_Os03g28960-LOC_Os03g28969|||n.16442247A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/1 0/1 1/1 0/0 ./. 0/1 0/1 0/0 0/0 ./. ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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946 3 16442748 SNP-3.16441392. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28960-LOC_Os03g28969|LOC_Os03g28960-LOC_Os03g28969|intergenic_region|LOC_Os03g28960-LOC_Os03g28969|||n.16442748A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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947 3 16444005 SNP-3.16442649. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28969|LOC_Os03g28969|transcript|LOC_Os03g28969.1|protein_coding|3/3|c.279-297G>T|||||| GT 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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948 3 16444551 SNP-3.16443195. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28969|LOC_Os03g28969|transcript|LOC_Os03g28969.1|protein_coding|3/4|c.212T>C|p.Ala71Ala|212/387|212/387|71/128||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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949 3 16444877 SNP-3.16443521. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28969|LOC_Os03g28969|transcript|LOC_Os03g28969.1|protein_coding|2/3|c.184-298G>T|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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950 3 16445595 SNP-3.16444239. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g28969|LOC_Os03g28969|transcript|LOC_Os03g28969.1|protein_coding|2/3|c.183+123G>T|||||| GT 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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951 3 16445816 SNP-3.16444460. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g28969|LOC_Os03g28969|transcript|LOC_Os03g28969.1|protein_coding|2/4|c.85T>C|p.Gly29Arg|85/387|85/387|29/128||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/1 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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952 3 16447361 SNP-3.16446005. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28969-LOC_Os03g28980|LOC_Os03g28969-LOC_Os03g28980|intergenic_region|LOC_Os03g28969-LOC_Os03g28980|||n.16447361A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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953 3 16450518 SNP-3.16449162. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g28980|LOC_Os03g28980|transcript|LOC_Os03g28980.1|protein_coding|1/1|c.1053A>G|p.Val351Val|1172/2622|1053/2235|351/744||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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954 3 16452818 SNP-3.16451462. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28980-LOC_Os03g28990|LOC_Os03g28980-LOC_Os03g28990|intergenic_region|LOC_Os03g28980-LOC_Os03g28990|||n.16452818A>G|||||| GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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955 3 16454535 SNP-3.16453179. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g28980-LOC_Os03g28990|LOC_Os03g28980-LOC_Os03g28990|intergenic_region|LOC_Os03g28980-LOC_Os03g28990|||n.16454535A>G|||||| GT ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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956 3 16461364 SNP-3.16460008. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29000-LOC_Os03g29010|LOC_Os03g29000-LOC_Os03g29010|intergenic_region|LOC_Os03g29000-LOC_Os03g29010|||n.16461364A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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957 3 16462377 SNP-3.16461021. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29000-LOC_Os03g29010|LOC_Os03g29000-LOC_Os03g29010|intergenic_region|LOC_Os03g29000-LOC_Os03g29010|||n.16462377A>G|||||| GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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958 3 16463564 SNP-3.16462208. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29000-LOC_Os03g29010|LOC_Os03g29000-LOC_Os03g29010|intergenic_region|LOC_Os03g29000-LOC_Os03g29010|||n.16463564A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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959 3 16464250 SNP-3.16462894. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29000-LOC_Os03g29010|LOC_Os03g29000-LOC_Os03g29010|intergenic_region|LOC_Os03g29000-LOC_Os03g29010|||n.16464250C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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960 3 16464819 SNP-3.16463463. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29000-LOC_Os03g29010|LOC_Os03g29000-LOC_Os03g29010|intergenic_region|LOC_Os03g29000-LOC_Os03g29010|||n.16464819C>A|||||| GT 0/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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961 3 16465142 SNP-3.16463786. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29000-LOC_Os03g29010|LOC_Os03g29000-LOC_Os03g29010|intergenic_region|LOC_Os03g29000-LOC_Os03g29010|||n.16465142A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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962 3 16465232 SNP-3.16463876. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29000-LOC_Os03g29010|LOC_Os03g29000-LOC_Os03g29010|intergenic_region|LOC_Os03g29000-LOC_Os03g29010|||n.16465232A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 1/1 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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963 3 16465920 SNP-3.16464564. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29000-LOC_Os03g29010|LOC_Os03g29000-LOC_Os03g29010|intergenic_region|LOC_Os03g29000-LOC_Os03g29010|||n.16465920C>A|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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964 3 16469586 SNP-3.16468230ac. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29010-LOC_Os03g29020|LOC_Os03g29010-LOC_Os03g29020|intergenic_region|LOC_Os03g29010-LOC_Os03g29020|||n.16469586A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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965 3 16470346 SNP-3.16468990. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29010-LOC_Os03g29020|LOC_Os03g29010-LOC_Os03g29020|intergenic_region|LOC_Os03g29010-LOC_Os03g29020|||n.16470346A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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966 3 16473434 SNP-3.16472078. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29020|LOC_Os03g29020|transcript|LOC_Os03g29020.1|protein_coding|6/7|c.1738-181T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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967 3 16476167 SNP-3.16474811. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29020-LOC_Os03g29035|LOC_Os03g29020-LOC_Os03g29035|intergenic_region|LOC_Os03g29020-LOC_Os03g29035|||n.16476167C>A|||||| GT 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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968 3 16476452 SNP-3.16475096. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29020-LOC_Os03g29035|LOC_Os03g29020-LOC_Os03g29035|intergenic_region|LOC_Os03g29020-LOC_Os03g29035|||n.16476452C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/1 1/1 ./. 0/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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969 3 16477921 SNP-3.16476565. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29020-LOC_Os03g29035|LOC_Os03g29020-LOC_Os03g29035|intergenic_region|LOC_Os03g29020-LOC_Os03g29035|||n.16477921C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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970 3 16478110 SNP-3.16476754. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29020-LOC_Os03g29035|LOC_Os03g29020-LOC_Os03g29035|intergenic_region|LOC_Os03g29020-LOC_Os03g29035|||n.16478110A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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971 3 16478160 SNP-3.16476804. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29020-LOC_Os03g29035|LOC_Os03g29020-LOC_Os03g29035|intergenic_region|LOC_Os03g29020-LOC_Os03g29035|||n.16478160A>G|||||| GT 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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972 3 16478593 SNP-3.16477237. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29020-LOC_Os03g29035|LOC_Os03g29020-LOC_Os03g29035|intergenic_region|LOC_Os03g29020-LOC_Os03g29035|||n.16478593C>A|||||| GT 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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973 3 16481773 SNP-3.16480417. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29020-LOC_Os03g29035|LOC_Os03g29020-LOC_Os03g29035|intergenic_region|LOC_Os03g29020-LOC_Os03g29035|||n.16481773A>G|||||| GT ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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974 3 16483495 SNP-3.16482139. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29020-LOC_Os03g29035|LOC_Os03g29020-LOC_Os03g29035|intergenic_region|LOC_Os03g29020-LOC_Os03g29035|||n.16483495C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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975 3 16494653 SNP-3.16493297. A G . . PR;ANN=G|splice_region_variant&synonymous_variant|LOW|LOC_Os03g29035|LOC_Os03g29035|transcript|LOC_Os03g29035.1|protein_coding|2/7|c.266T>C|p.Thr89Thr|266/2304|266/2304|89/767||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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976 3 16496539 SNP-3.16495183. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29035-LOC_Os03g29045|LOC_Os03g29035-LOC_Os03g29045|intergenic_region|LOC_Os03g29035-LOC_Os03g29045|||n.16496539A>G|||||| GT 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/1 ./. 1/1 0/1 ./. ./. ./. 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/1 1/1 0/1 ./. ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/1 ./. 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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977 3 16500736 SNP-3.16499380. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29035-LOC_Os03g29045|LOC_Os03g29035-LOC_Os03g29045|intergenic_region|LOC_Os03g29035-LOC_Os03g29045|||n.16500736C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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978 3 16501781 SNP-3.16500425. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29035-LOC_Os03g29045|LOC_Os03g29035-LOC_Os03g29045|intergenic_region|LOC_Os03g29035-LOC_Os03g29045|||n.16501781A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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979 3 16506045 SNP-3.16504689. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29045-LOC_Os03g29065|LOC_Os03g29045-LOC_Os03g29065|intergenic_region|LOC_Os03g29045-LOC_Os03g29065|||n.16506045A>G|||||| GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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980 3 16506581 SNP-3.16505225. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29045-LOC_Os03g29065|LOC_Os03g29045-LOC_Os03g29065|intergenic_region|LOC_Os03g29045-LOC_Os03g29065|||n.16506581C>A|||||| GT 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/1 0/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 ./. 1/1 0/0 ./. 0/1 ./. 1/1 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 |
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981 3 16506692 SNP-3.16505336. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29045-LOC_Os03g29065|LOC_Os03g29045-LOC_Os03g29065|intergenic_region|LOC_Os03g29045-LOC_Os03g29065|||n.16506692A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 |
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982 3 16509058 SNP-3.16507702. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29045-LOC_Os03g29065|LOC_Os03g29045-LOC_Os03g29065|intergenic_region|LOC_Os03g29045-LOC_Os03g29065|||n.16509058A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 |
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983 3 16509658 SNP-3.16508302. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29045-LOC_Os03g29065|LOC_Os03g29045-LOC_Os03g29065|intergenic_region|LOC_Os03g29045-LOC_Os03g29065|||n.16509658A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 |
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984 3 16510248 SNP-3.16508892. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29045-LOC_Os03g29065|LOC_Os03g29045-LOC_Os03g29065|intergenic_region|LOC_Os03g29045-LOC_Os03g29065|||n.16510248A>G|||||| GT 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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985 3 16510365 SNP-3.16509009. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29045-LOC_Os03g29065|LOC_Os03g29045-LOC_Os03g29065|intergenic_region|LOC_Os03g29045-LOC_Os03g29065|||n.16510365A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. ./. |
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986 3 16510486 SNP-3.16509130. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29045-LOC_Os03g29065|LOC_Os03g29045-LOC_Os03g29065|intergenic_region|LOC_Os03g29045-LOC_Os03g29065|||n.16510486C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 |
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987 3 16512835 SNP-3.16511479. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29065|LOC_Os03g29065|transcript|LOC_Os03g29065.1|protein_coding|1/1|c.162C>A|p.Glu54Glu|162/345|162/345|54/114||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 |
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988 3 16515197 SNP-3.16513841. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29065-LOC_Os03g29075|LOC_Os03g29065-LOC_Os03g29075|intergenic_region|LOC_Os03g29065-LOC_Os03g29075|||n.16515197C>A|||||| GT ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 |
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989 3 16516237 SNP-3.16514881. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29065-LOC_Os03g29075|LOC_Os03g29065-LOC_Os03g29075|intergenic_region|LOC_Os03g29065-LOC_Os03g29075|||n.16516237C>A|||||| GT ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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990 3 16518919 SNP-3.16517563. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29075|LOC_Os03g29075|transcript|LOC_Os03g29075.1|protein_coding|2/2|c.2034A>G|p.Ser678Ser|2034/2070|2034/2070|678/689||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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991 3 16521187 SNP-3.16519831. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29085|LOC_Os03g29085|transcript|LOC_Os03g29085.1|protein_coding|5/6|c.1545C>A|p.Asn515Lys|1545/3021|1545/3021|515/1006||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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992 3 16523463 SNP-3.16522107. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29100|LOC_Os03g29100|transcript|LOC_Os03g29100.1|protein_coding|9/9|c.1880-259T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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993 3 16524472 SNP-3.16523116. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29100|LOC_Os03g29100|transcript|LOC_Os03g29100.1|protein_coding|7/9|c.1451+34T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/1 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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994 3 16528169 SNP-3.16526813. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29100-LOC_Os03g29110|LOC_Os03g29100-LOC_Os03g29110|intergenic_region|LOC_Os03g29100-LOC_Os03g29110|||n.16528169A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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diff
changeset
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995 3 16528623 SNP-3.16527267. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29100-LOC_Os03g29110|LOC_Os03g29100-LOC_Os03g29110|intergenic_region|LOC_Os03g29100-LOC_Os03g29110|||n.16528623A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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996 3 16529883 SNP-3.16528527. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29100-LOC_Os03g29110|LOC_Os03g29100-LOC_Os03g29110|intergenic_region|LOC_Os03g29100-LOC_Os03g29110|||n.16529883A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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997 3 16530467 SNP-3.16529111. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29100-LOC_Os03g29110|LOC_Os03g29100-LOC_Os03g29110|intergenic_region|LOC_Os03g29100-LOC_Os03g29110|||n.16530467A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 ./. 0/1 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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998 3 16530583 SNP-3.16529227. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29100-LOC_Os03g29110|LOC_Os03g29100-LOC_Os03g29110|intergenic_region|LOC_Os03g29100-LOC_Os03g29110|||n.16530583A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 ./. 1/1 ./. ./. ./. 0/0 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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999 3 16530591 SNP-3.16529235. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29100-LOC_Os03g29110|LOC_Os03g29100-LOC_Os03g29110|intergenic_region|LOC_Os03g29100-LOC_Os03g29110|||n.16530591A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1000 3 16530801 SNP-3.16529445. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29100-LOC_Os03g29110|LOC_Os03g29100-LOC_Os03g29110|intergenic_region|LOC_Os03g29100-LOC_Os03g29110|||n.16530801A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1001 3 16537232 SNP-3.16535876. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29120|LOC_Os03g29120|transcript|LOC_Os03g29120.1|protein_coding|2/3|c.1959G>T|p.Asn653Asn|1959/2592|1959/2592|653/863||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1002 3 16548895 SNP-3.16547539. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29140|LOC_Os03g29140|transcript|LOC_Os03g29140.1|protein_coding|1/1|c.340+188A>G|||||| GT 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1003 3 16548979 SNP-3.16547623. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29140|LOC_Os03g29140|transcript|LOC_Os03g29140.1|protein_coding|1/1|c.340+272A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1004 3 16549393 SNP-3.16548037. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29140|LOC_Os03g29140|transcript|LOC_Os03g29140.1|protein_coding|1/1|c.341-384A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1005 3 16549481 SNP-3.16548125. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29140|LOC_Os03g29140|transcript|LOC_Os03g29140.1|protein_coding|1/1|c.341-296A>G|||||| GT 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1006 3 16549648 SNP-3.16548292. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29140|LOC_Os03g29140|transcript|LOC_Os03g29140.1|protein_coding|1/1|c.341-129C>A|||||| GT 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1007 3 16549691 SNP-3.16548335. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29140|LOC_Os03g29140|transcript|LOC_Os03g29140.1|protein_coding|1/1|c.341-86A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1008 3 16549728 SNP-3.16548372. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29140|LOC_Os03g29140|transcript|LOC_Os03g29140.1|protein_coding|1/1|c.341-49A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1009 3 16550325 SNP-3.16548969. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29140-LOC_Os03g29150|LOC_Os03g29140-LOC_Os03g29150|intergenic_region|LOC_Os03g29140-LOC_Os03g29150|||n.16550325A>G|||||| GT 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 0/1 1/1 0/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1010 3 16550359 SNP-3.16549003. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29140-LOC_Os03g29150|LOC_Os03g29140-LOC_Os03g29150|intergenic_region|LOC_Os03g29140-LOC_Os03g29150|||n.16550359A>G|||||| GT 0/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1011 3 16550385 SNP-3.16549029. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29140-LOC_Os03g29150|LOC_Os03g29140-LOC_Os03g29150|intergenic_region|LOC_Os03g29140-LOC_Os03g29150|||n.16550385C>A|||||| GT ./. 1/1 0/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1012 3 16550983 SNP-3.16549627. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29140-LOC_Os03g29150|LOC_Os03g29140-LOC_Os03g29150|intergenic_region|LOC_Os03g29140-LOC_Os03g29150|||n.16550983A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1013 3 16551258 SNP-3.16549902. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29140-LOC_Os03g29150|LOC_Os03g29140-LOC_Os03g29150|intergenic_region|LOC_Os03g29140-LOC_Os03g29150|||n.16551258A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1014 3 16552163 SNP-3.16550807. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.1|protein_coding|1/5|c.286+427C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.2|protein_coding|1/4|c.286+427C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.3|protein_coding|1/5|c.286+427C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/1 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1015 3 16552494 SNP-3.16551138. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.1|protein_coding|1/5|c.286+758C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.2|protein_coding|1/4|c.286+758C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.3|protein_coding|1/5|c.286+758C>A|||||| GT 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1016 3 16556476 SNP-3.16555120. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.1|protein_coding|1/5|c.287-471C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.2|protein_coding|1/4|c.287-471C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.3|protein_coding|1/5|c.287-471C>A|||||| GT 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1017 3 16557632 SNP-3.16556276. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.1|protein_coding|2/5|c.377-564A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.2|protein_coding|2/4|c.377-564A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.3|protein_coding|2/5|c.377-564A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1018 3 16559052 SNP-3.16557696. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.1|protein_coding|3/5|c.511-218A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.2|protein_coding|3/4|c.511-218A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.3|protein_coding|3/5|c.511-218A>G|||||| GT 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1019 3 16559774 SNP-3.16558418. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.1|protein_coding|4/5|c.669+346A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.2|protein_coding|4/4|c.669+346A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.3|protein_coding|4/5|c.669+346A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1020 3 16560375 SNP-3.16559019. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.1|protein_coding|4/5|c.670-226A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.2|protein_coding|4/4|c.670-226A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.3|protein_coding|4/5|c.670-226A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1021 3 16560612 SNP-3.16559256. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.1|protein_coding|5/6|c.681A>G|p.Gly227Gly|778/1167|681/876|227/291||WARNING_REF_DOES_NOT_MATCH_GENOME,G|synonymous_variant|LOW|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.2|protein_coding|5/5|c.681A>G|p.Gly227Gly|778/1239|681/810|227/269||WARNING_REF_DOES_NOT_MATCH_GENOME,G|synonymous_variant|LOW|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.3|protein_coding|5/6|c.681A>G|p.Gly227Gly|778/1189|681/801|227/266||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1022 3 16560855 SNP-3.16559499. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.1|protein_coding|6/6|c.852C>A|p.Leu284Leu|949/1167|852/876|284/291||WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.2|protein_coding|5/5|c.*114C>A|||||114|WARNING_REF_DOES_NOT_MATCH_GENOME,A|intron_variant|MODIFIER|LOC_Os03g29150|LOC_Os03g29150|transcript|LOC_Os03g29150.3|protein_coding|5/5|c.792+132C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1023 3 16562821 SNP-3.16561465. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29150-LOC_Os03g29170|LOC_Os03g29150-LOC_Os03g29170|intergenic_region|LOC_Os03g29150-LOC_Os03g29170|||n.16562821A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1024 3 16564271 SNP-3.16562915. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29150-LOC_Os03g29170|LOC_Os03g29150-LOC_Os03g29170|intergenic_region|LOC_Os03g29150-LOC_Os03g29170|||n.16564271A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1025 3 16566367 SNP-3.16565011. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29150-LOC_Os03g29170|LOC_Os03g29150-LOC_Os03g29170|intergenic_region|LOC_Os03g29150-LOC_Os03g29170|||n.16566367A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 0/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/1 0/1 1/1 ./. 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1026 3 16566848 SNP-3.16565492. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29150-LOC_Os03g29170|LOC_Os03g29150-LOC_Os03g29170|intergenic_region|LOC_Os03g29150-LOC_Os03g29170|||n.16566848A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1027 3 16569869 SNP-3.16568513. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29150-LOC_Os03g29170|LOC_Os03g29150-LOC_Os03g29170|intergenic_region|LOC_Os03g29150-LOC_Os03g29170|||n.16569869A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1028 3 16574681 SNP-3.16573325. C A . . PR;ANN=A|splice_region_variant&intron_variant|LOW|LOC_Os03g29170|LOC_Os03g29170|transcript|LOC_Os03g29170.1|protein_coding|5/11|c.769-3C>A||||||,A|splice_region_variant&intron_variant|LOW|LOC_Os03g29170|LOC_Os03g29170|transcript|LOC_Os03g29170.2|protein_coding|5/9|c.769-3C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1029 3 16576245 SNP-3.16574889. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29170|LOC_Os03g29170|transcript|LOC_Os03g29170.1|protein_coding|7/12|c.1015A>G|p.Gln339Glu|1130/2142|1015/1686|339/561||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g29170|LOC_Os03g29170|transcript|LOC_Os03g29170.2|protein_coding|7/10|c.1015A>G|p.Gln339Glu|1109/2252|1015/1425|339/474||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1030 3 16586851 SNP-3.16585495. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g29184|LOC_Os03g29184|transcript|LOC_Os03g29184.1|protein_coding|1/1|c.-2G>T|||||2|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1031 3 16589439 SNP-3.16588083. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29184-LOC_Os03g29190|LOC_Os03g29184-LOC_Os03g29190|intergenic_region|LOC_Os03g29184-LOC_Os03g29190|||n.16589439A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 ./. 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1032 3 16589518 SNP-3.16588162. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29184-LOC_Os03g29190|LOC_Os03g29184-LOC_Os03g29190|intergenic_region|LOC_Os03g29184-LOC_Os03g29190|||n.16589518C>A|||||| GT 1/1 1/1 1/1 1/1 0/0 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/1 0/0 ./. 1/1 0/0 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1033 3 16589605 SNP-3.16588249. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29184-LOC_Os03g29190|LOC_Os03g29184-LOC_Os03g29190|intergenic_region|LOC_Os03g29184-LOC_Os03g29190|||n.16589605A>G|||||| GT 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1034 3 16589757 SNP-3.16588401. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29184-LOC_Os03g29190|LOC_Os03g29184-LOC_Os03g29190|intergenic_region|LOC_Os03g29184-LOC_Os03g29190|||n.16589757C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1035 3 16590643 SNP-3.16589287. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29190|LOC_Os03g29190|transcript|LOC_Os03g29190.1|protein_coding|1/4|c.78+295A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29190|LOC_Os03g29190|transcript|LOC_Os03g29190.2|protein_coding|1/3|c.78+295A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1036 3 16591121 SNP-3.16589765. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29190|LOC_Os03g29190|transcript|LOC_Os03g29190.1|protein_coding|1/4|c.78+773A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29190|LOC_Os03g29190|transcript|LOC_Os03g29190.2|protein_coding|1/3|c.78+773A>G|||||| GT ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1037 3 16594838 SNP-3.16593482. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29190|LOC_Os03g29190|transcript|LOC_Os03g29190.1|protein_coding|4/4|c.1111-150C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29190|LOC_Os03g29190|transcript|LOC_Os03g29190.2|protein_coding|3/3|c.1054-150C>A|||||| GT 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/1 ./. ./. 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1038 3 16598761 SNP-3.16597405. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29190-LOC_Os03g29194|LOC_Os03g29190-LOC_Os03g29194|intergenic_region|LOC_Os03g29190-LOC_Os03g29194|||n.16598761A>G|||||| GT ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1039 3 16599384 SNP-3.16598028. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29190-LOC_Os03g29194|LOC_Os03g29190-LOC_Os03g29194|intergenic_region|LOC_Os03g29190-LOC_Os03g29194|||n.16599384A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1040 3 16600374 SNP-3.16599018. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29194|LOC_Os03g29194|transcript|LOC_Os03g29194.1|protein_coding|3/3|c.97-380T>C|||||| GT 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1041 3 16600820 SNP-3.16599464. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29194|LOC_Os03g29194|transcript|LOC_Os03g29194.1|protein_coding|3/3|c.96+593G>T|||||| GT 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1042 3 16600952 SNP-3.16599596. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29194|LOC_Os03g29194|transcript|LOC_Os03g29194.1|protein_coding|3/3|c.96+461T>C|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1043 3 16601019 SNP-3.16599663. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29194|LOC_Os03g29194|transcript|LOC_Os03g29194.1|protein_coding|3/3|c.96+394G>T|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/1 1/1 0/1 0/1 0/0 ./. 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1044 3 16601645 SNP-3.16600289. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29194|LOC_Os03g29194|transcript|LOC_Os03g29194.1|protein_coding|2/3|c.60+53T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1045 3 16602272 SNP-3.16600916. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29194-LOC_Os03g29200|LOC_Os03g29194-LOC_Os03g29200|intergenic_region|LOC_Os03g29194-LOC_Os03g29200|||n.16602272C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1046 3 16608415 SNP-3.16607059. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29212|LOC_Os03g29212|transcript|LOC_Os03g29212.1|protein_coding|2/5|c.703A>G|p.Gly235Gly|703/1554|703/1554|235/517||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1047 3 16608823 SNP-3.16607467. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29212|LOC_Os03g29212|transcript|LOC_Os03g29212.1|protein_coding|2/4|c.864+247A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1048 3 16609108 SNP-3.16607752. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29212|LOC_Os03g29212|transcript|LOC_Os03g29212.1|protein_coding|2/4|c.865-175C>A|||||| GT 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1049 3 16609519 SNP-3.16608163. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29212|LOC_Os03g29212|transcript|LOC_Os03g29212.1|protein_coding|4/4|c.1009+59A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1050 3 16612026 SNP-3.16610670. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29212-LOC_Os03g29220|LOC_Os03g29212-LOC_Os03g29220|intergenic_region|LOC_Os03g29212-LOC_Os03g29220|||n.16612026C>A|||||| GT 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1051 3 16612581 SNP-3.16611225. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29212-LOC_Os03g29220|LOC_Os03g29212-LOC_Os03g29220|intergenic_region|LOC_Os03g29212-LOC_Os03g29220|||n.16612581C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1052 3 16612603 SNP-3.16611247. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29212-LOC_Os03g29220|LOC_Os03g29212-LOC_Os03g29220|intergenic_region|LOC_Os03g29212-LOC_Os03g29220|||n.16612603C>A|||||| GT ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1053 3 16613494 SNP-3.16612138. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29212-LOC_Os03g29220|LOC_Os03g29212-LOC_Os03g29220|intergenic_region|LOC_Os03g29212-LOC_Os03g29220|||n.16613494A>G|||||| GT ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1054 3 16614917 SNP-3.16613561. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29212-LOC_Os03g29220|LOC_Os03g29212-LOC_Os03g29220|intergenic_region|LOC_Os03g29212-LOC_Os03g29220|||n.16614917C>A|||||| GT 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1055 3 16626255 SNP-3.16624899. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29230-LOC_Os03g29240|LOC_Os03g29230-LOC_Os03g29240|intergenic_region|LOC_Os03g29230-LOC_Os03g29240|||n.16626255A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1056 3 16626456 SNP-3.16625100. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29230-LOC_Os03g29240|LOC_Os03g29230-LOC_Os03g29240|intergenic_region|LOC_Os03g29230-LOC_Os03g29240|||n.16626456C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1057 3 16627656 SNP-3.16626300. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29230-LOC_Os03g29240|LOC_Os03g29230-LOC_Os03g29240|intergenic_region|LOC_Os03g29230-LOC_Os03g29240|||n.16627656A>G|||||| GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1058 3 16629653 SNP-3.16628297. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29240|LOC_Os03g29240|transcript|LOC_Os03g29240.1|protein_coding|2/4|c.318A>G|p.Ser106Ser|388/2093|318/1746|106/581|| GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1059 3 16629905 SNP-3.16628549. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29240|LOC_Os03g29240|transcript|LOC_Os03g29240.1|protein_coding|2/4|c.570C>A|p.Thr190Thr|640/2093|570/1746|190/581|| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1060 3 16630371 SNP-3.16629015. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29240|LOC_Os03g29240|transcript|LOC_Os03g29240.1|protein_coding|3/4|c.944A>G|p.Gly315Gly|1014/2093|944/1746|315/581||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1061 3 16630882 SNP-3.16629526. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29240|LOC_Os03g29240|transcript|LOC_Os03g29240.1|protein_coding|3/3|c.1075-247C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1062 3 16633913 SNP-3.16632557. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29240-LOC_Os03g29244|LOC_Os03g29240-LOC_Os03g29244|intergenic_region|LOC_Os03g29240-LOC_Os03g29244|||n.16633913C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. ./. ./. ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/0 ./. 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1063 3 16635723 SNP-3.16634367. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29244-LOC_Os03g29250|LOC_Os03g29244-LOC_Os03g29250|intergenic_region|LOC_Os03g29244-LOC_Os03g29250|||n.16635723A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1064 3 16636564 SNP-3.16635208. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29244-LOC_Os03g29250|LOC_Os03g29244-LOC_Os03g29250|intergenic_region|LOC_Os03g29244-LOC_Os03g29250|||n.16636564A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1065 3 16636964 SNP-3.16635608. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29244-LOC_Os03g29250|LOC_Os03g29244-LOC_Os03g29250|intergenic_region|LOC_Os03g29244-LOC_Os03g29250|||n.16636964C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1066 3 16638512 SNP-3.16637156. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29244-LOC_Os03g29250|LOC_Os03g29244-LOC_Os03g29250|intergenic_region|LOC_Os03g29244-LOC_Os03g29250|||n.16638512A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1067 3 16638642 SNP-3.16637286. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29244-LOC_Os03g29250|LOC_Os03g29244-LOC_Os03g29250|intergenic_region|LOC_Os03g29244-LOC_Os03g29250|||n.16638642A>G|||||| GT ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 |
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1068 3 16639411 SNP-3.16638055. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29244-LOC_Os03g29250|LOC_Os03g29244-LOC_Os03g29250|intergenic_region|LOC_Os03g29244-LOC_Os03g29250|||n.16639411A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1069 3 16642376 SNP-3.16641020. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29244-LOC_Os03g29250|LOC_Os03g29244-LOC_Os03g29250|intergenic_region|LOC_Os03g29244-LOC_Os03g29250|||n.16642376A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1070 3 16643300 SNP-3.16641944. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29244-LOC_Os03g29250|LOC_Os03g29244-LOC_Os03g29250|intergenic_region|LOC_Os03g29244-LOC_Os03g29250|||n.16643300C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1071 3 16643982 SNP-3.16642626. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29244-LOC_Os03g29250|LOC_Os03g29244-LOC_Os03g29250|intergenic_region|LOC_Os03g29244-LOC_Os03g29250|||n.16643982A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 0/1 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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1072 3 16646620 SNP-3.16645264. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29250-LOC_Os03g29260|LOC_Os03g29250-LOC_Os03g29260|intergenic_region|LOC_Os03g29250-LOC_Os03g29260|||n.16646620A>G|||||| GT 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1073 3 16647194 SNP-3.16645838. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29250-LOC_Os03g29260|LOC_Os03g29250-LOC_Os03g29260|intergenic_region|LOC_Os03g29250-LOC_Os03g29260|||n.16647194A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1074 3 16647665 SNP-3.16646309. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29250-LOC_Os03g29260|LOC_Os03g29250-LOC_Os03g29260|intergenic_region|LOC_Os03g29250-LOC_Os03g29260|||n.16647665C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1075 3 16650006 SNP-3.16648650. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29250-LOC_Os03g29260|LOC_Os03g29250-LOC_Os03g29260|intergenic_region|LOC_Os03g29250-LOC_Os03g29260|||n.16650006A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 1/1 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1076 3 16650432 SNP-3.16649076. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29250-LOC_Os03g29260|LOC_Os03g29250-LOC_Os03g29260|intergenic_region|LOC_Os03g29250-LOC_Os03g29260|||n.16650432A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1077 3 16652819 SNP-3.16651463. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29250-LOC_Os03g29260|LOC_Os03g29250-LOC_Os03g29260|intergenic_region|LOC_Os03g29250-LOC_Os03g29260|||n.16652819A>G|||||| GT ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1078 3 16654501 SNP-3.16653145. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29260|LOC_Os03g29260|transcript|LOC_Os03g29260.2|protein_coding|1/7|c.-1+31C>A|||||| GT 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/1 ./. 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1079 3 16655352 SNP-3.16653996. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29260|LOC_Os03g29260|transcript|LOC_Os03g29260.2|protein_coding|2/7|c.87-15C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1080 3 16659023 SNP-3.16657667. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29260-LOC_Os03g29270|LOC_Os03g29260-LOC_Os03g29270|intergenic_region|LOC_Os03g29260-LOC_Os03g29270|||n.16659023A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1081 3 16659994 SNP-3.16658638. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29260-LOC_Os03g29270|LOC_Os03g29260-LOC_Os03g29270|intergenic_region|LOC_Os03g29260-LOC_Os03g29270|||n.16659994A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1082 3 16661316 SNP-3.16659960. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29270|LOC_Os03g29270|transcript|LOC_Os03g29270.1|protein_coding|3/4|c.838-331T>C|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1083 3 16662852 SNP-3.16661496. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29270|LOC_Os03g29270|transcript|LOC_Os03g29270.1|protein_coding|1/5|c.33T>C|p.Ser11Ser|33/1068|33/1068|11/355||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1084 3 16668298 SNP-3.16666942. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29270-LOC_Os03g29280|LOC_Os03g29270-LOC_Os03g29280|intergenic_region|LOC_Os03g29270-LOC_Os03g29280|||n.16668298A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1085 3 16670653 SNP-3.16669297. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29270-LOC_Os03g29280|LOC_Os03g29270-LOC_Os03g29280|intergenic_region|LOC_Os03g29270-LOC_Os03g29280|||n.16670653C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1086 3 16671466 SNP-3.16670110. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29270-LOC_Os03g29280|LOC_Os03g29270-LOC_Os03g29280|intergenic_region|LOC_Os03g29270-LOC_Os03g29280|||n.16671466C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1087 3 16671695 SNP-3.16670339. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29270-LOC_Os03g29280|LOC_Os03g29270-LOC_Os03g29280|intergenic_region|LOC_Os03g29270-LOC_Os03g29280|||n.16671695A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/1 ./. ./. ./. 0/1 1/1 1/1 ./. ./. ./. ./. ./. 0/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1088 3 16679391 SNP-3.16678035. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29290|LOC_Os03g29290|transcript|LOC_Os03g29290.1|protein_coding|2/9|c.461G>T|p.Leu154Leu|461/2736|461/2736|154/911||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1089 3 16682908 SNP-3.16681552. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29310|LOC_Os03g29310|transcript|LOC_Os03g29310.1|protein_coding|3/3|c.1536T>C|p.Ser512Ser|1536/2580|1536/2580|512/859||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1090 3 16685894 SNP-3.16684538. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29310-LOC_Os03g29330|LOC_Os03g29310-LOC_Os03g29330|intergenic_region|LOC_Os03g29310-LOC_Os03g29330|||n.16685894A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1091 3 16685989 SNP-3.16684633. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29310-LOC_Os03g29330|LOC_Os03g29310-LOC_Os03g29330|intergenic_region|LOC_Os03g29310-LOC_Os03g29330|||n.16685989A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1092 3 16688049 SNP-3.16686693. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29310-LOC_Os03g29330|LOC_Os03g29310-LOC_Os03g29330|intergenic_region|LOC_Os03g29310-LOC_Os03g29330|||n.16688049C>A|||||| GT 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1093 3 16688126 SNP-3.16686770. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29310-LOC_Os03g29330|LOC_Os03g29310-LOC_Os03g29330|intergenic_region|LOC_Os03g29310-LOC_Os03g29330|||n.16688126C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1094 3 16692659 SNP-3.16691304. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g29340|LOC_Os03g29340|transcript|LOC_Os03g29340.1|protein_coding|1/9|c.-75C>A|||||395|WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g29340|LOC_Os03g29340|transcript|LOC_Os03g29340.2|protein_coding|1/9|c.-155C>A|||||395|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1095 3 16694934 SNP-3.16693579. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29340|LOC_Os03g29340|transcript|LOC_Os03g29340.1|protein_coding|6/8|c.594-79A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29340|LOC_Os03g29340|transcript|LOC_Os03g29340.2|protein_coding|6/8|c.585-112A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1096 3 16705256 SNP-3.16703901. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16705256A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1097 3 16705740 SNP-3.16704385. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16705740C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1098 3 16705901 SNP-3.16704546. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16705901C>A|||||| GT ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 ./. ./. 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 |
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1099 3 16708508 SNP-3.16707153. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16708508C>A|||||| GT 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1100 3 16709942 SNP-3.16708587. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16709942C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1101 3 16711077 SNP-3.16709722. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16711077A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/1 0/1 0/0 0/1 ./. 0/0 0/1 1/1 1/1 0/1 ./. 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1102 3 16711383 SNP-3.16710028. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16711383C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1103 3 16712609 SNP-3.16711254. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16712609A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1104 3 16713722 SNP-3.16712367. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16713722A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1105 3 16713855 SNP-3.16712500. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16713855C>A|||||| GT 1/1 ./. 0/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1106 3 16713877 SNP-3.16712522. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29350-LOC_Os03g29360|LOC_Os03g29350-LOC_Os03g29360|intergenic_region|LOC_Os03g29350-LOC_Os03g29360|||n.16713877A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/1 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1107 3 16717631 SNP-3.16716276. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29360-LOC_Os03g29370|LOC_Os03g29360-LOC_Os03g29370|intergenic_region|LOC_Os03g29360-LOC_Os03g29370|||n.16717631C>A|||||| GT ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/1 ./. 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1108 3 16718155 SNP-3.16716800. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29360-LOC_Os03g29370|LOC_Os03g29360-LOC_Os03g29370|intergenic_region|LOC_Os03g29360-LOC_Os03g29370|||n.16718155A>G|||||| GT 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1109 3 16719368 SNP-3.16718013. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29360-LOC_Os03g29370|LOC_Os03g29360-LOC_Os03g29370|intergenic_region|LOC_Os03g29360-LOC_Os03g29370|||n.16719368C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1110 3 16724730 SNP-3.16723375. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29370-LOC_Os03g29389|LOC_Os03g29370-LOC_Os03g29389|intergenic_region|LOC_Os03g29370-LOC_Os03g29389|||n.16724730A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1111 3 16726214 SNP-3.16724859. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29370-LOC_Os03g29389|LOC_Os03g29370-LOC_Os03g29389|intergenic_region|LOC_Os03g29370-LOC_Os03g29389|||n.16726214A>G|||||| GT ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1112 3 16726980 SNP-3.16725625. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29370-LOC_Os03g29389|LOC_Os03g29370-LOC_Os03g29389|intergenic_region|LOC_Os03g29370-LOC_Os03g29389|||n.16726980A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1113 3 16733773 SNP-3.16732418. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29370-LOC_Os03g29389|LOC_Os03g29370-LOC_Os03g29389|intergenic_region|LOC_Os03g29370-LOC_Os03g29389|||n.16733773A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1114 3 16736480 SNP-3.16735125. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29370-LOC_Os03g29389|LOC_Os03g29370-LOC_Os03g29389|intergenic_region|LOC_Os03g29370-LOC_Os03g29389|||n.16736480A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/1 0/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. ./. 1/1 0/1 0/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1115 3 16737323 SNP-3.16735968. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29370-LOC_Os03g29389|LOC_Os03g29370-LOC_Os03g29389|intergenic_region|LOC_Os03g29370-LOC_Os03g29389|||n.16737323A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1116 3 16738150 SNP-3.16736795. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29370-LOC_Os03g29389|LOC_Os03g29370-LOC_Os03g29389|intergenic_region|LOC_Os03g29370-LOC_Os03g29389|||n.16738150C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1117 3 16738536 SNP-3.16737181. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29370-LOC_Os03g29389|LOC_Os03g29370-LOC_Os03g29389|intergenic_region|LOC_Os03g29370-LOC_Os03g29389|||n.16738536A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1118 3 16739478 SNP-3.16738123. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29370-LOC_Os03g29389|LOC_Os03g29370-LOC_Os03g29389|intergenic_region|LOC_Os03g29370-LOC_Os03g29389|||n.16739478C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1119 3 16740928 SNP-3.16739573. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29389|LOC_Os03g29389|transcript|LOC_Os03g29389.1|protein_coding|1/2|c.97+52T>C|||||| GT ./. 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1120 3 16741152 SNP-3.16739797. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29389-LOC_Os03g29400|LOC_Os03g29389-LOC_Os03g29400|intergenic_region|LOC_Os03g29389-LOC_Os03g29400|||n.16741152A>G|||||| GT 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1121 3 16741191 SNP-3.16739836. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29389-LOC_Os03g29400|LOC_Os03g29389-LOC_Os03g29400|intergenic_region|LOC_Os03g29389-LOC_Os03g29400|||n.16741191A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1122 3 16742631 SNP-3.16741276. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29389-LOC_Os03g29400|LOC_Os03g29389-LOC_Os03g29400|intergenic_region|LOC_Os03g29389-LOC_Os03g29400|||n.16742631A>G|||||| GT 0/0 0/0 0/1 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1123 3 16745344 SNP-3.16743989. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29389-LOC_Os03g29400|LOC_Os03g29389-LOC_Os03g29400|intergenic_region|LOC_Os03g29389-LOC_Os03g29400|||n.16745344A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1124 3 16746102 SNP-3.16744747. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29389-LOC_Os03g29400|LOC_Os03g29389-LOC_Os03g29400|intergenic_region|LOC_Os03g29389-LOC_Os03g29400|||n.16746102A>G|||||| GT ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1125 3 16747632 SNP-3.16746277. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29389-LOC_Os03g29400|LOC_Os03g29389-LOC_Os03g29400|intergenic_region|LOC_Os03g29389-LOC_Os03g29400|||n.16747632A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1126 3 16749510 SNP-3.16748155. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29410|LOC_Os03g29410|transcript|LOC_Os03g29410.1|protein_coding|5/5|c.1499G>T|p.Cys500Phe|1669/1879|1499/1503|500/500|| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1127 3 16749956 SNP-3.16748601. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29410|LOC_Os03g29410|transcript|LOC_Os03g29410.1|protein_coding|5/5|c.1053G>T|p.Ala351Ala|1223/1879|1053/1503|351/500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1128 3 16753383 SNP-3.16752028. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29410|LOC_Os03g29410|transcript|LOC_Os03g29410.1|protein_coding|1/4|c.583-20G>T|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1129 3 16754512 SNP-3.16753157. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29410-LOC_Os03g29420|LOC_Os03g29410-LOC_Os03g29420|intergenic_region|LOC_Os03g29410-LOC_Os03g29420|||n.16754512A>G|||||| GT 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1130 3 16757648 SNP-3.16756293. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29410-LOC_Os03g29420|LOC_Os03g29410-LOC_Os03g29420|intergenic_region|LOC_Os03g29410-LOC_Os03g29420|||n.16757648A>G|||||| GT ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/1 ./. ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1131 3 16760451 SNP-3.16759096. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29410-LOC_Os03g29420|LOC_Os03g29410-LOC_Os03g29420|intergenic_region|LOC_Os03g29410-LOC_Os03g29420|||n.16760451A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 ./. ./. 0/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1132 3 16763096 SNP-3.16761741. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29410-LOC_Os03g29420|LOC_Os03g29410-LOC_Os03g29420|intergenic_region|LOC_Os03g29410-LOC_Os03g29420|||n.16763096A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/1 0/1 1/1 ./. 0/1 0/1 0/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1133 3 16766719 SNP-3.16765364. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29420-LOC_Os03g29430|LOC_Os03g29420-LOC_Os03g29430|intergenic_region|LOC_Os03g29420-LOC_Os03g29430|||n.16766719A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1134 3 16775485 SNP-3.16774358. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29430-LOC_Os03g29440|LOC_Os03g29430-LOC_Os03g29440|intergenic_region|LOC_Os03g29430-LOC_Os03g29440|||n.16775485A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1135 3 16777112 SNP-3.16775985. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29430-LOC_Os03g29440|LOC_Os03g29430-LOC_Os03g29440|intergenic_region|LOC_Os03g29430-LOC_Os03g29440|||n.16777112A>G|||||| GT ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 ./. 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1136 3 16777397 SNP-3.16776270. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29430-LOC_Os03g29440|LOC_Os03g29430-LOC_Os03g29440|intergenic_region|LOC_Os03g29430-LOC_Os03g29440|||n.16777397A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1137 3 16777506 SNP-3.16776379. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29430-LOC_Os03g29440|LOC_Os03g29430-LOC_Os03g29440|intergenic_region|LOC_Os03g29430-LOC_Os03g29440|||n.16777506A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1138 3 16777607 SNP-3.16776480. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29430-LOC_Os03g29440|LOC_Os03g29430-LOC_Os03g29440|intergenic_region|LOC_Os03g29430-LOC_Os03g29440|||n.16777607C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1139 3 16779274 SNP-3.16778147. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|1/3|c.305A>G|p.Phe102Cys|305/2457|305/2457|102/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1140 3 16779316 SNP-3.16778189. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|1/3|c.347A>G|p.Arg116Arg|347/2457|347/2457|116/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1141 3 16779367 SNP-3.16778240. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|1/3|c.398A>G|p.Phe133Cys|398/2457|398/2457|133/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1142 3 16779761 SNP-3.16778634. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|2/3|c.684A>G|p.His228Gln|684/2457|684/2457|228/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1143 3 16779862 SNP-3.16778735. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|2/3|c.785C>A|p.Ile262Lys|785/2457|785/2457|262/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1144 3 16780004 SNP-3.16778877. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|2/3|c.927A>G|p.Asn309Lys|927/2457|927/2457|309/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1145 3 16780112 SNP-3.16778985. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|2/3|c.1035A>G|p.Cys345Trp|1035/2457|1035/2457|345/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1146 3 16780429 SNP-3.16779302. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.1208A>G|p.Pro403Arg|1208/2457|1208/2457|403/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1147 3 16780471 SNP-3.16779344. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.1250C>A|p.Thr417Lys|1250/2457|1250/2457|417/818|| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1148 3 16780558 SNP-3.16779431. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.1337A>G|p.Thr446Arg|1337/2457|1337/2457|446/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1149 3 16780639 SNP-3.16779512. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.1418A>G|p.Met473Arg|1418/2457|1418/2457|473/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1150 3 16780671 SNP-3.16779544. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.1450C>A|p.Arg484Arg|1450/2457|1450/2457|484/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1151 3 16780741 SNP-3.16779614. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.1520A>G|p.Trp507Trp|1520/2457|1520/2457|507/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/1 ./. ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1152 3 16780915 SNP-3.16779788. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.1694C>A|p.Leu565Gln|1694/2457|1694/2457|565/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1153 3 16781002 SNP-3.16779875. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.1781A>G|p.Arg594Arg|1781/2457|1781/2457|594/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1154 3 16781077 SNP-3.16779950. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.1856A>G|p.Thr619Arg|1856/2457|1856/2457|619/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1155 3 16781257 SNP-3.16780130. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.2036A>G|p.Val679Gly|2036/2457|2036/2457|679/818||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1156 3 16781605 SNP-3.16780478. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29440|LOC_Os03g29440|transcript|LOC_Os03g29440.1|protein_coding|3/3|c.2384A>G|p.Glu795Gly|2384/2457|2384/2457|795/818|| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1157 3 16784936 SNP-3.16783809. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29440-LOC_Os03g29460|LOC_Os03g29440-LOC_Os03g29460|intergenic_region|LOC_Os03g29440-LOC_Os03g29460|||n.16784936C>A|||||| GT 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 |
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1158 3 16789370 SNP-3.16788243. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29460-LOC_Os03g29470|LOC_Os03g29460-LOC_Os03g29470|intergenic_region|LOC_Os03g29460-LOC_Os03g29470|||n.16789370C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1159 3 16791091 SNP-3.16789964. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29460-LOC_Os03g29470|LOC_Os03g29460-LOC_Os03g29470|intergenic_region|LOC_Os03g29460-LOC_Os03g29470|||n.16791091C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1160 3 16791407 SNP-3.16790280. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29460-LOC_Os03g29470|LOC_Os03g29460-LOC_Os03g29470|intergenic_region|LOC_Os03g29460-LOC_Os03g29470|||n.16791407C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1161 3 16793197 SNP-3.16792070. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29460-LOC_Os03g29470|LOC_Os03g29460-LOC_Os03g29470|intergenic_region|LOC_Os03g29460-LOC_Os03g29470|||n.16793197A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1162 3 16796885 SNP-3.16795758. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29470|LOC_Os03g29470|transcript|LOC_Os03g29470.1|protein_coding|1/1|c.340-1744A>G|||||| GT 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1163 3 16798362 SNP-3.16797235. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29470|LOC_Os03g29470|transcript|LOC_Os03g29470.1|protein_coding|1/1|c.340-267A>G|||||| GT 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 |
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1164 3 16801060 SNP-3.16799933. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29470-LOC_Os03g29480|LOC_Os03g29470-LOC_Os03g29480|intergenic_region|LOC_Os03g29470-LOC_Os03g29480|||n.16801060A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 |
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1165 3 16807398 SNP-3.16806271. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29480-LOC_Os03g29490|LOC_Os03g29480-LOC_Os03g29490|intergenic_region|LOC_Os03g29480-LOC_Os03g29490|||n.16807398C>A|||||| GT 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1166 3 16807958 SNP-3.16806831. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29480-LOC_Os03g29490|LOC_Os03g29480-LOC_Os03g29490|intergenic_region|LOC_Os03g29480-LOC_Os03g29490|||n.16807958A>G|||||| GT 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1167 3 16811339 SNP-3.16810212. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29490|LOC_Os03g29490|transcript|LOC_Os03g29490.1|protein_coding|3/4|c.214A>G|p.Phe72Val|214/387|214/387|72/128||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1168 3 16817640 SNP-3.16816513. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29510|LOC_Os03g29510|transcript|LOC_Os03g29510.1|protein_coding|1/1|c.58+273T>C|||||| GT 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1169 3 16817724 SNP-3.16816597. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29510|LOC_Os03g29510|transcript|LOC_Os03g29510.1|protein_coding|1/1|c.58+189T>C|||||| GT 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1170 3 16818214 SNP-3.16817087. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29510-LOC_Os03g29520|LOC_Os03g29510-LOC_Os03g29520|intergenic_region|LOC_Os03g29510-LOC_Os03g29520|||n.16818214C>A|||||| GT 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1171 3 16820497 SNP-3.16819370. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29510-LOC_Os03g29520|LOC_Os03g29510-LOC_Os03g29520|intergenic_region|LOC_Os03g29510-LOC_Os03g29520|||n.16820497A>G|||||| GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1172 3 16820716 SNP-3.16819589. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29510-LOC_Os03g29520|LOC_Os03g29510-LOC_Os03g29520|intergenic_region|LOC_Os03g29510-LOC_Os03g29520|||n.16820716A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1173 3 16820765 SNP-3.16819638. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29510-LOC_Os03g29520|LOC_Os03g29510-LOC_Os03g29520|intergenic_region|LOC_Os03g29510-LOC_Os03g29520|||n.16820765C>A|||||| GT 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1174 3 16822183 SNP-3.16821056. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29520|LOC_Os03g29520|transcript|LOC_Os03g29520.1|protein_coding|10/10|c.4476G>T|p.Ile1492Ile|4476/5769|4476/5769|1492/1922||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 |
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1175 3 16822258 SNP-3.16821131. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29520|LOC_Os03g29520|transcript|LOC_Os03g29520.1|protein_coding|10/10|c.4401G>T|p.Arg1467Ser|4401/5769|4401/5769|1467/1922||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1176 3 16822481 SNP-3.16821354. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29520|LOC_Os03g29520|transcript|LOC_Os03g29520.1|protein_coding|10/10|c.4178T>C|p.Asp1393Ala|4178/5769|4178/5769|1393/1922||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1177 3 16822667 SNP-3.16821540. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29520|LOC_Os03g29520|transcript|LOC_Os03g29520.1|protein_coding|9/9|c.4124-132T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1178 3 16824914 SNP-3.16823787. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29520|LOC_Os03g29520|transcript|LOC_Os03g29520.1|protein_coding|6/10|c.3455G>T|p.His1152Leu|3455/5769|3455/5769|1152/1922||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1179 3 16826960 SNP-3.16825833. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29520|LOC_Os03g29520|transcript|LOC_Os03g29520.1|protein_coding|2/10|c.2018T>C|p.Val673Ala|2018/5769|2018/5769|673/1922|| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1180 3 16827601 SNP-3.16826474. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29520|LOC_Os03g29520|transcript|LOC_Os03g29520.1|protein_coding|1/10|c.1527G>T|p.Asp509Asp|1527/5769|1527/5769|509/1922||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1181 3 16830403 SNP-3.16829276. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29520-LOC_Os03g29540|LOC_Os03g29520-LOC_Os03g29540|intergenic_region|LOC_Os03g29520-LOC_Os03g29540|||n.16830403A>G|||||| GT ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1182 3 16833880 SNP-3.16832753. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29520-LOC_Os03g29540|LOC_Os03g29520-LOC_Os03g29540|intergenic_region|LOC_Os03g29520-LOC_Os03g29540|||n.16833880A>G|||||| GT 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/1 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/0 ./. 0/0 0/1 ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/1 ./. 0/1 ./. 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1183 3 16834732 SNP-3.16833605. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29520-LOC_Os03g29540|LOC_Os03g29520-LOC_Os03g29540|intergenic_region|LOC_Os03g29520-LOC_Os03g29540|||n.16834732A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 0/1 ./. 1/1 0/1 ./. 0/1 ./. ./. 1/1 ./. ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. ./. ./. ./. 0/1 0/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1184 3 16834840 SNP-3.16833713. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29520-LOC_Os03g29540|LOC_Os03g29520-LOC_Os03g29540|intergenic_region|LOC_Os03g29520-LOC_Os03g29540|||n.16834840C>A|||||| GT 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1185 3 16838056 SNP-3.16836929. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g29540|LOC_Os03g29540|transcript|LOC_Os03g29540.2|protein_coding|1/1|c.-76T>C|||||76|WARNING_REF_DOES_NOT_MATCH_GENOME,G|intron_variant|MODIFIER|LOC_Os03g29540|LOC_Os03g29540|transcript|LOC_Os03g29540.1|protein_coding|1/1|c.-49-27T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g29540|LOC_Os03g29540|transcript|LOC_Os03g29540.3|protein_coding|1/1|c.-49-27T>C|||||| GT ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1186 3 16840375 SNP-3.16839248. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g29540|LOC_Os03g29540|transcript|LOC_Os03g29540.2|protein_coding|1/1|c.-2395G>T|||||2395|WARNING_REF_DOES_NOT_MATCH_GENOME,A|intron_variant|MODIFIER|LOC_Os03g29540|LOC_Os03g29540|transcript|LOC_Os03g29540.3|protein_coding|1/1|c.-50+202G>T|||||| GT ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1187 3 16841473 SNP-3.16840346. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29550|LOC_Os03g29550|transcript|LOC_Os03g29550.1|protein_coding|3/3|c.719T>C|p.Cys240Ser|719/912|719/912|240/303||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1188 3 16841580 SNP-3.16840453. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29550|LOC_Os03g29550|transcript|LOC_Os03g29550.1|protein_coding|2/2|c.677-65G>T|||||| GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1189 3 16842371 SNP-3.16841244. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29550|LOC_Os03g29550|transcript|LOC_Os03g29550.1|protein_coding|1/3|c.403T>C|p.Gly135Arg|403/912|403/912|135/303||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/1 0/1 ./. 0/1 0/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1190 3 16842419 SNP-3.16841292. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29550|LOC_Os03g29550|transcript|LOC_Os03g29550.1|protein_coding|1/3|c.355G>T|p.Val119Leu|355/912|355/912|119/303|| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1191 3 16842546 SNP-3.16841419. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29550|LOC_Os03g29550|transcript|LOC_Os03g29550.1|protein_coding|1/3|c.228T>C|p.Asp76Asp|228/912|228/912|76/303||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1192 3 16842798 SNP-3.16841671. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29550-LOC_Os03g29560|LOC_Os03g29550-LOC_Os03g29560|intergenic_region|LOC_Os03g29550-LOC_Os03g29560|||n.16842798A>G|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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1193 3 16843300 SNP-3.16842173. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29550-LOC_Os03g29560|LOC_Os03g29550-LOC_Os03g29560|intergenic_region|LOC_Os03g29550-LOC_Os03g29560|||n.16843300A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1194 3 16855971 SNP-3.16854844. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29560-LOC_Os03g29570|LOC_Os03g29560-LOC_Os03g29570|intergenic_region|LOC_Os03g29560-LOC_Os03g29570|||n.16855971A>G|||||| GT 0/0 0/0 0/1 0/0 ./. 1/1 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1195 3 16856289 SNP-3.16855162. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29560-LOC_Os03g29570|LOC_Os03g29560-LOC_Os03g29570|intergenic_region|LOC_Os03g29560-LOC_Os03g29570|||n.16856289A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1196 3 16856475 SNP-3.16855348. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29560-LOC_Os03g29570|LOC_Os03g29560-LOC_Os03g29570|intergenic_region|LOC_Os03g29560-LOC_Os03g29570|||n.16856475C>A|||||| GT 1/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 1/1 ./. ./. 0/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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1197 3 16861320 SNP-3.16860193. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29570|LOC_Os03g29570|transcript|LOC_Os03g29570.1|protein_coding|3/6|c.184+254G>T|||||| GT 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1198 3 16861617 SNP-3.16860490. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29570|LOC_Os03g29570|transcript|LOC_Os03g29570.1|protein_coding|3/7|c.141T>C|p.Arg47Arg|141/654|141/654|47/217|| GT 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 |
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1199 3 16861796 SNP-3.16860669. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29570|LOC_Os03g29570|transcript|LOC_Os03g29570.1|protein_coding|2/6|c.76-114G>T|||||| GT ./. 0/0 ./. ./. 1/1 ./. 0/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1200 3 16864273 SNP-3.16863146. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|1/6|c.339A>G|p.Leu113Leu|339/1206|339/1206|113/401||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1201 3 16865191 SNP-3.16864064. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|2/5|c.717+111A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1202 3 16865836 SNP-3.16864709. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|2/5|c.718-58C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1203 3 16866568 SNP-3.16865441. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|3/5|c.846+546A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1204 3 16867052 SNP-3.16865925. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|3/5|c.847-413A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 0/1 ./. ./. 0/1 0/1 0/1 ./. ./. 0/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 ./. 1/1 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. 1/1 ./. 0/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 ./. 0/1 ./. ./. ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1205 3 16867616 SNP-3.16866489. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|4/5|c.915+83A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1206 3 16867809 SNP-3.16866682. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|4/5|c.915+276A>G|||||| GT 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1207 3 16868418 SNP-3.16867291. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|5/5|c.1116+49A>G|||||| GT 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1208 3 16868554 SNP-3.16867427. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|5/5|c.1116+185C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1209 3 16869013 SNP-3.16867886. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29584|LOC_Os03g29584|transcript|LOC_Os03g29584.1|protein_coding|6/6|c.1171A>G|p.Val391Val|1171/1206|1171/1206|391/401||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1210 3 16869049 SNP-3.16867922. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29584-LOC_Os03g29600|LOC_Os03g29584-LOC_Os03g29600|intergenic_region|LOC_Os03g29584-LOC_Os03g29600|||n.16869049C>A|||||| GT 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1211 3 16869162 SNP-3.16868035. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29584-LOC_Os03g29600|LOC_Os03g29584-LOC_Os03g29600|intergenic_region|LOC_Os03g29584-LOC_Os03g29600|||n.16869162A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1212 3 16869256 SNP-3.16868129. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29584-LOC_Os03g29600|LOC_Os03g29584-LOC_Os03g29600|intergenic_region|LOC_Os03g29584-LOC_Os03g29600|||n.16869256A>G|||||| GT 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1213 3 16869645 SNP-3.16868518. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29584-LOC_Os03g29600|LOC_Os03g29584-LOC_Os03g29600|intergenic_region|LOC_Os03g29584-LOC_Os03g29600|||n.16869645C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1214 3 16873120 SNP-3.16871993. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29584-LOC_Os03g29600|LOC_Os03g29584-LOC_Os03g29600|intergenic_region|LOC_Os03g29584-LOC_Os03g29600|||n.16873120C>A|||||| GT 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1215 3 16873753 SNP-3.16872626. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29600|LOC_Os03g29600|transcript|LOC_Os03g29600.1|protein_coding|1/9|c.14A>G|p.Gly5Gly|14/2397|14/2397|5/798||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1216 3 16874793 SNP-3.16873666. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29600|LOC_Os03g29600|transcript|LOC_Os03g29600.1|protein_coding|3/8|c.844-26C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1217 3 16874827 SNP-3.16873700. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29600|LOC_Os03g29600|transcript|LOC_Os03g29600.1|protein_coding|4/9|c.852C>A|p.Pro284Pro|852/2397|852/2397|284/798||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1218 3 16875286 SNP-3.16874159. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29600|LOC_Os03g29600|transcript|LOC_Os03g29600.1|protein_coding|5/9|c.1215A>G|p.Leu405Leu|1215/2397|1215/2397|405/798||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1219 3 16876042 SNP-3.16874915. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29600|LOC_Os03g29600|transcript|LOC_Os03g29600.1|protein_coding|7/9|c.1578A>G|p.Pro526Pro|1578/2397|1578/2397|526/798||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 0/1 0/1 ./. 1/1 ./. 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1220 3 16876766 SNP-3.16875639. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29600|LOC_Os03g29600|transcript|LOC_Os03g29600.1|protein_coding|9/9|c.2185C>A|p.Thr729Thr|2185/2397|2185/2397|729/798||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1221 3 16877583 SNP-3.16876456. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29600-LOC_Os03g29614|LOC_Os03g29600-LOC_Os03g29614|intergenic_region|LOC_Os03g29600-LOC_Os03g29614|||n.16877583A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1222 3 16878653 SNP-3.16877526. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29600-LOC_Os03g29614|LOC_Os03g29600-LOC_Os03g29614|intergenic_region|LOC_Os03g29600-LOC_Os03g29614|||n.16878653C>A|||||| GT 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1223 3 16879736 SNP-3.16878609. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g29614|LOC_Os03g29614|transcript|LOC_Os03g29614.1|protein_coding|3/3|c.*54G>T|||||54|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1224 3 16881068 SNP-3.16879941. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29614|LOC_Os03g29614|transcript|LOC_Os03g29614.1|protein_coding|2/2|c.264-576G>T|||||| GT 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1225 3 16882354 SNP-3.16881227. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29614|LOC_Os03g29614|transcript|LOC_Os03g29614.1|protein_coding|2/2|c.263+861T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/1 1/1 0/0 0/1 0/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/1 0/0 0/1 1/1 0/0 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/1 ./. ./. 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/1 0/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 1/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1226 3 16884674 SNP-3.16883547. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29614-LOC_Os03g29630|LOC_Os03g29614-LOC_Os03g29630|intergenic_region|LOC_Os03g29614-LOC_Os03g29630|||n.16884674C>A|||||| GT ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 |
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1227 3 16885632 SNP-3.16884505. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29614-LOC_Os03g29630|LOC_Os03g29614-LOC_Os03g29630|intergenic_region|LOC_Os03g29614-LOC_Os03g29630|||n.16885632C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1228 3 16887221 SNP-3.16886094. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29614-LOC_Os03g29630|LOC_Os03g29614-LOC_Os03g29630|intergenic_region|LOC_Os03g29614-LOC_Os03g29630|||n.16887221C>A|||||| GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1229 3 16887442 SNP-3.16886315. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29614-LOC_Os03g29630|LOC_Os03g29614-LOC_Os03g29630|intergenic_region|LOC_Os03g29614-LOC_Os03g29630|||n.16887442A>G|||||| GT 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/1 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 ./. 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1230 3 16887944 SNP-3.16886817. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29614-LOC_Os03g29630|LOC_Os03g29614-LOC_Os03g29630|intergenic_region|LOC_Os03g29614-LOC_Os03g29630|||n.16887944C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1231 3 16894190 SNP-3.16893063. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29630-LOC_Os03g29650|LOC_Os03g29630-LOC_Os03g29650|intergenic_region|LOC_Os03g29630-LOC_Os03g29650|||n.16894190A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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1232 3 16894727 SNP-3.16893600. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29630-LOC_Os03g29650|LOC_Os03g29630-LOC_Os03g29650|intergenic_region|LOC_Os03g29630-LOC_Os03g29650|||n.16894727C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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1233 3 16901615 SNP-3.16900488. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29630-LOC_Os03g29650|LOC_Os03g29630-LOC_Os03g29650|intergenic_region|LOC_Os03g29630-LOC_Os03g29650|||n.16901615A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1234 3 16906662 SNP-3.16905535. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29650|LOC_Os03g29650|transcript|LOC_Os03g29650.1|protein_coding|4/6|c.2082+215A>G|||||| GT 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/1 0/1 1/1 ./. 1/1 ./. ./. 0/0 0/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1235 3 16907231 SNP-3.16906104. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29650|LOC_Os03g29650|transcript|LOC_Os03g29650.1|protein_coding|5/7|c.2226C>A|p.Ala742Ala|2226/4980|2226/4980|742/1659||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1236 3 16907925 SNP-3.16906798. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29650|LOC_Os03g29650|transcript|LOC_Os03g29650.1|protein_coding|5/6|c.2791-60A>G|||||| GT 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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1237 3 16908677 SNP-3.16907550. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29650|LOC_Os03g29650|transcript|LOC_Os03g29650.1|protein_coding|6/7|c.3483C>A|p.Arg1161Arg|3483/4980|3483/4980|1161/1659|| GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1238 3 16908694 SNP-3.16907567. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29650|LOC_Os03g29650|transcript|LOC_Os03g29650.1|protein_coding|6/7|c.3500A>G|p.Gly1167Gly|3500/4980|3500/4980|1167/1659||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1239 3 16911094 SNP-3.16909967. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29660|LOC_Os03g29660|transcript|LOC_Os03g29660.1|protein_coding|6/7|c.1983G>T|p.Leu661Leu|1983/2472|1983/2472|661/823||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1240 3 16912862 SNP-3.16911735. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29660|LOC_Os03g29660|transcript|LOC_Os03g29660.1|protein_coding|1/7|c.594T>C|p.Ala198Ala|594/2472|594/2472|198/823||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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1241 3 16913768 SNP-3.16912641. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29660-LOC_Os03g29680|LOC_Os03g29660-LOC_Os03g29680|intergenic_region|LOC_Os03g29660-LOC_Os03g29680|||n.16913768C>A|||||| GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1242 3 16913889 SNP-3.16912762. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29660-LOC_Os03g29680|LOC_Os03g29660-LOC_Os03g29680|intergenic_region|LOC_Os03g29660-LOC_Os03g29680|||n.16913889C>A|||||| GT ./. 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1243 3 16916409 SNP-3.16915282. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29660-LOC_Os03g29680|LOC_Os03g29660-LOC_Os03g29680|intergenic_region|LOC_Os03g29660-LOC_Os03g29680|||n.16916409A>G|||||| GT 0/0 0/1 ./. 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1244 3 16918539 SNP-3.16917412. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29660-LOC_Os03g29680|LOC_Os03g29660-LOC_Os03g29680|intergenic_region|LOC_Os03g29660-LOC_Os03g29680|||n.16918539A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1245 3 16922757 SNP-3.16921630. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29680-LOC_Os03g29690|LOC_Os03g29680-LOC_Os03g29690|intergenic_region|LOC_Os03g29680-LOC_Os03g29690|||n.16922757A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/1 1/1 0/0 0/1 ./. 1/1 0/0 ./. 0/1 ./. 0/0 0/1 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 0/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 ./. 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 ./. 0/1 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1246 3 16922834 SNP-3.16921707. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29680-LOC_Os03g29690|LOC_Os03g29680-LOC_Os03g29690|intergenic_region|LOC_Os03g29680-LOC_Os03g29690|||n.16922834C>A|||||| GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1247 3 16925079 SNP-3.16923952. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29690|LOC_Os03g29690|transcript|LOC_Os03g29690.1|protein_coding|1/1|c.336+42T>C|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1248 3 16926996 SNP-3.16925869. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29690-LOC_Os03g29710|LOC_Os03g29690-LOC_Os03g29710|intergenic_region|LOC_Os03g29690-LOC_Os03g29710|||n.16926996C>A|||||| GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 0/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/1 0/1 0/1 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1249 3 16928902 SNP-3.16927775. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29690-LOC_Os03g29710|LOC_Os03g29690-LOC_Os03g29710|intergenic_region|LOC_Os03g29690-LOC_Os03g29710|||n.16928902C>A|||||| GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1250 3 16931092 SNP-3.16929965. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29690-LOC_Os03g29710|LOC_Os03g29690-LOC_Os03g29710|intergenic_region|LOC_Os03g29690-LOC_Os03g29710|||n.16931092C>A|||||| GT 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/1 0/1 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1251 3 16931262 SNP-3.16930135. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29690-LOC_Os03g29710|LOC_Os03g29690-LOC_Os03g29710|intergenic_region|LOC_Os03g29690-LOC_Os03g29710|||n.16931262C>A|||||| GT 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1252 3 16936518 SNP-3.16935391. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29710-LOC_Os03g29730|LOC_Os03g29710-LOC_Os03g29730|intergenic_region|LOC_Os03g29710-LOC_Os03g29730|||n.16936518A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1253 3 16936542 SNP-3.16935415. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29710-LOC_Os03g29730|LOC_Os03g29710-LOC_Os03g29730|intergenic_region|LOC_Os03g29710-LOC_Os03g29730|||n.16936542A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1254 3 16936990 SNP-3.16935863. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29710-LOC_Os03g29730|LOC_Os03g29710-LOC_Os03g29730|intergenic_region|LOC_Os03g29710-LOC_Os03g29730|||n.16936990A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1255 3 16941790 SNP-3.16940663. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29740|LOC_Os03g29740|transcript|LOC_Os03g29740.1|protein_coding|2/3|c.58+415A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1256 3 16944235 SNP-3.16943108. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29740-LOC_Os03g29750|LOC_Os03g29740-LOC_Os03g29750|intergenic_region|LOC_Os03g29740-LOC_Os03g29750|||n.16944235A>G|||||| GT ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1257 3 16945031 SNP-3.16943904. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29740-LOC_Os03g29750|LOC_Os03g29740-LOC_Os03g29750|intergenic_region|LOC_Os03g29740-LOC_Os03g29750|||n.16945031C>A|||||| GT 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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1258 3 16946305 SNP-3.16945178. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29740-LOC_Os03g29750|LOC_Os03g29740-LOC_Os03g29750|intergenic_region|LOC_Os03g29740-LOC_Os03g29750|||n.16946305C>A|||||| GT 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1259 3 16946616 SNP-3.16945489. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29740-LOC_Os03g29750|LOC_Os03g29740-LOC_Os03g29750|intergenic_region|LOC_Os03g29740-LOC_Os03g29750|||n.16946616C>A|||||| GT 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1260 3 16948390 SNP-3.16947263. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29740-LOC_Os03g29750|LOC_Os03g29740-LOC_Os03g29750|intergenic_region|LOC_Os03g29740-LOC_Os03g29750|||n.16948390C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1261 3 16957271 SNP-3.16956144. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29750-LOC_Os03g29760|LOC_Os03g29750-LOC_Os03g29760|intergenic_region|LOC_Os03g29750-LOC_Os03g29760|||n.16957271A>G|||||| GT 0/0 0/0 0/1 1/1 0/0 0/1 0/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1262 3 16958073 SNP-3.16956946. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29750-LOC_Os03g29760|LOC_Os03g29750-LOC_Os03g29760|intergenic_region|LOC_Os03g29750-LOC_Os03g29760|||n.16958073A>G|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1263 3 16958180 SNP-3.16957053. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29750-LOC_Os03g29760|LOC_Os03g29750-LOC_Os03g29760|intergenic_region|LOC_Os03g29750-LOC_Os03g29760|||n.16958180A>G|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1264 3 16959242 SNP-3.16958115. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29750-LOC_Os03g29760|LOC_Os03g29750-LOC_Os03g29760|intergenic_region|LOC_Os03g29750-LOC_Os03g29760|||n.16959242C>A|||||| GT 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1265 3 16964467 SNP-3.16963340. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29750-LOC_Os03g29760|LOC_Os03g29750-LOC_Os03g29760|intergenic_region|LOC_Os03g29750-LOC_Os03g29760|||n.16964467A>G|||||| GT 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1266 3 16965256 SNP-3.16964129. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.1|protein_coding|1/7|c.-194C>A|||||1674|WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.3|protein_coding|1/7|c.-189C>A|||||1674|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/1 ./. 0/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1267 3 16966085 SNP-3.16964958. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.1|protein_coding|1/6|c.-42+677C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.3|protein_coding|1/6|c.-37+677C>A|||||| GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1268 3 16966140 SNP-3.16965013. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.1|protein_coding|1/6|c.-42+732A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.3|protein_coding|1/6|c.-37+732A>G|||||| GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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1269 3 16966275 SNP-3.16965148. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.1|protein_coding|1/6|c.-41-614A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.3|protein_coding|1/6|c.-36-619A>G|||||| GT 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1270 3 16967089 SNP-3.16965962. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.1|protein_coding|3/7|c.72C>A|p.Leu24Leu|336/1675|72/954|24/317||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.3|protein_coding|3/7|c.72C>A|p.Leu24Leu|331/1655|72/939|24/312||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.2|protein_coding|2/6|c.72C>A|p.Leu24Leu|416/1755|72/954|24/317||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1271 3 16967136 SNP-3.16966009. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.1|protein_coding|3/7|c.119A>G|p.Asp40Gly|383/1675|119/954|40/317||,G|missense_variant|MODERATE|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.3|protein_coding|3/7|c.119A>G|p.Asp40Gly|378/1655|119/939|40/312||,G|missense_variant|MODERATE|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.2|protein_coding|2/6|c.119A>G|p.Asp40Gly|463/1755|119/954|40/317|| GT ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/1 ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1272 3 16968739 SNP-3.16967612. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.1|protein_coding|3/6|c.218-129C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.3|protein_coding|3/6|c.218-144C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29760|LOC_Os03g29760|transcript|LOC_Os03g29760.2|protein_coding|2/5|c.218-129C>A|||||| GT 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1273 3 16972073 SNP-3.16970946. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29760-LOC_Os03g29770|LOC_Os03g29760-LOC_Os03g29770|intergenic_region|LOC_Os03g29760-LOC_Os03g29770|||n.16972073A>G|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1274 3 16972738 SNP-3.16971611. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29760-LOC_Os03g29770|LOC_Os03g29760-LOC_Os03g29770|intergenic_region|LOC_Os03g29760-LOC_Os03g29770|||n.16972738C>A|||||| GT 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1275 3 16975586 SNP-3.16974459. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29770|LOC_Os03g29770|transcript|LOC_Os03g29770.1|protein_coding|1/1|c.27T>C|p.Ser9Ser|150/962|27/477|9/158||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 ./. 1/1 ./. 0/0 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 ./. ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1276 3 16976297 SNP-3.16975170. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29770-LOC_Os03g29790|LOC_Os03g29770-LOC_Os03g29790|intergenic_region|LOC_Os03g29770-LOC_Os03g29790|||n.16976297A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1277 3 16976839 SNP-3.16975712. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29770-LOC_Os03g29790|LOC_Os03g29770-LOC_Os03g29790|intergenic_region|LOC_Os03g29770-LOC_Os03g29790|||n.16976839A>G|||||| GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1278 3 16978308 SNP-3.16977181. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29770-LOC_Os03g29790|LOC_Os03g29770-LOC_Os03g29790|intergenic_region|LOC_Os03g29770-LOC_Os03g29790|||n.16978308A>G|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/1 0/1 ./. ./. 1/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1279 3 16978380 SNP-3.16977253. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29770-LOC_Os03g29790|LOC_Os03g29770-LOC_Os03g29790|intergenic_region|LOC_Os03g29770-LOC_Os03g29790|||n.16978380A>G|||||| GT 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1280 3 16991576 SNP-3.16990449. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29790-LOC_Os03g29810|LOC_Os03g29790-LOC_Os03g29810|intergenic_region|LOC_Os03g29790-LOC_Os03g29810|||n.16991576C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1281 3 16993049 SNP-3.16991922. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29790-LOC_Os03g29810|LOC_Os03g29790-LOC_Os03g29810|intergenic_region|LOC_Os03g29790-LOC_Os03g29810|||n.16993049C>A|||||| GT 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1282 3 16993369 SNP-3.16992242. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29790-LOC_Os03g29810|LOC_Os03g29790-LOC_Os03g29810|intergenic_region|LOC_Os03g29790-LOC_Os03g29810|||n.16993369C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1283 3 16994927 SNP-3.16993800. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29810|LOC_Os03g29810|transcript|LOC_Os03g29810.1|protein_coding|2/8|c.104-312A>G|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1284 3 16998202 SNP-3.16997075. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29810-LOC_Os03g29830|LOC_Os03g29810-LOC_Os03g29830|intergenic_region|LOC_Os03g29810-LOC_Os03g29830|||n.16998202A>G|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1285 3 17000857 SNP-3.16999730. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29830|LOC_Os03g29830|transcript|LOC_Os03g29830.1|protein_coding|2/3|c.289A>G|p.Glu97Glu|354/1095|289/537|97/178||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1286 3 17003965 SNP-3.17002838. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29830-LOC_Os03g29850|LOC_Os03g29830-LOC_Os03g29850|intergenic_region|LOC_Os03g29830-LOC_Os03g29850|||n.17003965A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1287 3 17006312 SNP-3.17005185. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29830-LOC_Os03g29850|LOC_Os03g29830-LOC_Os03g29850|intergenic_region|LOC_Os03g29830-LOC_Os03g29850|||n.17006312A>G|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1288 3 17006838 SNP-3.17005711. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29830-LOC_Os03g29850|LOC_Os03g29830-LOC_Os03g29850|intergenic_region|LOC_Os03g29830-LOC_Os03g29850|||n.17006838A>G|||||| GT 0/0 0/1 0/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 ./. 1/1 0/1 ./. 0/1 0/0 0/0 ./. 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 0/0 ./. ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. ./. ./. 1/1 0/1 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1289 3 17006865 SNP-3.17005738. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29830-LOC_Os03g29850|LOC_Os03g29830-LOC_Os03g29850|intergenic_region|LOC_Os03g29830-LOC_Os03g29850|||n.17006865A>G|||||| GT 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1290 3 17006874 SNP-3.17005747. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29830-LOC_Os03g29850|LOC_Os03g29830-LOC_Os03g29850|intergenic_region|LOC_Os03g29830-LOC_Os03g29850|||n.17006874A>G|||||| GT 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1291 3 17011979 SNP-3.17010852. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29850-LOC_Os03g29864|LOC_Os03g29850-LOC_Os03g29864|intergenic_region|LOC_Os03g29850-LOC_Os03g29864|||n.17011979C>A|||||| GT ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1292 3 17012377 SNP-3.17011250. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29850-LOC_Os03g29864|LOC_Os03g29850-LOC_Os03g29864|intergenic_region|LOC_Os03g29850-LOC_Os03g29864|||n.17012377C>A|||||| GT ./. ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1293 3 17013438 SNP-3.17012311. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29850-LOC_Os03g29864|LOC_Os03g29850-LOC_Os03g29864|intergenic_region|LOC_Os03g29850-LOC_Os03g29864|||n.17013438C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1294 3 17013512 SNP-3.17012385. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29850-LOC_Os03g29864|LOC_Os03g29850-LOC_Os03g29864|intergenic_region|LOC_Os03g29850-LOC_Os03g29864|||n.17013512A>G|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1295 3 17013703 SNP-3.17012576. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29850-LOC_Os03g29864|LOC_Os03g29850-LOC_Os03g29864|intergenic_region|LOC_Os03g29850-LOC_Os03g29864|||n.17013703C>A|||||| GT 1/1 ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1296 3 17015006 SNP-3.17013879. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29864|LOC_Os03g29864|transcript|LOC_Os03g29864.1|protein_coding|8/9|c.3883T>C|p.Asp1295His|3883/4446|3883/4446|1295/1481||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1297 3 17019074 SNP-3.17017947. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29864|LOC_Os03g29864|transcript|LOC_Os03g29864.1|protein_coding|4/8|c.1337-97T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1298 3 17019476 SNP-3.17018349. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29864|LOC_Os03g29864|transcript|LOC_Os03g29864.1|protein_coding|4/8|c.1336+211T>C|||||| GT 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1299 3 17020461 SNP-3.17019334. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29864|LOC_Os03g29864|transcript|LOC_Os03g29864.1|protein_coding|2/8|c.1231+37G>T|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1300 3 17022129 SNP-3.17021002. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29864|LOC_Os03g29864|transcript|LOC_Os03g29864.1|protein_coding|1/9|c.444G>T|p.Glu148Asp|444/4446|444/4446|148/1481||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1301 3 17023931 SNP-3.17022804. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29864-LOC_Os03g29880|LOC_Os03g29864-LOC_Os03g29880|intergenic_region|LOC_Os03g29864-LOC_Os03g29880|||n.17023931A>G|||||| GT 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 0/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 0/1 ./. 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 ./. ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/1 1/1 ./. ./. 0/1 1/1 ./. ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/1 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1302 3 17027034 SNP-3.17025907. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29880|LOC_Os03g29880|transcript|LOC_Os03g29880.1|protein_coding|3/9|c.1430T>C|p.Pro477Pro|1430/2889|1430/2889|477/962||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/1 ./. 0/1 ./. 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/1 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1303 3 17032121 SNP-3.17030994. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29900|LOC_Os03g29900|transcript|LOC_Os03g29900.1|protein_coding|4/4|c.1789T>C|p.Gly597Arg|1789/1995|1789/1995|597/664||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1304 3 17032918 SNP-3.17031791. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29900|LOC_Os03g29900|transcript|LOC_Os03g29900.1|protein_coding|4/4|c.992G>T|p.Arg331Leu|992/1995|992/1995|331/664|| GT ./. 0/0 ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1305 3 17034429 SNP-3.17033302. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29900|LOC_Os03g29900|transcript|LOC_Os03g29900.1|protein_coding|2/3|c.207+280T>C|||||| GT 1/1 0/1 ./. 0/0 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1306 3 17035092 SNP-3.17033965. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29900|LOC_Os03g29900|transcript|LOC_Os03g29900.1|protein_coding|1/3|c.98+37G>T|||||| GT 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 ./. 0/1 0/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1307 3 17035251 SNP-3.17034124. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29900-LOC_Os03g29910|LOC_Os03g29900-LOC_Os03g29910|intergenic_region|LOC_Os03g29900-LOC_Os03g29910|||n.17035251C>A|||||| GT 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1308 3 17035826 SNP-3.17034699. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29900-LOC_Os03g29910|LOC_Os03g29900-LOC_Os03g29910|intergenic_region|LOC_Os03g29900-LOC_Os03g29910|||n.17035826A>G|||||| GT 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 ./. 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1309 3 17035928 SNP-3.17034801. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29900-LOC_Os03g29910|LOC_Os03g29900-LOC_Os03g29910|intergenic_region|LOC_Os03g29900-LOC_Os03g29910|||n.17035928A>G|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1310 3 17036502 SNP-3.17035375. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29900-LOC_Os03g29910|LOC_Os03g29900-LOC_Os03g29910|intergenic_region|LOC_Os03g29900-LOC_Os03g29910|||n.17036502C>A|||||| GT 0/0 0/1 ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1311 3 17036731 SNP-3.17035604. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29900-LOC_Os03g29910|LOC_Os03g29900-LOC_Os03g29910|intergenic_region|LOC_Os03g29900-LOC_Os03g29910|||n.17036731A>G|||||| GT 1/1 0/1 ./. 0/1 0/0 1/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 ./. ./. 0/0 ./. 0/1 ./. 0/0 ./. 0/1 0/0 ./. ./. 0/1 0/1 ./. 0/1 0/1 0/1 0/0 0/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1312 3 17037461 SNP-3.17036334. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29900-LOC_Os03g29910|LOC_Os03g29900-LOC_Os03g29910|intergenic_region|LOC_Os03g29900-LOC_Os03g29910|||n.17037461A>G|||||| GT 1/1 0/1 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1313 3 17039258 SNP-3.17038131. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29900-LOC_Os03g29910|LOC_Os03g29900-LOC_Os03g29910|intergenic_region|LOC_Os03g29900-LOC_Os03g29910|||n.17039258C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1314 3 17041239 SNP-3.17040112. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g29910|LOC_Os03g29910|transcript|LOC_Os03g29910.2|protein_coding|1/2|c.-1650C>A|||||1650|WARNING_REF_DOES_NOT_MATCH_GENOME,A|intron_variant|MODIFIER|LOC_Os03g29910|LOC_Os03g29910|transcript|LOC_Os03g29910.1|protein_coding|1/2|c.64+1601C>A|||||| GT 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1315 3 17046414 SNP-3.17045287. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29910-LOC_Os03g29920|LOC_Os03g29910-LOC_Os03g29920|intergenic_region|LOC_Os03g29910-LOC_Os03g29920|||n.17046414A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1316 3 17056800 SNP-3.17055613ct. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29930-LOC_Os03g29940|LOC_Os03g29930-LOC_Os03g29940|intergenic_region|LOC_Os03g29930-LOC_Os03g29940|||n.17056800A>G|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1317 3 17057151 SNP-3.17055964. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29930-LOC_Os03g29940|LOC_Os03g29930-LOC_Os03g29940|intergenic_region|LOC_Os03g29930-LOC_Os03g29940|||n.17057151C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1318 3 17057230 SNP-3.17056043. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29930-LOC_Os03g29940|LOC_Os03g29930-LOC_Os03g29940|intergenic_region|LOC_Os03g29930-LOC_Os03g29940|||n.17057230C>A|||||| GT 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1319 3 17059410 SNP-3.17058223. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29930-LOC_Os03g29940|LOC_Os03g29930-LOC_Os03g29940|intergenic_region|LOC_Os03g29930-LOC_Os03g29940|||n.17059410C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1320 3 17061585 SNP-3.17060398. A G . . PR;ANN=G|splice_region_variant&intron_variant|LOW|LOC_Os03g29940|LOC_Os03g29940|transcript|LOC_Os03g29940.1|protein_coding|1/11|c.173-3A>G|||||| GT 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/1 0/1 1/1 ./. ./. 0/1 0/0 0/1 ./. ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 ./. ./. 0/1 1/1 ./. 0/1 0/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 1/1 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/1 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1321 3 17062268 SNP-3.17061081. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29940|LOC_Os03g29940|transcript|LOC_Os03g29940.1|protein_coding|3/12|c.790C>A|p.Leu264Met|790/3636|790/3636|264/1211||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1322 3 17064370 SNP-3.17063183. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29940|LOC_Os03g29940|transcript|LOC_Os03g29940.1|protein_coding|8/12|c.2197C>A|p.Lys733Lys|2197/3636|2197/3636|733/1211||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1323 3 17064446 SNP-3.17063259. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g29940|LOC_Os03g29940|transcript|LOC_Os03g29940.1|protein_coding|8/12|c.2273C>A|p.His758His|2273/3636|2273/3636|758/1211||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1324 3 17064447 SNP-3.17063260. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29940|LOC_Os03g29940|transcript|LOC_Os03g29940.1|protein_coding|8/12|c.2274C>A|p.His758Gln|2274/3636|2274/3636|758/1211||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1325 3 17064676 SNP-3.17063489. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29940|LOC_Os03g29940|transcript|LOC_Os03g29940.1|protein_coding|8/12|c.2503C>A|p.Leu835Ile|2503/3636|2503/3636|835/1211|| GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1326 3 17064954 SNP-3.17063767. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29940|LOC_Os03g29940|transcript|LOC_Os03g29940.1|protein_coding|8/11|c.2577+204C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1327 3 17065946 SNP-3.17064759. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g29940|LOC_Os03g29940|transcript|LOC_Os03g29940.1|protein_coding|11/12|c.2985C>A|p.Asn995Lys|2985/3636|2985/3636|995/1211|| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1328 3 17066399 SNP-3.17065212. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29940|LOC_Os03g29940|transcript|LOC_Os03g29940.1|protein_coding|11/11|c.3362-21A>G|||||| GT 1/1 0/0 ./. 0/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/1 0/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. ./. 0/1 1/1 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1329 3 17067493 SNP-3.17066306. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29940-LOC_Os03g29950|LOC_Os03g29940-LOC_Os03g29950|intergenic_region|LOC_Os03g29940-LOC_Os03g29950|||n.17067493C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1330 3 17069149 SNP-3.17067962. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29950|LOC_Os03g29950|transcript|LOC_Os03g29950.1|protein_coding|4/8|c.555+155C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g29950|LOC_Os03g29950|transcript|LOC_Os03g29950.2|protein_coding|4/8|c.177+155C>A|||||| GT 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1331 3 17073834 SNP-3.17072647. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29950-LOC_Os03g29960|LOC_Os03g29950-LOC_Os03g29960|intergenic_region|LOC_Os03g29950-LOC_Os03g29960|||n.17073834A>G|||||| GT ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1332 3 17074874 SNP-3.17073687. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29950-LOC_Os03g29960|LOC_Os03g29950-LOC_Os03g29960|intergenic_region|LOC_Os03g29950-LOC_Os03g29960|||n.17074874C>A|||||| GT ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1333 3 17076813 SNP-3.17075626. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29950-LOC_Os03g29960|LOC_Os03g29950-LOC_Os03g29960|intergenic_region|LOC_Os03g29950-LOC_Os03g29960|||n.17076813C>A|||||| GT 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/1 0/1 0/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1334 3 17079019 SNP-3.17077832. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29960|LOC_Os03g29960|transcript|LOC_Os03g29960.1|protein_coding|2/11|c.100-9A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1335 3 17080712 SNP-3.17079525. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29960|LOC_Os03g29960|transcript|LOC_Os03g29960.1|protein_coding|9/12|c.624A>G|p.Met208Met|624/2034|624/2034|208/677||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1336 3 17080998 SNP-3.17079811. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g29960|LOC_Os03g29960|transcript|LOC_Os03g29960.1|protein_coding|9/12|c.910A>G|p.Val304Val|910/2034|910/2034|304/677||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 0/1 ./. ./. 0/1 1/1 ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1337 3 17082728 SNP-3.17081541. A G . . PR;ANN=G|stop_gained|HIGH|LOC_Os03g29960|LOC_Os03g29960|transcript|LOC_Os03g29960.1|protein_coding|10/12|c.1026A>G|p.Tyr342*|1026/2034|1026/2034|342/677||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g29960|LOC_Os03g29960|1|1.00);NMD=(LOC_Os03g29960|LOC_Os03g29960|1|1.00) GT 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1338 3 17083355 SNP-3.17082168. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g29960|LOC_Os03g29960|transcript|LOC_Os03g29960.1|protein_coding|12/12|c.1349A>G|p.Ala450Gly|1349/2034|1349/2034|450/677||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1339 3 17084496 SNP-3.17083309. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29960-LOC_Os03g29970|LOC_Os03g29960-LOC_Os03g29970|intergenic_region|LOC_Os03g29960-LOC_Os03g29970|||n.17084496A>G|||||| GT ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1340 3 17084825 SNP-3.17083638. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29960-LOC_Os03g29970|LOC_Os03g29960-LOC_Os03g29970|intergenic_region|LOC_Os03g29960-LOC_Os03g29970|||n.17084825A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1341 3 17085178 SNP-3.17083991. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29960-LOC_Os03g29970|LOC_Os03g29960-LOC_Os03g29970|intergenic_region|LOC_Os03g29960-LOC_Os03g29970|||n.17085178A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1342 3 17086489 SNP-3.17085302. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g29970|LOC_Os03g29970|transcript|LOC_Os03g29970.1|protein_coding|1/1|c.637+465C>A|||||| GT 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1343 3 17086506 SNP-3.17085319. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29970|LOC_Os03g29970|transcript|LOC_Os03g29970.1|protein_coding|1/1|c.637+482A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1344 3 17089448 SNP-3.17088261. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29970-LOC_Os03g29980|LOC_Os03g29970-LOC_Os03g29980|intergenic_region|LOC_Os03g29970-LOC_Os03g29980|||n.17089448A>G|||||| GT 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1345 3 17089753 SNP-3.17088566. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29970-LOC_Os03g29980|LOC_Os03g29970-LOC_Os03g29980|intergenic_region|LOC_Os03g29970-LOC_Os03g29980|||n.17089753C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1346 3 17090397 SNP-3.17089210. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29970-LOC_Os03g29980|LOC_Os03g29970-LOC_Os03g29980|intergenic_region|LOC_Os03g29970-LOC_Os03g29980|||n.17090397A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1347 3 17090472 SNP-3.17089285. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29970-LOC_Os03g29980|LOC_Os03g29970-LOC_Os03g29980|intergenic_region|LOC_Os03g29970-LOC_Os03g29980|||n.17090472C>A|||||| GT 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1348 3 17090776 SNP-3.17089589. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29970-LOC_Os03g29980|LOC_Os03g29970-LOC_Os03g29980|intergenic_region|LOC_Os03g29970-LOC_Os03g29980|||n.17090776C>A|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1349 3 17092256 SNP-3.17091069. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g29980|LOC_Os03g29980|transcript|LOC_Os03g29980.2|protein_coding|1/7|c.-310A>G|||||1130|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1350 3 17092943 SNP-3.17091756. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g29980|LOC_Os03g29980|transcript|LOC_Os03g29980.2|protein_coding|2/6|c.-221+9A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1351 3 17097439 SNP-3.17096252. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29980-LOC_Os03g29990|LOC_Os03g29980-LOC_Os03g29990|intergenic_region|LOC_Os03g29980-LOC_Os03g29990|||n.17097439C>A|||||| GT 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1352 3 17098846 SNP-3.17097659. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29980-LOC_Os03g29990|LOC_Os03g29980-LOC_Os03g29990|intergenic_region|LOC_Os03g29980-LOC_Os03g29990|||n.17098846A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1353 3 17099351 SNP-3.17098164. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29980-LOC_Os03g29990|LOC_Os03g29980-LOC_Os03g29990|intergenic_region|LOC_Os03g29980-LOC_Os03g29990|||n.17099351A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1354 3 17099628 SNP-3.17098441. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29980-LOC_Os03g29990|LOC_Os03g29980-LOC_Os03g29990|intergenic_region|LOC_Os03g29980-LOC_Os03g29990|||n.17099628C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1355 3 17100185 SNP-3.17098998. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29980-LOC_Os03g29990|LOC_Os03g29980-LOC_Os03g29990|intergenic_region|LOC_Os03g29980-LOC_Os03g29990|||n.17100185A>G|||||| GT 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1356 3 17100860 SNP-3.17099673. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29980-LOC_Os03g29990|LOC_Os03g29980-LOC_Os03g29990|intergenic_region|LOC_Os03g29980-LOC_Os03g29990|||n.17100860A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1357 3 17101619 SNP-3.17100432. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29980-LOC_Os03g29990|LOC_Os03g29980-LOC_Os03g29990|intergenic_region|LOC_Os03g29980-LOC_Os03g29990|||n.17101619C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1358 3 17102747 SNP-3.17101560. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29980-LOC_Os03g29990|LOC_Os03g29980-LOC_Os03g29990|intergenic_region|LOC_Os03g29980-LOC_Os03g29990|||n.17102747A>G|||||| GT 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1359 3 17103110 SNP-3.17101923. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29980-LOC_Os03g29990|LOC_Os03g29980-LOC_Os03g29990|intergenic_region|LOC_Os03g29980-LOC_Os03g29990|||n.17103110A>G|||||| GT 0/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/1 ./. ./. 0/1 0/0 ./. 0/1 0/1 0/0 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 1/1 0/1 1/1 0/1 0/0 ./. ./. 0/1 1/1 0/1 ./. 1/1 0/0 0/1 ./. 0/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 0/0 ./. ./. 1/1 0/1 1/1 0/0 ./. 1/1 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 ./. 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/1 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1360 3 17106949 SNP-3.17105762. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29990-LOC_Os03g30000|LOC_Os03g29990-LOC_Os03g30000|intergenic_region|LOC_Os03g29990-LOC_Os03g30000|||n.17106949A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1361 3 17107044 SNP-3.17105857. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g29990-LOC_Os03g30000|LOC_Os03g29990-LOC_Os03g30000|intergenic_region|LOC_Os03g29990-LOC_Os03g30000|||n.17107044C>A|||||| GT 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1362 3 17107091 SNP-3.17105904. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29990-LOC_Os03g30000|LOC_Os03g29990-LOC_Os03g30000|intergenic_region|LOC_Os03g29990-LOC_Os03g30000|||n.17107091A>G|||||| GT ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/1 1/1 ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1363 3 17107615 SNP-3.17106428. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g29990-LOC_Os03g30000|LOC_Os03g29990-LOC_Os03g30000|intergenic_region|LOC_Os03g29990-LOC_Os03g30000|||n.17107615A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1364 3 17113483 SNP-3.17112296. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30000|LOC_Os03g30000|transcript|LOC_Os03g30000.1|protein_coding|1/2|c.-2-23T>C|||||| GT ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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1365 3 17114176 SNP-3.17112989. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30000-LOC_Os03g30010|LOC_Os03g30000-LOC_Os03g30010|intergenic_region|LOC_Os03g30000-LOC_Os03g30010|||n.17114176C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1366 3 17114400 SNP-3.17113213. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30000-LOC_Os03g30010|LOC_Os03g30000-LOC_Os03g30010|intergenic_region|LOC_Os03g30000-LOC_Os03g30010|||n.17114400C>A|||||| GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1367 3 17116915 SNP-3.17115728. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30000-LOC_Os03g30010|LOC_Os03g30000-LOC_Os03g30010|intergenic_region|LOC_Os03g30000-LOC_Os03g30010|||n.17116915C>A|||||| GT 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1368 3 17117693 SNP-3.17116506. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30000-LOC_Os03g30010|LOC_Os03g30000-LOC_Os03g30010|intergenic_region|LOC_Os03g30000-LOC_Os03g30010|||n.17117693C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1369 3 17118886 SNP-3.17117699. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30000-LOC_Os03g30010|LOC_Os03g30000-LOC_Os03g30010|intergenic_region|LOC_Os03g30000-LOC_Os03g30010|||n.17118886C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1370 3 17120131 SNP-3.17118944. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30010|LOC_Os03g30010|transcript|LOC_Os03g30010.1|protein_coding|2/2|c.87+389T>C|||||| GT 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1371 3 17120266 SNP-3.17119079. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30010|LOC_Os03g30010|transcript|LOC_Os03g30010.1|protein_coding|2/2|c.87+254T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1372 3 17120722 SNP-3.17119535. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30010|LOC_Os03g30010|transcript|LOC_Os03g30010.1|protein_coding|1/2|c.34-149G>T|||||| GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1373 3 17123162 SNP-3.17121975. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30010-LOC_Os03g30020|LOC_Os03g30010-LOC_Os03g30020|intergenic_region|LOC_Os03g30010-LOC_Os03g30020|||n.17123162A>G|||||| GT 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1374 3 17123460 SNP-3.17122273. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30010-LOC_Os03g30020|LOC_Os03g30010-LOC_Os03g30020|intergenic_region|LOC_Os03g30010-LOC_Os03g30020|||n.17123460C>A|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 0/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1375 3 17123994 SNP-3.17122807. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30010-LOC_Os03g30020|LOC_Os03g30010-LOC_Os03g30020|intergenic_region|LOC_Os03g30010-LOC_Os03g30020|||n.17123994C>A|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1376 3 17126152 SNP-3.17124965. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30010-LOC_Os03g30020|LOC_Os03g30010-LOC_Os03g30020|intergenic_region|LOC_Os03g30010-LOC_Os03g30020|||n.17126152C>A|||||| GT 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1377 3 17126775 SNP-3.17125588. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30020|LOC_Os03g30020|transcript|LOC_Os03g30020.1|protein_coding|1/1|c.177+173A>G|||||| GT 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/1 0/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1378 3 17127527 SNP-3.17126340. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30020-LOC_Os03g30030|LOC_Os03g30020-LOC_Os03g30030|intergenic_region|LOC_Os03g30020-LOC_Os03g30030|||n.17127527C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1379 3 17128413 SNP-3.17127226. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30020-LOC_Os03g30030|LOC_Os03g30020-LOC_Os03g30030|intergenic_region|LOC_Os03g30020-LOC_Os03g30030|||n.17128413C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/0 ./. 0/0 ./. 0/1 0/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1380 3 17129150 SNP-3.17127963. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30020-LOC_Os03g30030|LOC_Os03g30020-LOC_Os03g30030|intergenic_region|LOC_Os03g30020-LOC_Os03g30030|||n.17129150A>G|||||| GT 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1381 3 17129302 SNP-3.17128115. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30020-LOC_Os03g30030|LOC_Os03g30020-LOC_Os03g30030|intergenic_region|LOC_Os03g30020-LOC_Os03g30030|||n.17129302C>A|||||| GT ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1382 3 17130280 SNP-3.17129093. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30020-LOC_Os03g30030|LOC_Os03g30020-LOC_Os03g30030|intergenic_region|LOC_Os03g30020-LOC_Os03g30030|||n.17130280C>A|||||| GT ./. 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1383 3 17131818 SNP-3.17130631. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30020-LOC_Os03g30030|LOC_Os03g30020-LOC_Os03g30030|intergenic_region|LOC_Os03g30020-LOC_Os03g30030|||n.17131818C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/0 1/1 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1384 3 17131858 SNP-3.17130671. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30020-LOC_Os03g30030|LOC_Os03g30020-LOC_Os03g30030|intergenic_region|LOC_Os03g30020-LOC_Os03g30030|||n.17131858A>G|||||| GT 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1385 3 17132905 SNP-3.17131718. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30020-LOC_Os03g30030|LOC_Os03g30020-LOC_Os03g30030|intergenic_region|LOC_Os03g30020-LOC_Os03g30030|||n.17132905C>A|||||| GT 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1386 3 17133832 SNP-3.17132645. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30020-LOC_Os03g30030|LOC_Os03g30020-LOC_Os03g30030|intergenic_region|LOC_Os03g30020-LOC_Os03g30030|||n.17133832C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1387 3 17134497 SNP-3.17133310. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30030|LOC_Os03g30030|transcript|LOC_Os03g30030.1|protein_coding|1/1|c.1391T>C|p.Ala464Ala|1391/1662|1391/1515|464/504||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1388 3 17137062 SNP-3.17135875. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30030-LOC_Os03g30040|LOC_Os03g30030-LOC_Os03g30040|intergenic_region|LOC_Os03g30030-LOC_Os03g30040|||n.17137062C>A|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1389 3 17138730 SNP-3.17137543. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30040-LOC_Os03g30050|LOC_Os03g30040-LOC_Os03g30050|intergenic_region|LOC_Os03g30040-LOC_Os03g30050|||n.17138730A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1390 3 17140286 SNP-3.17139099. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30040-LOC_Os03g30050|LOC_Os03g30040-LOC_Os03g30050|intergenic_region|LOC_Os03g30040-LOC_Os03g30050|||n.17140286A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1391 3 17140784 SNP-3.17139597. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30040-LOC_Os03g30050|LOC_Os03g30040-LOC_Os03g30050|intergenic_region|LOC_Os03g30040-LOC_Os03g30050|||n.17140784A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1392 3 17143836 SNP-3.17142649. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30060|LOC_Os03g30060|transcript|LOC_Os03g30060.1|protein_coding|1/1|c.464G>T|p.Asn155Ile|568/1419|464/1086|155/361||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1393 3 17158273 SNP-3.17157082. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30080-LOC_Os03g30084|LOC_Os03g30080-LOC_Os03g30084|intergenic_region|LOC_Os03g30080-LOC_Os03g30084|||n.17158273A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1394 3 17162405 SNP-3.17161214. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30088|LOC_Os03g30088|transcript|LOC_Os03g30088.1|protein_coding|2/2|c.307-167G>T|||||| GT 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1395 3 17162768 SNP-3.17161577. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30088|LOC_Os03g30088|transcript|LOC_Os03g30088.1|protein_coding|2/3|c.187G>T|p.Leu63Leu|187/582|187/582|63/193||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1396 3 17165364 SNP-3.17164173. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30088-LOC_Os03g30092|LOC_Os03g30088-LOC_Os03g30092|intergenic_region|LOC_Os03g30088-LOC_Os03g30092|||n.17165364C>A|||||| GT 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1397 3 17167703 SNP-3.17166512. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30088-LOC_Os03g30092|LOC_Os03g30088-LOC_Os03g30092|intergenic_region|LOC_Os03g30088-LOC_Os03g30092|||n.17167703A>G|||||| GT 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1398 3 17168660 SNP-3.17167469. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30088-LOC_Os03g30092|LOC_Os03g30088-LOC_Os03g30092|intergenic_region|LOC_Os03g30088-LOC_Os03g30092|||n.17168660A>G|||||| GT 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1399 3 17170058 SNP-3.17168867. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30088-LOC_Os03g30092|LOC_Os03g30088-LOC_Os03g30092|intergenic_region|LOC_Os03g30088-LOC_Os03g30092|||n.17170058A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1400 3 17171398 SNP-3.17170207. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30088-LOC_Os03g30092|LOC_Os03g30088-LOC_Os03g30092|intergenic_region|LOC_Os03g30088-LOC_Os03g30092|||n.17171398C>A|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1401 3 17175832 SNP-3.17174641. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30092-LOC_Os03g30100|LOC_Os03g30092-LOC_Os03g30100|intergenic_region|LOC_Os03g30092-LOC_Os03g30100|||n.17175832C>A|||||| GT 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1402 3 17177886 SNP-3.17176695. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30092-LOC_Os03g30100|LOC_Os03g30092-LOC_Os03g30100|intergenic_region|LOC_Os03g30092-LOC_Os03g30100|||n.17177886A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1403 3 17177922 SNP-3.17176731. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30092-LOC_Os03g30100|LOC_Os03g30092-LOC_Os03g30100|intergenic_region|LOC_Os03g30092-LOC_Os03g30100|||n.17177922C>A|||||| GT 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1404 3 17178542 SNP-3.17177351. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30092-LOC_Os03g30100|LOC_Os03g30092-LOC_Os03g30100|intergenic_region|LOC_Os03g30092-LOC_Os03g30100|||n.17178542C>A|||||| GT 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1405 3 17180744 SNP-3.17179553. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30100|LOC_Os03g30100|transcript|LOC_Os03g30100.1|protein_coding|6/8|c.1340A>G|p.Met447Arg|1340/1866|1340/1866|447/621||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1406 3 17180764 SNP-3.17179573. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30100|LOC_Os03g30100|transcript|LOC_Os03g30100.1|protein_coding|6/8|c.1360A>G|p.Glu454Glu|1360/1866|1360/1866|454/621||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1407 3 17180994 SNP-3.17179803. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30100|LOC_Os03g30100|transcript|LOC_Os03g30100.1|protein_coding|6/8|c.1590A>G|p.Leu530Leu|1590/1866|1590/1866|530/621||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1408 3 17185798 SNP-3.17184607. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30110|LOC_Os03g30110|transcript|LOC_Os03g30110.1|protein_coding|3/8|c.1615G>T|p.Thr539Ser|1615/5184|1615/5184|539/1727||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1409 3 17188092 SNP-3.17186901. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30110|LOC_Os03g30110|transcript|LOC_Os03g30110.1|protein_coding|1/8|c.176G>T|p.Gly59Val|176/5184|176/5184|59/1727|| GT ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1410 3 17190109 SNP-3.17188918. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30110-LOC_Os03g30120|LOC_Os03g30110-LOC_Os03g30120|intergenic_region|LOC_Os03g30110-LOC_Os03g30120|||n.17190109C>A|||||| GT 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1411 3 17190292 SNP-3.17189101. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30110-LOC_Os03g30120|LOC_Os03g30110-LOC_Os03g30120|intergenic_region|LOC_Os03g30110-LOC_Os03g30120|||n.17190292A>G|||||| GT 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1412 3 17194160 SNP-3.17192969. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30110-LOC_Os03g30120|LOC_Os03g30110-LOC_Os03g30120|intergenic_region|LOC_Os03g30110-LOC_Os03g30120|||n.17194160C>A|||||| GT 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1413 3 17194174 SNP-3.17192983. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30110-LOC_Os03g30120|LOC_Os03g30110-LOC_Os03g30120|intergenic_region|LOC_Os03g30110-LOC_Os03g30120|||n.17194174C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1414 3 17197639 SNP-3.17196448. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30120|LOC_Os03g30120|transcript|LOC_Os03g30120.1|protein_coding|1/1|c.184C>A|p.Lys62Lys|204/891|184/792|62/263||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1415 3 17198765 SNP-3.17197574. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30120-LOC_Os03g30130|LOC_Os03g30120-LOC_Os03g30130|intergenic_region|LOC_Os03g30120-LOC_Os03g30130|||n.17198765C>A|||||| GT 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1416 3 17199644 SNP-3.17198453. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30120-LOC_Os03g30130|LOC_Os03g30120-LOC_Os03g30130|intergenic_region|LOC_Os03g30120-LOC_Os03g30130|||n.17199644C>A|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/1 1/1 ./. 0/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1417 3 17199966 SNP-3.17198775. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30120-LOC_Os03g30130|LOC_Os03g30120-LOC_Os03g30130|intergenic_region|LOC_Os03g30120-LOC_Os03g30130|||n.17199966A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1418 3 17201134 SNP-3.17199943. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30120-LOC_Os03g30130|LOC_Os03g30120-LOC_Os03g30130|intergenic_region|LOC_Os03g30120-LOC_Os03g30130|||n.17201134C>A|||||| GT 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1419 3 17202901 SNP-3.17201710. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30120-LOC_Os03g30130|LOC_Os03g30120-LOC_Os03g30130|intergenic_region|LOC_Os03g30120-LOC_Os03g30130|||n.17202901A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1420 3 17204094 SNP-3.17202903. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30120-LOC_Os03g30130|LOC_Os03g30120-LOC_Os03g30130|intergenic_region|LOC_Os03g30120-LOC_Os03g30130|||n.17204094C>A|||||| GT 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1421 3 17206153 SNP-3.17204962. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30120-LOC_Os03g30130|LOC_Os03g30120-LOC_Os03g30130|intergenic_region|LOC_Os03g30120-LOC_Os03g30130|||n.17206153A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1422 3 17206800 SNP-3.17205609. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30120-LOC_Os03g30130|LOC_Os03g30120-LOC_Os03g30130|intergenic_region|LOC_Os03g30120-LOC_Os03g30130|||n.17206800A>G|||||| GT ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1423 3 17210461 SNP-3.17209270. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30130|LOC_Os03g30130|transcript|LOC_Os03g30130.3|protein_coding|1/8|c.-36-41G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g30130|LOC_Os03g30130|transcript|LOC_Os03g30130.2|protein_coding|1/10|c.-36-41G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g30130|LOC_Os03g30130|transcript|LOC_Os03g30130.1|protein_coding|1/9|c.-36-41G>T|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1424 3 17210715 SNP-3.17209524. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30130-LOC_Os03g30150|LOC_Os03g30130-LOC_Os03g30150|intergenic_region|LOC_Os03g30130-LOC_Os03g30150|||n.17210715A>G|||||| GT 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1425 3 17211215 SNP-3.17210024. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30130-LOC_Os03g30150|LOC_Os03g30130-LOC_Os03g30150|intergenic_region|LOC_Os03g30130-LOC_Os03g30150|||n.17211215C>A|||||| GT 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 ./. 0/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1426 3 17211277 SNP-3.17210086. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30130-LOC_Os03g30150|LOC_Os03g30130-LOC_Os03g30150|intergenic_region|LOC_Os03g30130-LOC_Os03g30150|||n.17211277C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1427 3 17211985 SNP-3.17210794. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30130-LOC_Os03g30150|LOC_Os03g30130-LOC_Os03g30150|intergenic_region|LOC_Os03g30130-LOC_Os03g30150|||n.17211985A>G|||||| GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1428 3 17213124 SNP-3.17211933. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30130-LOC_Os03g30150|LOC_Os03g30130-LOC_Os03g30150|intergenic_region|LOC_Os03g30130-LOC_Os03g30150|||n.17213124C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1429 3 17213678 SNP-3.17212487. C A . . PR;ANN=A|missense_variant&splice_region_variant|MODERATE|LOC_Os03g30150|LOC_Os03g30150|transcript|LOC_Os03g30150.1|protein_coding|2/2|c.683G>T|p.Thr228Ile|683/834|683/834|228/277||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1430 3 17217646 SNP-3.17216455. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30160-LOC_Os03g30170|LOC_Os03g30160-LOC_Os03g30170|intergenic_region|LOC_Os03g30160-LOC_Os03g30170|||n.17217646A>G|||||| GT 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1431 3 17221550 SNP-3.17220359. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30170|LOC_Os03g30170|transcript|LOC_Os03g30170.1|protein_coding|3/3|c.1971C>A|p.Ile657Ile|1971/2487|1971/2487|657/828||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1432 3 17228574 SNP-3.17227383. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30190-LOC_Os03g30200|LOC_Os03g30190-LOC_Os03g30200|intergenic_region|LOC_Os03g30190-LOC_Os03g30200|||n.17228574A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1433 3 17229925 SNP-3.17228734. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30190-LOC_Os03g30200|LOC_Os03g30190-LOC_Os03g30200|intergenic_region|LOC_Os03g30190-LOC_Os03g30200|||n.17229925C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1434 3 17236363 SNP-3.17235172. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30190-LOC_Os03g30200|LOC_Os03g30190-LOC_Os03g30200|intergenic_region|LOC_Os03g30190-LOC_Os03g30200|||n.17236363C>A|||||| GT 0/0 1/1 0/1 1/1 1/1 ./. 0/0 ./. 0/1 ./. 0/0 ./. ./. ./. 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1435 3 17236799 SNP-3.17235608. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30200|LOC_Os03g30200|transcript|LOC_Os03g30200.1|protein_coding|1/2|c.111A>G|p.Ala37Ala|219/1167|111/627|37/208||WARNING_REF_DOES_NOT_MATCH_GENOME,G|synonymous_variant|LOW|LOC_Os03g30200|LOC_Os03g30200|transcript|LOC_Os03g30200.2|protein_coding|1/2|c.111A>G|p.Ala37Ala|219/1176|111/621|37/206||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/1 ./. 1/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/1 ./. 1/1 0/1 0/1 0/1 ./. 0/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1436 3 17240709 SNP-3.17239518. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g30200|LOC_Os03g30200|transcript|LOC_Os03g30200.1|protein_coding|2/2|c.*60A>G|||||60|WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g30200|LOC_Os03g30200|transcript|LOC_Os03g30200.2|protein_coding|2/2|c.*75A>G|||||3400|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1437 3 17240878 SNP-3.17239687. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g30200|LOC_Os03g30200|transcript|LOC_Os03g30200.1|protein_coding|2/2|c.*229A>G|||||229|WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g30200|LOC_Os03g30200|transcript|LOC_Os03g30200.2|protein_coding|2/2|c.*244A>G|||||3569|WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1438 3 17248594 SNP-3.17247403. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30220|LOC_Os03g30220|transcript|LOC_Os03g30220.1|protein_coding|1/2|c.278C>A|p.Leu93His|278/1008|278/1008|93/335||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1439 3 17251999 SNP-3.17250808. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30220-LOC_Os03g30230|LOC_Os03g30220-LOC_Os03g30230|intergenic_region|LOC_Os03g30220-LOC_Os03g30230|||n.17251999C>A|||||| GT 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1440 3 17253025 SNP-3.17251834. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30220-LOC_Os03g30230|LOC_Os03g30220-LOC_Os03g30230|intergenic_region|LOC_Os03g30220-LOC_Os03g30230|||n.17253025A>G|||||| GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1441 3 17254178 SNP-3.17252987. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30230-LOC_Os03g30240|LOC_Os03g30230-LOC_Os03g30240|intergenic_region|LOC_Os03g30230-LOC_Os03g30240|||n.17254178C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1442 3 17255297 SNP-3.17254106. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30230-LOC_Os03g30240|LOC_Os03g30230-LOC_Os03g30240|intergenic_region|LOC_Os03g30230-LOC_Os03g30240|||n.17255297C>A|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1443 3 17257252 SNP-3.17256061. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30230-LOC_Os03g30240|LOC_Os03g30230-LOC_Os03g30240|intergenic_region|LOC_Os03g30230-LOC_Os03g30240|||n.17257252C>A|||||| GT 0/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1444 3 17257501 SNP-3.17256310. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30230-LOC_Os03g30240|LOC_Os03g30230-LOC_Os03g30240|intergenic_region|LOC_Os03g30230-LOC_Os03g30240|||n.17257501A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1445 3 17257967 SNP-3.17256776. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30230-LOC_Os03g30240|LOC_Os03g30230-LOC_Os03g30240|intergenic_region|LOC_Os03g30230-LOC_Os03g30240|||n.17257967C>A|||||| GT 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1446 3 17260017 SNP-3.17258826. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30240-LOC_Os03g30250|LOC_Os03g30240-LOC_Os03g30250|intergenic_region|LOC_Os03g30240-LOC_Os03g30250|||n.17260017A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1447 3 17260323 SNP-3.17259132. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g30250|LOC_Os03g30250|transcript|LOC_Os03g30250.1|protein_coding|1/3|c.-178A>G|||||178|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1448 3 17261757 SNP-3.17260566. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30250|LOC_Os03g30250|transcript|LOC_Os03g30250.1|protein_coding|2/2|c.1120+43A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1449 3 17264492 SNP-3.17263301. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30260|LOC_Os03g30260|transcript|LOC_Os03g30260.1|protein_coding|2/5|c.162+101T>C|||||| GT 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/1 1/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1450 3 17265206 SNP-3.17264015. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30260|LOC_Os03g30260|transcript|LOC_Os03g30260.1|protein_coding|1/5|c.83-534G>T|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1451 3 17266180 SNP-3.17264989. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g30260|LOC_Os03g30260|transcript|LOC_Os03g30260.1|protein_coding|1/6|c.-162G>T|||||162|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1452 3 17266653 SNP-3.17265462. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30260-LOC_Os03g30264|LOC_Os03g30260-LOC_Os03g30264|intergenic_region|LOC_Os03g30260-LOC_Os03g30264|||n.17266653C>A|||||| GT 0/0 ./. 0/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 ./. 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1453 3 17267380 SNP-3.17266189. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30260-LOC_Os03g30264|LOC_Os03g30260-LOC_Os03g30264|intergenic_region|LOC_Os03g30260-LOC_Os03g30264|||n.17267380C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1454 3 17268078 SNP-3.17266887. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30260-LOC_Os03g30264|LOC_Os03g30260-LOC_Os03g30264|intergenic_region|LOC_Os03g30260-LOC_Os03g30264|||n.17268078C>A|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1455 3 17270402 SNP-3.17269211. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30260-LOC_Os03g30264|LOC_Os03g30260-LOC_Os03g30264|intergenic_region|LOC_Os03g30260-LOC_Os03g30264|||n.17270402C>A|||||| GT ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1456 3 17272125 SNP-3.17270934. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30264-LOC_Os03g30270|LOC_Os03g30264-LOC_Os03g30270|intergenic_region|LOC_Os03g30264-LOC_Os03g30270|||n.17272125A>G|||||| GT 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1457 3 17273290 SNP-3.17272099. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30264-LOC_Os03g30270|LOC_Os03g30264-LOC_Os03g30270|intergenic_region|LOC_Os03g30264-LOC_Os03g30270|||n.17273290C>A|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1458 3 17273462 SNP-3.17272271. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30264-LOC_Os03g30270|LOC_Os03g30264-LOC_Os03g30270|intergenic_region|LOC_Os03g30264-LOC_Os03g30270|||n.17273462A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1459 3 17275994 SNP-3.17274803. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g30270|LOC_Os03g30270|transcript|LOC_Os03g30270.1|protein_coding|1/3|c.-7C>A|||||7|WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1460 3 17276108 SNP-3.17274917. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30270|LOC_Os03g30270|transcript|LOC_Os03g30270.1|protein_coding|1/3|c.108A>G|p.Pro36Pro|124/781|108/765|36/254||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1461 3 17276840 SNP-3.17275649. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30270|LOC_Os03g30270|transcript|LOC_Os03g30270.1|protein_coding|1/2|c.375-233A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1462 3 17277250 SNP-3.17276059. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30270|LOC_Os03g30270|transcript|LOC_Os03g30270.1|protein_coding|2/2|c.480+72A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1463 3 17278027 SNP-3.17276836. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30270|LOC_Os03g30270|transcript|LOC_Os03g30270.1|protein_coding|3/3|c.740C>A|p.Asn247Asn|756/781|740/765|247/254||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/1 0/1 ./. 0/1 0/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1464 3 17278691 SNP-3.17277500. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30280|LOC_Os03g30280|transcript|LOC_Os03g30280.1|protein_coding|2/2|c.430T>C|p.Gln144Gln|430/516|430/516|144/171||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1465 3 17278757 SNP-3.17277566. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30280|LOC_Os03g30280|transcript|LOC_Os03g30280.1|protein_coding|2/2|c.364T>C|p.Gly122Arg|364/516|364/516|122/171||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1466 3 17279274 SNP-3.17278083. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30280-LOC_Os03g30290|LOC_Os03g30280-LOC_Os03g30290|intergenic_region|LOC_Os03g30280-LOC_Os03g30290|||n.17279274C>A|||||| GT 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1467 3 17282773 SNP-3.17281582. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30280-LOC_Os03g30290|LOC_Os03g30280-LOC_Os03g30290|intergenic_region|LOC_Os03g30280-LOC_Os03g30290|||n.17282773A>G|||||| GT ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1468 3 17285432 SNP-3.17284241. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30280-LOC_Os03g30290|LOC_Os03g30280-LOC_Os03g30290|intergenic_region|LOC_Os03g30280-LOC_Os03g30290|||n.17285432A>G|||||| GT 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1469 3 17287490 SNP-3.17286299. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30290-LOC_Os03g30300|LOC_Os03g30290-LOC_Os03g30300|intergenic_region|LOC_Os03g30290-LOC_Os03g30300|||n.17287490A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1470 3 17294126 SNP-3.17292935. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30300-LOC_Os03g30320|LOC_Os03g30300-LOC_Os03g30320|intergenic_region|LOC_Os03g30300-LOC_Os03g30320|||n.17294126A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 ./. ./. 0/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1471 3 17295161 SNP-3.17293970. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30300-LOC_Os03g30320|LOC_Os03g30300-LOC_Os03g30320|intergenic_region|LOC_Os03g30300-LOC_Os03g30320|||n.17295161A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1472 3 17295666 SNP-3.17294475. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30300-LOC_Os03g30320|LOC_Os03g30300-LOC_Os03g30320|intergenic_region|LOC_Os03g30300-LOC_Os03g30320|||n.17295666A>G|||||| GT ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1473 3 17295669 SNP-3.17294478. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30300-LOC_Os03g30320|LOC_Os03g30300-LOC_Os03g30320|intergenic_region|LOC_Os03g30300-LOC_Os03g30320|||n.17295669A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1474 3 17297158 SNP-3.17295967. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30320|LOC_Os03g30320|transcript|LOC_Os03g30320.1|protein_coding|2/4|c.126+81C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1475 3 17299097 SNP-3.17297906. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30320|LOC_Os03g30320|transcript|LOC_Os03g30320.1|protein_coding|4/5|c.380C>A|p.Gly127Glu|380/714|380/714|127/237||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1476 3 17299249 SNP-3.17298058. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30320|LOC_Os03g30320|transcript|LOC_Os03g30320.1|protein_coding|5/5|c.493C>A|p.Lys165Lys|493/714|493/714|165/237||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1477 3 17301282 SNP-3.17300091. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30320-LOC_Os03g30334|LOC_Os03g30320-LOC_Os03g30334|intergenic_region|LOC_Os03g30320-LOC_Os03g30334|||n.17301282A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 ./. ./. ./. 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1478 3 17301393 SNP-3.17300202. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30320-LOC_Os03g30334|LOC_Os03g30320-LOC_Os03g30334|intergenic_region|LOC_Os03g30320-LOC_Os03g30334|||n.17301393C>A|||||| GT ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1479 3 17302249 SNP-3.17301058. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30320-LOC_Os03g30334|LOC_Os03g30320-LOC_Os03g30334|intergenic_region|LOC_Os03g30320-LOC_Os03g30334|||n.17302249C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1480 3 17302840 SNP-3.17301649. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30320-LOC_Os03g30334|LOC_Os03g30320-LOC_Os03g30334|intergenic_region|LOC_Os03g30320-LOC_Os03g30334|||n.17302840A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1481 3 17302866 SNP-3.17301675. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30320-LOC_Os03g30334|LOC_Os03g30320-LOC_Os03g30334|intergenic_region|LOC_Os03g30320-LOC_Os03g30334|||n.17302866A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1482 3 17307301 SNP-3.17306110. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30334-LOC_Os03g30350|LOC_Os03g30334-LOC_Os03g30350|intergenic_region|LOC_Os03g30334-LOC_Os03g30350|||n.17307301A>G|||||| GT 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1483 3 17308836 SNP-3.17307645. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30334-LOC_Os03g30350|LOC_Os03g30334-LOC_Os03g30350|intergenic_region|LOC_Os03g30334-LOC_Os03g30350|||n.17308836A>G|||||| GT 1/1 0/0 0/1 0/0 1/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1484 3 17309669 SNP-3.17308478. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30350|LOC_Os03g30350|transcript|LOC_Os03g30350.1|protein_coding|1/5|c.611A>G|p.Asp204Gly|611/3000|611/3000|204/999|| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1485 3 17309756 SNP-3.17308565. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30350|LOC_Os03g30350|transcript|LOC_Os03g30350.1|protein_coding|1/5|c.698C>A|p.Gly233Glu|698/3000|698/3000|233/999||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. ./. 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1486 3 17310245 SNP-3.17309054. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30350|LOC_Os03g30350|transcript|LOC_Os03g30350.1|protein_coding|2/5|c.1120C>A|p.Ser374Thr|1120/3000|1120/3000|374/999||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1487 3 17310890 SNP-3.17309699. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30350|LOC_Os03g30350|transcript|LOC_Os03g30350.1|protein_coding|4/5|c.1481C>A|p.Gly494Glu|1481/3000|1481/3000|494/999||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 1/1 0/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1488 3 17311820 SNP-3.17310629. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30350|LOC_Os03g30350|transcript|LOC_Os03g30350.1|protein_coding|5/5|c.2367C>A|p.Leu789Leu|2367/3000|2367/3000|789/999||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1489 3 17312803 SNP-3.17311612. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|1/5|c.101C>A|p.Val34Glu|101/1884|101/1884|34/627||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1490 3 17313282 SNP-3.17312091. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|1/4|c.525+55A>G|||||| GT 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/1 ./. ./. ./. 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1491 3 17315125 SNP-3.17313934. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|4/5|c.1035A>G|p.Leu345Leu|1035/1884|1035/1884|345/627||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1492 3 17316053 SNP-3.17314862. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|4/4|c.1305-208C>A|||||| GT 0/0 ./. ./. 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1493 3 17316246 SNP-3.17315055. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|4/4|c.1305-15C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1494 3 17316358 SNP-3.17315167. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|5/5|c.1402A>G|p.Arg468Gly|1402/1884|1402/1884|468/627||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1495 3 17316524 SNP-3.17315333. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|5/5|c.1568A>G|p.Pro523Arg|1568/1884|1568/1884|523/627||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1496 3 17316583 SNP-3.17315392. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|5/5|c.1627A>G|p.Gly543Gly|1627/1884|1627/1884|543/627||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1497 3 17316704 SNP-3.17315513. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|5/5|c.1748C>A|p.Val583Glu|1748/1884|1748/1884|583/627||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1498 3 17316770 SNP-3.17315579. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|5/5|c.1814C>A|p.Ser605*|1814/1884|1814/1884|605/627|| GT ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1499 3 17316808 SNP-3.17315617. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30360|LOC_Os03g30360|transcript|LOC_Os03g30360.1|protein_coding|5/5|c.1852C>A|p.Ala618Thr|1852/1884|1852/1884|618/627||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 ./. 0/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 0/1 0/1 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1500 3 17317090 SNP-3.17315899. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30360-LOC_Os03g30370|LOC_Os03g30360-LOC_Os03g30370|intergenic_region|LOC_Os03g30360-LOC_Os03g30370|||n.17317090A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1501 3 17317120 SNP-3.17315929. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30360-LOC_Os03g30370|LOC_Os03g30360-LOC_Os03g30370|intergenic_region|LOC_Os03g30360-LOC_Os03g30370|||n.17317120C>A|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1502 3 17317156 SNP-3.17315965. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30360-LOC_Os03g30370|LOC_Os03g30360-LOC_Os03g30370|intergenic_region|LOC_Os03g30360-LOC_Os03g30370|||n.17317156C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1503 3 17317611 SNP-3.17316420. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30360-LOC_Os03g30370|LOC_Os03g30360-LOC_Os03g30370|intergenic_region|LOC_Os03g30360-LOC_Os03g30370|||n.17317611A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1504 3 17323813 SNP-3.17322622. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30370-LOC_Os03g30390|LOC_Os03g30370-LOC_Os03g30390|intergenic_region|LOC_Os03g30370-LOC_Os03g30390|||n.17323813A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1505 3 17328763 SNP-3.17327572. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30390-LOC_Os03g30400|LOC_Os03g30390-LOC_Os03g30400|intergenic_region|LOC_Os03g30390-LOC_Os03g30400|||n.17328763C>A|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/1 0/1 0/1 ./. 0/1 1/1 0/1 0/0 0/1 1/1 0/1 1/1 ./. 0/0 ./. 0/1 0/1 0/1 ./. 1/1 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 ./. 0/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 ./. 0/1 0/1 0/1 0/1 ./. 0/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1506 3 17329992 SNP-3.17328801. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30390-LOC_Os03g30400|LOC_Os03g30390-LOC_Os03g30400|intergenic_region|LOC_Os03g30390-LOC_Os03g30400|||n.17329992C>A|||||| GT 0/0 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1507 3 17331753 SNP-3.17330562. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30390-LOC_Os03g30400|LOC_Os03g30390-LOC_Os03g30400|intergenic_region|LOC_Os03g30390-LOC_Os03g30400|||n.17331753C>A|||||| GT ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1508 3 17332696 SNP-3.17331505. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30390-LOC_Os03g30400|LOC_Os03g30390-LOC_Os03g30400|intergenic_region|LOC_Os03g30390-LOC_Os03g30400|||n.17332696A>G|||||| GT 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1509 3 17334445 SNP-3.17333254. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30390-LOC_Os03g30400|LOC_Os03g30390-LOC_Os03g30400|intergenic_region|LOC_Os03g30390-LOC_Os03g30400|||n.17334445C>A|||||| GT 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1510 3 17337378 SNP-3.17336187. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30400-LOC_Os03g30410|LOC_Os03g30400-LOC_Os03g30410|intergenic_region|LOC_Os03g30400-LOC_Os03g30410|||n.17337378C>A|||||| GT 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1511 3 17340602 SNP-3.17339411. A G . . PR;ANN=G|stop_lost|HIGH|LOC_Os03g30420|LOC_Os03g30420|transcript|LOC_Os03g30420.1|protein_coding|2/2|c.1548T>C|p.Ter516Cysext*?|1584/1771|1548/1548|516/515||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 1/1 1/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1512 3 17342404 SNP-3.17341213. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30420-LOC_Os03g30430|LOC_Os03g30420-LOC_Os03g30430|intergenic_region|LOC_Os03g30420-LOC_Os03g30430|||n.17342404C>A|||||| GT 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/1 1/1 0/0 ./. ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1513 3 17343763 SNP-3.17342572. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30420-LOC_Os03g30430|LOC_Os03g30420-LOC_Os03g30430|intergenic_region|LOC_Os03g30420-LOC_Os03g30430|||n.17343763A>G|||||| GT 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1514 3 17344512 SNP-3.17343321. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30420-LOC_Os03g30430|LOC_Os03g30420-LOC_Os03g30430|intergenic_region|LOC_Os03g30420-LOC_Os03g30430|||n.17344512C>A|||||| GT 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1515 3 17349057 SNP-3.17347866. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30430|LOC_Os03g30430|transcript|LOC_Os03g30430.1|protein_coding|1/2|c.-22-422G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g30430|LOC_Os03g30430|transcript|LOC_Os03g30430.2|protein_coding|1/2|c.-22-422G>T|||||| GT 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1516 3 17349725 SNP-3.17348534. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30430|LOC_Os03g30430|transcript|LOC_Os03g30430.1|protein_coding|1/2|c.-23+703G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g30430|LOC_Os03g30430|transcript|LOC_Os03g30430.2|protein_coding|1/2|c.-23+698G>T|||||| GT ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1517 3 17350375 SNP-3.17349184. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30430|LOC_Os03g30430|transcript|LOC_Os03g30430.1|protein_coding|1/2|c.-23+53G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g30430|LOC_Os03g30430|transcript|LOC_Os03g30430.2|protein_coding|1/2|c.-23+48G>T|||||| GT 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 0/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1518 3 17351193 SNP-3.17350002. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30430-LOC_Os03g30440|LOC_Os03g30430-LOC_Os03g30440|intergenic_region|LOC_Os03g30430-LOC_Os03g30440|||n.17351193A>G|||||| GT 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1519 3 17354614 SNP-3.17353423. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30430-LOC_Os03g30440|LOC_Os03g30430-LOC_Os03g30440|intergenic_region|LOC_Os03g30430-LOC_Os03g30440|||n.17354614A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/1 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 0/0 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1520 3 17356355 SNP-3.17355164. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30440|LOC_Os03g30440|transcript|LOC_Os03g30440.1|protein_coding|4/4|c.280-150T>C|||||| GT ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1521 3 17357038 SNP-3.17355847. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30440|LOC_Os03g30440|transcript|LOC_Os03g30440.1|protein_coding|3/4|c.194-22T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1522 3 17357239 SNP-3.17356048. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30440|LOC_Os03g30440|transcript|LOC_Os03g30440.1|protein_coding|3/4|c.194-223T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1523 3 17360156 SNP-3.17358965. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30440-LOC_Os03g30450|LOC_Os03g30440-LOC_Os03g30450|intergenic_region|LOC_Os03g30440-LOC_Os03g30450|||n.17360156A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 |
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1524 3 17360361 SNP-3.17359170. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30440-LOC_Os03g30450|LOC_Os03g30440-LOC_Os03g30450|intergenic_region|LOC_Os03g30440-LOC_Os03g30450|||n.17360361C>A|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1525 3 17361360 SNP-3.17360169. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30440-LOC_Os03g30450|LOC_Os03g30440-LOC_Os03g30450|intergenic_region|LOC_Os03g30440-LOC_Os03g30450|||n.17361360A>G|||||| GT 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 |
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1526 3 17363340 SNP-3.17362149. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30440-LOC_Os03g30450|LOC_Os03g30440-LOC_Os03g30450|intergenic_region|LOC_Os03g30440-LOC_Os03g30450|||n.17363340A>G|||||| GT 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 ./. ./. 1/1 ./. ./. 0/1 0/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1527 3 17363396 SNP-3.17362205. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30440-LOC_Os03g30450|LOC_Os03g30440-LOC_Os03g30450|intergenic_region|LOC_Os03g30440-LOC_Os03g30450|||n.17363396C>A|||||| GT ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 |
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1528 3 17363628 SNP-3.17362437. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30440-LOC_Os03g30450|LOC_Os03g30440-LOC_Os03g30450|intergenic_region|LOC_Os03g30440-LOC_Os03g30450|||n.17363628A>G|||||| GT 1/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1529 3 17368872 SNP-3.17367681. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30450|LOC_Os03g30450|transcript|LOC_Os03g30450.1|protein_coding|3/5|c.1423+687T>C|||||| GT 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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1530 3 17370258 SNP-3.17369067. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30450|LOC_Os03g30450|transcript|LOC_Os03g30450.1|protein_coding|3/6|c.724G>T|p.Arg242Trp|724/4632|724/4632|242/1543||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1531 3 17371659 SNP-3.17370468. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30450|LOC_Os03g30450|transcript|LOC_Os03g30450.1|protein_coding|2/6|c.245G>T|p.Val82Val|245/4632|245/4632|82/1543||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1532 3 17371724 SNP-3.17370533. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30450|LOC_Os03g30450|transcript|LOC_Os03g30450.1|protein_coding|1/5|c.199-19T>C|||||| GT ./. 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1533 3 17371751 SNP-3.17370560. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30450|LOC_Os03g30450|transcript|LOC_Os03g30450.1|protein_coding|1/5|c.199-46T>C|||||| GT 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1534 3 17373470 SNP-3.17372279. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30450-LOC_Os03g30460|LOC_Os03g30450-LOC_Os03g30460|intergenic_region|LOC_Os03g30450-LOC_Os03g30460|||n.17373470A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1535 3 17376074 SNP-3.17374883. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30450-LOC_Os03g30460|LOC_Os03g30450-LOC_Os03g30460|intergenic_region|LOC_Os03g30450-LOC_Os03g30460|||n.17376074A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1536 3 17376185 SNP-3.17374994. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30450-LOC_Os03g30460|LOC_Os03g30450-LOC_Os03g30460|intergenic_region|LOC_Os03g30450-LOC_Os03g30460|||n.17376185A>G|||||| GT 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1537 3 17376429 SNP-3.17375238. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30450-LOC_Os03g30460|LOC_Os03g30450-LOC_Os03g30460|intergenic_region|LOC_Os03g30450-LOC_Os03g30460|||n.17376429A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1538 3 17381846 SNP-3.17380655. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30460|LOC_Os03g30460|transcript|LOC_Os03g30460.1|protein_coding|8/18|c.765-145G>T|||||| GT 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1539 3 17383050 SNP-3.17381859. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30460|LOC_Os03g30460|transcript|LOC_Os03g30460.1|protein_coding|7/18|c.672+283T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1540 3 17383188 SNP-3.17381997. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30460|LOC_Os03g30460|transcript|LOC_Os03g30460.1|protein_coding|7/18|c.672+145G>T|||||| GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1541 3 17384655 SNP-3.17383464. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30460|LOC_Os03g30460|transcript|LOC_Os03g30460.1|protein_coding|5/18|c.448-339G>T|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1542 3 17386362 SNP-3.17385171. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30460|LOC_Os03g30460|transcript|LOC_Os03g30460.1|protein_coding|2/18|c.165+57T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1543 3 17390430 SNP-3.17389239. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30460-LOC_Os03g30470|LOC_Os03g30460-LOC_Os03g30470|intergenic_region|LOC_Os03g30460-LOC_Os03g30470|||n.17390430A>G|||||| GT 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1544 3 17391793 SNP-3.17390602. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30470|LOC_Os03g30470|transcript|LOC_Os03g30470.1|protein_coding|1/1|c.938C>A|p.Asp313Asp|1004/1082|938/981|313/326||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1545 3 17393979 SNP-3.17392788. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30470-LOC_Os03g30500|LOC_Os03g30470-LOC_Os03g30500|intergenic_region|LOC_Os03g30470-LOC_Os03g30500|||n.17393979C>A|||||| GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1546 3 17394776 SNP-3.17393585. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30470-LOC_Os03g30500|LOC_Os03g30470-LOC_Os03g30500|intergenic_region|LOC_Os03g30470-LOC_Os03g30500|||n.17394776C>A|||||| GT 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1547 3 17397474 SNP-3.17396283. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30470-LOC_Os03g30500|LOC_Os03g30470-LOC_Os03g30500|intergenic_region|LOC_Os03g30470-LOC_Os03g30500|||n.17397474C>A|||||| GT 0/0 ./. 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1548 3 17399578 SNP-3.17398387. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30470-LOC_Os03g30500|LOC_Os03g30470-LOC_Os03g30500|intergenic_region|LOC_Os03g30470-LOC_Os03g30500|||n.17399578A>G|||||| GT ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1549 3 17404250 SNP-3.17403059. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|2/11|c.414A>G|p.Ala138Ala|414/2442|414/2442|138/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1550 3 17404496 SNP-3.17403305. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|2/11|c.660A>G|p.Arg220Arg|660/2442|660/2442|220/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/1 0/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1551 3 17404634 SNP-3.17403443. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|2/11|c.798A>G|p.Lys266Lys|798/2442|798/2442|266/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1552 3 17404769 SNP-3.17403578. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|2/11|c.933A>G|p.Lys311Lys|933/2442|933/2442|311/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1553 3 17405633 SNP-3.17404442. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|4/11|c.1133C>A|p.Leu378Gln|1133/2442|1133/2442|378/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1554 3 17407227 SNP-3.17406036. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|6/11|c.1438C>A|p.Leu480Ile|1438/2442|1438/2442|480/813|| GT 0/0 ./. 0/1 1/1 0/1 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1555 3 17407646 SNP-3.17406455. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|7/11|c.1569C>A|p.Glu523Glu|1569/2442|1569/2442|523/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1556 3 17407766 SNP-3.17406575. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|7/11|c.1689C>A|p.Thr563Thr|1689/2442|1689/2442|563/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1557 3 17407784 SNP-3.17406593. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|7/11|c.1707C>A|p.Arg569Arg|1707/2442|1707/2442|569/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/1 ./. ./. 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/1 ./. 1/1 1/1 ./. ./. 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1558 3 17408862 SNP-3.17407671. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|11/11|c.2383A>G|p.His795Asp|2383/2442|2383/2442|795/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1559 3 17408911 SNP-3.17407720. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30510|LOC_Os03g30510|transcript|LOC_Os03g30510.1|protein_coding|11/11|c.2432A>G|p.Thr811Arg|2432/2442|2432/2442|811/813||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1560 3 17410405 SNP-3.17409214. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g30519|LOC_Os03g30519|transcript|LOC_Os03g30519.1|protein_coding|2/2|c.*1822T>C|||||1822|,G|intron_variant|MODIFIER|LOC_Os03g30519|LOC_Os03g30519|transcript|LOC_Os03g30519.2|protein_coding|2/2|c.*824-119T>C|||||| GT 0/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1561 3 17411943 SNP-3.17410752. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g30519|LOC_Os03g30519|transcript|LOC_Os03g30519.1|protein_coding|2/2|c.*284T>C|||||284|WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g30519|LOC_Os03g30519|transcript|LOC_Os03g30519.2|protein_coding|2/3|c.*284T>C|||||284|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1562 3 17412479 SNP-3.17411288. C A . . PR;ANN=A|splice_region_variant&synonymous_variant|LOW|LOC_Os03g30519|LOC_Os03g30519|transcript|LOC_Os03g30519.1|protein_coding|1/2|c.450G>T|p.Ala150Ala|476/2739|450/477|150/158||WARNING_REF_DOES_NOT_MATCH_GENOME,A|splice_region_variant&synonymous_variant|LOW|LOC_Os03g30519|LOC_Os03g30519|transcript|LOC_Os03g30519.2|protein_coding|1/3|c.450G>T|p.Ala150Ala|476/1622|450/477|150/158||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1563 3 17415865 SNP-3.17414646. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30519-LOC_Os03g30530|LOC_Os03g30519-LOC_Os03g30530|intergenic_region|LOC_Os03g30519-LOC_Os03g30530|||n.17415865C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1564 3 17419157 SNP-3.17417938. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30519-LOC_Os03g30530|LOC_Os03g30519-LOC_Os03g30530|intergenic_region|LOC_Os03g30519-LOC_Os03g30530|||n.17419157A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1565 3 17421689 SNP-3.17420470. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30519-LOC_Os03g30530|LOC_Os03g30519-LOC_Os03g30530|intergenic_region|LOC_Os03g30519-LOC_Os03g30530|||n.17421689C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1566 3 17421863 SNP-3.17420644. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30519-LOC_Os03g30530|LOC_Os03g30519-LOC_Os03g30530|intergenic_region|LOC_Os03g30519-LOC_Os03g30530|||n.17421863C>A|||||| GT 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1567 3 17425033 SNP-3.17423814. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30530|LOC_Os03g30530|transcript|LOC_Os03g30530.1|protein_coding|3/5|c.1810C>A|p.Val604Ile|2160/3312|1810/2781|604/926||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g30530|LOC_Os03g30530|transcript|LOC_Os03g30530.3|protein_coding|3/3|c.1807C>A|p.Val603Ile|2157/2320|1807/1959|603/652||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g30530|LOC_Os03g30530|transcript|LOC_Os03g30530.2|protein_coding|3/5|c.1807C>A|p.Val603Ile|2157/3309|1807/2778|603/925||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1568 3 17425659 SNP-3.17424440. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30530|LOC_Os03g30530|transcript|LOC_Os03g30530.1|protein_coding|4/4|c.2030-197C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g30530|LOC_Os03g30530|transcript|LOC_Os03g30530.2|protein_coding|4/4|c.2027-197C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1569 3 17426889 SNP-3.17425670. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30530-LOC_Os03g30550|LOC_Os03g30530-LOC_Os03g30550|intergenic_region|LOC_Os03g30530-LOC_Os03g30550|||n.17426889C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1570 3 17428070 SNP-3.17426851. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30530-LOC_Os03g30550|LOC_Os03g30530-LOC_Os03g30550|intergenic_region|LOC_Os03g30530-LOC_Os03g30550|||n.17428070C>A|||||| GT 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1571 3 17428506 SNP-3.17427287. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30530-LOC_Os03g30550|LOC_Os03g30530-LOC_Os03g30550|intergenic_region|LOC_Os03g30530-LOC_Os03g30550|||n.17428506A>G|||||| GT 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/1 0/1 ./. 0/0 0/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1572 3 17430551 SNP-3.17429332. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30530-LOC_Os03g30550|LOC_Os03g30530-LOC_Os03g30550|intergenic_region|LOC_Os03g30530-LOC_Os03g30550|||n.17430551A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1573 3 17431115 SNP-3.17429896. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30530-LOC_Os03g30550|LOC_Os03g30530-LOC_Os03g30550|intergenic_region|LOC_Os03g30530-LOC_Os03g30550|||n.17431115C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1574 3 17432522 SNP-3.17431303. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30530-LOC_Os03g30550|LOC_Os03g30530-LOC_Os03g30550|intergenic_region|LOC_Os03g30530-LOC_Os03g30550|||n.17432522A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1575 3 17433999 SNP-3.17432780. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30530-LOC_Os03g30550|LOC_Os03g30530-LOC_Os03g30550|intergenic_region|LOC_Os03g30530-LOC_Os03g30550|||n.17433999C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1576 3 17435638 SNP-3.17434419. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30550|LOC_Os03g30550|transcript|LOC_Os03g30550.1|protein_coding|1/9|c.-2-123C>A|||||| GT ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1577 3 17436950 SNP-3.17435731. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30550|LOC_Os03g30550|transcript|LOC_Os03g30550.1|protein_coding|6/10|c.804C>A|p.Ser268Ser|962/2191|804/1467|268/488||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1578 3 17439104 SNP-3.17437885. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30550-LOC_Os03g30570|LOC_Os03g30550-LOC_Os03g30570|intergenic_region|LOC_Os03g30550-LOC_Os03g30570|||n.17439104A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1579 3 17442289 SNP-3.17441070. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30550-LOC_Os03g30570|LOC_Os03g30550-LOC_Os03g30570|intergenic_region|LOC_Os03g30550-LOC_Os03g30570|||n.17442289A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1580 3 17443632 SNP-3.17442413. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30550-LOC_Os03g30570|LOC_Os03g30550-LOC_Os03g30570|intergenic_region|LOC_Os03g30550-LOC_Os03g30570|||n.17443632A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1581 3 17447735 SNP-3.17446516. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30550-LOC_Os03g30570|LOC_Os03g30550-LOC_Os03g30570|intergenic_region|LOC_Os03g30550-LOC_Os03g30570|||n.17447735C>A|||||| GT ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/1 ./. ./. 1/1 ./. ./. 0/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1582 3 17448662 SNP-3.17447443. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30550-LOC_Os03g30570|LOC_Os03g30550-LOC_Os03g30570|intergenic_region|LOC_Os03g30550-LOC_Os03g30570|||n.17448662C>A|||||| GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1583 3 17450790 SNP-3.17449571. C A . . PR;ANN=A|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g30570|LOC_Os03g30570|transcript|LOC_Os03g30570.2|protein_coding|1/2|c.500-1C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g30570|LOC_Os03g30570|transcript|LOC_Os03g30570.1|protein_coding|1/1|c.499+536C>A||||||;LOF=(LOC_Os03g30570|LOC_Os03g30570|2|0.50) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1584 3 17455247 SNP-3.17454028. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30580|LOC_Os03g30580|transcript|LOC_Os03g30580.1|protein_coding|2/5|c.18T>C|p.Val6Val|404/1660|18/327|6/108||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 ./. 0/0 0/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/1 1/1 0/1 ./. 0/1 1/1 1/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1585 3 17456410 SNP-3.17455191. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30580|LOC_Os03g30580|transcript|LOC_Os03g30580.1|protein_coding|1/4|c.-19+154T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1586 3 17457271 SNP-3.17456052. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30580-LOC_Os03g30590|LOC_Os03g30580-LOC_Os03g30590|intergenic_region|LOC_Os03g30580-LOC_Os03g30590|||n.17457271C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1587 3 17461457 SNP-3.17460238. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30600|LOC_Os03g30600|transcript|LOC_Os03g30600.1|protein_coding|2/2|c.162A>G|p.Ser54Arg|162/720|162/720|54/239||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1588 3 17461629 SNP-3.17460410. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30600|LOC_Os03g30600|transcript|LOC_Os03g30600.1|protein_coding|2/2|c.334C>A|p.Leu112Met|334/720|334/720|112/239||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1589 3 17461871 SNP-3.17460652. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30600|LOC_Os03g30600|transcript|LOC_Os03g30600.1|protein_coding|2/2|c.576C>A|p.Ala192Ala|576/720|576/720|192/239||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1590 3 17462093 SNP-3.17460874. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30600-LOC_Os03g30610|LOC_Os03g30600-LOC_Os03g30610|intergenic_region|LOC_Os03g30600-LOC_Os03g30610|||n.17462093A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1591 3 17462213 SNP-3.17460994. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30600-LOC_Os03g30610|LOC_Os03g30600-LOC_Os03g30610|intergenic_region|LOC_Os03g30600-LOC_Os03g30610|||n.17462213C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1592 3 17462855 SNP-3.17461636. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30600-LOC_Os03g30610|LOC_Os03g30600-LOC_Os03g30610|intergenic_region|LOC_Os03g30600-LOC_Os03g30610|||n.17462855C>A|||||| GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1593 3 17464258 SNP-3.17463039. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30600-LOC_Os03g30610|LOC_Os03g30600-LOC_Os03g30610|intergenic_region|LOC_Os03g30600-LOC_Os03g30610|||n.17464258A>G|||||| GT 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1594 3 17465300 SNP-3.17464081. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30610-LOC_Os03g30620|LOC_Os03g30610-LOC_Os03g30620|intergenic_region|LOC_Os03g30610-LOC_Os03g30620|||n.17465300C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. 0/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1595 3 17466511 SNP-3.17465292. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30620|LOC_Os03g30620|transcript|LOC_Os03g30620.1|protein_coding|1/1|c.780G>T|p.Ser260Ser|780/945|780/945|260/314||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1596 3 17466634 SNP-3.17465415. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30620|LOC_Os03g30620|transcript|LOC_Os03g30620.1|protein_coding|1/1|c.657G>T|p.Lys219Asn|657/945|657/945|219/314|| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1597 3 17467370 SNP-3.17466151. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30620-LOC_Os03g30630|LOC_Os03g30620-LOC_Os03g30630|intergenic_region|LOC_Os03g30620-LOC_Os03g30630|||n.17467370C>A|||||| GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1598 3 17467718 SNP-3.17466499. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30620-LOC_Os03g30630|LOC_Os03g30620-LOC_Os03g30630|intergenic_region|LOC_Os03g30620-LOC_Os03g30630|||n.17467718C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1599 3 17467753 SNP-3.17466534. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30620-LOC_Os03g30630|LOC_Os03g30620-LOC_Os03g30630|intergenic_region|LOC_Os03g30620-LOC_Os03g30630|||n.17467753A>G|||||| GT ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1600 3 17468835 SNP-3.17467616. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30620-LOC_Os03g30630|LOC_Os03g30620-LOC_Os03g30630|intergenic_region|LOC_Os03g30620-LOC_Os03g30630|||n.17468835A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 |
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1601 3 17474014 SNP-3.17472795. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30650|LOC_Os03g30650|transcript|LOC_Os03g30650.1|protein_coding|1/1|c.548+325G>T|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1602 3 17476491 SNP-3.17475272. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30650-LOC_Os03g30660|LOC_Os03g30650-LOC_Os03g30660|intergenic_region|LOC_Os03g30650-LOC_Os03g30660|||n.17476491C>A|||||| GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1603 3 17480016 SNP-3.17478797. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30660-LOC_Os03g30670|LOC_Os03g30660-LOC_Os03g30670|intergenic_region|LOC_Os03g30660-LOC_Os03g30670|||n.17480016A>G|||||| GT ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1604 3 17488862 SNP-3.17487643. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30700|LOC_Os03g30700|transcript|LOC_Os03g30700.1|protein_coding|1/1|c.56-494A>G|||||| GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1605 3 17489382 SNP-3.17488163. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30700|LOC_Os03g30700|transcript|LOC_Os03g30700.1|protein_coding|2/2|c.82C>A|p.Thr28Thr|82/1230|82/1230|28/409||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1606 3 17489992 SNP-3.17488773. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30700|LOC_Os03g30700|transcript|LOC_Os03g30700.1|protein_coding|2/2|c.692A>G|p.Met231Arg|692/1230|692/1230|231/409||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1607 3 17493182 SNP-3.17491963. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30700-LOC_Os03g30710|LOC_Os03g30700-LOC_Os03g30710|intergenic_region|LOC_Os03g30700-LOC_Os03g30710|||n.17493182A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1608 3 17493629 SNP-3.17492410. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30700-LOC_Os03g30710|LOC_Os03g30700-LOC_Os03g30710|intergenic_region|LOC_Os03g30700-LOC_Os03g30710|||n.17493629C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1609 3 17493657 SNP-3.17492438. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30700-LOC_Os03g30710|LOC_Os03g30700-LOC_Os03g30710|intergenic_region|LOC_Os03g30700-LOC_Os03g30710|||n.17493657C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1610 3 17506280 SNP-3.17505061. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30710-LOC_Os03g30720|LOC_Os03g30710-LOC_Os03g30720|intergenic_region|LOC_Os03g30710-LOC_Os03g30720|||n.17506280A>G|||||| GT 1/1 0/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1611 3 17506439 SNP-3.17505220. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30710-LOC_Os03g30720|LOC_Os03g30710-LOC_Os03g30720|intergenic_region|LOC_Os03g30710-LOC_Os03g30720|||n.17506439C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1612 3 17506741 SNP-3.17505522. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30710-LOC_Os03g30720|LOC_Os03g30710-LOC_Os03g30720|intergenic_region|LOC_Os03g30710-LOC_Os03g30720|||n.17506741A>G|||||| GT 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. ./. 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/1 0/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1613 3 17507104 SNP-3.17505885. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30710-LOC_Os03g30720|LOC_Os03g30710-LOC_Os03g30720|intergenic_region|LOC_Os03g30710-LOC_Os03g30720|||n.17507104A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1614 3 17508035 SNP-3.17506816. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30710-LOC_Os03g30720|LOC_Os03g30710-LOC_Os03g30720|intergenic_region|LOC_Os03g30710-LOC_Os03g30720|||n.17508035C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1615 3 17508310 SNP-3.17507091. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30720|LOC_Os03g30720|transcript|LOC_Os03g30720.1|protein_coding|1/2|c.20A>G|p.Ala7Gly|20/1086|20/1086|7/361||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1616 3 17508325 SNP-3.17507106. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30720|LOC_Os03g30720|transcript|LOC_Os03g30720.1|protein_coding|1/2|c.35C>A|p.Arg12His|35/1086|35/1086|12/361||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1617 3 17509187 SNP-3.17507968. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30720|LOC_Os03g30720|transcript|LOC_Os03g30720.1|protein_coding|2/2|c.789C>A|p.Leu263Leu|789/1086|789/1086|263/361||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1618 3 17509214 SNP-3.17507995. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30720|LOC_Os03g30720|transcript|LOC_Os03g30720.1|protein_coding|2/2|c.816A>G|p.His272Gln|816/1086|816/1086|272/361||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1619 3 17509298 SNP-3.17508079. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30720|LOC_Os03g30720|transcript|LOC_Os03g30720.1|protein_coding|2/2|c.900A>G|p.Asp300Glu|900/1086|900/1086|300/361||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1620 3 17509481 SNP-3.17508262. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30720|LOC_Os03g30720|transcript|LOC_Os03g30720.1|protein_coding|2/2|c.1083A>G|p.Cys361Trp|1083/1086|1083/1086|361/361||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1621 3 17511061 SNP-3.17509842. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30730|LOC_Os03g30730|transcript|LOC_Os03g30730.1|protein_coding|2/4|c.280-39C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1622 3 17511335 SNP-3.17510116. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30730|LOC_Os03g30730|transcript|LOC_Os03g30730.1|protein_coding|3/4|c.395+120C>A|||||| GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1623 3 17511446 SNP-3.17510227. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30730|LOC_Os03g30730|transcript|LOC_Os03g30730.1|protein_coding|3/4|c.396-30C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1624 3 17511694 SNP-3.17510475. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30730|LOC_Os03g30730|transcript|LOC_Os03g30730.1|protein_coding|4/4|c.545+69C>A|||||| GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/1 0/0 ./. 0/1 1/1 0/0 1/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1625 3 17512310 SNP-3.17511091. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30730|LOC_Os03g30730|transcript|LOC_Os03g30730.1|protein_coding|5/5|c.696C>A|p.Lys232Lys|696/780|696/780|232/259||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1626 3 17512568 SNP-3.17511349. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30730-LOC_Os03g30740|LOC_Os03g30730-LOC_Os03g30740|intergenic_region|LOC_Os03g30730-LOC_Os03g30740|||n.17512568A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1627 3 17519704 SNP-3.17518485. A G . . PR;ANN=G|splice_region_variant&intron_variant|LOW|LOC_Os03g30740|LOC_Os03g30740|transcript|LOC_Os03g30740.1|protein_coding|4/9|c.598+7T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1628 3 17520597 SNP-3.17519378. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30740|LOC_Os03g30740|transcript|LOC_Os03g30740.1|protein_coding|2/9|c.125+39T>C|||||| GT 0/0 0/0 0/1 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1629 3 17520692 SNP-3.17519473. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30740|LOC_Os03g30740|transcript|LOC_Os03g30740.1|protein_coding|2/10|c.69G>T|p.Ser23Ser|217/1901|69/1311|23/436||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/1 0/0 0/1 ./. ./. 0/0 0/1 ./. ./. 0/1 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/1 ./. 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/1 ./. 0/1 0/1 0/1 ./. 0/1 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1630 3 17522136 SNP-3.17520917. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30744|LOC_Os03g30744|transcript|LOC_Os03g30744.1|protein_coding|2/2|c.215C>A|p.Pro72Gln|215/279|215/279|72/92|| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1631 3 17523387 SNP-3.17522168. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30744-LOC_Os03g30750|LOC_Os03g30744-LOC_Os03g30750|intergenic_region|LOC_Os03g30744-LOC_Os03g30750|||n.17523387C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1632 3 17524099 SNP-3.17522880. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30750|LOC_Os03g30750|transcript|LOC_Os03g30750.1|protein_coding|2/2|c.148-220T>C|||||| GT 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1633 3 17524982 SNP-3.17523763. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30750|LOC_Os03g30750|transcript|LOC_Os03g30750.1|protein_coding|2/2|c.147+516G>T|||||| GT 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1634 3 17527062 SNP-3.17525843. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30750-LOC_Os03g30760|LOC_Os03g30750-LOC_Os03g30760|intergenic_region|LOC_Os03g30750-LOC_Os03g30760|||n.17527062C>A|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1635 3 17527717 SNP-3.17526498. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30750-LOC_Os03g30760|LOC_Os03g30750-LOC_Os03g30760|intergenic_region|LOC_Os03g30750-LOC_Os03g30760|||n.17527717C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1636 3 17528096 SNP-3.17526877. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30750-LOC_Os03g30760|LOC_Os03g30750-LOC_Os03g30760|intergenic_region|LOC_Os03g30750-LOC_Os03g30760|||n.17528096A>G|||||| GT 0/0 0/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1637 3 17529059 SNP-3.17527840. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30750-LOC_Os03g30760|LOC_Os03g30750-LOC_Os03g30760|intergenic_region|LOC_Os03g30750-LOC_Os03g30760|||n.17529059C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1638 3 17532885 SNP-3.17531666. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30750-LOC_Os03g30760|LOC_Os03g30750-LOC_Os03g30760|intergenic_region|LOC_Os03g30750-LOC_Os03g30760|||n.17532885C>A|||||| GT ./. 1/1 1/1 ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/1 0/1 ./. 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. 0/1 0/1 ./. 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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1639 3 17533563 SNP-3.17532344. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30750-LOC_Os03g30760|LOC_Os03g30750-LOC_Os03g30760|intergenic_region|LOC_Os03g30750-LOC_Os03g30760|||n.17533563C>A|||||| GT ./. 1/1 0/1 1/1 ./. ./. ./. 1/1 0/1 0/1 1/1 ./. ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1640 3 17534470 SNP-3.17533251. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30750-LOC_Os03g30760|LOC_Os03g30750-LOC_Os03g30760|intergenic_region|LOC_Os03g30750-LOC_Os03g30760|||n.17534470C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1641 3 17535552 SNP-3.17534333. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30760|LOC_Os03g30760|transcript|LOC_Os03g30760.1|protein_coding|2/2|c.674T>C|p.Asp225Ala|674/1059|674/1059|225/352||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1642 3 17535974 SNP-3.17534755. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30760|LOC_Os03g30760|transcript|LOC_Os03g30760.1|protein_coding|2/2|c.252G>T|p.Pro84Pro|252/1059|252/1059|84/352||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1643 3 17537337 SNP-3.17536118. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30760|LOC_Os03g30760|transcript|LOC_Os03g30760.1|protein_coding|1/1|c.24+617T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1644 3 17537864 SNP-3.17536645. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30760|LOC_Os03g30760|transcript|LOC_Os03g30760.1|protein_coding|1/1|c.24+90G>T|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1645 3 17539868 SNP-3.17538649. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30760-LOC_Os03g30770|LOC_Os03g30760-LOC_Os03g30770|intergenic_region|LOC_Os03g30760-LOC_Os03g30770|||n.17539868A>G|||||| GT 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1646 3 17544513 SNP-3.17543294. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30760-LOC_Os03g30770|LOC_Os03g30760-LOC_Os03g30770|intergenic_region|LOC_Os03g30760-LOC_Os03g30770|||n.17544513C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1647 3 17548078 SNP-3.17546859. C A . . PR;ANN=A|start_lost|HIGH|LOC_Os03g30770|LOC_Os03g30770|transcript|LOC_Os03g30770.1|protein_coding|1/1|c.2C>A|p.Met1?|2/408|2/408|1/135||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g30770|LOC_Os03g30770|1|1.00) GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1648 3 17548141 SNP-3.17546922. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30770|LOC_Os03g30770|transcript|LOC_Os03g30770.1|protein_coding|1/1|c.65A>G|p.Pro22Arg|65/408|65/408|22/135||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1649 3 17549444 SNP-3.17548225. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30780|LOC_Os03g30780|transcript|LOC_Os03g30780.2|protein_coding|1/1|c.323C>A|p.Glu108Glu|474/1478|323/414|108/137||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1650 3 17552952 SNP-3.17551733. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30790|LOC_Os03g30790|transcript|LOC_Os03g30790.1|protein_coding|5/8|c.573+23T>C|||||| GT 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1651 3 17554980 SNP-3.17553761. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30790|LOC_Os03g30790|transcript|LOC_Os03g30790.1|protein_coding|1/8|c.184-884G>T|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1652 3 17559872 SNP-3.17558653. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30800|LOC_Os03g30800|transcript|LOC_Os03g30800.1|protein_coding|2/3|c.293-183A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1653 3 17560581 SNP-3.17559362. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30800|LOC_Os03g30800|transcript|LOC_Os03g30800.1|protein_coding|3/3|c.346-59A>G|||||| GT ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1654 3 17561005 SNP-3.17559786. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30800|LOC_Os03g30800|transcript|LOC_Os03g30800.1|protein_coding|4/4|c.711C>A|p.Leu237Leu|711/807|711/807|237/268||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1655 3 17561063 SNP-3.17559844. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30800|LOC_Os03g30800|transcript|LOC_Os03g30800.1|protein_coding|4/4|c.769A>G|p.Glu257Glu|769/807|769/807|257/268||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1656 3 17561435 SNP-3.17560216. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30800-LOC_Os03g30810|LOC_Os03g30800-LOC_Os03g30810|intergenic_region|LOC_Os03g30800-LOC_Os03g30810|||n.17561435C>A|||||| GT ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1657 3 17561589 SNP-3.17560370. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30800-LOC_Os03g30810|LOC_Os03g30800-LOC_Os03g30810|intergenic_region|LOC_Os03g30800-LOC_Os03g30810|||n.17561589A>G|||||| GT 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1658 3 17561662 SNP-3.17560443. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30800-LOC_Os03g30810|LOC_Os03g30800-LOC_Os03g30810|intergenic_region|LOC_Os03g30800-LOC_Os03g30810|||n.17561662C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1659 3 17562785 SNP-3.17561566. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30810|LOC_Os03g30810|transcript|LOC_Os03g30810.1|protein_coding|8/8|c.2488G>T|p.Asn830Tyr|2488/3411|2488/3411|830/1136||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1660 3 17562831 SNP-3.17561612. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30810|LOC_Os03g30810|transcript|LOC_Os03g30810.1|protein_coding|8/8|c.2442G>T|p.Tyr814Tyr|2442/3411|2442/3411|814/1136||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1661 3 17562934 SNP-3.17561715. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30810|LOC_Os03g30810|transcript|LOC_Os03g30810.1|protein_coding|8/8|c.2339T>C|p.Ala780Ala|2339/3411|2339/3411|780/1136||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1662 3 17563063 SNP-3.17561844. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30810|LOC_Os03g30810|transcript|LOC_Os03g30810.1|protein_coding|7/7|c.2236-26G>T|||||| GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/1 ./. 0/1 0/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1663 3 17563250 SNP-3.17562031. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30810|LOC_Os03g30810|transcript|LOC_Os03g30810.1|protein_coding|7/8|c.2116G>T|p.Thr706Ser|2116/3411|2116/3411|706/1136||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1664 3 17563979 SNP-3.17562760. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30810|LOC_Os03g30810|transcript|LOC_Os03g30810.1|protein_coding|5/7|c.1485-19G>T|||||| GT 0/0 0/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 ./. 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1665 3 17564067 SNP-3.17562848. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30810|LOC_Os03g30810|transcript|LOC_Os03g30810.1|protein_coding|5/7|c.1485-107G>T|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1666 3 17565100 SNP-3.17563881. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30810|LOC_Os03g30810|transcript|LOC_Os03g30810.1|protein_coding|2/7|c.912+51G>T|||||| GT 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 0/1 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1667 3 17565577 SNP-3.17564358. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30810|LOC_Os03g30810|transcript|LOC_Os03g30810.1|protein_coding|1/8|c.521T>C|p.Gln174Pro|521/3411|521/3411|174/1136||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/1 ./. ./. ./. ./. ./. ./. ./. 1/1 0/1 1/1 ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1668 3 17566239 SNP-3.17565020. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30810-LOC_Os03g30830|LOC_Os03g30810-LOC_Os03g30830|intergenic_region|LOC_Os03g30810-LOC_Os03g30830|||n.17566239C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1669 3 17569115 SNP-3.17567896. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30810-LOC_Os03g30830|LOC_Os03g30810-LOC_Os03g30830|intergenic_region|LOC_Os03g30810-LOC_Os03g30830|||n.17569115C>A|||||| GT 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/1 ./. ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1670 3 17569291 SNP-3.17568072. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30810-LOC_Os03g30830|LOC_Os03g30810-LOC_Os03g30830|intergenic_region|LOC_Os03g30810-LOC_Os03g30830|||n.17569291C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1671 3 17571662 SNP-3.17570443. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30830|LOC_Os03g30830|transcript|LOC_Os03g30830.1|protein_coding|2/4|c.87T>C|p.Arg29Arg|352/1179|87/567|29/188||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/1 0/0 1/1 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1672 3 17572718 SNP-3.17571499. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30830-LOC_Os03g30840|LOC_Os03g30830-LOC_Os03g30840|intergenic_region|LOC_Os03g30830-LOC_Os03g30840|||n.17572718C>A|||||| GT 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1673 3 17575636 SNP-3.17574417. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30830-LOC_Os03g30840|LOC_Os03g30830-LOC_Os03g30840|intergenic_region|LOC_Os03g30830-LOC_Os03g30840|||n.17575636C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1674 3 17576639 SNP-3.17575420. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30840|LOC_Os03g30840|transcript|LOC_Os03g30840.1|protein_coding|1/1|c.117A>G|p.Gly39Gly|578/1116|117/540|39/179||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 ./. ./. 0/0 1/1 ./. ./. ./. 0/1 ./. 0/0 0/0 0/1 0/1 0/1 0/1 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/1 1/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1675 3 17576948 SNP-3.17575729. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30840|LOC_Os03g30840|transcript|LOC_Os03g30840.1|protein_coding|1/1|c.426C>A|p.Ser142Ser|887/1116|426/540|142/179||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1676 3 17576971 SNP-3.17575752. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30840|LOC_Os03g30840|transcript|LOC_Os03g30840.1|protein_coding|1/1|c.449A>G|p.Thr150Arg|910/1116|449/540|150/179||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. ./. 0/0 0/0 ./. 1/1 0/1 0/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 0/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 0/1 0/1 1/1 0/1 0/1 0/0 0/1 ./. 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1677 3 17577331 SNP-3.17576112. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30840-LOC_Os03g30850|LOC_Os03g30840-LOC_Os03g30850|intergenic_region|LOC_Os03g30840-LOC_Os03g30850|||n.17577331C>A|||||| GT 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1678 3 17578832 SNP-3.17577613. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30840-LOC_Os03g30850|LOC_Os03g30840-LOC_Os03g30850|intergenic_region|LOC_Os03g30840-LOC_Os03g30850|||n.17578832A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1679 3 17579282 SNP-3.17578063. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30840-LOC_Os03g30850|LOC_Os03g30840-LOC_Os03g30850|intergenic_region|LOC_Os03g30840-LOC_Os03g30850|||n.17579282C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1680 3 17579520 SNP-3.17578301. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30840-LOC_Os03g30850|LOC_Os03g30840-LOC_Os03g30850|intergenic_region|LOC_Os03g30840-LOC_Os03g30850|||n.17579520C>A|||||| GT 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1681 3 17580566 SNP-3.17579347. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30840-LOC_Os03g30850|LOC_Os03g30840-LOC_Os03g30850|intergenic_region|LOC_Os03g30840-LOC_Os03g30850|||n.17580566C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1682 3 17580647 SNP-3.17579428. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30840-LOC_Os03g30850|LOC_Os03g30840-LOC_Os03g30850|intergenic_region|LOC_Os03g30840-LOC_Os03g30850|||n.17580647C>A|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1683 3 17582407 SNP-3.17581188. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30850-LOC_Os03g30860|LOC_Os03g30850-LOC_Os03g30860|intergenic_region|LOC_Os03g30850-LOC_Os03g30860|||n.17582407A>G|||||| GT ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/1 0/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1684 3 17588477 SNP-3.17587258. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30870|LOC_Os03g30870|transcript|LOC_Os03g30870.1|protein_coding|1/2|c.275A>G|p.Glu92Gly|275/966|275/966|92/321|| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/1 1/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1685 3 17589116 SNP-3.17587897. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30870|LOC_Os03g30870|transcript|LOC_Os03g30870.1|protein_coding|2/2|c.873C>A|p.Gly291Gly|873/966|873/966|291/321|| GT 0/0 0/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1686 3 17590927 SNP-3.17589708. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17590927C>A|||||| GT 0/0 0/0 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 ./. 0/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1687 3 17591211 SNP-3.17589992. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17591211C>A|||||| GT 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1688 3 17591506 SNP-3.17590287cg. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17591506C>A|||||| GT 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1689 3 17591879 SNP-3.17590660. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17591879A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1690 3 17592358 SNP-3.17591139. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17592358A>G|||||| GT 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1691 3 17593386 SNP-3.17592167. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17593386A>G|||||| GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1692 3 17593464 SNP-3.17592245. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17593464C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
diff
changeset
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1693 3 17594845 SNP-3.17593626. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17594845C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1694 3 17595808 SNP-3.17594589. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17595808C>A|||||| GT 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
diff
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1695 3 17596615 SNP-3.17595396. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30870-LOC_Os03g30880|LOC_Os03g30870-LOC_Os03g30880|intergenic_region|LOC_Os03g30870-LOC_Os03g30880|||n.17596615C>A|||||| GT ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 0/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. 0/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1696 3 17598380 SNP-3.17597161. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30880|LOC_Os03g30880|transcript|LOC_Os03g30880.1|protein_coding|1/2|c.139-68T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1697 3 17598768 SNP-3.17597549. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30880-LOC_Os03g30890|LOC_Os03g30880-LOC_Os03g30890|intergenic_region|LOC_Os03g30880-LOC_Os03g30890|||n.17598768C>A|||||| GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1698 3 17599074 SNP-3.17597855. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30880-LOC_Os03g30890|LOC_Os03g30880-LOC_Os03g30890|intergenic_region|LOC_Os03g30880-LOC_Os03g30890|||n.17599074A>G|||||| GT 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/1 0/1 0/1 0/1 0/1 ./. 0/0 ./. 0/1 1/1 1/1 ./. 0/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/1 0/1 0/0 ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/1 ./. 0/1 0/1 ./. ./. ./. ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1699 3 17600387 SNP-3.17599168. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30890|LOC_Os03g30890|transcript|LOC_Os03g30890.1|protein_coding|1/1|c.-79-378A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g30890|LOC_Os03g30890|transcript|LOC_Os03g30890.2|protein_coding|1/1|c.-183-637A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1700 3 17602120 SNP-3.17600901. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g30890|LOC_Os03g30890|transcript|LOC_Os03g30890.1|protein_coding|2/2|c.1277A>G|p.Asn426Ser|1513/2925|1277/2571|426/856||,G|missense_variant|MODERATE|LOC_Os03g30890|LOC_Os03g30890|transcript|LOC_Os03g30890.2|protein_coding|2/2|c.914A>G|p.Asn305Ser|1254/2666|914/2208|305/735|| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1701 3 17602951 SNP-3.17601732. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30890|LOC_Os03g30890|transcript|LOC_Os03g30890.1|protein_coding|2/2|c.2108A>G|p.Arg703Arg|2344/2925|2108/2571|703/856||WARNING_REF_DOES_NOT_MATCH_GENOME,G|synonymous_variant|LOW|LOC_Os03g30890|LOC_Os03g30890|transcript|LOC_Os03g30890.2|protein_coding|2/2|c.1745A>G|p.Arg582Arg|2085/2666|1745/2208|582/735||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1702 3 17603083 SNP-3.17601864. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30890|LOC_Os03g30890|transcript|LOC_Os03g30890.1|protein_coding|2/2|c.2240C>A|p.Ser747Asn|2476/2925|2240/2571|747/856||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g30890|LOC_Os03g30890|transcript|LOC_Os03g30890.2|protein_coding|2/2|c.1877C>A|p.Ser626Asn|2217/2666|1877/2208|626/735||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1703 3 17605753 SNP-3.17604534. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g30910|LOC_Os03g30910|transcript|LOC_Os03g30910.1|protein_coding|1/2|c.482A>G|p.Cys161Cys|482/2325|482/2325|161/774||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1704 3 17606218 SNP-3.17604999. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30910|LOC_Os03g30910|transcript|LOC_Os03g30910.1|protein_coding|1/1|c.892+55C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1705 3 17606459 SNP-3.17605240. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30910|LOC_Os03g30910|transcript|LOC_Os03g30910.1|protein_coding|2/2|c.1033C>A|p.Cys345Ser|1033/2325|1033/2325|345/774||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1706 3 17607362 SNP-3.17606143. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30910|LOC_Os03g30910|transcript|LOC_Os03g30910.1|protein_coding|2/2|c.1936C>A|p.Gln646Lys|1936/2325|1936/2325|646/774|| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1707 3 17607398 SNP-3.17606179. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g30910|LOC_Os03g30910|transcript|LOC_Os03g30910.1|protein_coding|2/2|c.1972C>A|p.Cys658Ser|1972/2325|1972/2325|658/774||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1708 3 17607425 SNP-3.17606206. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30910|LOC_Os03g30910|transcript|LOC_Os03g30910.1|protein_coding|2/2|c.1999C>A|p.Lys667Lys|1999/2325|1999/2325|667/774||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1709 3 17610485 SNP-3.17609266. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30910-LOC_Os03g30920|LOC_Os03g30910-LOC_Os03g30920|intergenic_region|LOC_Os03g30910-LOC_Os03g30920|||n.17610485C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1710 3 17610961 SNP-3.17609742. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30910-LOC_Os03g30920|LOC_Os03g30910-LOC_Os03g30920|intergenic_region|LOC_Os03g30910-LOC_Os03g30920|||n.17610961C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 0/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1711 3 17611345 SNP-3.17610126. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g30920|LOC_Os03g30920|transcript|LOC_Os03g30920.1|protein_coding|1/2|c.-348A>G|||||1421|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1712 3 17613346 SNP-3.17612127. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30920|LOC_Os03g30920|transcript|LOC_Os03g30920.1|protein_coding|2/2|c.581C>A|p.Gln194Gln|930/1244|581/753|194/250||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1713 3 17614049 SNP-3.17612830. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30920-LOC_Os03g30934|LOC_Os03g30920-LOC_Os03g30934|intergenic_region|LOC_Os03g30920-LOC_Os03g30934|||n.17614049C>A|||||| GT 0/1 1/1 ./. 0/1 0/0 0/0 0/1 0/1 1/1 0/1 0/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1714 3 17615482 SNP-3.17614263. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30920-LOC_Os03g30934|LOC_Os03g30920-LOC_Os03g30934|intergenic_region|LOC_Os03g30920-LOC_Os03g30934|||n.17615482A>G|||||| GT 0/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 ./. 1/1 ./. ./. ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1715 3 17616753 SNP-3.17615534. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.1|protein_coding|6/6|c.514-15T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.5|protein_coding|5/5|c.514-15T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.2|protein_coding|5/5|c.514-15T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.3|protein_coding|6/6|c.*3-15T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.4|protein_coding|6/6|c.514-15T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1716 3 17621240 SNP-3.17620021. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.1|protein_coding|1/6|c.-389-574T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.3|protein_coding|1/6|c.-389-574T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.4|protein_coding|1/6|c.-358-574T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1717 3 17621876 SNP-3.17620657. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.1|protein_coding|1/6|c.-390+157G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.3|protein_coding|1/6|c.-390+157G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.4|protein_coding|1/6|c.-359+157G>T|||||| GT ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 ./. ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1718 3 17621997 SNP-3.17620778. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.1|protein_coding|1/6|c.-390+36G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.3|protein_coding|1/6|c.-390+36G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g30934|LOC_Os03g30934|transcript|LOC_Os03g30934.4|protein_coding|1/6|c.-359+36G>T|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1719 3 17623026 SNP-3.17621807. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30934-LOC_Os03g30950|LOC_Os03g30934-LOC_Os03g30950|intergenic_region|LOC_Os03g30934-LOC_Os03g30950|||n.17623026C>A|||||| GT 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1720 3 17623785 SNP-3.17622566. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30950|LOC_Os03g30950|transcript|LOC_Os03g30950.1|protein_coding|2/2|c.1209G>T|p.Ala403Ala|1238/1598|1209/1257|403/418||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1721 3 17625611 SNP-3.17624392. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30950-LOC_Os03g30970|LOC_Os03g30950-LOC_Os03g30970|intergenic_region|LOC_Os03g30950-LOC_Os03g30970|||n.17625611A>G|||||| GT 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1722 3 17626123 SNP-3.17624904. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30950-LOC_Os03g30970|LOC_Os03g30950-LOC_Os03g30970|intergenic_region|LOC_Os03g30950-LOC_Os03g30970|||n.17626123C>A|||||| GT ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1723 3 17627375 SNP-3.17626156. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30950-LOC_Os03g30970|LOC_Os03g30950-LOC_Os03g30970|intergenic_region|LOC_Os03g30950-LOC_Os03g30970|||n.17627375C>A|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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1724 3 17634856 SNP-3.17633637. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30970-LOC_Os03g30980|LOC_Os03g30970-LOC_Os03g30980|intergenic_region|LOC_Os03g30970-LOC_Os03g30980|||n.17634856A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1725 3 17634974 SNP-3.17633755. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30970-LOC_Os03g30980|LOC_Os03g30970-LOC_Os03g30980|intergenic_region|LOC_Os03g30970-LOC_Os03g30980|||n.17634974C>A|||||| GT ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1726 3 17635011 SNP-3.17633792. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30970-LOC_Os03g30980|LOC_Os03g30970-LOC_Os03g30980|intergenic_region|LOC_Os03g30970-LOC_Os03g30980|||n.17635011A>G|||||| GT ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/1 0/1 0/0 1/1 ./. 0/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 |
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1727 3 17636302 SNP-3.17635083. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30970-LOC_Os03g30980|LOC_Os03g30970-LOC_Os03g30980|intergenic_region|LOC_Os03g30970-LOC_Os03g30980|||n.17636302C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1728 3 17639132 SNP-3.17637913. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g30970-LOC_Os03g30980|LOC_Os03g30970-LOC_Os03g30980|intergenic_region|LOC_Os03g30970-LOC_Os03g30980|||n.17639132A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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1729 3 17639226 SNP-3.17638007. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30970-LOC_Os03g30980|LOC_Os03g30970-LOC_Os03g30980|intergenic_region|LOC_Os03g30970-LOC_Os03g30980|||n.17639226C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 1/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1730 3 17642147 SNP-3.17640928. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30970-LOC_Os03g30980|LOC_Os03g30970-LOC_Os03g30980|intergenic_region|LOC_Os03g30970-LOC_Os03g30980|||n.17642147C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1731 3 17643112 SNP-3.17641893. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30970-LOC_Os03g30980|LOC_Os03g30970-LOC_Os03g30980|intergenic_region|LOC_Os03g30970-LOC_Os03g30980|||n.17643112C>A|||||| GT ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1732 3 17643875 SNP-3.17642656. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g30970-LOC_Os03g30980|LOC_Os03g30970-LOC_Os03g30980|intergenic_region|LOC_Os03g30970-LOC_Os03g30980|||n.17643875C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1733 3 17644445 SNP-3.17643226. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g30980|LOC_Os03g30980|transcript|LOC_Os03g30980.1|protein_coding|1/5|c.57+364A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1734 3 17644856 SNP-3.17643637. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g30980|LOC_Os03g30980|transcript|LOC_Os03g30980.1|protein_coding|1/5|c.58-126C>A|||||| GT ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1735 3 17647013 SNP-3.17645794. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30980|LOC_Os03g30980|transcript|LOC_Os03g30980.1|protein_coding|5/6|c.1317C>A|p.Gly439Gly|1317/1887|1317/1887|439/628|| GT 0/0 1/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1736 3 17650140 SNP-3.17648921. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g30990|LOC_Os03g30990|transcript|LOC_Os03g30990.1|protein_coding|7/8|c.3255G>T|p.Ala1085Ala|3255/4644|3255/4644|1085/1547||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1737 3 17662282 SNP-3.17661063. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31000|LOC_Os03g31000|transcript|LOC_Os03g31000.1|protein_coding|5/12|c.441C>A|p.Pro147Pro|441/2079|441/2079|147/692||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1738 3 17664128 SNP-3.17662909. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31000|LOC_Os03g31000|transcript|LOC_Os03g31000.1|protein_coding|8/11|c.765+1161A>G|||||| GT 0/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/1 ./. 0/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/1 0/1 0/1 1/1 1/1 0/1 0/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/1 0/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1739 3 17667100 SNP-3.17665881. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31000|LOC_Os03g31000|transcript|LOC_Os03g31000.1|protein_coding|11/12|c.1803C>A|p.Phe601Leu|1803/2079|1803/2079|601/692||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1740 3 17667874 SNP-3.17666655. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31000-LOC_Os03g31010|LOC_Os03g31000-LOC_Os03g31010|intergenic_region|LOC_Os03g31000-LOC_Os03g31010|||n.17667874C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/1 1/1 0/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1741 3 17670005 SNP-3.17668786. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31010|LOC_Os03g31010|transcript|LOC_Os03g31010.1|protein_coding|2/10|c.303+352A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1742 3 17671978 SNP-3.17670759. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31010|LOC_Os03g31010|transcript|LOC_Os03g31010.1|protein_coding|7/11|c.1006A>G|p.Ala336Ala|1006/1885|1006/1578|336/525||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1743 3 17672027 SNP-3.17670808. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31010|LOC_Os03g31010|transcript|LOC_Os03g31010.1|protein_coding|7/10|c.1023+32A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1744 3 17675851 SNP-3.17674632. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g31026|LOC_Os03g31026|transcript|LOC_Os03g31026.1|protein_coding|1/4|c.-736A>G|||||847|,G|5_prime_UTR_variant|MODIFIER|LOC_Os03g31026|LOC_Os03g31026|transcript|LOC_Os03g31026.2|protein_coding|1/3|c.-736A>G|||||847| GT 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1745 3 17676214 SNP-3.17674995. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g31026|LOC_Os03g31026|transcript|LOC_Os03g31026.1|protein_coding|2/4|c.-484C>A|||||484|WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g31026|LOC_Os03g31026|transcript|LOC_Os03g31026.2|protein_coding|2/3|c.-484C>A|||||484|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1746 3 17676653 SNP-3.17675434. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g31026|LOC_Os03g31026|transcript|LOC_Os03g31026.1|protein_coding|2/4|c.-45A>G|||||45|WARNING_REF_DOES_NOT_MATCH_GENOME,G|5_prime_UTR_variant|MODIFIER|LOC_Os03g31026|LOC_Os03g31026|transcript|LOC_Os03g31026.2|protein_coding|2/3|c.-45A>G|||||45|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 1/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1747 3 17678550 SNP-3.17677331. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31026-LOC_Os03g31044|LOC_Os03g31026-LOC_Os03g31044|intergenic_region|LOC_Os03g31026-LOC_Os03g31044|||n.17678550A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1748 3 17678991 SNP-3.17677772. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31026-LOC_Os03g31044|LOC_Os03g31026-LOC_Os03g31044|intergenic_region|LOC_Os03g31026-LOC_Os03g31044|||n.17678991C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1749 3 17683160 SNP-3.17681941. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31044|LOC_Os03g31044|transcript|LOC_Os03g31044.2|protein_coding|10/12|c.1052T>C|p.His351Pro|1120/1919|1052/1851|351/616||WARNING_REF_DOES_NOT_MATCH_GENOME,G|5_prime_UTR_variant|MODIFIER|LOC_Os03g31044|LOC_Os03g31044|transcript|LOC_Os03g31044.1|protein_coding|8/9|c.-526T>C|||||526|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1750 3 17683326 SNP-3.17682107. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31044|LOC_Os03g31044|transcript|LOC_Os03g31044.2|protein_coding|9/11|c.902-16T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g31044|LOC_Os03g31044|transcript|LOC_Os03g31044.1|protein_coding|7/8|c.-676-16T>C|||||| GT 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1751 3 17687960 SNP-3.17686741. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31044|LOC_Os03g31044|transcript|LOC_Os03g31044.2|protein_coding|1/11|c.49-52T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g31044|LOC_Os03g31044|transcript|LOC_Os03g31044.1|protein_coding|1/8|c.-1796-52T>C|||||| GT 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/1 ./. ./. 0/1 0/1 1/1 0/0 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1752 3 17688883 SNP-3.17687664. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31044-LOC_Os03g31060|LOC_Os03g31044-LOC_Os03g31060|intergenic_region|LOC_Os03g31044-LOC_Os03g31060|||n.17688883A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1753 3 17689826 SNP-3.17688607. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31044-LOC_Os03g31060|LOC_Os03g31044-LOC_Os03g31060|intergenic_region|LOC_Os03g31044-LOC_Os03g31060|||n.17689826C>A|||||| GT 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1754 3 17691873 SNP-3.17690654. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31044-LOC_Os03g31060|LOC_Os03g31044-LOC_Os03g31060|intergenic_region|LOC_Os03g31044-LOC_Os03g31060|||n.17691873C>A|||||| GT 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/1 1/1 ./. 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1755 3 17692504 SNP-3.17691285. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31044-LOC_Os03g31060|LOC_Os03g31044-LOC_Os03g31060|intergenic_region|LOC_Os03g31044-LOC_Os03g31060|||n.17692504C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1756 3 17695096 SNP-3.17693877. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31044-LOC_Os03g31060|LOC_Os03g31044-LOC_Os03g31060|intergenic_region|LOC_Os03g31044-LOC_Os03g31060|||n.17695096A>G|||||| GT 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1757 3 17697028 SNP-3.17695809. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|3/7|c.183C>A|p.Gly61Gly|183/1857|183/1857|61/618||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1758 3 17697157 SNP-3.17695938. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|3/7|c.312C>A|p.Pro104Pro|312/1857|312/1857|104/618||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1759 3 17697224 SNP-3.17696005. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|3/7|c.379A>G|p.Gly127Gly|379/1857|379/1857|127/618||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1760 3 17697781 SNP-3.17696562. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|4/7|c.645A>G|p.Leu215Leu|645/1857|645/1857|215/618||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1761 3 17697883 SNP-3.17696664. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|4/7|c.747C>A|p.Leu249Leu|747/1857|747/1857|249/618||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1762 3 17698451 SNP-3.17697232. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|6/7|c.948C>A|p.Ile316Ile|948/1857|948/1857|316/618|| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1763 3 17698502 SNP-3.17697283. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|6/7|c.999C>A|p.Phe333Leu|999/1857|999/1857|333/618||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1764 3 17698841 SNP-3.17697622. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|6/7|c.1338C>A|p.Tyr446*|1338/1857|1338/1857|446/618||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g31060|LOC_Os03g31060|1|1.00);NMD=(LOC_Os03g31060|LOC_Os03g31060|1|1.00) GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1765 3 17698925 SNP-3.17697706. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|6/7|c.1422C>A|p.Ala474Ala|1422/1857|1422/1857|474/618||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1766 3 17699075 SNP-3.17697856. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31060|LOC_Os03g31060|transcript|LOC_Os03g31060.1|protein_coding|6/7|c.1572C>A|p.Leu524Leu|1572/1857|1572/1857|524/618||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1767 3 17700323 SNP-3.17699104. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31060-LOC_Os03g31070|LOC_Os03g31060-LOC_Os03g31070|intergenic_region|LOC_Os03g31060-LOC_Os03g31070|||n.17700323C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1768 3 17700524 SNP-3.17699305. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31060-LOC_Os03g31070|LOC_Os03g31060-LOC_Os03g31070|intergenic_region|LOC_Os03g31060-LOC_Os03g31070|||n.17700524C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1769 3 17702270 SNP-3.17701051. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31060-LOC_Os03g31070|LOC_Os03g31060-LOC_Os03g31070|intergenic_region|LOC_Os03g31060-LOC_Os03g31070|||n.17702270C>A|||||| GT 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1770 3 17702415 SNP-3.17701196. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31060-LOC_Os03g31070|LOC_Os03g31060-LOC_Os03g31070|intergenic_region|LOC_Os03g31060-LOC_Os03g31070|||n.17702415C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1771 3 17710758 SNP-3.17709539. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31070-LOC_Os03g31090|LOC_Os03g31070-LOC_Os03g31090|intergenic_region|LOC_Os03g31070-LOC_Os03g31090|||n.17710758A>G|||||| GT ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1772 3 17710982 SNP-3.17709763. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31070-LOC_Os03g31090|LOC_Os03g31070-LOC_Os03g31090|intergenic_region|LOC_Os03g31070-LOC_Os03g31090|||n.17710982C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1773 3 17713163 SNP-3.17711944. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31070-LOC_Os03g31090|LOC_Os03g31070-LOC_Os03g31090|intergenic_region|LOC_Os03g31070-LOC_Os03g31090|||n.17713163A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1774 3 17714585 SNP-3.17713366. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31070-LOC_Os03g31090|LOC_Os03g31070-LOC_Os03g31090|intergenic_region|LOC_Os03g31070-LOC_Os03g31090|||n.17714585C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1775 3 17714710 SNP-3.17713491. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31070-LOC_Os03g31090|LOC_Os03g31070-LOC_Os03g31090|intergenic_region|LOC_Os03g31070-LOC_Os03g31090|||n.17714710C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1776 3 17716008 SNP-3.17714789. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31090|LOC_Os03g31090|transcript|LOC_Os03g31090.1|protein_coding|2/3|c.181+59A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1777 3 17717694 SNP-3.17716475. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31090-LOC_Os03g31110|LOC_Os03g31090-LOC_Os03g31110|intergenic_region|LOC_Os03g31090-LOC_Os03g31110|||n.17717694C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1778 3 17717750 SNP-3.17716531. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31090-LOC_Os03g31110|LOC_Os03g31090-LOC_Os03g31110|intergenic_region|LOC_Os03g31090-LOC_Os03g31110|||n.17717750C>A|||||| GT 0/0 1/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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1779 3 17718986 SNP-3.17717767. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31090-LOC_Os03g31110|LOC_Os03g31090-LOC_Os03g31110|intergenic_region|LOC_Os03g31090-LOC_Os03g31110|||n.17718986C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1780 3 17721273 SNP-3.17720054. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31110|LOC_Os03g31110|transcript|LOC_Os03g31110.1|protein_coding|2/4|c.539G>T|p.Ser180Ile|1228/2848|539/1254|180/417||,A|missense_variant|MODERATE|LOC_Os03g31110|LOC_Os03g31110|transcript|LOC_Os03g31110.2|protein_coding|2/3|c.539G>T|p.Ser180Ile|1210/3204|539/1254|180/417|| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1781 3 17721786 SNP-3.17720567. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31110|LOC_Os03g31110|transcript|LOC_Os03g31110.1|protein_coding|2/4|c.26G>T|p.Ser9Phe|715/2848|26/1254|9/417||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g31110|LOC_Os03g31110|transcript|LOC_Os03g31110.2|protein_coding|2/3|c.26G>T|p.Ser9Phe|697/3204|26/1254|9/417||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1782 3 17723480 SNP-3.17722261. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31120|LOC_Os03g31120|transcript|LOC_Os03g31120.1|protein_coding|3/3|c.534G>T|p.Gly178Gly|534/609|534/609|178/202|| GT 0/0 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/1 ./. 0/1 ./. ./. 0/1 0/0 0/1 1/1 0/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1783 3 17723948 SNP-3.17722729. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31120|LOC_Os03g31120|transcript|LOC_Os03g31120.1|protein_coding|1/2|c.397-22G>T|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1784 3 17725427 SNP-3.17724208. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31120-LOC_Os03g31134|LOC_Os03g31120-LOC_Os03g31134|intergenic_region|LOC_Os03g31120-LOC_Os03g31134|||n.17725427C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1785 3 17725668 SNP-3.17724449. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31120-LOC_Os03g31134|LOC_Os03g31120-LOC_Os03g31134|intergenic_region|LOC_Os03g31120-LOC_Os03g31134|||n.17725668C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1786 3 17729295 SNP-3.17728076. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31134|LOC_Os03g31134|transcript|LOC_Os03g31134.1|protein_coding|4/5|c.427-50C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/1 1/1 1/1 ./. 0/1 ./. ./. ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1787 3 17729801 SNP-3.17728582. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31134|LOC_Os03g31134|transcript|LOC_Os03g31134.1|protein_coding|5/5|c.521+362C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1788 3 17737118 SNP-3.17735899. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31134-LOC_Os03g31150|LOC_Os03g31134-LOC_Os03g31150|intergenic_region|LOC_Os03g31134-LOC_Os03g31150|||n.17737118C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1789 3 17737696 SNP-3.17736477. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31134-LOC_Os03g31150|LOC_Os03g31134-LOC_Os03g31150|intergenic_region|LOC_Os03g31134-LOC_Os03g31150|||n.17737696C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1790 3 17739317 SNP-3.17738098. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31150|LOC_Os03g31150|transcript|LOC_Os03g31150.1|protein_coding|1/3|c.1119C>A|p.Val373Val|1252/2968|1119/1923|373/640||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g31150|LOC_Os03g31150|transcript|LOC_Os03g31150.3|protein_coding|1/4|c.1119C>A|p.Val373Val|1237/2704|1119/1923|373/640||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g31150|LOC_Os03g31150|transcript|LOC_Os03g31150.2|protein_coding|1/4|c.1119C>A|p.Val373Val|1237/2519|1119/1923|373/640||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1791 3 17740471 SNP-3.17739252. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31150|LOC_Os03g31150|transcript|LOC_Os03g31150.1|protein_coding|2/2|c.1852-133C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31150|LOC_Os03g31150|transcript|LOC_Os03g31150.3|protein_coding|2/3|c.1852-133C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31150|LOC_Os03g31150|transcript|LOC_Os03g31150.2|protein_coding|2/3|c.1852-133C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1792 3 17741343 SNP-3.17740124. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g31150|LOC_Os03g31150|transcript|LOC_Os03g31150.1|protein_coding|3/3|c.*668A>G|||||668|,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g31150|LOC_Os03g31150|transcript|LOC_Os03g31150.3|protein_coding|4/4|c.*421A>G|||||668|,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g31150|LOC_Os03g31150|transcript|LOC_Os03g31150.2|protein_coding|4/4|c.*229A>G|||||668| GT ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1793 3 17743311 SNP-3.17742092ga. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31160|LOC_Os03g31160|transcript|LOC_Os03g31160.1|protein_coding|2/2|c.*296-407A>G|||||| GT ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/1 ./. 1/1 1/1 ./. 0/1 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1794 3 17743358 SNP-3.17742139. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31160|LOC_Os03g31160|transcript|LOC_Os03g31160.1|protein_coding|2/2|c.*296-360A>G|||||| GT ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1795 3 17744426 SNP-3.17743207. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31160-LOC_Os03g31170|LOC_Os03g31160-LOC_Os03g31170|intergenic_region|LOC_Os03g31160-LOC_Os03g31170|||n.17744426A>G|||||| GT ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1796 3 17746158 SNP-3.17744939. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31170|LOC_Os03g31170|transcript|LOC_Os03g31170.1|protein_coding|8/8|c.857+130G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g31170|LOC_Os03g31170|transcript|LOC_Os03g31170.3|protein_coding|7/7|c.*225+130G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g31170|LOC_Os03g31170|transcript|LOC_Os03g31170.2|protein_coding|7/7|c.722-401G>T|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1797 3 17749213 SNP-3.17747994. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31170-LOC_Os03g31180|LOC_Os03g31170-LOC_Os03g31180|intergenic_region|LOC_Os03g31170-LOC_Os03g31180|||n.17749213C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1798 3 17749696 SNP-3.17748477. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31170-LOC_Os03g31180|LOC_Os03g31170-LOC_Os03g31180|intergenic_region|LOC_Os03g31170-LOC_Os03g31180|||n.17749696A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1799 3 17749998 SNP-3.17748779. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31170-LOC_Os03g31180|LOC_Os03g31170-LOC_Os03g31180|intergenic_region|LOC_Os03g31170-LOC_Os03g31180|||n.17749998A>G|||||| GT ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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changeset
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1800 3 17750962 SNP-3.17749743. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31170-LOC_Os03g31180|LOC_Os03g31170-LOC_Os03g31180|intergenic_region|LOC_Os03g31170-LOC_Os03g31180|||n.17750962A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1801 3 17752329 SNP-3.17751110. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31170-LOC_Os03g31180|LOC_Os03g31170-LOC_Os03g31180|intergenic_region|LOC_Os03g31170-LOC_Os03g31180|||n.17752329C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1802 3 17752493 SNP-3.17751274. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31170-LOC_Os03g31180|LOC_Os03g31170-LOC_Os03g31180|intergenic_region|LOC_Os03g31170-LOC_Os03g31180|||n.17752493C>A|||||| GT 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. ./. 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1803 3 17752871 SNP-3.17751652. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31170-LOC_Os03g31180|LOC_Os03g31170-LOC_Os03g31180|intergenic_region|LOC_Os03g31170-LOC_Os03g31180|||n.17752871A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1804 3 17753299 SNP-3.17752080. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31170-LOC_Os03g31180|LOC_Os03g31170-LOC_Os03g31180|intergenic_region|LOC_Os03g31170-LOC_Os03g31180|||n.17753299C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1805 3 17753741 SNP-3.17752522. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31170-LOC_Os03g31180|LOC_Os03g31170-LOC_Os03g31180|intergenic_region|LOC_Os03g31170-LOC_Os03g31180|||n.17753741C>A|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1806 3 17755529 SNP-3.17754310. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.1|protein_coding|1/7|c.-49+596C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.2|protein_coding|1/6|c.-57+596C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1807 3 17756804 SNP-3.17755585. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.1|protein_coding|2/8|c.143C>A|p.Val48Asp|307/2919|143/2220|48/739||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.2|protein_coding|2/7|c.143C>A|p.Val48Asp|316/3609|143/1272|48/423||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1808 3 17759634 SNP-3.17758415. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.1|protein_coding|4/7|c.1648-104C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.2|protein_coding|3/6|c.*1096-104C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.3|protein_coding|3/6|c.106-104C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1809 3 17759705 SNP-3.17758486. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.1|protein_coding|4/7|c.1648-33C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.2|protein_coding|3/6|c.*1096-33C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.3|protein_coding|3/6|c.106-33C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1810 3 17760048 SNP-3.17758829. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.1|protein_coding|6/8|c.1863A>G|p.Pro621Pro|2027/2919|1863/2220|621/739||,G|synonymous_variant|LOW|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.3|protein_coding|5/7|c.321A>G|p.Pro107Pro|696/1588|321/678|107/225||,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.2|protein_coding|5/7|c.*1311A>G|||||2115| GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1811 3 17761017 SNP-3.17759798. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.1|protein_coding|8/8|c.*419C>A|||||419|,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.2|protein_coding|7/7|c.*2087C>A|||||3084|,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g31180|LOC_Os03g31180|transcript|LOC_Os03g31180.3|protein_coding|7/7|c.*419C>A|||||419| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1812 3 17769310 SNP-3.17768091. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31200-LOC_Os03g31210|LOC_Os03g31200-LOC_Os03g31210|intergenic_region|LOC_Os03g31200-LOC_Os03g31210|||n.17769310C>A|||||| GT 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1813 3 17772479 SNP-3.17771260. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31200-LOC_Os03g31210|LOC_Os03g31200-LOC_Os03g31210|intergenic_region|LOC_Os03g31200-LOC_Os03g31210|||n.17772479C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/1 0/1 0/1 1/1 ./. 0/0 0/1 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1814 3 17772942 SNP-3.17771723. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31200-LOC_Os03g31210|LOC_Os03g31200-LOC_Os03g31210|intergenic_region|LOC_Os03g31200-LOC_Os03g31210|||n.17772942A>G|||||| GT 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1815 3 17776061 SNP-3.17774842. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31210|LOC_Os03g31210|transcript|LOC_Os03g31210.1|protein_coding|2/2|c.1290C>A|p.Thr430Thr|1290/1629|1290/1473|430/490||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1816 3 17776178 SNP-3.17774959. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31210|LOC_Os03g31210|transcript|LOC_Os03g31210.1|protein_coding|2/2|c.1407C>A|p.Gly469Gly|1407/1629|1407/1473|469/490||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1817 3 17777038 SNP-3.17775819. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31210-LOC_Os03g31230|LOC_Os03g31210-LOC_Os03g31230|intergenic_region|LOC_Os03g31210-LOC_Os03g31230|||n.17777038C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1818 3 17777759 SNP-3.17776540. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31210-LOC_Os03g31230|LOC_Os03g31210-LOC_Os03g31230|intergenic_region|LOC_Os03g31210-LOC_Os03g31230|||n.17777759A>G|||||| GT 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1819 3 17781236 SNP-3.17780017. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31230|LOC_Os03g31230|transcript|LOC_Os03g31230.1|protein_coding|1/3|c.-6-416A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g31230|LOC_Os03g31230|transcript|LOC_Os03g31230.2|protein_coding|1/3|c.-6-416A>G|||||| GT 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1820 3 17787709 SNP-3.17786490. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31240|LOC_Os03g31240|transcript|LOC_Os03g31240.1|protein_coding|1/1|c.1202T>C|p.Ala401Ala|1414/1792|1202/1254|401/417||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1821 3 17788017 SNP-3.17786798. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31240|LOC_Os03g31240|transcript|LOC_Os03g31240.1|protein_coding|1/1|c.894T>C|p.Arg298Arg|1106/1792|894/1254|298/417||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/1 ./. 1/1 0/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1822 3 17789783 SNP-3.17788564. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17789783A>G|||||| GT ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1823 3 17790869 SNP-3.17789650. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17790869C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1824 3 17792735 SNP-3.17791516. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17792735C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1825 3 17794718 SNP-3.17793499. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17794718C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1826 3 17795243 SNP-3.17794024. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17795243A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1827 3 17795350 SNP-3.17794131. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17795350C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1828 3 17796195 SNP-3.17794976. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17796195C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1829 3 17797088 SNP-3.17795869. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17797088C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1830 3 17798652 SNP-3.17797433. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17798652C>A|||||| GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1831 3 17799588 SNP-3.17798369. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31240-LOC_Os03g31254|LOC_Os03g31240-LOC_Os03g31254|intergenic_region|LOC_Os03g31240-LOC_Os03g31254|||n.17799588A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1832 3 17802464 SNP-3.17801245. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31254|LOC_Os03g31254|transcript|LOC_Os03g31254.1|protein_coding|1/1|c.272T>C|p.Ser91Ser|272/303|272/303|91/100||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1833 3 17802533 SNP-3.17801314. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31254|LOC_Os03g31254|transcript|LOC_Os03g31254.1|protein_coding|1/1|c.203G>T|p.Arg68Leu|203/303|203/303|68/100|| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1834 3 17803332 SNP-3.17802113. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31254-LOC_Os03g31260|LOC_Os03g31254-LOC_Os03g31260|intergenic_region|LOC_Os03g31254-LOC_Os03g31260|||n.17803332C>A|||||| GT ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1835 3 17805262 SNP-3.17804043. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31260|LOC_Os03g31260|transcript|LOC_Os03g31260.1|protein_coding|2/2|c.318+40G>T|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1836 3 17806401 SNP-3.17805182. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31260-LOC_Os03g31270|LOC_Os03g31260-LOC_Os03g31270|intergenic_region|LOC_Os03g31260-LOC_Os03g31270|||n.17806401C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. ./. ./. 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1837 3 17806488 SNP-3.17805269. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31260-LOC_Os03g31270|LOC_Os03g31260-LOC_Os03g31270|intergenic_region|LOC_Os03g31260-LOC_Os03g31270|||n.17806488A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1838 3 17806804 SNP-3.17805585. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31260-LOC_Os03g31270|LOC_Os03g31260-LOC_Os03g31270|intergenic_region|LOC_Os03g31260-LOC_Os03g31270|||n.17806804C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1839 3 17810344 SNP-3.17809125. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31260-LOC_Os03g31270|LOC_Os03g31260-LOC_Os03g31270|intergenic_region|LOC_Os03g31260-LOC_Os03g31270|||n.17810344A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1840 3 17811027 SNP-3.17809808. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31260-LOC_Os03g31270|LOC_Os03g31260-LOC_Os03g31270|intergenic_region|LOC_Os03g31260-LOC_Os03g31270|||n.17811027C>A|||||| GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1841 3 17811450 SNP-3.17810231. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31260-LOC_Os03g31270|LOC_Os03g31260-LOC_Os03g31270|intergenic_region|LOC_Os03g31260-LOC_Os03g31270|||n.17811450A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1842 3 17811831 SNP-3.17810612. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31270|LOC_Os03g31270|transcript|LOC_Os03g31270.1|protein_coding|3/3|c.215T>C|p.Pro72Pro|215/453|215/453|72/150||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1843 3 17812437 SNP-3.17811218. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31270|LOC_Os03g31270|transcript|LOC_Os03g31270.1|protein_coding|1/2|c.38-222G>T|||||| GT 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1844 3 17812885 SNP-3.17811666. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31270|LOC_Os03g31270|transcript|LOC_Os03g31270.1|protein_coding|1/2|c.37+287G>T|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1845 3 17814827 SNP-3.17813608. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31270-LOC_Os03g31280|LOC_Os03g31270-LOC_Os03g31280|intergenic_region|LOC_Os03g31270-LOC_Os03g31280|||n.17814827C>A|||||| GT 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1846 3 17815796 SNP-3.17814577. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31270-LOC_Os03g31280|LOC_Os03g31270-LOC_Os03g31280|intergenic_region|LOC_Os03g31270-LOC_Os03g31280|||n.17815796C>A|||||| GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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1847 3 17815870 SNP-3.17814651. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31270-LOC_Os03g31280|LOC_Os03g31270-LOC_Os03g31280|intergenic_region|LOC_Os03g31270-LOC_Os03g31280|||n.17815870A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1848 3 17816430 SNP-3.17815211. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31270-LOC_Os03g31280|LOC_Os03g31270-LOC_Os03g31280|intergenic_region|LOC_Os03g31270-LOC_Os03g31280|||n.17816430A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1849 3 17817749 SNP-3.17816530. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31270-LOC_Os03g31280|LOC_Os03g31270-LOC_Os03g31280|intergenic_region|LOC_Os03g31270-LOC_Os03g31280|||n.17817749C>A|||||| GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1850 3 17818220 SNP-3.17817001. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31270-LOC_Os03g31280|LOC_Os03g31270-LOC_Os03g31280|intergenic_region|LOC_Os03g31270-LOC_Os03g31280|||n.17818220C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1851 3 17818324 SNP-3.17817105. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g31280|LOC_Os03g31280|transcript|LOC_Os03g31280.1|protein_coding|2/2|c.574G>T|p.Glu192*|574/591|574/591|192/196|| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1852 3 17822048 SNP-3.17820829. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31280-LOC_Os03g31290|LOC_Os03g31280-LOC_Os03g31290|intergenic_region|LOC_Os03g31280-LOC_Os03g31290|||n.17822048C>A|||||| GT 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1853 3 17823232 SNP-3.17822013. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31280-LOC_Os03g31290|LOC_Os03g31280-LOC_Os03g31290|intergenic_region|LOC_Os03g31280-LOC_Os03g31290|||n.17823232A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1854 3 17823757 SNP-3.17822538. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31280-LOC_Os03g31290|LOC_Os03g31280-LOC_Os03g31290|intergenic_region|LOC_Os03g31280-LOC_Os03g31290|||n.17823757C>A|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1855 3 17824014 SNP-3.17822795. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31280-LOC_Os03g31290|LOC_Os03g31280-LOC_Os03g31290|intergenic_region|LOC_Os03g31280-LOC_Os03g31290|||n.17824014C>A|||||| GT 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 0/1 0/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/1 ./. ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1856 3 17825278 SNP-3.17824059. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31290|LOC_Os03g31290|transcript|LOC_Os03g31290.1|protein_coding|2/3|c.136+619C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31290|LOC_Os03g31290|transcript|LOC_Os03g31290.2|protein_coding|2/3|c.136+619C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1857 3 17828059 SNP-3.17826840. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31290-LOC_Os03g31300|LOC_Os03g31290-LOC_Os03g31300|intergenic_region|LOC_Os03g31290-LOC_Os03g31300|||n.17828059A>G|||||| GT ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1858 3 17828261 SNP-3.17827042. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31290-LOC_Os03g31300|LOC_Os03g31290-LOC_Os03g31300|intergenic_region|LOC_Os03g31290-LOC_Os03g31300|||n.17828261C>A|||||| GT ./. 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 ./. 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1859 3 17831799 SNP-3.17830580. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31290-LOC_Os03g31300|LOC_Os03g31290-LOC_Os03g31300|intergenic_region|LOC_Os03g31290-LOC_Os03g31300|||n.17831799C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1860 3 17831851 SNP-3.17830632. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31290-LOC_Os03g31300|LOC_Os03g31290-LOC_Os03g31300|intergenic_region|LOC_Os03g31290-LOC_Os03g31300|||n.17831851C>A|||||| GT 0/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 ./. ./. ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1861 3 17834227 SNP-3.17833008. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31300|LOC_Os03g31300|transcript|LOC_Os03g31300.1|protein_coding|4/10|c.706+576C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1862 3 17835071 SNP-3.17833852. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31300|LOC_Os03g31300|transcript|LOC_Os03g31300.1|protein_coding|5/10|c.903-25C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1863 3 17836160 SNP-3.17834941. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31300|LOC_Os03g31300|transcript|LOC_Os03g31300.1|protein_coding|7/10|c.1108+307C>A|||||| GT 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1864 3 17842285 SNP-3.17841066. C A . . PR;ANN=A|splice_region_variant&intron_variant|LOW|LOC_Os03g31310|LOC_Os03g31310|transcript|LOC_Os03g31310.5|protein_coding|3/3|c.*130+5G>T||||||,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g31310|LOC_Os03g31310|transcript|LOC_Os03g31310.3|protein_coding|3/3|c.*135G>T|||||651|,A|intron_variant|MODIFIER|LOC_Os03g31310|LOC_Os03g31310|transcript|LOC_Os03g31310.1|protein_coding|2/2|c.*19+632G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g31310|LOC_Os03g31310|transcript|LOC_Os03g31310.2|protein_coding|2/2|c.*19+632G>T|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1865 3 17843926 SNP-3.17842707. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31310|LOC_Os03g31310|transcript|LOC_Os03g31310.1|protein_coding|1/2|c.-74+159T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g31310|LOC_Os03g31310|transcript|LOC_Os03g31310.2|protein_coding|1/2|c.-59+159T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g31310|LOC_Os03g31310|transcript|LOC_Os03g31310.5|protein_coding|1/3|c.-74+159T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g31310|LOC_Os03g31310|transcript|LOC_Os03g31310.3|protein_coding|1/2|c.-74+159T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g31310|LOC_Os03g31310|transcript|LOC_Os03g31310.4|protein_coding|1/1|c.-74+159T>C|||||| GT ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/1 ./. 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1866 3 17845162 SNP-3.17843943. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31310-LOC_Os03g31320|LOC_Os03g31310-LOC_Os03g31320|intergenic_region|LOC_Os03g31310-LOC_Os03g31320|||n.17845162A>G|||||| GT ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1867 3 17845517 SNP-3.17844298. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31310-LOC_Os03g31320|LOC_Os03g31310-LOC_Os03g31320|intergenic_region|LOC_Os03g31310-LOC_Os03g31320|||n.17845517A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 1/1 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1868 3 17846359 SNP-3.17845140. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31310-LOC_Os03g31320|LOC_Os03g31310-LOC_Os03g31320|intergenic_region|LOC_Os03g31310-LOC_Os03g31320|||n.17846359A>G|||||| GT ./. 1/1 0/1 ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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changeset
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1869 3 17846743 SNP-3.17845524. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31310-LOC_Os03g31320|LOC_Os03g31310-LOC_Os03g31320|intergenic_region|LOC_Os03g31310-LOC_Os03g31320|||n.17846743C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1870 3 17846903 SNP-3.17845684. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31310-LOC_Os03g31320|LOC_Os03g31310-LOC_Os03g31320|intergenic_region|LOC_Os03g31310-LOC_Os03g31320|||n.17846903A>G|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1871 3 17847862 SNP-3.17846643. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31310-LOC_Os03g31320|LOC_Os03g31310-LOC_Os03g31320|intergenic_region|LOC_Os03g31310-LOC_Os03g31320|||n.17847862A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1872 3 17848071 SNP-3.17846852. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31310-LOC_Os03g31320|LOC_Os03g31310-LOC_Os03g31320|intergenic_region|LOC_Os03g31310-LOC_Os03g31320|||n.17848071A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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1873 3 17850031 SNP-3.17848812. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31310-LOC_Os03g31320|LOC_Os03g31310-LOC_Os03g31320|intergenic_region|LOC_Os03g31310-LOC_Os03g31320|||n.17850031A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1874 3 17850248 SNP-3.17849029. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31310-LOC_Os03g31320|LOC_Os03g31310-LOC_Os03g31320|intergenic_region|LOC_Os03g31310-LOC_Os03g31320|||n.17850248C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1875 3 17851173 SNP-3.17849954. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31320|LOC_Os03g31320|transcript|LOC_Os03g31320.1|protein_coding|3/3|c.590G>T|p.Leu197Leu|913/1597|590/804|197/267||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g31320|LOC_Os03g31320|transcript|LOC_Os03g31320.2|protein_coding|2/2|c.590G>T|p.Leu197Leu|834/1518|590/804|197/267||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1876 3 17854397 SNP-3.17853178. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31320-LOC_Os03g31340|LOC_Os03g31320-LOC_Os03g31340|intergenic_region|LOC_Os03g31320-LOC_Os03g31340|||n.17854397A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1877 3 17854705 SNP-3.17853486. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31320-LOC_Os03g31340|LOC_Os03g31320-LOC_Os03g31340|intergenic_region|LOC_Os03g31320-LOC_Os03g31340|||n.17854705A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1878 3 17856249 SNP-3.17855030. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31320-LOC_Os03g31340|LOC_Os03g31320-LOC_Os03g31340|intergenic_region|LOC_Os03g31320-LOC_Os03g31340|||n.17856249A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1879 3 17858169 SNP-3.17856950. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31320-LOC_Os03g31340|LOC_Os03g31320-LOC_Os03g31340|intergenic_region|LOC_Os03g31320-LOC_Os03g31340|||n.17858169C>A|||||| GT 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1880 3 17858214 SNP-3.17856995. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31320-LOC_Os03g31340|LOC_Os03g31320-LOC_Os03g31340|intergenic_region|LOC_Os03g31320-LOC_Os03g31340|||n.17858214A>G|||||| GT 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1881 3 17858548 SNP-3.17857329. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31320-LOC_Os03g31340|LOC_Os03g31320-LOC_Os03g31340|intergenic_region|LOC_Os03g31320-LOC_Os03g31340|||n.17858548C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1882 3 17859237 SNP-3.17858018. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31340|LOC_Os03g31340|transcript|LOC_Os03g31340.1|protein_coding|2/2|c.163T>C|p.Ala55Pro|163/216|163/216|55/71||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1883 3 17859404 SNP-3.17858185. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31340|LOC_Os03g31340|transcript|LOC_Os03g31340.1|protein_coding|1/2|c.78G>T|p.His26His|78/216|78/216|26/71||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1884 3 17859425 SNP-3.17858206. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31340|LOC_Os03g31340|transcript|LOC_Os03g31340.1|protein_coding|1/2|c.57G>T|p.Ile19Ile|57/216|57/216|19/71||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1885 3 17861061 SNP-3.17859842. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31340-LOC_Os03g31360|LOC_Os03g31340-LOC_Os03g31360|intergenic_region|LOC_Os03g31340-LOC_Os03g31360|||n.17861061C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1886 3 17861116 SNP-3.17859897. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31340-LOC_Os03g31360|LOC_Os03g31340-LOC_Os03g31360|intergenic_region|LOC_Os03g31340-LOC_Os03g31360|||n.17861116A>G|||||| GT 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1887 3 17861866 SNP-3.17860647. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31340-LOC_Os03g31360|LOC_Os03g31340-LOC_Os03g31360|intergenic_region|LOC_Os03g31340-LOC_Os03g31360|||n.17861866A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1888 3 17863220 SNP-3.17862001. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31340-LOC_Os03g31360|LOC_Os03g31340-LOC_Os03g31360|intergenic_region|LOC_Os03g31340-LOC_Os03g31360|||n.17863220C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1889 3 17864056 SNP-3.17862837. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31340-LOC_Os03g31360|LOC_Os03g31340-LOC_Os03g31360|intergenic_region|LOC_Os03g31340-LOC_Os03g31360|||n.17864056C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1890 3 17865173 SNP-3.17863954. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31360|LOC_Os03g31360|transcript|LOC_Os03g31360.1|protein_coding|3/4|c.672A>G|p.Ser224Ser|705/1708|672/1491|224/496||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1891 3 17865357 SNP-3.17864138. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31360|LOC_Os03g31360|transcript|LOC_Os03g31360.1|protein_coding|3/4|c.856C>A|p.Ser286Thr|889/1708|856/1491|286/496||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1892 3 17872703 SNP-3.17871484. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31370|LOC_Os03g31370|transcript|LOC_Os03g31370.1|protein_coding|1/2|c.521C>A|p.Asp174Asp|521/615|521/615|174/204||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1893 3 17874141 SNP-3.17872922. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17874141A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1894 3 17877248 SNP-3.17876029. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17877248C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1895 3 17878064 SNP-3.17876845. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17878064C>A|||||| GT ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1896 3 17878462 SNP-3.17877243. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17878462A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1897 3 17878731 SNP-3.17877512. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17878731C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1898 3 17879535 SNP-3.17878316. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17879535C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1899 3 17879666 SNP-3.17878447. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17879666A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1900 3 17879911 SNP-3.17878692. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17879911C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1901 3 17879955 SNP-3.17878736. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17879955A>G|||||| GT 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/1 0/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1902 3 17880337 SNP-3.17879118. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17880337C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1903 3 17881301 SNP-3.17880082. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17881301C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1904 3 17881763 SNP-3.17880544. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17881763A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1905 3 17882403 SNP-3.17881184. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17882403C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1906 3 17882842 SNP-3.17881623. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31370-LOC_Os03g31390|LOC_Os03g31370-LOC_Os03g31390|intergenic_region|LOC_Os03g31370-LOC_Os03g31390|||n.17882842C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1907 3 17891933 SNP-3.17890714. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g31400|LOC_Os03g31400|transcript|LOC_Os03g31400.1|protein_coding|16/16|c.*205C>A|||||205|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1908 3 17896140 SNP-3.17894921. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31410-LOC_Os03g31430|LOC_Os03g31410-LOC_Os03g31430|intergenic_region|LOC_Os03g31410-LOC_Os03g31430|||n.17896140C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 0/0 ./. 1/1 0/1 0/0 0/1 0/0 0/1 ./. 1/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1909 3 17896605 SNP-3.17895386. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31410-LOC_Os03g31430|LOC_Os03g31410-LOC_Os03g31430|intergenic_region|LOC_Os03g31410-LOC_Os03g31430|||n.17896605A>G|||||| GT 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/1 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1910 3 17899309 SNP-3.17898090. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31410-LOC_Os03g31430|LOC_Os03g31410-LOC_Os03g31430|intergenic_region|LOC_Os03g31410-LOC_Os03g31430|||n.17899309C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1911 3 17900103 SNP-3.17898884. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31430|LOC_Os03g31430|transcript|LOC_Os03g31430.1|protein_coding|8/8|c.1476-382T>C|||||| GT 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1912 3 17900223 SNP-3.17899004. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31430|LOC_Os03g31430|transcript|LOC_Os03g31430.1|protein_coding|8/8|c.1476-502T>C|||||| GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1913 3 17900413 SNP-3.17899194. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31430|LOC_Os03g31430|transcript|LOC_Os03g31430.1|protein_coding|8/8|c.1476-692G>T|||||| GT 0/1 1/1 ./. 1/1 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 1/1 0/1 0/1 0/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1914 3 17902941 SNP-3.17901722. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31430|LOC_Os03g31430|transcript|LOC_Os03g31430.1|protein_coding|6/8|c.1327-38G>T|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1915 3 17905010 SNP-3.17903791. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31430|LOC_Os03g31430|transcript|LOC_Os03g31430.1|protein_coding|1/8|c.170-67G>T|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1916 3 17905238 SNP-3.17904019. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31430|LOC_Os03g31430|transcript|LOC_Os03g31430.1|protein_coding|1/8|c.170-295G>T|||||| GT ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1917 3 17906462 SNP-3.17905243. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17906462C>A|||||| GT 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1918 3 17906573 SNP-3.17905354. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17906573C>A|||||| GT ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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1919 3 17907372 SNP-3.17906153. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17907372A>G|||||| GT 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. |
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1920 3 17908145 SNP-3.17906926. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17908145C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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1921 3 17909039 SNP-3.17907820. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17909039C>A|||||| GT ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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1922 3 17909506 SNP-3.17908287. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17909506C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/0 |
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1923 3 17909598 SNP-3.17908379. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17909598A>G|||||| GT 1/1 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 |
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1924 3 17909991 SNP-3.17908772. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17909991C>A|||||| GT 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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1925 3 17910209 SNP-3.17908990. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17910209C>A|||||| GT 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/1 0/1 0/0 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/1 ./. 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/1 0/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 |
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1926 3 17910760 SNP-3.17909541. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17910760A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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1927 3 17911107 SNP-3.17909888. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17911107C>A|||||| GT 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1928 3 17912986 SNP-3.17911767. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17912986A>G|||||| GT 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/1 1/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/1 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1929 3 17914329 SNP-3.17913110. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31430-LOC_Os03g31440|LOC_Os03g31430-LOC_Os03g31440|intergenic_region|LOC_Os03g31430-LOC_Os03g31440|||n.17914329C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1930 3 17914983 SNP-3.17913764. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31440|LOC_Os03g31440|transcript|LOC_Os03g31440.1|protein_coding|2/2|c.462T>C|p.Gly154Gly|462/540|462/540|154/179||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/1 0/0 ./. 1/1 ./. 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/1 0/0 0/1 ./. ./. 0/0 ./. 0/1 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 0/0 1/1 0/1 0/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1931 3 17918451 SNP-3.17917232. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31440-LOC_Os03g31446|LOC_Os03g31440-LOC_Os03g31446|intergenic_region|LOC_Os03g31440-LOC_Os03g31446|||n.17918451A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1932 3 17920626 SNP-3.17919407. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31440-LOC_Os03g31446|LOC_Os03g31440-LOC_Os03g31446|intergenic_region|LOC_Os03g31440-LOC_Os03g31446|||n.17920626C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1933 3 17925657 SNP-3.17924438. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31446|LOC_Os03g31446|transcript|LOC_Os03g31446.1|protein_coding|1/4|c.44-413G>T|||||| GT ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1934 3 17926056 SNP-3.17924837. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31446|LOC_Os03g31446|transcript|LOC_Os03g31446.1|protein_coding|1/4|c.43+237G>T|||||| GT ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1935 3 17933050 SNP-3.17931831. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31460-LOC_Os03g31480|LOC_Os03g31460-LOC_Os03g31480|intergenic_region|LOC_Os03g31460-LOC_Os03g31480|||n.17933050C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1936 3 17934255 SNP-3.17933036. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31460-LOC_Os03g31480|LOC_Os03g31460-LOC_Os03g31480|intergenic_region|LOC_Os03g31460-LOC_Os03g31480|||n.17934255C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1937 3 17936247 SNP-3.17935028ag. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31480-LOC_Os03g31490|LOC_Os03g31480-LOC_Os03g31490|intergenic_region|LOC_Os03g31480-LOC_Os03g31490|||n.17936247C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 0/0 ./. 0/0 1/1 0/1 ./. ./. 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1938 3 17936587 SNP-3.17935368. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31480-LOC_Os03g31490|LOC_Os03g31480-LOC_Os03g31490|intergenic_region|LOC_Os03g31480-LOC_Os03g31490|||n.17936587C>A|||||| GT 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. ./. 0/1 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1939 3 17936998 SNP-3.17935779. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31480-LOC_Os03g31490|LOC_Os03g31480-LOC_Os03g31490|intergenic_region|LOC_Os03g31480-LOC_Os03g31490|||n.17936998C>A|||||| GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1940 3 17937439 SNP-3.17936220. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31480-LOC_Os03g31490|LOC_Os03g31480-LOC_Os03g31490|intergenic_region|LOC_Os03g31480-LOC_Os03g31490|||n.17937439A>G|||||| GT 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1941 3 17937570 SNP-3.17936351. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31480-LOC_Os03g31490|LOC_Os03g31480-LOC_Os03g31490|intergenic_region|LOC_Os03g31480-LOC_Os03g31490|||n.17937570C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1942 3 17937691 SNP-3.17936472. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31480-LOC_Os03g31490|LOC_Os03g31480-LOC_Os03g31490|intergenic_region|LOC_Os03g31480-LOC_Os03g31490|||n.17937691C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/1 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/1 ./. ./. 0/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1943 3 17938830 SNP-3.17937611. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31480-LOC_Os03g31490|LOC_Os03g31480-LOC_Os03g31490|intergenic_region|LOC_Os03g31480-LOC_Os03g31490|||n.17938830C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1944 3 17939626 SNP-3.17938407. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g31490|LOC_Os03g31490|transcript|LOC_Os03g31490.1|protein_coding|1/4|c.-55A>G|||||55|WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1945 3 17940982 SNP-3.17939763. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31490|LOC_Os03g31490|transcript|LOC_Os03g31490.1|protein_coding|2/3|c.570+502A>G|||||| GT 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1946 3 17944076 SNP-3.17942857. C A . . PR;ANN=A|start_lost|HIGH|LOC_Os03g31500|LOC_Os03g31500|transcript|LOC_Os03g31500.1|protein_coding|1/1|c.1G>T|p.Met1?|1/300|1/300|1/99||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g31500|LOC_Os03g31500|1|1.00) GT 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 0/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1947 3 17944679 SNP-3.17943460. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31500-LOC_Os03g31510|LOC_Os03g31500-LOC_Os03g31510|intergenic_region|LOC_Os03g31500-LOC_Os03g31510|||n.17944679C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1948 3 17945505 SNP-3.17944286. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31500-LOC_Os03g31510|LOC_Os03g31500-LOC_Os03g31510|intergenic_region|LOC_Os03g31500-LOC_Os03g31510|||n.17945505A>G|||||| GT ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 1/1 0/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1949 3 17947981 SNP-3.17946762. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31500-LOC_Os03g31510|LOC_Os03g31500-LOC_Os03g31510|intergenic_region|LOC_Os03g31500-LOC_Os03g31510|||n.17947981C>A|||||| GT ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1950 3 17948270 SNP-3.17947051. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31500-LOC_Os03g31510|LOC_Os03g31500-LOC_Os03g31510|intergenic_region|LOC_Os03g31500-LOC_Os03g31510|||n.17948270C>A|||||| GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1951 3 17948702 SNP-3.17947483. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31500-LOC_Os03g31510|LOC_Os03g31500-LOC_Os03g31510|intergenic_region|LOC_Os03g31500-LOC_Os03g31510|||n.17948702C>A|||||| GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1952 3 17952951 SNP-3.17951732. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31510-LOC_Os03g31520|LOC_Os03g31510-LOC_Os03g31520|intergenic_region|LOC_Os03g31510-LOC_Os03g31520|||n.17952951A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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1953 3 17953359 SNP-3.17952140. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31510-LOC_Os03g31520|LOC_Os03g31510-LOC_Os03g31520|intergenic_region|LOC_Os03g31510-LOC_Os03g31520|||n.17953359A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1954 3 17954034 SNP-3.17952815. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31510-LOC_Os03g31520|LOC_Os03g31510-LOC_Os03g31520|intergenic_region|LOC_Os03g31510-LOC_Os03g31520|||n.17954034A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1955 3 17956417 SNP-3.17955198. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31520|LOC_Os03g31520|transcript|LOC_Os03g31520.1|protein_coding|3/4|c.1392G>T|p.Val464Val|1392/1536|1392/1536|464/511||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1956 3 17958188 SNP-3.17956969. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31520-LOC_Os03g31530|LOC_Os03g31520-LOC_Os03g31530|intergenic_region|LOC_Os03g31520-LOC_Os03g31530|||n.17958188C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1957 3 17963359 SNP-3.17962140. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31530|LOC_Os03g31530|transcript|LOC_Os03g31530.1|protein_coding|1/4|c.441G>T|p.Asn147Asn|441/3534|441/3534|147/1177||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1958 3 17964765 SNP-3.17963546. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31530-LOC_Os03g31540|LOC_Os03g31530-LOC_Os03g31540|intergenic_region|LOC_Os03g31530-LOC_Os03g31540|||n.17964765A>G|||||| GT 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 ./. 0/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1959 3 17966864 SNP-3.17965645. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31530-LOC_Os03g31540|LOC_Os03g31530-LOC_Os03g31540|intergenic_region|LOC_Os03g31530-LOC_Os03g31540|||n.17966864A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1960 3 17966914 SNP-3.17965695. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31530-LOC_Os03g31540|LOC_Os03g31530-LOC_Os03g31540|intergenic_region|LOC_Os03g31530-LOC_Os03g31540|||n.17966914C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1961 3 17967272 SNP-3.17966053. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31530-LOC_Os03g31540|LOC_Os03g31530-LOC_Os03g31540|intergenic_region|LOC_Os03g31530-LOC_Os03g31540|||n.17967272A>G|||||| GT 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1962 3 17970951 SNP-3.17969732. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31540-LOC_Os03g31542|LOC_Os03g31540-LOC_Os03g31542|intergenic_region|LOC_Os03g31540-LOC_Os03g31542|||n.17970951A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1963 3 17971628 SNP-3.17970409. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31540-LOC_Os03g31542|LOC_Os03g31540-LOC_Os03g31542|intergenic_region|LOC_Os03g31540-LOC_Os03g31542|||n.17971628A>G|||||| GT ./. 0/0 0/1 0/0 0/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 0/1 1/1 1/1 0/0 ./. 0/1 0/1 0/1 ./. 0/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 ./. ./. 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1964 3 17972515 SNP-3.17971296. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31542|LOC_Os03g31542|transcript|LOC_Os03g31542.1|protein_coding|1/4|c.672C>A|p.Asn224Lys|672/1674|672/1674|224/557||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/1 0/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1965 3 17972810 SNP-3.17971591. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31542|LOC_Os03g31542|transcript|LOC_Os03g31542.1|protein_coding|2/4|c.838C>A|p.Leu280Met|838/1674|838/1674|280/557|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1966 3 17973107 SNP-3.17971888. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31542|LOC_Os03g31542|transcript|LOC_Os03g31542.1|protein_coding|2/4|c.1135C>A|p.Ile379Ile|1135/1674|1135/1674|379/557||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1967 3 17976158 SNP-3.17974939. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31542-LOC_Os03g31544|LOC_Os03g31542-LOC_Os03g31544|intergenic_region|LOC_Os03g31542-LOC_Os03g31544|||n.17976158A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1968 3 17976415 SNP-3.17975196. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31542-LOC_Os03g31544|LOC_Os03g31542-LOC_Os03g31544|intergenic_region|LOC_Os03g31542-LOC_Os03g31544|||n.17976415C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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1969 3 17977120 SNP-3.17975901. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31544|LOC_Os03g31544|transcript|LOC_Os03g31544.1|protein_coding|1/1|c.266A>G|p.Arg89Arg|266/324|266/324|89/107||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1970 3 17980378 SNP-3.17979159. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31544-LOC_Os03g31546|LOC_Os03g31544-LOC_Os03g31546|intergenic_region|LOC_Os03g31544-LOC_Os03g31546|||n.17980378A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1971 3 17982733 SNP-3.17981514. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31544-LOC_Os03g31546|LOC_Os03g31544-LOC_Os03g31546|intergenic_region|LOC_Os03g31544-LOC_Os03g31546|||n.17982733C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1972 3 17982916 SNP-3.17981697. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31544-LOC_Os03g31546|LOC_Os03g31544-LOC_Os03g31546|intergenic_region|LOC_Os03g31544-LOC_Os03g31546|||n.17982916A>G|||||| GT 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1973 3 17982990 SNP-3.17981771. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31544-LOC_Os03g31546|LOC_Os03g31544-LOC_Os03g31546|intergenic_region|LOC_Os03g31544-LOC_Os03g31546|||n.17982990C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/1 1/1 0/1 1/1 ./. 0/1 0/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1974 3 17983222 SNP-3.17982003. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31546|LOC_Os03g31546|transcript|LOC_Os03g31546.1|protein_coding|1/1|c.65C>A|p.Leu22His|65/672|65/672|22/223||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1975 3 17983505 SNP-3.17982286. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31546|LOC_Os03g31546|transcript|LOC_Os03g31546.1|protein_coding|1/1|c.348A>G|p.Asp116Glu|348/672|348/672|116/223||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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1976 3 17984594 SNP-3.17983375. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31546-LOC_Os03g31550|LOC_Os03g31546-LOC_Os03g31550|intergenic_region|LOC_Os03g31546-LOC_Os03g31550|||n.17984594C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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1977 3 17984801 SNP-3.17983582. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31546-LOC_Os03g31550|LOC_Os03g31546-LOC_Os03g31550|intergenic_region|LOC_Os03g31546-LOC_Os03g31550|||n.17984801C>A|||||| GT 0/0 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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1978 3 17985314 SNP-3.17984095. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31546-LOC_Os03g31550|LOC_Os03g31546-LOC_Os03g31550|intergenic_region|LOC_Os03g31546-LOC_Os03g31550|||n.17985314A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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1979 3 17987234 SNP-3.17986015. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.1|protein_coding|2/13|c.242+118A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.2|protein_coding|2/13|c.-87+118A>G|||||| GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1980 3 17992019 SNP-3.17990800. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.1|protein_coding|6/13|c.2413-588A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.2|protein_coding|6/13|c.2122-588A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1981 3 17992271 SNP-3.17991052. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.1|protein_coding|6/13|c.2413-336A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.2|protein_coding|6/13|c.2122-336A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1982 3 17993746 SNP-3.17992527. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.1|protein_coding|9/14|c.3141A>G|p.Thr1047Thr|3326/4651|3141/4110|1047/1369||WARNING_REF_DOES_NOT_MATCH_GENOME,G|synonymous_variant|LOW|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.2|protein_coding|9/14|c.2850A>G|p.Thr950Thr|3363/4688|2850/3819|950/1272||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1983 3 17994360 SNP-3.17993141. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.1|protein_coding|10/14|c.3207C>A|p.Thr1069Thr|3392/4651|3207/4110|1069/1369||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.2|protein_coding|10/14|c.2916C>A|p.Thr972Thr|3429/4688|2916/3819|972/1272||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1984 3 17998130 SNP-3.17996911. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.1|protein_coding|14/14|c.4098C>A|p.Lys1366Lys|4283/4651|4098/4110|1366/1369||WARNING_REF_DOES_NOT_MATCH_GENOME,A|synonymous_variant|LOW|LOC_Os03g31550|LOC_Os03g31550|transcript|LOC_Os03g31550.2|protein_coding|14/14|c.3807C>A|p.Lys1269Lys|4320/4688|3807/3819|1269/1272||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1985 3 18001028 SNP-3.17999809. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31550-LOC_Os03g31560|LOC_Os03g31550-LOC_Os03g31560|intergenic_region|LOC_Os03g31550-LOC_Os03g31560|||n.18001028C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 0/0 0/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
1986 3 18001240 SNP-3.18000021. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31550-LOC_Os03g31560|LOC_Os03g31550-LOC_Os03g31560|intergenic_region|LOC_Os03g31550-LOC_Os03g31560|||n.18001240C>A|||||| GT 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1987 3 18001843 SNP-3.18000624. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31550-LOC_Os03g31560|LOC_Os03g31550-LOC_Os03g31560|intergenic_region|LOC_Os03g31550-LOC_Os03g31560|||n.18001843C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1988 3 18002512 SNP-3.18001293. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31550-LOC_Os03g31560|LOC_Os03g31550-LOC_Os03g31560|intergenic_region|LOC_Os03g31550-LOC_Os03g31560|||n.18002512C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1989 3 18004541 SNP-3.18003322. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|1/14|c.86A>G|p.Gly29Gly|86/4503|86/4503|29/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1990 3 18005201 SNP-3.18003982. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|1/14|c.746C>A|p.Arg249Gln|746/4503|746/4503|249/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1991 3 18005519 SNP-3.18004300. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|1/14|c.1064A>G|p.Thr355Ser|1064/4503|1064/4503|355/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1992 3 18006612 SNP-3.18005393. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|2/14|c.1928C>A|p.Val643Asp|1928/4503|1928/4503|643/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1993 3 18007453 SNP-3.18006234. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|3/14|c.2414A>G|p.Arg805Arg|2414/4503|2414/4503|805/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1994 3 18007753 SNP-3.18006534. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|3/14|c.2714A>G|p.Ile905Arg|2714/4503|2714/4503|905/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1995 3 18008086 SNP-3.18006867. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|4/14|c.2838C>A|p.Phe946Leu|2838/4503|2838/4503|946/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1996 3 18008186 SNP-3.18006967. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|4/13|c.2927+11C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1997 3 18009334 SNP-3.18008115. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|6/14|c.3347C>A|p.Tyr1116Tyr|3347/4503|3347/4503|1116/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 ./. ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1998 3 18010017 SNP-3.18008798. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|9/13|c.3647+51C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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1999 3 18010363 SNP-3.18009144. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|11/13|c.3827+19C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2000 3 18010609 SNP-3.18009390. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|12/14|c.3910A>G|p.Arg1304Gly|3910/4503|3910/4503|1304/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2001 3 18010730 SNP-3.18009511. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|12/14|c.4031C>A|p.Val1344Asp|4031/4503|4031/4503|1344/1500||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2002 3 18011285 SNP-3.18010066. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31560|LOC_Os03g31560|transcript|LOC_Os03g31560.1|protein_coding|13/13|c.4464+39C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2003 3 18012005 SNP-3.18010786. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31560-LOC_Os03g31570|LOC_Os03g31560-LOC_Os03g31570|intergenic_region|LOC_Os03g31560-LOC_Os03g31570|||n.18012005C>A|||||| GT 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2004 3 18012176 SNP-3.18010957. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31560-LOC_Os03g31570|LOC_Os03g31560-LOC_Os03g31570|intergenic_region|LOC_Os03g31560-LOC_Os03g31570|||n.18012176A>G|||||| GT 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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2005 3 18012537 SNP-3.18011318. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31560-LOC_Os03g31570|LOC_Os03g31560-LOC_Os03g31570|intergenic_region|LOC_Os03g31560-LOC_Os03g31570|||n.18012537A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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2006 3 18013199 SNP-3.18011980. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31560-LOC_Os03g31570|LOC_Os03g31560-LOC_Os03g31570|intergenic_region|LOC_Os03g31560-LOC_Os03g31570|||n.18013199A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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2007 3 18014557 SNP-3.18013338. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31560-LOC_Os03g31570|LOC_Os03g31560-LOC_Os03g31570|intergenic_region|LOC_Os03g31560-LOC_Os03g31570|||n.18014557C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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2008 3 18015174 SNP-3.18013955. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31560-LOC_Os03g31570|LOC_Os03g31560-LOC_Os03g31570|intergenic_region|LOC_Os03g31560-LOC_Os03g31570|||n.18015174A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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2009 3 18017113 SNP-3.18015894. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31570|LOC_Os03g31570|transcript|LOC_Os03g31570.1|protein_coding|4/10|c.573A>G|p.Gly191Gly|726/1912|573/1455|191/484||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2010 3 18018195 SNP-3.18016976. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31570|LOC_Os03g31570|transcript|LOC_Os03g31570.1|protein_coding|4/9|c.625-61A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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2011 3 18018315 SNP-3.18017096. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31570|LOC_Os03g31570|transcript|LOC_Os03g31570.1|protein_coding|5/10|c.684A>G|p.Ser228Ser|837/1912|684/1455|228/484|| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2012 3 18018917 SNP-3.18017698. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31570|LOC_Os03g31570|transcript|LOC_Os03g31570.1|protein_coding|6/9|c.781-27A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2013 3 18019947 SNP-3.18018728. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31570|LOC_Os03g31570|transcript|LOC_Os03g31570.1|protein_coding|9/10|c.1074C>A|p.Thr358Thr|1227/1912|1074/1455|358/484||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2014 3 18020149 SNP-3.18018930. C A . . PR;ANN=A|splice_region_variant&synonymous_variant|LOW|LOC_Os03g31570|LOC_Os03g31570|transcript|LOC_Os03g31570.1|protein_coding|10/10|c.1188C>A|p.Arg396Arg|1341/1912|1188/1455|396/484||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2015 3 18022146 SNP-3.18020927. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31570-LOC_Os03g31594|LOC_Os03g31570-LOC_Os03g31594|intergenic_region|LOC_Os03g31570-LOC_Os03g31594|||n.18022146C>A|||||| GT ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. |
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2016 3 18022434 SNP-3.18021215. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31570-LOC_Os03g31594|LOC_Os03g31570-LOC_Os03g31594|intergenic_region|LOC_Os03g31570-LOC_Os03g31594|||n.18022434A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2017 3 18023297 SNP-3.18022078. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31570-LOC_Os03g31594|LOC_Os03g31570-LOC_Os03g31594|intergenic_region|LOC_Os03g31570-LOC_Os03g31594|||n.18023297A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2018 3 18023858 SNP-3.18022639. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31570-LOC_Os03g31594|LOC_Os03g31570-LOC_Os03g31594|intergenic_region|LOC_Os03g31570-LOC_Os03g31594|||n.18023858A>G|||||| GT 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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2019 3 18024093 SNP-3.18022874. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31570-LOC_Os03g31594|LOC_Os03g31570-LOC_Os03g31594|intergenic_region|LOC_Os03g31570-LOC_Os03g31594|||n.18024093C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
2020 3 18027733 SNP-3.18026514. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.1|protein_coding|1/15|c.280-109C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.2|protein_coding|1/15|c.280-109C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
2021 3 18027874 SNP-3.18026655. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.1|protein_coding|2/16|c.312A>G|p.Lys104Lys|440/3840|312/3171|104/1056||,G|synonymous_variant|LOW|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.2|protein_coding|2/16|c.312A>G|p.Lys104Lys|440/3828|312/3159|104/1052|| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2022 3 18030683 SNP-3.18029464. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.1|protein_coding|2/15|c.456+2665A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.2|protein_coding|2/15|c.456+2665A>G|||||| GT 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2023 3 18035945 SNP-3.18034726. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.1|protein_coding|2/15|c.457-800A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.2|protein_coding|2/15|c.457-800A>G|||||| GT 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2024 3 18037971 SNP-3.18036752. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.1|protein_coding|8/16|c.1082A>G|p.Ala361Gly|1210/3840|1082/3171|361/1056||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.2|protein_coding|8/16|c.1082A>G|p.Ala361Gly|1210/3828|1082/3159|361/1052||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2025 3 18038175 SNP-3.18036956. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.1|protein_coding|8/16|c.1286A>G|p.Leu429Trp|1414/3840|1286/3171|429/1056||WARNING_REF_DOES_NOT_MATCH_GENOME,G|missense_variant|MODERATE|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.2|protein_coding|8/16|c.1286A>G|p.Leu429Trp|1414/3828|1286/3159|429/1052||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2026 3 18040460 SNP-3.18039241. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.1|protein_coding|12/15|c.2749+12C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.2|protein_coding|12/15|c.2749+12C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2027 3 18041701 SNP-3.18040482. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.1|protein_coding|16/16|c.*369C>A|||||369|WARNING_REF_DOES_NOT_MATCH_GENOME,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g31594|LOC_Os03g31594|transcript|LOC_Os03g31594.2|protein_coding|16/16|c.*369C>A|||||369|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2028 3 18041916 SNP-3.18040697. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18041916C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2029 3 18042800 SNP-3.18041581. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18042800C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2030 3 18043099 SNP-3.18041880. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18043099C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2031 3 18043844 SNP-3.18042625. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18043844C>A|||||| GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2032 3 18043944 SNP-3.18042725. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18043944A>G|||||| GT 0/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2033 3 18044408 SNP-3.18043189. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18044408C>A|||||| GT 0/1 1/1 0/1 1/1 0/1 ./. 0/1 ./. 1/1 ./. ./. 0/1 1/1 0/1 0/1 1/1 0/1 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/0 0/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/1 0/1 1/1 0/1 0/1 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2034 3 18044523 SNP-3.18043304. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18044523A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2035 3 18044759 SNP-3.18043540. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18044759A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2036 3 18044873 SNP-3.18043654. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18044873A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2037 3 18045182 SNP-3.18043963. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31594-LOC_Os03g31620|LOC_Os03g31594-LOC_Os03g31620|intergenic_region|LOC_Os03g31594-LOC_Os03g31620|||n.18045182A>G|||||| GT ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2038 3 18046030 SNP-3.18044811. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31620|LOC_Os03g31620|transcript|LOC_Os03g31620.1|protein_coding|1/6|c.14C>A|p.Val5Glu|14/3699|14/3699|5/1232||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2039 3 18046077 SNP-3.18044858. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31620|LOC_Os03g31620|transcript|LOC_Os03g31620.1|protein_coding|1/6|c.61A>G|p.Gly21Gly|61/3699|61/3699|21/1232||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2040 3 18048585 SNP-3.18047366. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31620|LOC_Os03g31620|transcript|LOC_Os03g31620.1|protein_coding|5/6|c.2187A>G|p.Thr729Thr|2187/3699|2187/3699|729/1232|| GT 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
diff
changeset
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2041 3 18053020 SNP-3.18051801. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31630|LOC_Os03g31630|transcript|LOC_Os03g31630.1|protein_coding|1/1|c.11C>A|p.Phe4Tyr|11/2367|11/2367|4/788||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/1 0/1 1/1 0/0 1/1 ./. 0/1 0/1 0/1 ./. 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 1/1 0/1 ./. 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2042 3 18053071 SNP-3.18051852. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31630|LOC_Os03g31630|transcript|LOC_Os03g31630.1|protein_coding|1/1|c.62A>G|p.Leu21Arg|62/2367|62/2367|21/788||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2043 3 18054349 SNP-3.18053130. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31630|LOC_Os03g31630|transcript|LOC_Os03g31630.1|protein_coding|1/1|c.1340A>G|p.Ser447Ser|1340/2367|1340/2367|447/788||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2044 3 18062019 SNP-3.18060800. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31634-LOC_Os03g31640|LOC_Os03g31634-LOC_Os03g31640|intergenic_region|LOC_Os03g31634-LOC_Os03g31640|||n.18062019A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2045 3 18063349 SNP-3.18062130. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31634-LOC_Os03g31640|LOC_Os03g31634-LOC_Os03g31640|intergenic_region|LOC_Os03g31634-LOC_Os03g31640|||n.18063349C>A|||||| GT 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/1 ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/1 ./. 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/1 0/0 ./. ./. ./. 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2046 3 18063776 SNP-3.18062557. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31634-LOC_Os03g31640|LOC_Os03g31634-LOC_Os03g31640|intergenic_region|LOC_Os03g31634-LOC_Os03g31640|||n.18063776A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/1 0/1 ./. 1/1 ./. 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2047 3 18066116 SNP-3.18064897. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31634-LOC_Os03g31640|LOC_Os03g31634-LOC_Os03g31640|intergenic_region|LOC_Os03g31634-LOC_Os03g31640|||n.18066116A>G|||||| GT ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 ./. 0/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2048 3 18068233 SNP-3.18067014. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31640|LOC_Os03g31640|transcript|LOC_Os03g31640.1|protein_coding|2/7|c.826A>G|p.Asp276Asp|826/2103|826/2103|276/700||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 ./. 1/1 ./. ./. ./. ./. 0/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2049 3 18068263 SNP-3.18067044. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31640|LOC_Os03g31640|transcript|LOC_Os03g31640.1|protein_coding|2/7|c.856C>A|p.His286Asn|856/2103|856/2103|286/700|| GT 0/0 1/1 0/1 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/1 0/0 0/1 0/1 0/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 ./. 0/1 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
diff
changeset
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2050 3 18068326 SNP-3.18067107. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31640|LOC_Os03g31640|transcript|LOC_Os03g31640.1|protein_coding|2/7|c.919A>G|p.Gln307Glu|919/2103|919/2103|307/700||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2051 3 18068469 SNP-3.18067250. A G . . PR;ANN=G|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g31640|LOC_Os03g31640|transcript|LOC_Os03g31640.1|protein_coding|2/6|c.981-1A>G||||||;LOF=(LOC_Os03g31640|LOC_Os03g31640|1|1.00) GT 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2052 3 18068608 SNP-3.18067389. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31640|LOC_Os03g31640|transcript|LOC_Os03g31640.1|protein_coding|3/7|c.1119A>G|p.Ser373Arg|1119/2103|1119/2103|373/700||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2053 3 18069083 SNP-3.18067864. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31640|LOC_Os03g31640|transcript|LOC_Os03g31640.1|protein_coding|4/7|c.1445C>A|p.Arg482His|1445/2103|1445/2103|482/700||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 1/1 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2054 3 18069191 SNP-3.18067972. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31640|LOC_Os03g31640|transcript|LOC_Os03g31640.1|protein_coding|5/7|c.1479A>G|p.Ala493Ala|1479/2103|1479/2103|493/700||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2055 3 18069653 SNP-3.18068434. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31640|LOC_Os03g31640|transcript|LOC_Os03g31640.1|protein_coding|6/6|c.1760-48A>G|||||| GT 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2056 3 18070684 SNP-3.18069465. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31650|LOC_Os03g31650|transcript|LOC_Os03g31650.1|protein_coding|4/4|c.3674G>T|p.His1225Leu|3674/3684|3674/3684|1225/1227||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2057 3 18071668 SNP-3.18070449. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g31650|LOC_Os03g31650|transcript|LOC_Os03g31650.1|protein_coding|3/4|c.2947G>T|p.Glu983*|2947/3684|2947/3684|983/1227||;LOF=(LOC_Os03g31650|LOC_Os03g31650|1|1.00);NMD=(LOC_Os03g31650|LOC_Os03g31650|1|1.00) GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2058 3 18074088 SNP-3.18072869. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31650|LOC_Os03g31650|transcript|LOC_Os03g31650.1|protein_coding|1/3|c.1110-132G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2059 3 18076201 SNP-3.18074982. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31650-LOC_Os03g31660|LOC_Os03g31650-LOC_Os03g31660|intergenic_region|LOC_Os03g31650-LOC_Os03g31660|||n.18076201A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/0 1/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 0/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2060 3 18076436 SNP-3.18075217. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31650-LOC_Os03g31660|LOC_Os03g31650-LOC_Os03g31660|intergenic_region|LOC_Os03g31650-LOC_Os03g31660|||n.18076436C>A|||||| GT 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2061 3 18078290 SNP-3.18077071. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31650-LOC_Os03g31660|LOC_Os03g31650-LOC_Os03g31660|intergenic_region|LOC_Os03g31650-LOC_Os03g31660|||n.18078290C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/1 ./. 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2062 3 18079786 SNP-3.18078567. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31650-LOC_Os03g31660|LOC_Os03g31650-LOC_Os03g31660|intergenic_region|LOC_Os03g31650-LOC_Os03g31660|||n.18079786A>G|||||| GT 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2063 3 18079936 SNP-3.18078717. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31660|LOC_Os03g31660|transcript|LOC_Os03g31660.1|protein_coding|1/2|c.95C>A|p.Ile32Asn|95/1716|95/1716|32/571||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2064 3 18080256 SNP-3.18079037. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31660|LOC_Os03g31660|transcript|LOC_Os03g31660.1|protein_coding|1/2|c.415C>A|p.Leu139Met|415/1716|415/1716|139/571||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2065 3 18080395 SNP-3.18079176. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31660|LOC_Os03g31660|transcript|LOC_Os03g31660.1|protein_coding|1/2|c.554C>A|p.Leu185Gln|554/1716|554/1716|185/571||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 ./. 0/1 0/0 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2066 3 18080830 SNP-3.18079611. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31660|LOC_Os03g31660|transcript|LOC_Os03g31660.1|protein_coding|1/2|c.989C>A|p.Arg330Lys|989/1716|989/1716|330/571||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/1 0/1 0/1 ./. 0/1 1/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/1 0/1 0/0 0/1 0/1 0/0 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2067 3 18080836 SNP-3.18079617. A G . . PR;ANN=G|missense_variant&splice_region_variant|MODERATE|LOC_Os03g31660|LOC_Os03g31660|transcript|LOC_Os03g31660.1|protein_coding|1/2|c.995A>G|p.Ser332Cys|995/1716|995/1716|332/571||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2068 3 18081440 SNP-3.18080221. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31660|LOC_Os03g31660|transcript|LOC_Os03g31660.1|protein_coding|2/2|c.1365C>A|p.Asn455Lys|1365/1716|1365/1716|455/571|| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2069 3 18082040 SNP-3.18080821. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31670|LOC_Os03g31670|transcript|LOC_Os03g31670.1|protein_coding|3/3|c.468G>T|p.Ala156Ala|468/522|468/522|156/173||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2070 3 18082263 SNP-3.18081044. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31670|LOC_Os03g31670|transcript|LOC_Os03g31670.1|protein_coding|2/2|c.351-106T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2071 3 18082361 SNP-3.18081142. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31670|LOC_Os03g31670|transcript|LOC_Os03g31670.1|protein_coding|2/2|c.350+145T>C|||||| GT 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2072 3 18083205 SNP-3.18081986. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31670-LOC_Os03g31679|LOC_Os03g31670-LOC_Os03g31679|intergenic_region|LOC_Os03g31670-LOC_Os03g31679|||n.18083205A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2073 3 18083836 SNP-3.18082617. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31670-LOC_Os03g31679|LOC_Os03g31670-LOC_Os03g31679|intergenic_region|LOC_Os03g31670-LOC_Os03g31679|||n.18083836C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2074 3 18083935 SNP-3.18082716. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31670-LOC_Os03g31679|LOC_Os03g31670-LOC_Os03g31679|intergenic_region|LOC_Os03g31670-LOC_Os03g31679|||n.18083935A>G|||||| GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 0/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2075 3 18084528 SNP-3.18083309. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31670-LOC_Os03g31679|LOC_Os03g31670-LOC_Os03g31679|intergenic_region|LOC_Os03g31670-LOC_Os03g31679|||n.18084528C>A|||||| GT ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2076 3 18084790 SNP-3.18083571. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31670-LOC_Os03g31679|LOC_Os03g31670-LOC_Os03g31679|intergenic_region|LOC_Os03g31670-LOC_Os03g31679|||n.18084790C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2077 3 18085078 SNP-3.18083859. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31670-LOC_Os03g31679|LOC_Os03g31670-LOC_Os03g31679|intergenic_region|LOC_Os03g31670-LOC_Os03g31679|||n.18085078C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2078 3 18086336 SNP-3.18085117. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31679|LOC_Os03g31679|transcript|LOC_Os03g31679.1|protein_coding|2/2|c.251+256A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 ./. 0/1 ./. 1/1 0/1 ./. ./. 0/0 ./. 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2079 3 18087754 SNP-3.18086535. C A . . PR;ANN=A|splice_region_variant&intron_variant|LOW|LOC_Os03g31690|LOC_Os03g31690|transcript|LOC_Os03g31690.1|protein_coding|9/9|c.1575-5G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2080 3 18088128 SNP-3.18086909. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31690|LOC_Os03g31690|transcript|LOC_Os03g31690.1|protein_coding|8/9|c.1502-32T>C|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 1/1 0/1 ./. ./. 0/0 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2081 3 18091827 SNP-3.18090608. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31690|LOC_Os03g31690|transcript|LOC_Os03g31690.1|protein_coding|2/9|c.349+381G>T|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2082 3 18094199 SNP-3.18092980. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31690-LOC_Os03g31700|LOC_Os03g31690-LOC_Os03g31700|intergenic_region|LOC_Os03g31690-LOC_Os03g31700|||n.18094199C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2083 3 18095781 SNP-3.18094562. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31690-LOC_Os03g31700|LOC_Os03g31690-LOC_Os03g31700|intergenic_region|LOC_Os03g31690-LOC_Os03g31700|||n.18095781C>A|||||| GT 0/0 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/1 ./. 0/1 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 1/1 ./. 0/1 0/1 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 0/0 0/1 ./. 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2084 3 18098167 SNP-3.18096948. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31690-LOC_Os03g31700|LOC_Os03g31690-LOC_Os03g31700|intergenic_region|LOC_Os03g31690-LOC_Os03g31700|||n.18098167C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2085 3 18098474 SNP-3.18097255. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31690-LOC_Os03g31700|LOC_Os03g31690-LOC_Os03g31700|intergenic_region|LOC_Os03g31690-LOC_Os03g31700|||n.18098474C>A|||||| GT 0/0 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2086 3 18100013 SNP-3.18098794. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31690-LOC_Os03g31700|LOC_Os03g31690-LOC_Os03g31700|intergenic_region|LOC_Os03g31690-LOC_Os03g31700|||n.18100013A>G|||||| GT 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2087 3 18101093 SNP-3.18099874. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31700-LOC_Os03g31706|LOC_Os03g31700-LOC_Os03g31706|intergenic_region|LOC_Os03g31700-LOC_Os03g31706|||n.18101093C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2088 3 18101803 SNP-3.18100584. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31700-LOC_Os03g31706|LOC_Os03g31700-LOC_Os03g31706|intergenic_region|LOC_Os03g31700-LOC_Os03g31706|||n.18101803A>G|||||| GT 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2089 3 18102046 SNP-3.18100827. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31700-LOC_Os03g31706|LOC_Os03g31700-LOC_Os03g31706|intergenic_region|LOC_Os03g31700-LOC_Os03g31706|||n.18102046A>G|||||| GT 1/1 0/0 ./. ./. 0/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2090 3 18107278 SNP-3.18106059. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31700-LOC_Os03g31706|LOC_Os03g31700-LOC_Os03g31706|intergenic_region|LOC_Os03g31700-LOC_Os03g31706|||n.18107278A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/1 0/1 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2091 3 18108444 SNP-3.18107225. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31700-LOC_Os03g31706|LOC_Os03g31700-LOC_Os03g31706|intergenic_region|LOC_Os03g31700-LOC_Os03g31706|||n.18108444C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2092 3 18109625 SNP-3.18108406. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31700-LOC_Os03g31706|LOC_Os03g31700-LOC_Os03g31706|intergenic_region|LOC_Os03g31700-LOC_Os03g31706|||n.18109625C>A|||||| GT ./. 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2093 3 18110366 SNP-3.18109147. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31706|LOC_Os03g31706|transcript|LOC_Os03g31706.2|protein_coding|3/3|c.104-165T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2094 3 18111046 SNP-3.18109827. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31706|LOC_Os03g31706|transcript|LOC_Os03g31706.2|protein_coding|3/4|c.54T>C|p.Gln18His|1086/1333|54/231|18/76||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2095 3 18112999 SNP-3.18111780. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31706-LOC_Os03g31730|LOC_Os03g31706-LOC_Os03g31730|intergenic_region|LOC_Os03g31706-LOC_Os03g31730|||n.18112999C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2096 3 18117044 SNP-3.18115825. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31706-LOC_Os03g31730|LOC_Os03g31706-LOC_Os03g31730|intergenic_region|LOC_Os03g31706-LOC_Os03g31730|||n.18117044C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2097 3 18117720 SNP-3.18116501. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31706-LOC_Os03g31730|LOC_Os03g31706-LOC_Os03g31730|intergenic_region|LOC_Os03g31706-LOC_Os03g31730|||n.18117720A>G|||||| GT 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2098 3 18123585 SNP-3.18122366. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|2/22|c.-13+3845C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2099 3 18125023 SNP-3.18123804. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|2/22|c.-12-2725C>A|||||| GT ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2100 3 18125204 SNP-3.18123985. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|2/22|c.-12-2544A>G|||||| GT 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 0/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 0/1 ./. 1/1 0/0 0/1 0/1 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2101 3 18127525 SNP-3.18126306. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|2/22|c.-12-223A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2102 3 18129260 SNP-3.18128041. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|3/22|c.68-31A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2103 3 18130823 SNP-3.18129604. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|6/23|c.282C>A|p.Asp94Glu|520/3243|282/2658|94/885|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2104 3 18130888 SNP-3.18129669. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|6/23|c.347C>A|p.Glu116Glu|585/3243|347/2658|116/885||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2105 3 18132049 SNP-3.18130830. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|6/22|c.790+718A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2106 3 18134289 SNP-3.18133070. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|11/22|c.1181+134C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2107 3 18137206 SNP-3.18135987. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|16/23|c.1593C>A|p.Leu531Leu|1831/3243|1593/2658|531/885||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2108 3 18137340 SNP-3.18136121. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|16/23|c.1727C>A|p.Ile576Asn|1965/3243|1727/2658|576/885||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2109 3 18140715 SNP-3.18139496. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|18/22|c.1992+32A>G|||||| GT 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2110 3 18141261 SNP-3.18140042. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|18/22|c.1993-147C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2111 3 18141694 SNP-3.18140475. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|20/23|c.2175A>G|p.His725Gln|2413/3243|2175/2658|725/885||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2112 3 18143019 SNP-3.18141800. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g31730|LOC_Os03g31730|transcript|LOC_Os03g31730.1|protein_coding|23/23|c.*69C>A|||||165| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2113 3 18145208 SNP-3.18143989. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31730-LOC_Os03g31740|LOC_Os03g31730-LOC_Os03g31740|intergenic_region|LOC_Os03g31730-LOC_Os03g31740|||n.18145208C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2114 3 18147444 SNP-3.18146225. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31730-LOC_Os03g31740|LOC_Os03g31730-LOC_Os03g31740|intergenic_region|LOC_Os03g31730-LOC_Os03g31740|||n.18147444C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2115 3 18148988 SNP-3.18147769. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31740-LOC_Os03g31750|LOC_Os03g31740-LOC_Os03g31750|intergenic_region|LOC_Os03g31740-LOC_Os03g31750|||n.18148988C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2116 3 18149311 SNP-3.18148092. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31740-LOC_Os03g31750|LOC_Os03g31740-LOC_Os03g31750|intergenic_region|LOC_Os03g31740-LOC_Os03g31750|||n.18149311C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2117 3 18149640 SNP-3.18148421. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31740-LOC_Os03g31750|LOC_Os03g31740-LOC_Os03g31750|intergenic_region|LOC_Os03g31740-LOC_Os03g31750|||n.18149640A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/1 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2118 3 18151046 SNP-3.18149827. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31740-LOC_Os03g31750|LOC_Os03g31740-LOC_Os03g31750|intergenic_region|LOC_Os03g31740-LOC_Os03g31750|||n.18151046A>G|||||| GT 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2119 3 18151458 SNP-3.18150239. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31740-LOC_Os03g31750|LOC_Os03g31740-LOC_Os03g31750|intergenic_region|LOC_Os03g31740-LOC_Os03g31750|||n.18151458C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2120 3 18151506 SNP-3.18150287. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31740-LOC_Os03g31750|LOC_Os03g31740-LOC_Os03g31750|intergenic_region|LOC_Os03g31740-LOC_Os03g31750|||n.18151506A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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2121 3 18152715 SNP-3.18151496. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31740-LOC_Os03g31750|LOC_Os03g31740-LOC_Os03g31750|intergenic_region|LOC_Os03g31740-LOC_Os03g31750|||n.18152715C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 1/1 ./. 0/0 ./. 0/1 0/1 ./. 1/1 0/1 0/1 ./. 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2122 3 18154695 SNP-3.18153476. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31750|LOC_Os03g31750|transcript|LOC_Os03g31750.3|protein_coding|13/17|c.2199+69T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g31750|LOC_Os03g31750|transcript|LOC_Os03g31750.2|protein_coding|12/16|c.1707+69T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g31750|LOC_Os03g31750|transcript|LOC_Os03g31750.1|protein_coding|13/17|c.2184+69T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2123 3 18158943 SNP-3.18157724. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g31750|LOC_Os03g31750|transcript|LOC_Os03g31750.2|protein_coding|1/17|c.-75G>T|||||343|WARNING_REF_DOES_NOT_MATCH_GENOME,A|intron_variant|MODIFIER|LOC_Os03g31750|LOC_Os03g31750|transcript|LOC_Os03g31750.3|protein_coding|2/17|c.475-340G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g31750|LOC_Os03g31750|transcript|LOC_Os03g31750.1|protein_coding|2/17|c.475-340G>T|||||| GT 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2124 3 18160285 SNP-3.18159066. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31750-LOC_Os03g31760|LOC_Os03g31750-LOC_Os03g31760|intergenic_region|LOC_Os03g31750-LOC_Os03g31760|||n.18160285C>A|||||| GT 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2125 3 18160356 SNP-3.18159137. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31750-LOC_Os03g31760|LOC_Os03g31750-LOC_Os03g31760|intergenic_region|LOC_Os03g31750-LOC_Os03g31760|||n.18160356C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2126 3 18162961 SNP-3.18161742. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31750-LOC_Os03g31760|LOC_Os03g31750-LOC_Os03g31760|intergenic_region|LOC_Os03g31750-LOC_Os03g31760|||n.18162961A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2127 3 18163077 SNP-3.18161858. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31750-LOC_Os03g31760|LOC_Os03g31750-LOC_Os03g31760|intergenic_region|LOC_Os03g31750-LOC_Os03g31760|||n.18163077A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2128 3 18163718 SNP-3.18162499. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31750-LOC_Os03g31760|LOC_Os03g31750-LOC_Os03g31760|intergenic_region|LOC_Os03g31750-LOC_Os03g31760|||n.18163718A>G|||||| GT 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2129 3 18163964 SNP-3.18162745. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31750-LOC_Os03g31760|LOC_Os03g31750-LOC_Os03g31760|intergenic_region|LOC_Os03g31750-LOC_Os03g31760|||n.18163964C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2130 3 18164335 SNP-3.18163116. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31750-LOC_Os03g31760|LOC_Os03g31750-LOC_Os03g31760|intergenic_region|LOC_Os03g31750-LOC_Os03g31760|||n.18164335C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2131 3 18166088 SNP-3.18164869. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31750-LOC_Os03g31760|LOC_Os03g31750-LOC_Os03g31760|intergenic_region|LOC_Os03g31750-LOC_Os03g31760|||n.18166088A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2132 3 18166305 SNP-3.18165086. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31750-LOC_Os03g31760|LOC_Os03g31750-LOC_Os03g31760|intergenic_region|LOC_Os03g31750-LOC_Os03g31760|||n.18166305C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2133 3 18169292 SNP-3.18168073. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31760|LOC_Os03g31760|transcript|LOC_Os03g31760.1|protein_coding|4/5|c.422+352G>T|||||| GT ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2134 3 18170132 SNP-3.18168913. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31760|LOC_Os03g31760|transcript|LOC_Os03g31760.1|protein_coding|3/6|c.325T>C|p.Met109Leu|325/1455|325/657|109/218||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2135 3 18170561 SNP-3.18169342. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31760|LOC_Os03g31760|transcript|LOC_Os03g31760.1|protein_coding|2/5|c.281+80G>T|||||| GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2136 3 18171460 SNP-3.18170241. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31760-LOC_Os03g31770|LOC_Os03g31760-LOC_Os03g31770|intergenic_region|LOC_Os03g31760-LOC_Os03g31770|||n.18171460C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2137 3 18171786 SNP-3.18170567. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31760-LOC_Os03g31770|LOC_Os03g31760-LOC_Os03g31770|intergenic_region|LOC_Os03g31760-LOC_Os03g31770|||n.18171786A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2138 3 18175859 SNP-3.18174640. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18175859C>A|||||| GT 0/0 1/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 ./. 0/1 0/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/1 0/0 ./. 0/1 0/1 ./. ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/1 0/1 ./. 1/1 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2139 3 18176323 SNP-3.18175104. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18176323C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2140 3 18176660 SNP-3.18175441. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18176660A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2141 3 18176783 SNP-3.18175564. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18176783C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2142 3 18178565 SNP-3.18177346. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18178565A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/1 ./. 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2143 3 18178993 SNP-3.18177774. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18178993C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2144 3 18180388 SNP-3.18179169. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18180388C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/1 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2145 3 18180561 SNP-3.18179342. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18180561C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/1 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/1 1/1 ./. 0/1 ./. ./. 0/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2146 3 18181071 SNP-3.18179852. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18181071A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2147 3 18181591 SNP-3.18180372. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31770-LOC_Os03g31790|LOC_Os03g31770-LOC_Os03g31790|intergenic_region|LOC_Os03g31770-LOC_Os03g31790|||n.18181591C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2148 3 18184907 SNP-3.18183688. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18184907A>G|||||| GT ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2149 3 18189053 SNP-3.18187834. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18189053A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2150 3 18189077 SNP-3.18187858. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18189077A>G|||||| GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2151 3 18190742 SNP-3.18189523. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18190742C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2152 3 18191154 SNP-3.18189935. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18191154A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2153 3 18194227 SNP-3.18193008. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18194227C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2154 3 18194382 SNP-3.18193163. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18194382C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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2155 3 18195767 SNP-3.18194548. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18195767A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 |
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2156 3 18195904 SNP-3.18194685. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18195904A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 |
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2157 3 18197169 SNP-3.18195950. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18197169A>G|||||| GT 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2158 3 18197577 SNP-3.18196358. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18197577A>G|||||| GT 1/1 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/1 ./. 1/1 0/1 0/0 0/0 ./. 1/1 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 0/1 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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2159 3 18197640 SNP-3.18196421. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18197640A>G|||||| GT 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/1 ./. 0/1 0/0 0/1 ./. 0/0 1/1 0/0 ./. ./. 0/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 |
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2160 3 18197797 SNP-3.18196578. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18197797C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 |
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2161 3 18198206 SNP-3.18196987. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18198206C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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2162 3 18201428 SNP-3.18200209. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18201428C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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2163 3 18202173 SNP-3.18200954. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18202173C>A|||||| GT 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2164 3 18204250 SNP-3.18203031. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18204250A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2165 3 18205698 SNP-3.18204479. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18205698C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2166 3 18206732 SNP-3.18205513. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18206732A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2167 3 18206990 SNP-3.18205771. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18206990A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2168 3 18207367 SNP-3.18206148. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18207367C>A|||||| GT 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2169 3 18210131 SNP-3.18208912. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31790-LOC_Os03g31839|LOC_Os03g31790-LOC_Os03g31839|intergenic_region|LOC_Os03g31790-LOC_Os03g31839|||n.18210131A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2170 3 18212977 SNP-3.18211758. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31839|LOC_Os03g31839|transcript|LOC_Os03g31839.1|protein_coding|4/18|c.544-301A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2171 3 18217394 SNP-3.18216175. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31839|LOC_Os03g31839|transcript|LOC_Os03g31839.1|protein_coding|9/19|c.1543C>A|p.Glu515Lys|1543/5514|1543/5514|515/1837||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 ./. 0/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/1 0/1 0/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. ./. 0/1 1/1 0/0 0/0 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2172 3 18218772 SNP-3.18217553. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31839|LOC_Os03g31839|transcript|LOC_Os03g31839.1|protein_coding|10/19|c.2888C>A|p.His963His|2888/5514|2888/5514|963/1837||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 0/1 0/1 ./. 1/1 0/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2173 3 18220398 SNP-3.18219179. C A . . PR;ANN=A|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g31839|LOC_Os03g31839|transcript|LOC_Os03g31839.1|protein_coding|11/18|c.3927-2C>A||||||;LOF=(LOC_Os03g31839|LOC_Os03g31839|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2174 3 18221043 SNP-3.18219824. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31839|LOC_Os03g31839|transcript|LOC_Os03g31839.1|protein_coding|14/19|c.4414A>G|p.Asp1472Asp|4414/5514|4414/5514|1472/1837||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2175 3 18222058 SNP-3.18220839. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g31839|LOC_Os03g31839|transcript|LOC_Os03g31839.1|protein_coding|18/19|c.5179C>A|p.Leu1727Met|5179/5514|5179/5514|1727/1837|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2176 3 18222085 SNP-3.18220866. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31839|LOC_Os03g31839|transcript|LOC_Os03g31839.1|protein_coding|18/19|c.5206A>G|p.Asn1736Asp|5206/5514|5206/5514|1736/1837|| GT 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2177 3 18223715 SNP-3.18222496. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18223715A>G|||||| GT ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2178 3 18223828 SNP-3.18222609. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18223828C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2179 3 18224813 SNP-3.18223594. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18224813C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 0/1 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2180 3 18226980 SNP-3.18225761. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18226980C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2181 3 18227370 SNP-3.18226151. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18227370C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2182 3 18229318 SNP-3.18228099. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18229318C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2183 3 18232933 SNP-3.18231714. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18232933C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2184 3 18234891 SNP-3.18233672. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18234891A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2185 3 18235515 SNP-3.18234296. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18235515C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2186 3 18235969 SNP-3.18234750. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31870-LOC_Os03g31880|LOC_Os03g31870-LOC_Os03g31880|intergenic_region|LOC_Os03g31870-LOC_Os03g31880|||n.18235969A>G|||||| GT 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/1 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 ./. ./. ./. 1/1 1/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2187 3 18250460 SNP-3.18249241. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31910|LOC_Os03g31910|transcript|LOC_Os03g31910.1|protein_coding|2/6|c.487-48C>A|||||| GT ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2188 3 18251991 SNP-3.18250772. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31910|LOC_Os03g31910|transcript|LOC_Os03g31910.1|protein_coding|4/6|c.1800+99A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2189 3 18252450 SNP-3.18251231. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31910|LOC_Os03g31910|transcript|LOC_Os03g31910.1|protein_coding|4/6|c.1801-540A>G|||||| GT 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2190 3 18255353 SNP-3.18254134. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31910-LOC_Os03g31920|LOC_Os03g31910-LOC_Os03g31920|intergenic_region|LOC_Os03g31910-LOC_Os03g31920|||n.18255353A>G|||||| GT 0/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/1 0/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2191 3 18265320 SNP-3.18264101. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31930-LOC_Os03g31934|LOC_Os03g31930-LOC_Os03g31934|intergenic_region|LOC_Os03g31930-LOC_Os03g31934|||n.18265320A>G|||||| GT ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/1 ./. 0/0 0/0 1/1 ./. 0/1 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2192 3 18265555 SNP-3.18264336. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31930-LOC_Os03g31934|LOC_Os03g31930-LOC_Os03g31934|intergenic_region|LOC_Os03g31930-LOC_Os03g31934|||n.18265555C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2193 3 18265571 SNP-3.18264352. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31934|LOC_Os03g31934|transcript|LOC_Os03g31934.1|protein_coding|1/1|c.14A>G|p.Pro5Arg|14/261|14/261|5/86||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2194 3 18266303 SNP-3.18265084. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31934-LOC_Os03g31940|LOC_Os03g31934-LOC_Os03g31940|intergenic_region|LOC_Os03g31934-LOC_Os03g31940|||n.18266303C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2195 3 18268430 SNP-3.18267211. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31934-LOC_Os03g31940|LOC_Os03g31934-LOC_Os03g31940|intergenic_region|LOC_Os03g31934-LOC_Os03g31940|||n.18268430C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2196 3 18269402 SNP-3.18268183. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31934-LOC_Os03g31940|LOC_Os03g31934-LOC_Os03g31940|intergenic_region|LOC_Os03g31934-LOC_Os03g31940|||n.18269402C>A|||||| GT 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/1 0/0 0/1 ./. 1/1 0/1 1/1 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 ./. ./. ./. ./. 0/1 0/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/1 ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2197 3 18270795 SNP-3.18269576. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31934-LOC_Os03g31940|LOC_Os03g31934-LOC_Os03g31940|intergenic_region|LOC_Os03g31934-LOC_Os03g31940|||n.18270795C>A|||||| GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2198 3 18274457 SNP-3.18273238. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31934-LOC_Os03g31940|LOC_Os03g31934-LOC_Os03g31940|intergenic_region|LOC_Os03g31934-LOC_Os03g31940|||n.18274457A>G|||||| GT 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2199 3 18277824 SNP-3.18276605. C A . . PR;ANN=A|splice_region_variant&synonymous_variant|LOW|LOC_Os03g31940|LOC_Os03g31940|transcript|LOC_Os03g31940.1|protein_coding|2/3|c.160C>A|p.Asn54Asn|160/711|160/711|54/236||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2200 3 18278591 SNP-3.18277372. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31940|LOC_Os03g31940|transcript|LOC_Os03g31940.1|protein_coding|3/3|c.443A>G|p.Pro148Arg|443/711|443/711|148/236||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/1 0/1 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2201 3 18278747 SNP-3.18277528. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31940|LOC_Os03g31940|transcript|LOC_Os03g31940.1|protein_coding|3/3|c.599A>G|p.Ala200Gly|599/711|599/711|200/236||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2202 3 18279472 SNP-3.18278253. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g31944|LOC_Os03g31944|transcript|LOC_Os03g31944.1|protein_coding|3/3|c.448T>C|p.Arg150Arg|448/642|448/642|150/213||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2203 3 18281115 SNP-3.18279896. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31950|LOC_Os03g31950|transcript|LOC_Os03g31950.1|protein_coding|1/1|c.432+241C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2204 3 18283201 SNP-3.18281982. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31950-LOC_Os03g31970|LOC_Os03g31950-LOC_Os03g31970|intergenic_region|LOC_Os03g31950-LOC_Os03g31970|||n.18283201C>A|||||| GT 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2205 3 18284753 SNP-3.18283534. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g31970|LOC_Os03g31970|transcript|LOC_Os03g31970.1|protein_coding|1/2|c.25A>G|p.Gln9Glu|25/264|25/264|9/87||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2206 3 18286194 SNP-3.18284975. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31970-LOC_Os03g31980|LOC_Os03g31970-LOC_Os03g31980|intergenic_region|LOC_Os03g31970-LOC_Os03g31980|||n.18286194A>G|||||| GT ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 ./. ./. 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2207 3 18289270 SNP-3.18288051. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31980-LOC_Os03g31986|LOC_Os03g31980-LOC_Os03g31986|intergenic_region|LOC_Os03g31980-LOC_Os03g31986|||n.18289270C>A|||||| GT ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2208 3 18289941 SNP-3.18288722. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g31980-LOC_Os03g31986|LOC_Os03g31980-LOC_Os03g31986|intergenic_region|LOC_Os03g31980-LOC_Os03g31986|||n.18289941A>G|||||| GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2209 3 18291412 SNP-3.18290193. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31980-LOC_Os03g31986|LOC_Os03g31980-LOC_Os03g31986|intergenic_region|LOC_Os03g31980-LOC_Os03g31986|||n.18291412C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2210 3 18292401 SNP-3.18291182. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g31986|LOC_Os03g31986|transcript|LOC_Os03g31986.1|protein_coding|2/9|c.762C>A|p.Gln254Gln|762/3954|762/3954|254/1317||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2211 3 18299589 SNP-3.18298370. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g31992|LOC_Os03g31992|transcript|LOC_Os03g31992.1|protein_coding|1/1|c.36-166C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/1 ./. 0/1 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2212 3 18299632 SNP-3.18298413. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31992|LOC_Os03g31992|transcript|LOC_Os03g31992.1|protein_coding|1/1|c.36-123A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2213 3 18299669 SNP-3.18298450. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g31992|LOC_Os03g31992|transcript|LOC_Os03g31992.1|protein_coding|1/1|c.36-86A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/1 ./. 1/1 0/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2214 3 18300383 SNP-3.18299164. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31992-LOC_Os03g32000|LOC_Os03g31992-LOC_Os03g32000|intergenic_region|LOC_Os03g31992-LOC_Os03g32000|||n.18300383C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 ./. 0/0 0/1 0/0 1/1 ./. 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2215 3 18301062 SNP-3.18299843. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g31992-LOC_Os03g32000|LOC_Os03g31992-LOC_Os03g32000|intergenic_region|LOC_Os03g31992-LOC_Os03g32000|||n.18301062C>A|||||| GT 0/1 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2216 3 18305619 SNP-3.18304400. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32000-LOC_Os03g32010|LOC_Os03g32000-LOC_Os03g32010|intergenic_region|LOC_Os03g32000-LOC_Os03g32010|||n.18305619A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2217 3 18310618 SNP-3.18309399. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32000-LOC_Os03g32010|LOC_Os03g32000-LOC_Os03g32010|intergenic_region|LOC_Os03g32000-LOC_Os03g32010|||n.18310618C>A|||||| GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2218 3 18310792 SNP-3.18309573. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32000-LOC_Os03g32010|LOC_Os03g32000-LOC_Os03g32010|intergenic_region|LOC_Os03g32000-LOC_Os03g32010|||n.18310792A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2219 3 18318196 SNP-3.18316977. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32020|LOC_Os03g32020|transcript|LOC_Os03g32020.1|protein_coding|3/3|c.180G>T|p.Phe60Phe|180/273|180/273|60/90||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2220 3 18318613 SNP-3.18317394. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g32020|LOC_Os03g32020|transcript|LOC_Os03g32020.1|protein_coding|1/3|c.26T>C|p.Pro9Pro|26/273|26/273|9/90||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2221 3 18318628 SNP-3.18317409. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32020|LOC_Os03g32020|transcript|LOC_Os03g32020.1|protein_coding|1/3|c.11G>T|p.Ser4Phe|11/273|11/273|4/90||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2222 3 18319097 SNP-3.18317878. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32030|LOC_Os03g32030|transcript|LOC_Os03g32030.1|protein_coding|1/1|c.158C>A|p.Pro53Gln|158/528|158/528|53/175|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2223 3 18319439 SNP-3.18318220. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32030|LOC_Os03g32030|transcript|LOC_Os03g32030.1|protein_coding|1/1|c.500A>G|p.Thr167Ser|500/528|500/528|167/175||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2224 3 18328011 SNP-3.18326792. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32050|LOC_Os03g32050|transcript|LOC_Os03g32050.1|protein_coding|3/3|c.617-2174T>C|||||| GT 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2225 3 18333137 SNP-3.18331918. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32050-LOC_Os03g32070|LOC_Os03g32050-LOC_Os03g32070|intergenic_region|LOC_Os03g32050-LOC_Os03g32070|||n.18333137A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2226 3 18341760 SNP-3.18340541. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32070|LOC_Os03g32070|transcript|LOC_Os03g32070.1|protein_coding|3/5|c.819+562A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/1 1/1 0/0 0/1 1/1 0/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2227 3 18347733 SNP-3.18346514. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32070-LOC_Os03g32090|LOC_Os03g32070-LOC_Os03g32090|intergenic_region|LOC_Os03g32070-LOC_Os03g32090|||n.18347733A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2228 3 18364447 SNP-3.18363228. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32090-LOC_Os03g32100|LOC_Os03g32090-LOC_Os03g32100|intergenic_region|LOC_Os03g32090-LOC_Os03g32100|||n.18364447A>G|||||| GT 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2229 3 18372495 SNP-3.18371276. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32100-LOC_Os03g32119|LOC_Os03g32100-LOC_Os03g32119|intergenic_region|LOC_Os03g32100-LOC_Os03g32119|||n.18372495C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2230 3 18372682 SNP-3.18371463. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32100-LOC_Os03g32119|LOC_Os03g32100-LOC_Os03g32119|intergenic_region|LOC_Os03g32100-LOC_Os03g32119|||n.18372682A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2231 3 18373365 SNP-3.18372146. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32100-LOC_Os03g32119|LOC_Os03g32100-LOC_Os03g32119|intergenic_region|LOC_Os03g32100-LOC_Os03g32119|||n.18373365C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/1 0/1 ./. 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2232 3 18390010 SNP-3.18388791. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32140-LOC_Os03g32150|LOC_Os03g32140-LOC_Os03g32150|intergenic_region|LOC_Os03g32140-LOC_Os03g32150|||n.18390010A>G|||||| GT 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2233 3 18407077 SNP-3.18405858. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32170-LOC_Os03g32190|LOC_Os03g32170-LOC_Os03g32190|intergenic_region|LOC_Os03g32170-LOC_Os03g32190|||n.18407077C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2234 3 18407351 SNP-3.18406132. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32170-LOC_Os03g32190|LOC_Os03g32170-LOC_Os03g32190|intergenic_region|LOC_Os03g32170-LOC_Os03g32190|||n.18407351C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 ./. 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2235 3 18408572 SNP-3.18407353. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32190|LOC_Os03g32190|transcript|LOC_Os03g32190.1|protein_coding|2/2|c.569G>T|p.Arg190Ile|2075/2229|569/723|190/240|| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2236 3 18408752 SNP-3.18407533. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32190|LOC_Os03g32190|transcript|LOC_Os03g32190.1|protein_coding|2/2|c.389G>T|p.Ala130Val|1895/2229|389/723|130/240||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 ./. ./. 0/1 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 0/1 0/1 0/0 ./. 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2237 3 18409058 SNP-3.18407839. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32190|LOC_Os03g32190|transcript|LOC_Os03g32190.1|protein_coding|2/2|c.83G>T|p.Arg28Leu|1589/2229|83/723|28/240|| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2238 3 18409330 SNP-3.18408111. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g32190|LOC_Os03g32190|transcript|LOC_Os03g32190.1|protein_coding|1/2|c.-104T>C|||||190|WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2239 3 18409331 SNP-3.18408112. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g32190|LOC_Os03g32190|transcript|LOC_Os03g32190.1|protein_coding|1/2|c.-105T>C|||||191| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2240 3 18409522 SNP-3.18408303. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g32190|LOC_Os03g32190|transcript|LOC_Os03g32190.1|protein_coding|1/2|c.-296G>T|||||382|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2241 3 18410408 SNP-3.18409189. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32180|LOC_Os03g32180|transcript|LOC_Os03g32180.1|protein_coding|1/3|c.346C>A|p.Phe116Ile|346/822|346/822|116/273||WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_premature_start_codon_gain_variant|LOW|LOC_Os03g32190|LOC_Os03g32190|transcript|LOC_Os03g32190.1|protein_coding|1/2|c.-1182G>T||||||WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g32190|LOC_Os03g32190|transcript|LOC_Os03g32190.1|protein_coding|1/2|c.-1182G>T|||||1268|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2242 3 18435790 SNP-3.18434571. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32220-LOC_Os03g32230|LOC_Os03g32220-LOC_Os03g32230|intergenic_region|LOC_Os03g32220-LOC_Os03g32230|||n.18435790C>A|||||| GT 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2243 3 18438070 SNP-3.18436851. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32230-LOC_Os03g32250|LOC_Os03g32230-LOC_Os03g32250|intergenic_region|LOC_Os03g32230-LOC_Os03g32250|||n.18438070C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2244 3 18438144 SNP-3.18436925. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32230-LOC_Os03g32250|LOC_Os03g32230-LOC_Os03g32250|intergenic_region|LOC_Os03g32230-LOC_Os03g32250|||n.18438144A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2245 3 18439247 SNP-3.18438028. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32230-LOC_Os03g32250|LOC_Os03g32230-LOC_Os03g32250|intergenic_region|LOC_Os03g32230-LOC_Os03g32250|||n.18439247A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2246 3 18442144 SNP-3.18440925. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32230-LOC_Os03g32250|LOC_Os03g32230-LOC_Os03g32250|intergenic_region|LOC_Os03g32230-LOC_Os03g32250|||n.18442144C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/1 0/1 0/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2247 3 18442726 SNP-3.18441507. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32230-LOC_Os03g32250|LOC_Os03g32230-LOC_Os03g32250|intergenic_region|LOC_Os03g32230-LOC_Os03g32250|||n.18442726A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2248 3 18443068 SNP-3.18441849. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32230-LOC_Os03g32250|LOC_Os03g32230-LOC_Os03g32250|intergenic_region|LOC_Os03g32230-LOC_Os03g32250|||n.18443068A>G|||||| GT ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2249 3 18443765 SNP-3.18442546. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32230-LOC_Os03g32250|LOC_Os03g32230-LOC_Os03g32250|intergenic_region|LOC_Os03g32230-LOC_Os03g32250|||n.18443765A>G|||||| GT 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2250 3 18444167 SNP-3.18442948. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32230-LOC_Os03g32250|LOC_Os03g32230-LOC_Os03g32250|intergenic_region|LOC_Os03g32230-LOC_Os03g32250|||n.18444167C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2251 3 18444805 SNP-3.18443586. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32250|LOC_Os03g32250|transcript|LOC_Os03g32250.1|protein_coding|1/1|c.252-37C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2252 3 18458739 SNP-3.18457520. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32270-LOC_Os03g32290|LOC_Os03g32270-LOC_Os03g32290|intergenic_region|LOC_Os03g32270-LOC_Os03g32290|||n.18458739C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2253 3 18462480 SNP-3.18461261. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32270-LOC_Os03g32290|LOC_Os03g32270-LOC_Os03g32290|intergenic_region|LOC_Os03g32270-LOC_Os03g32290|||n.18462480C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2254 3 18463409 SNP-3.18462190. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32270-LOC_Os03g32290|LOC_Os03g32270-LOC_Os03g32290|intergenic_region|LOC_Os03g32270-LOC_Os03g32290|||n.18463409A>G|||||| GT ./. 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2255 3 18463744 SNP-3.18462525. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32270-LOC_Os03g32290|LOC_Os03g32270-LOC_Os03g32290|intergenic_region|LOC_Os03g32270-LOC_Os03g32290|||n.18463744A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2256 3 18467139 SNP-3.18465920. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32270-LOC_Os03g32290|LOC_Os03g32270-LOC_Os03g32290|intergenic_region|LOC_Os03g32270-LOC_Os03g32290|||n.18467139A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2257 3 18467606 SNP-3.18466387. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32270-LOC_Os03g32290|LOC_Os03g32270-LOC_Os03g32290|intergenic_region|LOC_Os03g32270-LOC_Os03g32290|||n.18467606C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2258 3 18475869 SNP-3.18474650. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32270-LOC_Os03g32290|LOC_Os03g32270-LOC_Os03g32290|intergenic_region|LOC_Os03g32270-LOC_Os03g32290|||n.18475869A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2259 3 18480186 SNP-3.18478967. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32290-LOC_Os03g32302|LOC_Os03g32290-LOC_Os03g32302|intergenic_region|LOC_Os03g32290-LOC_Os03g32302|||n.18480186C>A|||||| GT 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2260 3 18481758 SNP-3.18480539. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32290-LOC_Os03g32302|LOC_Os03g32290-LOC_Os03g32302|intergenic_region|LOC_Os03g32290-LOC_Os03g32302|||n.18481758C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2261 3 18483130 SNP-3.18481911. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32302|LOC_Os03g32302|transcript|LOC_Os03g32302.1|protein_coding|1/1|c.58A>G|p.His20Asp|310/800|58/375|20/124||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2262 3 18484788 SNP-3.18483569. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32302-LOC_Os03g32314|LOC_Os03g32302-LOC_Os03g32314|intergenic_region|LOC_Os03g32302-LOC_Os03g32314|||n.18484788A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. ./. 0/1 1/1 ./. ./. ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2263 3 18490760 SNP-3.18489541. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32314-LOC_Os03g32330|LOC_Os03g32314-LOC_Os03g32330|intergenic_region|LOC_Os03g32314-LOC_Os03g32330|||n.18490760C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2264 3 18493244 SNP-3.18492025. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32314-LOC_Os03g32330|LOC_Os03g32314-LOC_Os03g32330|intergenic_region|LOC_Os03g32314-LOC_Os03g32330|||n.18493244C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2265 3 18494873 SNP-3.18493654. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32314-LOC_Os03g32330|LOC_Os03g32314-LOC_Os03g32330|intergenic_region|LOC_Os03g32314-LOC_Os03g32330|||n.18494873A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2266 3 18495638 SNP-3.18494419. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32314-LOC_Os03g32330|LOC_Os03g32314-LOC_Os03g32330|intergenic_region|LOC_Os03g32314-LOC_Os03g32330|||n.18495638C>A|||||| GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2267 3 18496206 SNP-3.18494987. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32330|LOC_Os03g32330|transcript|LOC_Os03g32330.1|protein_coding|1/5|c.89A>G|p.Pro30Arg|401/1876|89/375|30/124||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2268 3 18496335 SNP-3.18495116. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32330|LOC_Os03g32330|transcript|LOC_Os03g32330.1|protein_coding|1/5|c.218C>A|p.Arg73Gln|530/1876|218/375|73/124||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2269 3 18501666 SNP-3.18500447. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32330-LOC_Os03g32350|LOC_Os03g32330-LOC_Os03g32350|intergenic_region|LOC_Os03g32330-LOC_Os03g32350|||n.18501666A>G|||||| GT ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2270 3 18501950 SNP-3.18500731. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32330-LOC_Os03g32350|LOC_Os03g32330-LOC_Os03g32350|intergenic_region|LOC_Os03g32330-LOC_Os03g32350|||n.18501950C>A|||||| GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2271 3 18503660 SNP-3.18502441. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32330-LOC_Os03g32350|LOC_Os03g32330-LOC_Os03g32350|intergenic_region|LOC_Os03g32330-LOC_Os03g32350|||n.18503660C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2272 3 18503942 SNP-3.18502723. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32330-LOC_Os03g32350|LOC_Os03g32330-LOC_Os03g32350|intergenic_region|LOC_Os03g32330-LOC_Os03g32350|||n.18503942C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2273 3 18513093 SNP-3.18511874. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32360|LOC_Os03g32360|transcript|LOC_Os03g32360.1|protein_coding|1/2|c.922C>A|p.Val308Ile|922/1212|922/1212|308/403||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2274 3 18521763 SNP-3.18520544. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32380|LOC_Os03g32380|transcript|LOC_Os03g32380.1|protein_coding|2/4|c.888C>A|p.Lys296Lys|888/2805|888/2805|296/934||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2275 3 18524055 SNP-3.18522836. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32380-LOC_Os03g32390|LOC_Os03g32380-LOC_Os03g32390|intergenic_region|LOC_Os03g32380-LOC_Os03g32390|||n.18524055C>A|||||| GT 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2276 3 18529021 SNP-3.18527802. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32390|LOC_Os03g32390|transcript|LOC_Os03g32390.1|protein_coding|2/2|c.170C>A|p.Gly57Glu|170/549|170/549|57/182||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2277 3 18530324 SNP-3.18529105. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32390-LOC_Os03g32400|LOC_Os03g32390-LOC_Os03g32400|intergenic_region|LOC_Os03g32390-LOC_Os03g32400|||n.18530324A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2278 3 18530788 SNP-3.18529569. C A . . PR;ANN=A|start_lost|HIGH|LOC_Os03g32400|LOC_Os03g32400|transcript|LOC_Os03g32400.1|protein_coding|1/1|c.2C>A|p.Met1?|241/914|2/441|1/146||WARNING_REF_DOES_NOT_MATCH_GENOME;LOF=(LOC_Os03g32400|LOC_Os03g32400|1|1.00) GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2279 3 18531959 SNP-3.18530740. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32400-LOC_Os03g32410|LOC_Os03g32400-LOC_Os03g32410|intergenic_region|LOC_Os03g32400-LOC_Os03g32410|||n.18531959A>G|||||| GT 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2280 3 18533769 SNP-3.18532550. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32400-LOC_Os03g32410|LOC_Os03g32400-LOC_Os03g32410|intergenic_region|LOC_Os03g32400-LOC_Os03g32410|||n.18533769A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2281 3 18535113 SNP-3.18533894. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32400-LOC_Os03g32410|LOC_Os03g32400-LOC_Os03g32410|intergenic_region|LOC_Os03g32400-LOC_Os03g32410|||n.18535113C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2282 3 18535365 SNP-3.18534146. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32410|LOC_Os03g32410|transcript|LOC_Os03g32410.1|protein_coding|1/5|c.8C>A|p.Lys3Lys|8/327|8/327|3/108||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2283 3 18542604 SNP-3.18541385. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32420-LOC_Os03g32430|LOC_Os03g32420-LOC_Os03g32430|intergenic_region|LOC_Os03g32420-LOC_Os03g32430|||n.18542604C>A|||||| GT ./. 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2284 3 18543348 SNP-3.18542129. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32420-LOC_Os03g32430|LOC_Os03g32420-LOC_Os03g32430|intergenic_region|LOC_Os03g32420-LOC_Os03g32430|||n.18543348C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2285 3 18544639 SNP-3.18543420. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32430|LOC_Os03g32430|transcript|LOC_Os03g32430.1|protein_coding|1/1|c.68-298C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2286 3 18545523 SNP-3.18544304. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32430-LOC_Os03g32440|LOC_Os03g32430-LOC_Os03g32440|intergenic_region|LOC_Os03g32430-LOC_Os03g32440|||n.18545523C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2287 3 18548077 SNP-3.18546858. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32430-LOC_Os03g32440|LOC_Os03g32430-LOC_Os03g32440|intergenic_region|LOC_Os03g32430-LOC_Os03g32440|||n.18548077C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2288 3 18548882 SNP-3.18547663. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32430-LOC_Os03g32440|LOC_Os03g32430-LOC_Os03g32440|intergenic_region|LOC_Os03g32430-LOC_Os03g32440|||n.18548882C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2289 3 18549767 SNP-3.18548548. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g32440|LOC_Os03g32440|transcript|LOC_Os03g32440.1|protein_coding|3/3|c.*359G>T|||||359| GT ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2290 3 18550008 SNP-3.18548789. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g32440|LOC_Os03g32440|transcript|LOC_Os03g32440.1|protein_coding|3/3|c.*118T>C|||||118|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 ./. 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 ./. 0/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/1 0/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2291 3 18550225 SNP-3.18549006. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32440|LOC_Os03g32440|transcript|LOC_Os03g32440.1|protein_coding|3/3|c.867G>T|p.Gln289His|867/1664|867/966|289/321||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2292 3 18552549 SNP-3.18551330. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32440-LOC_Os03g32450|LOC_Os03g32440-LOC_Os03g32450|intergenic_region|LOC_Os03g32440-LOC_Os03g32450|||n.18552549C>A|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2293 3 18555016 SNP-3.18553797. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32440-LOC_Os03g32450|LOC_Os03g32440-LOC_Os03g32450|intergenic_region|LOC_Os03g32440-LOC_Os03g32450|||n.18555016C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2294 3 18555796 SNP-3.18554577. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32450|LOC_Os03g32450|transcript|LOC_Os03g32450.1|protein_coding|1/1|c.171G>T|p.Val57Val|171/459|171/459|57/152||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2295 3 18556230 SNP-3.18555011. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32450-LOC_Os03g32460|LOC_Os03g32450-LOC_Os03g32460|intergenic_region|LOC_Os03g32450-LOC_Os03g32460|||n.18556230C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2296 3 18558573 SNP-3.18557354. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32450-LOC_Os03g32460|LOC_Os03g32450-LOC_Os03g32460|intergenic_region|LOC_Os03g32450-LOC_Os03g32460|||n.18558573C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2297 3 18558627 SNP-3.18557408. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32450-LOC_Os03g32460|LOC_Os03g32450-LOC_Os03g32460|intergenic_region|LOC_Os03g32450-LOC_Os03g32460|||n.18558627A>G|||||| GT 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2298 3 18559120 SNP-3.18557901. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32450-LOC_Os03g32460|LOC_Os03g32450-LOC_Os03g32460|intergenic_region|LOC_Os03g32450-LOC_Os03g32460|||n.18559120C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2299 3 18559268 SNP-3.18558049. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g32460|LOC_Os03g32460|transcript|LOC_Os03g32460.1|protein_coding|4/4|c.*541G>T|||||541|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2300 3 18561310 SNP-3.18560091. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32460|LOC_Os03g32460|transcript|LOC_Os03g32460.1|protein_coding|1/3|c.20-104G>T|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2301 3 18561974 SNP-3.18560755. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32460-LOC_Os03g32470|LOC_Os03g32460-LOC_Os03g32470|intergenic_region|LOC_Os03g32460-LOC_Os03g32470|||n.18561974C>A|||||| GT 0/0 1/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2302 3 18564453 SNP-3.18563234. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32460-LOC_Os03g32470|LOC_Os03g32460-LOC_Os03g32470|intergenic_region|LOC_Os03g32460-LOC_Os03g32470|||n.18564453C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2303 3 18564499 SNP-3.18563280. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32460-LOC_Os03g32470|LOC_Os03g32460-LOC_Os03g32470|intergenic_region|LOC_Os03g32460-LOC_Os03g32470|||n.18564499C>A|||||| GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2304 3 18568709 SNP-3.18567490. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32460-LOC_Os03g32470|LOC_Os03g32460-LOC_Os03g32470|intergenic_region|LOC_Os03g32460-LOC_Os03g32470|||n.18568709C>A|||||| GT ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2305 3 18574317 SNP-3.18573098. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32480|LOC_Os03g32480|transcript|LOC_Os03g32480.1|protein_coding|4/6|c.1181C>A|p.Arg394Gln|1181/2106|1181/2106|394/701||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2306 3 18574632 SNP-3.18573413. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32480|LOC_Os03g32480|transcript|LOC_Os03g32480.1|protein_coding|4/6|c.1496C>A|p.Ile499Lys|1496/2106|1496/2106|499/701||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 0/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2307 3 18574749 SNP-3.18573530. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32480|LOC_Os03g32480|transcript|LOC_Os03g32480.1|protein_coding|4/6|c.1613A>G|p.Val538Gly|1613/2106|1613/2106|538/701||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2308 3 18575195 SNP-3.18573976. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g32480|LOC_Os03g32480|transcript|LOC_Os03g32480.1|protein_coding|6/6|c.1980A>G|p.Val660Val|1980/2106|1980/2106|660/701||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2309 3 18578550 SNP-3.18577331. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32490-LOC_Os03g32499|LOC_Os03g32490-LOC_Os03g32499|intergenic_region|LOC_Os03g32490-LOC_Os03g32499|||n.18578550A>G|||||| GT 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/1 0/0 ./. ./. ./. ./. ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/1 ./. 0/0 ./. ./. 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 ./. 0/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2310 3 18578564 SNP-3.18577345. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32490-LOC_Os03g32499|LOC_Os03g32490-LOC_Os03g32499|intergenic_region|LOC_Os03g32490-LOC_Os03g32499|||n.18578564A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2311 3 18578743 SNP-3.18577524. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32490-LOC_Os03g32499|LOC_Os03g32490-LOC_Os03g32499|intergenic_region|LOC_Os03g32490-LOC_Os03g32499|||n.18578743A>G|||||| GT 1/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2312 3 18580725 SNP-3.18579506. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32499|LOC_Os03g32499|transcript|LOC_Os03g32499.1|protein_coding|2/2|c.114+619C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/1 ./. 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2313 3 18615582 SNP-3.18614363. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32540-LOC_Os03g32550|LOC_Os03g32540-LOC_Os03g32550|intergenic_region|LOC_Os03g32540-LOC_Os03g32550|||n.18615582A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2314 3 18617626 SNP-3.18616407. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32550|LOC_Os03g32550|transcript|LOC_Os03g32550.1|protein_coding|2/2|c.1673C>A|p.His558His|1673/1977|1673/1977|558/658||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2315 3 18617856 SNP-3.18616637. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32550|LOC_Os03g32550|transcript|LOC_Os03g32550.1|protein_coding|2/2|c.1903C>A|p.Cys635Ser|1903/1977|1903/1977|635/658||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2316 3 18618966 SNP-3.18617747. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32560|LOC_Os03g32560|transcript|LOC_Os03g32560.1|protein_coding|4/4|c.1804-14G>T|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/1 0/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/1 0/1 1/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2317 3 18618983 SNP-3.18617764. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32560|LOC_Os03g32560|transcript|LOC_Os03g32560.1|protein_coding|4/4|c.1804-31T>C|||||| GT ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/1 0/1 0/1 0/0 ./. 0/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/1 0/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2318 3 18620936 SNP-3.18619717. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32560|LOC_Os03g32560|transcript|LOC_Os03g32560.1|protein_coding|2/4|c.283+42T>C|||||| GT ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2319 3 18621127 SNP-3.18619908. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32560|LOC_Os03g32560|transcript|LOC_Os03g32560.1|protein_coding|2/5|c.134T>C|p.Val45Ala|134/2241|134/2241|45/746|| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2320 3 18622401 SNP-3.18621182. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32560-LOC_Os03g32570|LOC_Os03g32560-LOC_Os03g32570|intergenic_region|LOC_Os03g32560-LOC_Os03g32570|||n.18622401C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2321 3 18623735 SNP-3.18622516. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32560-LOC_Os03g32570|LOC_Os03g32560-LOC_Os03g32570|intergenic_region|LOC_Os03g32560-LOC_Os03g32570|||n.18623735A>G|||||| GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2322 3 18625404 SNP-3.18624185. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32570-LOC_Os03g32580|LOC_Os03g32570-LOC_Os03g32580|intergenic_region|LOC_Os03g32570-LOC_Os03g32580|||n.18625404A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2323 3 18625780 SNP-3.18624561. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32570-LOC_Os03g32580|LOC_Os03g32570-LOC_Os03g32580|intergenic_region|LOC_Os03g32570-LOC_Os03g32580|||n.18625780A>G|||||| GT 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/1 1/1 ./. ./. 0/1 0/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2324 3 18625896 SNP-3.18624677. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32570-LOC_Os03g32580|LOC_Os03g32570-LOC_Os03g32580|intergenic_region|LOC_Os03g32570-LOC_Os03g32580|||n.18625896C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2325 3 18626554 SNP-3.18625335. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32570-LOC_Os03g32580|LOC_Os03g32570-LOC_Os03g32580|intergenic_region|LOC_Os03g32570-LOC_Os03g32580|||n.18626554C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 0/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2326 3 18627874 SNP-3.18626655. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32570-LOC_Os03g32580|LOC_Os03g32570-LOC_Os03g32580|intergenic_region|LOC_Os03g32570-LOC_Os03g32580|||n.18627874C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2327 3 18628603 SNP-3.18627384. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32570-LOC_Os03g32580|LOC_Os03g32570-LOC_Os03g32580|intergenic_region|LOC_Os03g32570-LOC_Os03g32580|||n.18628603C>A|||||| GT 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2328 3 18629060 SNP-3.18627841. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32570-LOC_Os03g32580|LOC_Os03g32570-LOC_Os03g32580|intergenic_region|LOC_Os03g32570-LOC_Os03g32580|||n.18629060C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2329 3 18632563 SNP-3.18631344. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32570-LOC_Os03g32580|LOC_Os03g32570-LOC_Os03g32580|intergenic_region|LOC_Os03g32570-LOC_Os03g32580|||n.18632563C>A|||||| GT ./. 1/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2330 3 18634358 SNP-3.18633139. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32570-LOC_Os03g32580|LOC_Os03g32570-LOC_Os03g32580|intergenic_region|LOC_Os03g32570-LOC_Os03g32580|||n.18634358A>G|||||| GT 0/0 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2331 3 18640611 SNP-3.18639392. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32590|LOC_Os03g32590|transcript|LOC_Os03g32590.1|protein_coding|9/14|c.1745-28G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g32590|LOC_Os03g32590|transcript|LOC_Os03g32590.2|protein_coding|9/11|c.1745-28G>T|||||| GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2332 3 18645295 SNP-3.18644076. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32590|LOC_Os03g32590|transcript|LOC_Os03g32590.1|protein_coding|2/14|c.167-904T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g32590|LOC_Os03g32590|transcript|LOC_Os03g32590.2|protein_coding|2/11|c.167-904T>C|||||| GT 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2333 3 18648463 SNP-3.18647244. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32590-LOC_Os03g32600|LOC_Os03g32590-LOC_Os03g32600|intergenic_region|LOC_Os03g32590-LOC_Os03g32600|||n.18648463A>G|||||| GT 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2334 3 18649030 SNP-3.18647811. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32590-LOC_Os03g32600|LOC_Os03g32590-LOC_Os03g32600|intergenic_region|LOC_Os03g32590-LOC_Os03g32600|||n.18649030C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2335 3 18655483 SNP-3.18654264. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32600|LOC_Os03g32600|transcript|LOC_Os03g32600.1|protein_coding|5/5|c.2422+370G>T|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2336 3 18655739 SNP-3.18654520. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32600|LOC_Os03g32600|transcript|LOC_Os03g32600.1|protein_coding|5/5|c.2422+114T>C|||||| GT 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2337 3 18658396 SNP-3.18657177. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32600|LOC_Os03g32600|transcript|LOC_Os03g32600.1|protein_coding|2/5|c.1675-75T>C|||||| GT ./. ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2338 3 18659416 SNP-3.18658197. A G . . PR;ANN=G|splice_region_variant&intron_variant|LOW|LOC_Os03g32600|LOC_Os03g32600|transcript|LOC_Os03g32600.1|protein_coding|1/5|c.899+6T>C|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2339 3 18662162 SNP-3.18660943. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32600-LOC_Os03g32610|LOC_Os03g32600-LOC_Os03g32610|intergenic_region|LOC_Os03g32600-LOC_Os03g32610|||n.18662162C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2340 3 18662402 SNP-3.18661183. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32600-LOC_Os03g32610|LOC_Os03g32600-LOC_Os03g32610|intergenic_region|LOC_Os03g32600-LOC_Os03g32610|||n.18662402A>G|||||| GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2341 3 18664428 SNP-3.18663209. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32610-LOC_Os03g32620|LOC_Os03g32610-LOC_Os03g32620|intergenic_region|LOC_Os03g32610-LOC_Os03g32620|||n.18664428A>G|||||| GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2342 3 18667112 SNP-3.18665893. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32610-LOC_Os03g32620|LOC_Os03g32610-LOC_Os03g32620|intergenic_region|LOC_Os03g32610-LOC_Os03g32620|||n.18667112C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2343 3 18667892 SNP-3.18666673. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32610-LOC_Os03g32620|LOC_Os03g32610-LOC_Os03g32620|intergenic_region|LOC_Os03g32610-LOC_Os03g32620|||n.18667892A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2344 3 18668534 SNP-3.18667315. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32610-LOC_Os03g32620|LOC_Os03g32610-LOC_Os03g32620|intergenic_region|LOC_Os03g32610-LOC_Os03g32620|||n.18668534C>A|||||| GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2345 3 18672293 SNP-3.18671074. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32610-LOC_Os03g32620|LOC_Os03g32610-LOC_Os03g32620|intergenic_region|LOC_Os03g32610-LOC_Os03g32620|||n.18672293C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2346 3 18672970 SNP-3.18671751. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32610-LOC_Os03g32620|LOC_Os03g32610-LOC_Os03g32620|intergenic_region|LOC_Os03g32610-LOC_Os03g32620|||n.18672970C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2347 3 18673545 SNP-3.18672326. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32610-LOC_Os03g32620|LOC_Os03g32610-LOC_Os03g32620|intergenic_region|LOC_Os03g32610-LOC_Os03g32620|||n.18673545A>G|||||| GT 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2348 3 18675080 SNP-3.18673861. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32610-LOC_Os03g32620|LOC_Os03g32610-LOC_Os03g32620|intergenic_region|LOC_Os03g32610-LOC_Os03g32620|||n.18675080C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2349 3 18675738 SNP-3.18674519. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32610-LOC_Os03g32620|LOC_Os03g32610-LOC_Os03g32620|intergenic_region|LOC_Os03g32610-LOC_Os03g32620|||n.18675738C>A|||||| GT 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2350 3 18681590 SNP-3.18680349. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32620|LOC_Os03g32620|transcript|LOC_Os03g32620.1|protein_coding|1/3|c.848T>C|p.Lys283Thr|1255/4010|848/2514|283/837||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2351 3 18683390 SNP-3.18682149. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32620-LOC_Os03g32630|LOC_Os03g32620-LOC_Os03g32630|intergenic_region|LOC_Os03g32620-LOC_Os03g32630|||n.18683390C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/1 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2352 3 18683411 SNP-3.18682170. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32620-LOC_Os03g32630|LOC_Os03g32620-LOC_Os03g32630|intergenic_region|LOC_Os03g32620-LOC_Os03g32630|||n.18683411C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2353 3 18687173 SNP-3.18685932. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32630|LOC_Os03g32630|transcript|LOC_Os03g32630.1|protein_coding|1/1|c.2129G>T|p.Glu710Val|2216/2495|2129/2133|710/710||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2354 3 18687536 SNP-3.18686295. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32630|LOC_Os03g32630|transcript|LOC_Os03g32630.1|protein_coding|1/1|c.1766T>C|p.Lys589Thr|1853/2495|1766/2133|589/710||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2355 3 18688918 SNP-3.18687677. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32630|LOC_Os03g32630|transcript|LOC_Os03g32630.1|protein_coding|1/1|c.384G>T|p.Ala128Ala|471/2495|384/2133|128/710||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2356 3 18691370 SNP-3.18690129. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32636|LOC_Os03g32636|transcript|LOC_Os03g32636.1|protein_coding|1/1|c.75+241C>A|||||| GT 0/0 1/1 ./. 1/1 0/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/0 ./. 0/1 1/1 ./. 0/0 1/1 0/0 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 ./. ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 ./. 0/1 1/1 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/1 0/0 ./. 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2357 3 18691782 SNP-3.18690541. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32636|LOC_Os03g32636|transcript|LOC_Os03g32636.1|protein_coding|1/1|c.76-224A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2358 3 18691986 SNP-3.18690745. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32636|LOC_Os03g32636|transcript|LOC_Os03g32636.1|protein_coding|1/1|c.76-20C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2359 3 18692796 SNP-3.18691555. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32636-LOC_Os03g32642|LOC_Os03g32636-LOC_Os03g32642|intergenic_region|LOC_Os03g32636-LOC_Os03g32642|||n.18692796C>A|||||| GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2360 3 18693936 SNP-3.18692695. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32636-LOC_Os03g32642|LOC_Os03g32636-LOC_Os03g32642|intergenic_region|LOC_Os03g32636-LOC_Os03g32642|||n.18693936C>A|||||| GT 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 1/1 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2361 3 18694773 SNP-3.18693532. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32642|LOC_Os03g32642|transcript|LOC_Os03g32642.1|protein_coding|1/1|c.109-13G>T|||||| GT ./. 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2362 3 18695016 SNP-3.18693775. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32642-LOC_Os03g32650|LOC_Os03g32642-LOC_Os03g32650|intergenic_region|LOC_Os03g32642-LOC_Os03g32650|||n.18695016A>G|||||| GT 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2363 3 18697802 SNP-3.18696561. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32642-LOC_Os03g32650|LOC_Os03g32642-LOC_Os03g32650|intergenic_region|LOC_Os03g32642-LOC_Os03g32650|||n.18697802A>G|||||| GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 0/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2364 3 18697909 SNP-3.18696668. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32642-LOC_Os03g32650|LOC_Os03g32642-LOC_Os03g32650|intergenic_region|LOC_Os03g32642-LOC_Os03g32650|||n.18697909C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2365 3 18707780 SNP-3.18706539. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32660-LOC_Os03g32664|LOC_Os03g32660-LOC_Os03g32664|intergenic_region|LOC_Os03g32660-LOC_Os03g32664|||n.18707780C>A|||||| GT ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/1 ./. 0/1 ./. ./. 0/0 1/1 1/1 ./. 0/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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2366 3 18710665 SNP-3.18709424. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32664|LOC_Os03g32664|transcript|LOC_Os03g32664.1|protein_coding|1/1|c.134G>T|p.Thr45Ile|134/351|134/351|45/116||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/1 ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2367 3 18712119 SNP-3.18710878. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32670|LOC_Os03g32670|transcript|LOC_Os03g32670.1|protein_coding|1/1|c.125C>A|p.Gln42Gln|125/297|125/297|42/98||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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2368 3 18714288 SNP-3.18713047. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32670-LOC_Os03g32690|LOC_Os03g32670-LOC_Os03g32690|intergenic_region|LOC_Os03g32670-LOC_Os03g32690|||n.18714288C>A|||||| GT 0/0 0/0 0/0 1/1 0/1 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 ./. 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 |
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2369 3 18716479 SNP-3.18715238. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32670-LOC_Os03g32690|LOC_Os03g32670-LOC_Os03g32690|intergenic_region|LOC_Os03g32670-LOC_Os03g32690|||n.18716479C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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2370 3 18718548 SNP-3.18717307. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32670-LOC_Os03g32690|LOC_Os03g32670-LOC_Os03g32690|intergenic_region|LOC_Os03g32670-LOC_Os03g32690|||n.18718548A>G|||||| GT ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2371 3 18721636 SNP-3.18720395. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32670-LOC_Os03g32690|LOC_Os03g32670-LOC_Os03g32690|intergenic_region|LOC_Os03g32670-LOC_Os03g32690|||n.18721636A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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2372 3 18722594 SNP-3.18721353. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32670-LOC_Os03g32690|LOC_Os03g32670-LOC_Os03g32690|intergenic_region|LOC_Os03g32670-LOC_Os03g32690|||n.18722594A>G|||||| GT 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2373 3 18728215 SNP-3.18726974. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32670-LOC_Os03g32690|LOC_Os03g32670-LOC_Os03g32690|intergenic_region|LOC_Os03g32670-LOC_Os03g32690|||n.18728215C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2374 3 18729426 SNP-3.18728185. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32670-LOC_Os03g32690|LOC_Os03g32670-LOC_Os03g32690|intergenic_region|LOC_Os03g32670-LOC_Os03g32690|||n.18729426A>G|||||| GT ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2375 3 18730511 SNP-3.18729270. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32670-LOC_Os03g32690|LOC_Os03g32670-LOC_Os03g32690|intergenic_region|LOC_Os03g32670-LOC_Os03g32690|||n.18730511A>G|||||| GT 1/1 0/0 0/1 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/1 ./. 1/1 1/1 ./. ./. ./. 0/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 |
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2376 3 18732079 SNP-3.18730838. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32690|LOC_Os03g32690|transcript|LOC_Os03g32690.1|protein_coding|2/4|c.872C>A|p.Phe291Tyr|872/1965|872/1965|291/654||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2377 3 18733051 SNP-3.18731810. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32690|LOC_Os03g32690|transcript|LOC_Os03g32690.1|protein_coding|4/4|c.1632C>A|p.Thr544Thr|1632/1965|1632/1965|544/654|| GT 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2378 3 18733512 SNP-3.18732271. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32690-LOC_Os03g32700|LOC_Os03g32690-LOC_Os03g32700|intergenic_region|LOC_Os03g32690-LOC_Os03g32700|||n.18733512C>A|||||| GT 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/1 ./. ./. 0/0 1/1 0/0 0/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2379 3 18734715 SNP-3.18733474. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32690-LOC_Os03g32700|LOC_Os03g32690-LOC_Os03g32700|intergenic_region|LOC_Os03g32690-LOC_Os03g32700|||n.18734715A>G|||||| GT 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2380 3 18739438 SNP-3.18738197. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32700-LOC_Os03g32720|LOC_Os03g32700-LOC_Os03g32720|intergenic_region|LOC_Os03g32700-LOC_Os03g32720|||n.18739438A>G|||||| GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2381 3 18745988 SNP-3.18744747. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32720-LOC_Os03g32730|LOC_Os03g32720-LOC_Os03g32730|intergenic_region|LOC_Os03g32720-LOC_Os03g32730|||n.18745988C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2382 3 18747914 SNP-3.18746673. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32720-LOC_Os03g32730|LOC_Os03g32720-LOC_Os03g32730|intergenic_region|LOC_Os03g32720-LOC_Os03g32730|||n.18747914C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2383 3 18749265 SNP-3.18748024. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32730|LOC_Os03g32730|transcript|LOC_Os03g32730.1|protein_coding|3/3|c.785T>C|p.Trp262Ser|785/1191|785/1191|262/396||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/1 1/1 ./. 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2384 3 18749284 SNP-3.18748043. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g32730|LOC_Os03g32730|transcript|LOC_Os03g32730.1|protein_coding|3/3|c.766G>T|p.Lys256*|766/1191|766/1191|256/396||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2385 3 18749395 SNP-3.18748154. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32730|LOC_Os03g32730|transcript|LOC_Os03g32730.1|protein_coding|3/3|c.655T>C|p.Ala219Pro|655/1191|655/1191|219/396||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/1 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 0/0 0/1 1/1 ./. ./. 1/1 ./. 0/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2386 3 18749735 SNP-3.18748494. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32730|LOC_Os03g32730|transcript|LOC_Os03g32730.1|protein_coding|2/3|c.414G>T|p.Pro138Pro|414/1191|414/1191|138/396|| GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2387 3 18750724 SNP-3.18749483. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32730-LOC_Os03g32749|LOC_Os03g32730-LOC_Os03g32749|intergenic_region|LOC_Os03g32730-LOC_Os03g32749|||n.18750724C>A|||||| GT ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2388 3 18751362 SNP-3.18750121. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32749|LOC_Os03g32749|transcript|LOC_Os03g32749.1|protein_coding|6/6|c.1777G>T|p.Arg593Trp|1777/2217|1777/2217|593/738||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2389 3 18751506 SNP-3.18750265. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32749|LOC_Os03g32749|transcript|LOC_Os03g32749.1|protein_coding|6/6|c.1633G>T|p.Arg545Cys|1633/2217|1633/2217|545/738||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2390 3 18753459 SNP-3.18752218. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32749|LOC_Os03g32749|transcript|LOC_Os03g32749.1|protein_coding|2/5|c.463-349G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2391 3 18753953 SNP-3.18752712. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32749|LOC_Os03g32749|transcript|LOC_Os03g32749.1|protein_coding|2/5|c.462+190G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2392 3 18754343 SNP-3.18753102. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32749|LOC_Os03g32749|transcript|LOC_Os03g32749.1|protein_coding|1/5|c.373-111G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2393 3 18755603 SNP-3.18754362. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32749|LOC_Os03g32749|transcript|LOC_Os03g32749.1|protein_coding|1/6|c.251G>T|p.Ile84Ile|251/2217|251/2217|84/738||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2394 3 18758727 SNP-3.18757486. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32770|LOC_Os03g32770|transcript|LOC_Os03g32770.1|protein_coding|1/2|c.157-390C>A|||||| GT ./. 1/1 0/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2395 3 18759891 SNP-3.18758650. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32770|LOC_Os03g32770|transcript|LOC_Os03g32770.1|protein_coding|3/3|c.880C>A|p.Thr294Thr|880/1431|880/1431|294/476||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2396 3 18761242 SNP-3.18760001. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32770-LOC_Os03g32780|LOC_Os03g32770-LOC_Os03g32780|intergenic_region|LOC_Os03g32770-LOC_Os03g32780|||n.18761242C>A|||||| GT ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2397 3 18761440 SNP-3.18760199. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32770-LOC_Os03g32780|LOC_Os03g32770-LOC_Os03g32780|intergenic_region|LOC_Os03g32770-LOC_Os03g32780|||n.18761440A>G|||||| GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/1 ./. ./. 0/0 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 0/1 1/1 ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2398 3 18767602 SNP-3.18766361. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32780-LOC_Os03g32790|LOC_Os03g32780-LOC_Os03g32790|intergenic_region|LOC_Os03g32780-LOC_Os03g32790|||n.18767602C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2399 3 18767876 SNP-3.18766635. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32780-LOC_Os03g32790|LOC_Os03g32780-LOC_Os03g32790|intergenic_region|LOC_Os03g32780-LOC_Os03g32790|||n.18767876C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2400 3 18770394 SNP-3.18769153. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g32790|LOC_Os03g32790|transcript|LOC_Os03g32790.1|protein_coding|2/2|c.*209A>G|||||209|WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g32790|LOC_Os03g32790|transcript|LOC_Os03g32790.2|protein_coding|3/3|c.*209A>G|||||209|WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g32790|LOC_Os03g32790|transcript|LOC_Os03g32790.3|protein_coding|2/2|c.*209A>G|||||209|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/1 ./. 0/1 1/1 0/0 ./. ./. ./. 1/1 0/1 1/1 0/1 0/1 ./. ./. 0/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/1 1/1 ./. 1/1 ./. 0/1 0/0 ./. 0/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/1 ./. 0/1 ./. 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 ./. 1/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/1 ./. ./. ./. 0/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2401 3 18770657 SNP-3.18769416. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32790-LOC_Os03g32810|LOC_Os03g32790-LOC_Os03g32810|intergenic_region|LOC_Os03g32790-LOC_Os03g32810|||n.18770657C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2402 3 18770748 SNP-3.18769507. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32790-LOC_Os03g32810|LOC_Os03g32790-LOC_Os03g32810|intergenic_region|LOC_Os03g32790-LOC_Os03g32810|||n.18770748C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2403 3 18771856 SNP-3.18770615. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32790-LOC_Os03g32810|LOC_Os03g32790-LOC_Os03g32810|intergenic_region|LOC_Os03g32790-LOC_Os03g32810|||n.18771856C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2404 3 18772680 SNP-3.18771439. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32790-LOC_Os03g32810|LOC_Os03g32790-LOC_Os03g32810|intergenic_region|LOC_Os03g32790-LOC_Os03g32810|||n.18772680A>G|||||| GT 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2405 3 18773308 SNP-3.18772067. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32790-LOC_Os03g32810|LOC_Os03g32790-LOC_Os03g32810|intergenic_region|LOC_Os03g32790-LOC_Os03g32810|||n.18773308A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2406 3 18774925 SNP-3.18773684. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32790-LOC_Os03g32810|LOC_Os03g32790-LOC_Os03g32810|intergenic_region|LOC_Os03g32790-LOC_Os03g32810|||n.18774925C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2407 3 18775732 SNP-3.18774491. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32810|LOC_Os03g32810|transcript|LOC_Os03g32810.1|protein_coding|1/1|c.75C>A|p.Leu25Leu|75/489|75/489|25/162||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2408 3 18775875 SNP-3.18774634. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32810|LOC_Os03g32810|transcript|LOC_Os03g32810.1|protein_coding|1/1|c.218C>A|p.Leu73Gln|218/489|218/489|73/162||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2409 3 18776754 SNP-3.18775513. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32810-LOC_Os03g32820|LOC_Os03g32810-LOC_Os03g32820|intergenic_region|LOC_Os03g32810-LOC_Os03g32820|||n.18776754A>G|||||| GT 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/1 ./. 0/1 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/1 ./. ./. ./. 1/1 1/1 0/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2410 3 18779415 SNP-3.18778174. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32820|LOC_Os03g32820|transcript|LOC_Os03g32820.1|protein_coding|2/2|c.282C>A|p.Ser94Ser|282/828|282/828|94/275||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/1 1/1 1/1 0/1 0/1 1/1 0/0 ./. 1/1 1/1 0/1 0/1 0/1 1/1 0/1 0/0 ./. 1/1 1/1 0/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/1 0/0 0/1 0/0 0/1 ./. ./. 1/1 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2411 3 18779525 SNP-3.18778284. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g32820|LOC_Os03g32820|transcript|LOC_Os03g32820.1|protein_coding|2/2|c.392A>G|p.Trp131Trp|392/828|392/828|131/275||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2412 3 18779961 SNP-3.18778720. A G . . PR;ANN=G|splice_region_variant&stop_retained_variant|LOW|LOC_Os03g32820|LOC_Os03g32820|transcript|LOC_Os03g32820.1|protein_coding|2/2|c.828A>G|p.Ter276Ter|828/828|828/828|276/275||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. ./. 0/0 0/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 0/0 0/0 ./. ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/1 0/0 1/1 0/0 ./. 0/1 0/1 0/1 ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/1 ./. 0/0 1/1 1/1 0/0 0/1 1/1 ./. 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2413 3 18784095 SNP-3.18782854. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32830|LOC_Os03g32830|transcript|LOC_Os03g32830.1|protein_coding|1/2|c.186T>C|p.Leu62Phe|186/318|186/318|62/105||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2414 3 18785749 SNP-3.18784508. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32830-LOC_Os03g32840|LOC_Os03g32830-LOC_Os03g32840|intergenic_region|LOC_Os03g32830-LOC_Os03g32840|||n.18785749A>G|||||| GT 1/1 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 ./. 0/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2415 3 18786421 SNP-3.18785180. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g32840|LOC_Os03g32840|transcript|LOC_Os03g32840.1|protein_coding|1/1|c.345A>G|p.Thr115Thr|345/468|345/468|115/155||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2416 3 18787780 SNP-3.18786539. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32840-LOC_Os03g32850|LOC_Os03g32840-LOC_Os03g32850|intergenic_region|LOC_Os03g32840-LOC_Os03g32850|||n.18787780A>G|||||| GT 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2417 3 18788889 SNP-3.18787648. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32840-LOC_Os03g32850|LOC_Os03g32840-LOC_Os03g32850|intergenic_region|LOC_Os03g32840-LOC_Os03g32850|||n.18788889A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2418 3 18789275 SNP-3.18788034. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32840-LOC_Os03g32850|LOC_Os03g32840-LOC_Os03g32850|intergenic_region|LOC_Os03g32840-LOC_Os03g32850|||n.18789275C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2419 3 18791188 SNP-3.18789947. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32850|LOC_Os03g32850|transcript|LOC_Os03g32850.1|protein_coding|1/6|c.121-130A>G|||||| GT 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2420 3 18791989 SNP-3.18790748. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32850|LOC_Os03g32850|transcript|LOC_Os03g32850.1|protein_coding|2/7|c.792C>A|p.Asp264Glu|792/2430|792/2430|264/809|| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2421 3 18792338 SNP-3.18791097. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32850|LOC_Os03g32850|transcript|LOC_Os03g32850.1|protein_coding|3/7|c.1099C>A|p.Val367Ile|1099/2430|1099/2430|367/809||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2422 3 18792424 SNP-3.18791183. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32850|LOC_Os03g32850|transcript|LOC_Os03g32850.1|protein_coding|3/7|c.1185C>A|p.Ser395Ser|1185/2430|1185/2430|395/809||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2423 3 18792649 SNP-3.18791408. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32850|LOC_Os03g32850|transcript|LOC_Os03g32850.1|protein_coding|3/7|c.1410C>A|p.Leu470Leu|1410/2430|1410/2430|470/809|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 ./. 0/0 ./. 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2424 3 18792735 SNP-3.18791494. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g32850|LOC_Os03g32850|transcript|LOC_Os03g32850.1|protein_coding|3/7|c.1496A>G|p.Pro499Arg|1496/2430|1496/2430|499/809||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2425 3 18792809 SNP-3.18791568. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32850|LOC_Os03g32850|transcript|LOC_Os03g32850.1|protein_coding|3/7|c.1570C>A|p.Val524Ile|1570/2430|1570/2430|524/809||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2426 3 18793195 SNP-3.18791954. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32850|LOC_Os03g32850|transcript|LOC_Os03g32850.1|protein_coding|5/7|c.1818C>A|p.Lys606Lys|1818/2430|1818/2430|606/809||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2427 3 18793546 SNP-3.18792305. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32850|LOC_Os03g32850|transcript|LOC_Os03g32850.1|protein_coding|5/7|c.2169C>A|p.His723Gln|2169/2430|2169/2430|723/809|| GT 0/0 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2428 3 18798137 SNP-3.18796896. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32850-LOC_Os03g32860|LOC_Os03g32850-LOC_Os03g32860|intergenic_region|LOC_Os03g32850-LOC_Os03g32860|||n.18798137C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 0/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2429 3 18798764 SNP-3.18797523. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32850-LOC_Os03g32860|LOC_Os03g32850-LOC_Os03g32860|intergenic_region|LOC_Os03g32850-LOC_Os03g32860|||n.18798764C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 ./. ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2430 3 18802486 SNP-3.18801245. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32860|LOC_Os03g32860|transcript|LOC_Os03g32860.1|protein_coding|2/3|c.463-240T>C|||||| GT ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2431 3 18805281 SNP-3.18804040. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g32870|LOC_Os03g32870|transcript|LOC_Os03g32870.1|protein_coding|1/2|c.56T>C|p.Pro19Pro|56/1110|56/1110|19/369||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2432 3 18805487 SNP-3.18804246. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32870-LOC_Os03g32880|LOC_Os03g32870-LOC_Os03g32880|intergenic_region|LOC_Os03g32870-LOC_Os03g32880|||n.18805487A>G|||||| GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2433 3 18807288 SNP-3.18806047. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32880|LOC_Os03g32880|transcript|LOC_Os03g32880.1|protein_coding|1/1|c.91+214C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2434 3 18808258 SNP-3.18807017. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32880|LOC_Os03g32880|transcript|LOC_Os03g32880.1|protein_coding|2/2|c.403C>A|p.Phe135Ile|403/474|403/474|135/157||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2435 3 18808464 SNP-3.18807223. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32880-LOC_Os03g32890|LOC_Os03g32880-LOC_Os03g32890|intergenic_region|LOC_Os03g32880-LOC_Os03g32890|||n.18808464C>A|||||| GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 ./. ./. 0/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2436 3 18808696 SNP-3.18807455. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32880-LOC_Os03g32890|LOC_Os03g32880-LOC_Os03g32890|intergenic_region|LOC_Os03g32880-LOC_Os03g32890|||n.18808696A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2437 3 18809082 SNP-3.18807841. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32880-LOC_Os03g32890|LOC_Os03g32880-LOC_Os03g32890|intergenic_region|LOC_Os03g32880-LOC_Os03g32890|||n.18809082A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2438 3 18812689 SNP-3.18811448. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g32890|LOC_Os03g32890|transcript|LOC_Os03g32890.1|protein_coding|1/2|c.164-18G>T|||||| GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2439 3 18813873 SNP-3.18812632. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32890-LOC_Os03g32900|LOC_Os03g32890-LOC_Os03g32900|intergenic_region|LOC_Os03g32890-LOC_Os03g32900|||n.18813873A>G|||||| GT 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 0/1 1/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2440 3 18815144 SNP-3.18813903. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32890-LOC_Os03g32900|LOC_Os03g32890-LOC_Os03g32900|intergenic_region|LOC_Os03g32890-LOC_Os03g32900|||n.18815144A>G|||||| GT ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2441 3 18817425 SNP-3.18816184. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32900-LOC_Os03g32910|LOC_Os03g32900-LOC_Os03g32910|intergenic_region|LOC_Os03g32900-LOC_Os03g32910|||n.18817425A>G|||||| GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2442 3 18826402 SNP-3.18825161. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32920|LOC_Os03g32920|transcript|LOC_Os03g32920.1|protein_coding|1/1|c.221-268T>C|||||| GT 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2443 3 18828845 SNP-3.18827604. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32930|LOC_Os03g32930|transcript|LOC_Os03g32930.1|protein_coding|4/6|c.1207G>T|p.Thr403Ser|1207/2139|1207/2139|403/712||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/1 ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2444 3 18829038 SNP-3.18827797. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g32930|LOC_Os03g32930|transcript|LOC_Os03g32930.1|protein_coding|4/6|c.1014G>T|p.Leu338Leu|1014/2139|1014/2139|338/712||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2445 3 18834871 SNP-3.18833630. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g32940|LOC_Os03g32940|transcript|LOC_Os03g32940.1|protein_coding|3/5|c.718G>T|p.Ser240Cys|718/1761|718/1761|240/586||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2446 3 18834928 SNP-3.18833687. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g32940|LOC_Os03g32940|transcript|LOC_Os03g32940.1|protein_coding|3/5|c.661T>C|p.Gln221Gln|661/1761|661/1761|221/586||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2447 3 18835579 SNP-3.18834338. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g32940|LOC_Os03g32940|transcript|LOC_Os03g32940.1|protein_coding|1/4|c.354-204T>C|||||| GT 1/1 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/1 ./. ./. ./. ./. 0/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/1 ./. ./. ./. ./. ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 ./. 0/0 0/1 ./. 0/1 ./. ./. 1/1 0/1 ./. 0/0 1/1 ./. 0/1 0/0 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2448 3 18852669 SNP-3.18851428. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g32970|LOC_Os03g32970|transcript|LOC_Os03g32970.1|protein_coding|2/2|c.1188A>G|p.Gly396Gly|1188/1206|1188/1206|396/401|| GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2449 3 18855626 SNP-3.18854385. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g32970-LOC_Os03g32980|LOC_Os03g32970-LOC_Os03g32980|intergenic_region|LOC_Os03g32970-LOC_Os03g32980|||n.18855626C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2450 3 18863952 SNP-3.18862711. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g32990-LOC_Os03g33000|LOC_Os03g32990-LOC_Os03g33000|intergenic_region|LOC_Os03g32990-LOC_Os03g33000|||n.18863952A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2451 3 18865056 SNP-3.18863815. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33000|LOC_Os03g33000|transcript|LOC_Os03g33000.1|protein_coding|1/1|c.205+739C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2452 3 18865076 SNP-3.18863835. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33000|LOC_Os03g33000|transcript|LOC_Os03g33000.1|protein_coding|1/1|c.205+759A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2453 3 18865095 SNP-3.18863854. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33000|LOC_Os03g33000|transcript|LOC_Os03g33000.1|protein_coding|1/1|c.205+778A>G|||||| GT 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 0/1 0/1 0/1 ./. 0/0 1/1 ./. 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2454 3 18865748 SNP-3.18864507. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33000|LOC_Os03g33000|transcript|LOC_Os03g33000.1|protein_coding|1/1|c.206-189C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2455 3 18866029 SNP-3.18864788. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33000|LOC_Os03g33000|transcript|LOC_Os03g33000.1|protein_coding|2/2|c.298C>A|p.Ser100Ser|298/645|298/645|100/214||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2456 3 18866047 SNP-3.18864806. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33000|LOC_Os03g33000|transcript|LOC_Os03g33000.1|protein_coding|2/2|c.316C>A|p.Gly106Ser|316/645|316/645|106/214||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 0/1 0/1 0/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2457 3 18866067 SNP-3.18864826. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33000|LOC_Os03g33000|transcript|LOC_Os03g33000.1|protein_coding|2/2|c.336C>A|p.Thr112Thr|336/645|336/645|112/214||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2458 3 18866089 SNP-3.18864848. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33000|LOC_Os03g33000|transcript|LOC_Os03g33000.1|protein_coding|2/2|c.358C>A|p.Thr120Thr|358/645|358/645|120/214||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2459 3 18866323 SNP-3.18865082. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33000|LOC_Os03g33000|transcript|LOC_Os03g33000.1|protein_coding|2/2|c.592C>A|p.Arg198Ser|592/645|592/645|198/214|| GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2460 3 18868242 SNP-3.18867001. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18868242C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2461 3 18868282 SNP-3.18867041. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18868282A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2462 3 18868406 SNP-3.18867165. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18868406C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2463 3 18869491 SNP-3.18868250. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18869491C>A|||||| GT ./. 1/1 1/1 0/1 0/0 0/1 0/0 ./. 1/1 0/1 0/1 ./. 0/1 0/0 ./. ./. ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/1 0/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2464 3 18869854 SNP-3.18868613. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18869854C>A|||||| GT 0/0 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/0 ./. 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2465 3 18869855 SNP-3.18868614. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18869855C>A|||||| GT 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 ./. 0/0 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 ./. ./. 0/0 ./. 0/0 0/1 0/1 0/0 ./. 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2466 3 18870770 SNP-3.18869529. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18870770C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2467 3 18870916 SNP-3.18869675. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18870916C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2468 3 18870952 SNP-3.18869711. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18870952C>A|||||| GT 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2469 3 18871142 SNP-3.18869901. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18871142C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2470 3 18872231 SNP-3.18870990at. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18872231A>G|||||| GT 0/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2471 3 18872231 SNP-3.18870990ac. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33000-LOC_Os03g33010|LOC_Os03g33000-LOC_Os03g33010|intergenic_region|LOC_Os03g33000-LOC_Os03g33010|||n.18872231C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2472 3 18875926 SNP-3.18874685. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33010-LOC_Os03g33012|LOC_Os03g33010-LOC_Os03g33012|intergenic_region|LOC_Os03g33010-LOC_Os03g33012|||n.18875926C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/0 0/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2473 3 18875999 SNP-3.18874758. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33010-LOC_Os03g33012|LOC_Os03g33010-LOC_Os03g33012|intergenic_region|LOC_Os03g33010-LOC_Os03g33012|||n.18875999A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2474 3 18880737 SNP-3.18879496. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33010-LOC_Os03g33012|LOC_Os03g33010-LOC_Os03g33012|intergenic_region|LOC_Os03g33010-LOC_Os03g33012|||n.18880737A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2475 3 18882188 SNP-3.18880947. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33010-LOC_Os03g33012|LOC_Os03g33010-LOC_Os03g33012|intergenic_region|LOC_Os03g33010-LOC_Os03g33012|||n.18882188C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2476 3 18883386 SNP-3.18882145. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33012|LOC_Os03g33012|transcript|LOC_Os03g33012.1|protein_coding|1/3|c.321+595C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2477 3 18884077 SNP-3.18882836. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33012|LOC_Os03g33012|transcript|LOC_Os03g33012.1|protein_coding|1/3|c.321+1286C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2478 3 18884772 SNP-3.18883531. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33012|LOC_Os03g33012|transcript|LOC_Os03g33012.1|protein_coding|1/3|c.321+1981C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2479 3 18887307 SNP-3.18886066. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33012|LOC_Os03g33012|transcript|LOC_Os03g33012.1|protein_coding|1/3|c.322-2108A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2480 3 18889381 SNP-3.18888140. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33012|LOC_Os03g33012|transcript|LOC_Os03g33012.1|protein_coding|1/3|c.322-34C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2481 3 18891889 SNP-3.18890648. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33012|LOC_Os03g33012|transcript|LOC_Os03g33012.1|protein_coding|3/3|c.1161-819C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2482 3 18893246 SNP-3.18892005. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g33012|LOC_Os03g33012|transcript|LOC_Os03g33012.1|protein_coding|4/4|c.*265C>A|||||265|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2483 3 18901067 SNP-3.18899826. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33042|LOC_Os03g33042|transcript|LOC_Os03g33042.1|protein_coding|2/2|c.625C>A|p.Ser209Thr|625/1056|625/1056|209/351||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2484 3 18901541 SNP-3.18900300. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33042-LOC_Os03g33044|LOC_Os03g33042-LOC_Os03g33044|intergenic_region|LOC_Os03g33042-LOC_Os03g33044|||n.18901541C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2485 3 18901857 SNP-3.18900616. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33042-LOC_Os03g33044|LOC_Os03g33042-LOC_Os03g33044|intergenic_region|LOC_Os03g33042-LOC_Os03g33044|||n.18901857C>A|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 ./. 0/0 1/1 1/1 0/1 0/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2486 3 18902596 SNP-3.18901355. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33044|LOC_Os03g33044|transcript|LOC_Os03g33044.1|protein_coding|1/1|c.537A>G|p.Leu179Leu|537/630|537/630|179/209||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2487 3 18919878 SNP-3.18918637. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33060|LOC_Os03g33060|transcript|LOC_Os03g33060.1|protein_coding|2/5|c.378-278G>T|||||| GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2488 3 18921244 SNP-3.18920003. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33060|LOC_Os03g33060|transcript|LOC_Os03g33060.1|protein_coding|1/5|c.207-16G>T|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2489 3 18922800 SNP-3.18921559. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33070|LOC_Os03g33070|transcript|LOC_Os03g33070.1|protein_coding|1/2|c.329G>T|p.Ile110Ile|329/570|329/570|110/189||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 1/1 0/0 1/1 0/1 0/1 0/0 0/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2490 3 18923292 SNP-3.18922051. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33070-LOC_Os03g33074|LOC_Os03g33070-LOC_Os03g33074|intergenic_region|LOC_Os03g33070-LOC_Os03g33074|||n.18923292C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2491 3 18923377 SNP-3.18922136. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33070-LOC_Os03g33074|LOC_Os03g33070-LOC_Os03g33074|intergenic_region|LOC_Os03g33070-LOC_Os03g33074|||n.18923377A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2492 3 18923502 SNP-3.18922261. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33070-LOC_Os03g33074|LOC_Os03g33070-LOC_Os03g33074|intergenic_region|LOC_Os03g33070-LOC_Os03g33074|||n.18923502C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2493 3 18924201 SNP-3.18922960. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33070-LOC_Os03g33074|LOC_Os03g33070-LOC_Os03g33074|intergenic_region|LOC_Os03g33070-LOC_Os03g33074|||n.18924201C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2494 3 18925620 SNP-3.18924379. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33070-LOC_Os03g33074|LOC_Os03g33070-LOC_Os03g33074|intergenic_region|LOC_Os03g33070-LOC_Os03g33074|||n.18925620A>G|||||| GT ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2495 3 18926620 SNP-3.18925379. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33080|LOC_Os03g33080|transcript|LOC_Os03g33080.1|protein_coding|2/2|c.2357G>T|p.Ile786Ile|2357/2460|2357/2460|786/819||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2496 3 18929154 SNP-3.18927913. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33080|LOC_Os03g33080|transcript|LOC_Os03g33080.1|protein_coding|1/2|c.58T>C|p.Val20Leu|58/2460|58/2460|20/819||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2497 3 18929968 SNP-3.18928727. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33080-LOC_Os03g33090|LOC_Os03g33080-LOC_Os03g33090|intergenic_region|LOC_Os03g33080-LOC_Os03g33090|||n.18929968C>A|||||| GT 0/0 1/1 0/0 1/1 ./. 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/1 1/1 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/1 0/1 0/1 ./. 0/1 0/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/1 0/0 1/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/1 ./. 0/1 0/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/1 0/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2498 3 18930411 SNP-3.18929170. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33080-LOC_Os03g33090|LOC_Os03g33080-LOC_Os03g33090|intergenic_region|LOC_Os03g33080-LOC_Os03g33090|||n.18930411C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2499 3 18930486 SNP-3.18929245. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33080-LOC_Os03g33090|LOC_Os03g33080-LOC_Os03g33090|intergenic_region|LOC_Os03g33080-LOC_Os03g33090|||n.18930486C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2500 3 18930903 SNP-3.18929662. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33080-LOC_Os03g33090|LOC_Os03g33080-LOC_Os03g33090|intergenic_region|LOC_Os03g33080-LOC_Os03g33090|||n.18930903A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2501 3 18932532 SNP-3.18931291. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33080-LOC_Os03g33090|LOC_Os03g33080-LOC_Os03g33090|intergenic_region|LOC_Os03g33080-LOC_Os03g33090|||n.18932532A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2502 3 18934236 SNP-3.18932995. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33080-LOC_Os03g33090|LOC_Os03g33080-LOC_Os03g33090|intergenic_region|LOC_Os03g33080-LOC_Os03g33090|||n.18934236C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2503 3 18937085 SNP-3.18935844. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33090-LOC_Os03g33100|LOC_Os03g33090-LOC_Os03g33100|intergenic_region|LOC_Os03g33090-LOC_Os03g33100|||n.18937085A>G|||||| GT ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2504 3 18937985 SNP-3.18936744. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33100|LOC_Os03g33100|transcript|LOC_Os03g33100.1|protein_coding|9/9|c.3670T>C|p.Asn1224His|3670/4113|3670/4113|1224/1370||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2505 3 18939087 SNP-3.18937846. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33100|LOC_Os03g33100|transcript|LOC_Os03g33100.1|protein_coding|8/9|c.2783G>T|p.Val928Val|2783/4113|2783/4113|928/1370||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2506 3 18939114 SNP-3.18937873. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33100|LOC_Os03g33100|transcript|LOC_Os03g33100.1|protein_coding|8/9|c.2756G>T|p.Val919Val|2756/4113|2756/4113|919/1370||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2507 3 18948677 SNP-3.18947436. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33110|LOC_Os03g33110|transcript|LOC_Os03g33110.1|protein_coding|1/4|c.101-230C>A|||||| GT 0/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2508 3 18948838 SNP-3.18947597. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33110|LOC_Os03g33110|transcript|LOC_Os03g33110.1|protein_coding|1/4|c.101-69C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2509 3 18950066 SNP-3.18948825. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33110|LOC_Os03g33110|transcript|LOC_Os03g33110.1|protein_coding|5/5|c.1053C>A|p.Ala351Ala|1053/1113|1053/1113|351/370||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2510 3 18950548 SNP-3.18949307. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33110-LOC_Os03g33130|LOC_Os03g33110-LOC_Os03g33130|intergenic_region|LOC_Os03g33110-LOC_Os03g33130|||n.18950548A>G|||||| GT 0/1 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/1 0/0 0/1 ./. 0/0 0/1 1/1 ./. 0/0 ./. 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/1 0/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2511 3 18950913 SNP-3.18949672. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33110-LOC_Os03g33130|LOC_Os03g33110-LOC_Os03g33130|intergenic_region|LOC_Os03g33110-LOC_Os03g33130|||n.18950913C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2512 3 18964247 SNP-3.18963006. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33150-LOC_Os03g33160|LOC_Os03g33150-LOC_Os03g33160|intergenic_region|LOC_Os03g33150-LOC_Os03g33160|||n.18964247C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2513 3 18967087 SNP-3.18965846. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33160|LOC_Os03g33160|transcript|LOC_Os03g33160.1|protein_coding|5/6|c.1144T>C|p.Ala382Pro|1144/1938|1144/1938|382/645||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2514 3 18967396 SNP-3.18966155. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33160|LOC_Os03g33160|transcript|LOC_Os03g33160.1|protein_coding|4/6|c.891T>C|p.Lys297Asn|891/1938|891/1938|297/645||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2515 3 18967417 SNP-3.18966176. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33160|LOC_Os03g33160|transcript|LOC_Os03g33160.1|protein_coding|4/6|c.870T>C|p.Asn290Asn|870/1938|870/1938|290/645||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. ./. 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2516 3 18968191 SNP-3.18966950. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33160|LOC_Os03g33160|transcript|LOC_Os03g33160.1|protein_coding|3/6|c.275G>T|p.Ile92Ile|275/1938|275/1938|92/645||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2517 3 18986724 SNP-3.18985483. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33172-LOC_Os03g33190|LOC_Os03g33172-LOC_Os03g33190|intergenic_region|LOC_Os03g33172-LOC_Os03g33190|||n.18986724C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2518 3 18987135 SNP-3.18985894. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g33190|LOC_Os03g33190|transcript|LOC_Os03g33190.1|protein_coding|2/2|c.1225G>T|p.Arg409*|1225/1596|1225/1596|409/531||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2519 3 18988598 SNP-3.18987357. C A . . PR;ANN=A|splice_region_variant&synonymous_variant|LOW|LOC_Os03g33190|LOC_Os03g33190|transcript|LOC_Os03g33190.1|protein_coding|1/2|c.821G>T|p.Val274Val|821/1596|821/1596|274/531||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2520 3 18988892 SNP-3.18987651. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33190|LOC_Os03g33190|transcript|LOC_Os03g33190.1|protein_coding|1/2|c.527G>T|p.His176Leu|527/1596|527/1596|176/531||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2521 3 18988967 SNP-3.18987726. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33190|LOC_Os03g33190|transcript|LOC_Os03g33190.1|protein_coding|1/2|c.452G>T|p.Trp151Leu|452/1596|452/1596|151/531|| GT ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2522 3 18988984 SNP-3.18987743. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33190|LOC_Os03g33190|transcript|LOC_Os03g33190.1|protein_coding|1/2|c.435G>T|p.Ser145Ser|435/1596|435/1596|145/531||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/1 1/1 0/1 0/1 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2523 3 18989003 SNP-3.18987762. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33190|LOC_Os03g33190|transcript|LOC_Os03g33190.1|protein_coding|1/2|c.416G>T|p.Ala139Val|416/1596|416/1596|139/531||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2524 3 18989771 SNP-3.18988530. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33190-LOC_Os03g33200|LOC_Os03g33190-LOC_Os03g33200|intergenic_region|LOC_Os03g33190-LOC_Os03g33200|||n.18989771C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2525 3 18990208 SNP-3.18988967. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33200|LOC_Os03g33200|transcript|LOC_Os03g33200.1|protein_coding|1/1|c.683G>T|p.Tyr228Phe|683/711|683/711|228/236||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 ./. 0/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2526 3 18990589 SNP-3.18989348. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33200|LOC_Os03g33200|transcript|LOC_Os03g33200.1|protein_coding|1/1|c.302G>T|p.Val101Val|302/711|302/711|101/236||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2527 3 18991158 SNP-3.18989917. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33200-LOC_Os03g33220|LOC_Os03g33200-LOC_Os03g33220|intergenic_region|LOC_Os03g33200-LOC_Os03g33220|||n.18991158C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2528 3 18993950 SNP-3.18992709. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33200-LOC_Os03g33220|LOC_Os03g33200-LOC_Os03g33220|intergenic_region|LOC_Os03g33200-LOC_Os03g33220|||n.18993950C>A|||||| GT 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2529 3 18994468 SNP-3.18993227. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33220|LOC_Os03g33220|transcript|LOC_Os03g33220.1|protein_coding|1/4|c.323C>A|p.Thr108Asn|323/2211|323/2211|108/736|| GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2530 3 19000902 SNP-3.18999661. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33230|LOC_Os03g33230|transcript|LOC_Os03g33230.1|protein_coding|3/5|c.2713G>T|p.Leu905Leu|2713/4896|2713/4896|905/1631||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2531 3 19011011 SNP-3.19009770. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33230-LOC_Os03g33240|LOC_Os03g33230-LOC_Os03g33240|intergenic_region|LOC_Os03g33230-LOC_Os03g33240|||n.19011011C>A|||||| GT 0/0 ./. 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 ./. 0/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 ./. 0/1 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2532 3 19015538 SNP-3.19014297. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33230-LOC_Os03g33240|LOC_Os03g33230-LOC_Os03g33240|intergenic_region|LOC_Os03g33230-LOC_Os03g33240|||n.19015538A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2533 3 19016872 SNP-3.19015631. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33230-LOC_Os03g33240|LOC_Os03g33230-LOC_Os03g33240|intergenic_region|LOC_Os03g33230-LOC_Os03g33240|||n.19016872C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2534 3 19017621 SNP-3.19016380. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33240|LOC_Os03g33240|transcript|LOC_Os03g33240.1|protein_coding|1/3|c.246C>A|p.Phe82Leu|246/2334|246/2334|82/777||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2535 3 19018686 SNP-3.19017445. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33240|LOC_Os03g33240|transcript|LOC_Os03g33240.1|protein_coding|2/3|c.1072A>G|p.Ile358Val|1072/2334|1072/2334|358/777|| GT 0/1 0/0 0/1 0/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 1/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 0/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2536 3 19018989 SNP-3.19017748. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33240|LOC_Os03g33240|transcript|LOC_Os03g33240.1|protein_coding|2/3|c.1375C>A|p.Pro459Thr|1375/2334|1375/2334|459/777|| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2537 3 19019053 SNP-3.19017812. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33240|LOC_Os03g33240|transcript|LOC_Os03g33240.1|protein_coding|2/3|c.1439C>A|p.Pro480His|1439/2334|1439/2334|480/777|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2538 3 19019327 SNP-3.19018086. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33240|LOC_Os03g33240|transcript|LOC_Os03g33240.1|protein_coding|2/3|c.1713C>A|p.Leu571Leu|1713/2334|1713/2334|571/777||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2539 3 19019901 SNP-3.19018660. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33240|LOC_Os03g33240|transcript|LOC_Os03g33240.1|protein_coding|3/3|c.2092C>A|p.Pro698Thr|2092/2334|2092/2334|698/777|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2540 3 19020214 SNP-3.19018973. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33240-LOC_Os03g33250|LOC_Os03g33240-LOC_Os03g33250|intergenic_region|LOC_Os03g33240-LOC_Os03g33250|||n.19020214C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 1/1 0/0 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/1 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2541 3 19021018 SNP-3.19019777. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33250|LOC_Os03g33250|transcript|LOC_Os03g33250.1|protein_coding|5/5|c.2496G>T|p.Val832Val|2496/2520|2496/2520|832/839||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2542 3 19021276 SNP-3.19020035. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33250|LOC_Os03g33250|transcript|LOC_Os03g33250.1|protein_coding|5/5|c.2238T>C|p.Leu746Phe|2238/2520|2238/2520|746/839||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 0/1 1/1 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 0/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2543 3 19022831 SNP-3.19021590. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33250|LOC_Os03g33250|transcript|LOC_Os03g33250.1|protein_coding|4/5|c.816G>T|p.Phe272Phe|816/2520|816/2520|272/839||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 ./. ./. ./. 1/1 0/0 ./. 1/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2544 3 19029066 SNP-3.19027825. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33260|LOC_Os03g33260|transcript|LOC_Os03g33260.1|protein_coding|1/3|c.667T>C|p.Ser223Pro|667/1803|667/1803|223/600|| GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2545 3 19033441 SNP-3.19032200. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33270-LOC_Os03g33280|LOC_Os03g33270-LOC_Os03g33280|intergenic_region|LOC_Os03g33270-LOC_Os03g33280|||n.19033441C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2546 3 19033520 SNP-3.19032279. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33270-LOC_Os03g33280|LOC_Os03g33270-LOC_Os03g33280|intergenic_region|LOC_Os03g33270-LOC_Os03g33280|||n.19033520A>G|||||| GT ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2547 3 19034694 SNP-3.19033453. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33280|LOC_Os03g33280|transcript|LOC_Os03g33280.1|protein_coding|1/6|c.284A>G|p.Leu95Arg|284/3399|284/3399|95/1132||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2548 3 19034859 SNP-3.19033618. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33280|LOC_Os03g33280|transcript|LOC_Os03g33280.1|protein_coding|1/6|c.449C>A|p.Phe150Tyr|449/3399|449/3399|150/1132||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2549 3 19038189 SNP-3.19036948. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33280|LOC_Os03g33280|transcript|LOC_Os03g33280.1|protein_coding|6/6|c.3174A>G|p.Leu1058Leu|3174/3399|3174/3399|1058/1132||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2550 3 19038303 SNP-3.19037062. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33280|LOC_Os03g33280|transcript|LOC_Os03g33280.1|protein_coding|6/6|c.3288C>A|p.Pro1096Pro|3288/3399|3288/3399|1096/1132||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2551 3 19039014 SNP-3.19037773. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33280-LOC_Os03g33290|LOC_Os03g33280-LOC_Os03g33290|intergenic_region|LOC_Os03g33280-LOC_Os03g33290|||n.19039014C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2552 3 19041315 SNP-3.19040074. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33290|LOC_Os03g33290|transcript|LOC_Os03g33290.1|protein_coding|3/5|c.1120-124G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2553 3 19043574 SNP-3.19042333. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|1/11|c.86C>A|p.Met29Lys|86/3564|86/3564|29/1187||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2554 3 19044516 SNP-3.19043275. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|3/11|c.768A>G|p.Thr256Thr|768/3564|768/3564|256/1187||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2555 3 19045129 SNP-3.19043888. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|3/10|c.836+545C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2556 3 19046131 SNP-3.19044890. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|3/10|c.837-65A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2557 3 19046856 SNP-3.19045615. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|5/11|c.1347C>A|p.Tyr449*|1347/3564|1347/3564|449/1187||;LOF=(LOC_Os03g33300|LOC_Os03g33300|1|1.00);NMD=(LOC_Os03g33300|LOC_Os03g33300|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2558 3 19046904 SNP-3.19045663. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|5/11|c.1395A>G|p.Val465Val|1395/3564|1395/3564|465/1187||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2559 3 19046950 SNP-3.19045709. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|5/11|c.1441C>A|p.Ala481Thr|1441/3564|1441/3564|481/1187||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2560 3 19049058 SNP-3.19047817. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|8/11|c.2065C>A|p.Ala689Thr|2065/3564|2065/3564|689/1187||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2561 3 19049571 SNP-3.19048330. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|8/11|c.2578C>A|p.Ile860Ile|2578/3564|2578/3564|860/1187||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/1 ./. ./. ./. 0/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2562 3 19050988 SNP-3.19049747. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33300|LOC_Os03g33300|transcript|LOC_Os03g33300.1|protein_coding|11/11|c.3346C>A|p.Trp1116Arg|3346/3564|3346/3564|1116/1187||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2563 3 19052901 SNP-3.19051660. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33310|LOC_Os03g33310|transcript|LOC_Os03g33310.1|protein_coding|3/3|c.461C>A|p.Gln154Gln|461/648|461/648|154/215||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 ./. ./. 0/0 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2564 3 19053056 SNP-3.19051815. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33310|LOC_Os03g33310|transcript|LOC_Os03g33310.1|protein_coding|3/3|c.616A>G|p.Gly206Gly|616/648|616/648|206/215||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2565 3 19062082 SNP-3.19060841. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33328|LOC_Os03g33328|transcript|LOC_Os03g33328.1|protein_coding|3/6|c.2146C>A|p.Cys716Ser|2146/3096|2146/3096|716/1031||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2566 3 19065499 SNP-3.19064258. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33328-LOC_Os03g33340|LOC_Os03g33328-LOC_Os03g33340|intergenic_region|LOC_Os03g33328-LOC_Os03g33340|||n.19065499C>A|||||| GT 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2567 3 19065690 SNP-3.19064449. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33328-LOC_Os03g33340|LOC_Os03g33328-LOC_Os03g33340|intergenic_region|LOC_Os03g33328-LOC_Os03g33340|||n.19065690C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2568 3 19076909 SNP-3.19075668. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33360|LOC_Os03g33360|transcript|LOC_Os03g33360.1|protein_coding|3/3|c.1079C>A|p.Thr360Lys|1079/1329|1079/1329|360/442|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2569 3 19077956 SNP-3.19076715. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33360-LOC_Os03g33370|LOC_Os03g33360-LOC_Os03g33370|intergenic_region|LOC_Os03g33360-LOC_Os03g33370|||n.19077956A>G|||||| GT 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2570 3 19079194 SNP-3.19077953. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33370|LOC_Os03g33370|transcript|LOC_Os03g33370.1|protein_coding|1/2|c.16A>G|p.Arg6Gly|19/1251|16/1248|6/415||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2571 3 19085363 SNP-3.19084122. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33380|LOC_Os03g33380|transcript|LOC_Os03g33380.1|protein_coding|1/1|c.226+776A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2572 3 19086741 SNP-3.19085500. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33380|LOC_Os03g33380|transcript|LOC_Os03g33380.1|protein_coding|1/1|c.227-226A>G|||||| GT ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2573 3 19087267 SNP-3.19086026. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33380|LOC_Os03g33380|transcript|LOC_Os03g33380.1|protein_coding|2/2|c.527A>G|p.His176Arg|527/903|527/903|176/300|| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2574 3 19087338 SNP-3.19086097. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33380|LOC_Os03g33380|transcript|LOC_Os03g33380.1|protein_coding|2/2|c.598C>A|p.Leu200Met|598/903|598/903|200/300|| GT 0/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 ./. 0/0 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2575 3 19087621 SNP-3.19086380. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33380|LOC_Os03g33380|transcript|LOC_Os03g33380.1|protein_coding|2/2|c.881C>A|p.Asn294Asn|881/903|881/903|294/300||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2576 3 19089509 SNP-3.19088268. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33380-LOC_Os03g33384|LOC_Os03g33380-LOC_Os03g33384|intergenic_region|LOC_Os03g33380-LOC_Os03g33384|||n.19089509A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2577 3 19092918 SNP-3.19091677. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33384-LOC_Os03g33390|LOC_Os03g33384-LOC_Os03g33390|intergenic_region|LOC_Os03g33384-LOC_Os03g33390|||n.19092918C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2578 3 19095009 SNP-3.19093768. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33390-LOC_Os03g33400|LOC_Os03g33390-LOC_Os03g33400|intergenic_region|LOC_Os03g33390-LOC_Os03g33400|||n.19095009A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2579 3 19096319 SNP-3.19095078. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33390-LOC_Os03g33400|LOC_Os03g33390-LOC_Os03g33400|intergenic_region|LOC_Os03g33390-LOC_Os03g33400|||n.19096319C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2580 3 19097885 SNP-3.19096644. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33400|LOC_Os03g33400|transcript|LOC_Os03g33400.1|protein_coding|1/1|c.208T>C|p.Gly70Arg|208/597|208/597|70/198||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2581 3 19097980 SNP-3.19096739. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33400|LOC_Os03g33400|transcript|LOC_Os03g33400.1|protein_coding|1/1|c.113T>C|p.Gly38Ala|113/597|113/597|38/198||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 |
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2582 3 19103719 SNP-3.19102478. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33420-LOC_Os03g33430|LOC_Os03g33420-LOC_Os03g33430|intergenic_region|LOC_Os03g33420-LOC_Os03g33430|||n.19103719C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 |
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2583 3 19104084 SNP-3.19102843. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33420-LOC_Os03g33430|LOC_Os03g33420-LOC_Os03g33430|intergenic_region|LOC_Os03g33420-LOC_Os03g33430|||n.19104084A>G|||||| GT ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2584 3 19104548 SNP-3.19103307. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33430|LOC_Os03g33430|transcript|LOC_Os03g33430.1|protein_coding|1/1|c.132C>A|p.Leu44Leu|132/573|132/573|44/190|| GT ./. 1/1 0/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/0 0/0 0/1 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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2585 3 19105632 SNP-3.19104391. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33430-LOC_Os03g33450|LOC_Os03g33430-LOC_Os03g33450|intergenic_region|LOC_Os03g33430-LOC_Os03g33450|||n.19105632C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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2586 3 19107776 SNP-3.19106535. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33430-LOC_Os03g33450|LOC_Os03g33430-LOC_Os03g33450|intergenic_region|LOC_Os03g33430-LOC_Os03g33450|||n.19107776A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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2587 3 19107792 SNP-3.19106551. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33430-LOC_Os03g33450|LOC_Os03g33430-LOC_Os03g33450|intergenic_region|LOC_Os03g33430-LOC_Os03g33450|||n.19107792C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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2588 3 19110031 SNP-3.19108790. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33430-LOC_Os03g33450|LOC_Os03g33430-LOC_Os03g33450|intergenic_region|LOC_Os03g33430-LOC_Os03g33450|||n.19110031A>G|||||| GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2589 3 19111719 SNP-3.19110478. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33430-LOC_Os03g33450|LOC_Os03g33430-LOC_Os03g33450|intergenic_region|LOC_Os03g33430-LOC_Os03g33450|||n.19111719C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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2590 3 19112213 SNP-3.19110972. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33430-LOC_Os03g33450|LOC_Os03g33430-LOC_Os03g33450|intergenic_region|LOC_Os03g33430-LOC_Os03g33450|||n.19112213A>G|||||| GT ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 |
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2591 3 19113142 SNP-3.19111901. C A . . PR;ANN=A|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g33450|LOC_Os03g33450|transcript|LOC_Os03g33450.1|protein_coding|2/2|c.293-1C>A||||||;LOF=(LOC_Os03g33450|LOC_Os03g33450|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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2592 3 19113904 SNP-3.19112663. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33450-LOC_Os03g33460|LOC_Os03g33450-LOC_Os03g33460|intergenic_region|LOC_Os03g33450-LOC_Os03g33460|||n.19113904C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2593 3 19114865 SNP-3.19113624. C A . . PR;ANN=A|splice_region_variant&intron_variant|LOW|LOC_Os03g33460|LOC_Os03g33460|transcript|LOC_Os03g33460.1|protein_coding|6/7|c.873-7G>T|||||| GT 0/0 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2594 3 19116045 SNP-3.19114804. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33460|LOC_Os03g33460|transcript|LOC_Os03g33460.1|protein_coding|4/8|c.686G>T|p.Met229Met|686/1464|686/1464|229/487||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2595 3 19119983 SNP-3.19118742. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33460-LOC_Os03g33480|LOC_Os03g33460-LOC_Os03g33480|intergenic_region|LOC_Os03g33460-LOC_Os03g33480|||n.19119983A>G|||||| GT 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 |
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2596 3 19120835 SNP-3.19119594. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33460-LOC_Os03g33480|LOC_Os03g33460-LOC_Os03g33480|intergenic_region|LOC_Os03g33460-LOC_Os03g33480|||n.19120835C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/1 ./. 0/0 0/1 0/0 0/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 0/0 0/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2597 3 19120968 SNP-3.19119727. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33460-LOC_Os03g33480|LOC_Os03g33460-LOC_Os03g33480|intergenic_region|LOC_Os03g33460-LOC_Os03g33480|||n.19120968A>G|||||| GT 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/1 ./. ./. 0/0 1/1 ./. 0/1 ./. 1/1 ./. 1/1 ./. 0/0 0/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/1 ./. ./. ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2598 3 19123027 SNP-3.19121786. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33460-LOC_Os03g33480|LOC_Os03g33460-LOC_Os03g33480|intergenic_region|LOC_Os03g33460-LOC_Os03g33480|||n.19123027A>G|||||| GT ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2599 3 19123074 SNP-3.19121833. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33460-LOC_Os03g33480|LOC_Os03g33460-LOC_Os03g33480|intergenic_region|LOC_Os03g33460-LOC_Os03g33480|||n.19123074A>G|||||| GT 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2600 3 19124647 SNP-3.19123406. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33460-LOC_Os03g33480|LOC_Os03g33460-LOC_Os03g33480|intergenic_region|LOC_Os03g33460-LOC_Os03g33480|||n.19124647A>G|||||| GT ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2601 3 19125149 SNP-3.19123908. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33460-LOC_Os03g33480|LOC_Os03g33460-LOC_Os03g33480|intergenic_region|LOC_Os03g33460-LOC_Os03g33480|||n.19125149C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2602 3 19127054 SNP-3.19125813. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33460-LOC_Os03g33480|LOC_Os03g33460-LOC_Os03g33480|intergenic_region|LOC_Os03g33460-LOC_Os03g33480|||n.19127054A>G|||||| GT 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 1/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. ./. 0/0 0/1 1/1 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2603 3 19127791 SNP-3.19126550. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33480|LOC_Os03g33480|transcript|LOC_Os03g33480.1|protein_coding|2/2|c.400A>G|p.Leu134Val|400/807|400/807|134/268||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/1 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/1 0/0 0/0 0/1 1/1 ./. 0/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2604 3 19127952 SNP-3.19126711. A G . . PR;ANN=G|stop_gained|HIGH|LOC_Os03g33480|LOC_Os03g33480|transcript|LOC_Os03g33480.1|protein_coding|2/2|c.561A>G|p.Tyr187*|561/807|561/807|187/268||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2605 3 19128108 SNP-3.19126867. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33480|LOC_Os03g33480|transcript|LOC_Os03g33480.1|protein_coding|2/2|c.717C>A|p.Lys239Lys|717/807|717/807|239/268||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2606 3 19128197 SNP-3.19126956. C A . . PR;ANN=A|splice_region_variant&stop_retained_variant|LOW|LOC_Os03g33480|LOC_Os03g33480|transcript|LOC_Os03g33480.1|protein_coding|2/2|c.806C>A|p.Ter269Ter|806/807|806/807|269/268||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
diff
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2607 3 19128237 SNP-3.19126996. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33480-LOC_Os03g33490|LOC_Os03g33480-LOC_Os03g33490|intergenic_region|LOC_Os03g33480-LOC_Os03g33490|||n.19128237C>A|||||| GT 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/1 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 ./. ./. 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 0/0 0/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2608 3 19128315 SNP-3.19127074. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33480-LOC_Os03g33490|LOC_Os03g33480-LOC_Os03g33490|intergenic_region|LOC_Os03g33480-LOC_Os03g33490|||n.19128315C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2609 3 19129577 SNP-3.19128336. C A . . PR;ANN=A|splice_region_variant&synonymous_variant|LOW|LOC_Os03g33490|LOC_Os03g33490|transcript|LOC_Os03g33490.1|protein_coding|1/2|c.201G>T|p.Thr67Thr|201/357|201/357|67/118||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2610 3 19129604 SNP-3.19128363. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33490|LOC_Os03g33490|transcript|LOC_Os03g33490.1|protein_coding|1/2|c.174G>T|p.Leu58Leu|174/357|174/357|58/118|| GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2611 3 19129676 SNP-3.19128435. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33490|LOC_Os03g33490|transcript|LOC_Os03g33490.1|protein_coding|1/2|c.102T>C|p.Leu34Leu|102/357|102/357|34/118||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2612 3 19130100 SNP-3.19128859. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33490-LOC_Os03g33500|LOC_Os03g33490-LOC_Os03g33500|intergenic_region|LOC_Os03g33490-LOC_Os03g33500|||n.19130100A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2613 3 19130299 SNP-3.19129058. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33490-LOC_Os03g33500|LOC_Os03g33490-LOC_Os03g33500|intergenic_region|LOC_Os03g33490-LOC_Os03g33500|||n.19130299A>G|||||| GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2614 3 19133639 SNP-3.19132398. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33490-LOC_Os03g33500|LOC_Os03g33490-LOC_Os03g33500|intergenic_region|LOC_Os03g33490-LOC_Os03g33500|||n.19133639A>G|||||| GT 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2615 3 19136653 SNP-3.19135412. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33490-LOC_Os03g33500|LOC_Os03g33490-LOC_Os03g33500|intergenic_region|LOC_Os03g33490-LOC_Os03g33500|||n.19136653C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2616 3 19136855 SNP-3.19135614. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33490-LOC_Os03g33500|LOC_Os03g33490-LOC_Os03g33500|intergenic_region|LOC_Os03g33490-LOC_Os03g33500|||n.19136855A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2617 3 19137832 SNP-3.19136591. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33490-LOC_Os03g33500|LOC_Os03g33490-LOC_Os03g33500|intergenic_region|LOC_Os03g33490-LOC_Os03g33500|||n.19137832A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2618 3 19138983 SNP-3.19137742. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33490-LOC_Os03g33500|LOC_Os03g33490-LOC_Os03g33500|intergenic_region|LOC_Os03g33490-LOC_Os03g33500|||n.19138983A>G|||||| GT 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/1 1/1 ./. 0/0 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 0/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2619 3 19139036 SNP-3.19137795. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33490-LOC_Os03g33500|LOC_Os03g33490-LOC_Os03g33500|intergenic_region|LOC_Os03g33490-LOC_Os03g33500|||n.19139036A>G|||||| GT 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2620 3 19139491 SNP-3.19138250. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33490-LOC_Os03g33500|LOC_Os03g33490-LOC_Os03g33500|intergenic_region|LOC_Os03g33490-LOC_Os03g33500|||n.19139491A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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changeset
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2621 3 19142199 SNP-3.19140958. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33500|LOC_Os03g33500|transcript|LOC_Os03g33500.1|protein_coding|2/2|c.406+192G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2622 3 19142346 SNP-3.19141105. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33500|LOC_Os03g33500|transcript|LOC_Os03g33500.1|protein_coding|2/2|c.406+45G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2623 3 19142467 SNP-3.19141226. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33500|LOC_Os03g33500|transcript|LOC_Os03g33500.1|protein_coding|2/3|c.330G>T|p.Pro110Pro|330/2241|330/2241|110/746||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2624 3 19142663 SNP-3.19141422. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33500|LOC_Os03g33500|transcript|LOC_Os03g33500.1|protein_coding|2/3|c.134T>C|p.Thr45Thr|134/2241|134/2241|45/746||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/1 1/1 |
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2625 3 19144676 SNP-3.19143435. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33500-LOC_Os03g33509|LOC_Os03g33500-LOC_Os03g33509|intergenic_region|LOC_Os03g33500-LOC_Os03g33509|||n.19144676A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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2626 3 19145269 SNP-3.19144028. C A . . PR;ANN=A|missense_variant&splice_region_variant|MODERATE|LOC_Os03g33509|LOC_Os03g33509|transcript|LOC_Os03g33509.1|protein_coding|1/2|c.110C>A|p.Ala37Glu|110/153|110/153|37/50|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2627 3 19145523 SNP-3.19144282. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33509-LOC_Os03g33520|LOC_Os03g33509-LOC_Os03g33520|intergenic_region|LOC_Os03g33509-LOC_Os03g33520|||n.19145523A>G|||||| GT 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2628 3 19146331 SNP-3.19145090. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33509-LOC_Os03g33520|LOC_Os03g33509-LOC_Os03g33520|intergenic_region|LOC_Os03g33509-LOC_Os03g33520|||n.19146331C>A|||||| GT ./. 1/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2629 3 19149086 SNP-3.19147845. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33520-LOC_Os03g33530|LOC_Os03g33520-LOC_Os03g33530|intergenic_region|LOC_Os03g33520-LOC_Os03g33530|||n.19149086A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2630 3 19149479 SNP-3.19148238. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33520-LOC_Os03g33530|LOC_Os03g33520-LOC_Os03g33530|intergenic_region|LOC_Os03g33520-LOC_Os03g33530|||n.19149479C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/1 1/1 0/1 0/0 0/0 0/1 1/1 0/0 0/1 0/1 ./. 0/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/1 ./. 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2631 3 19149706 SNP-3.19148465. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33520-LOC_Os03g33530|LOC_Os03g33520-LOC_Os03g33530|intergenic_region|LOC_Os03g33520-LOC_Os03g33530|||n.19149706C>A|||||| GT ./. 1/1 ./. 1/1 ./. 0/1 ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 ./. 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2632 3 19151296 SNP-3.19150055. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33520-LOC_Os03g33530|LOC_Os03g33520-LOC_Os03g33530|intergenic_region|LOC_Os03g33520-LOC_Os03g33530|||n.19151296C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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2633 3 19156140 SNP-3.19154899. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33530|LOC_Os03g33530|transcript|LOC_Os03g33530.1|protein_coding|3/5|c.4197T>C|p.His1399His|4197/6084|4197/6084|1399/2027|| GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2634 3 19158048 SNP-3.19156807. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33530|LOC_Os03g33530|transcript|LOC_Os03g33530.1|protein_coding|2/5|c.2434G>T|p.Pro812Ser|2434/6084|2434/6084|812/2027||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 ./. ./. 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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2635 3 19158432 SNP-3.19157191. C A . . PR;ANN=A|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g33530|LOC_Os03g33530|transcript|LOC_Os03g33530.1|protein_coding|1/4|c.2052-2G>T||||||;LOF=(LOC_Os03g33530|LOC_Os03g33530|1|1.00) GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2636 3 19165258 SNP-3.19164017. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33530-LOC_Os03g33540|LOC_Os03g33530-LOC_Os03g33540|intergenic_region|LOC_Os03g33530-LOC_Os03g33540|||n.19165258A>G|||||| GT 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. 1/1 0/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2637 3 19165316 SNP-3.19164075. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33530-LOC_Os03g33540|LOC_Os03g33530-LOC_Os03g33540|intergenic_region|LOC_Os03g33530-LOC_Os03g33540|||n.19165316C>A|||||| GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2638 3 19169014 SNP-3.19167773. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33540-LOC_Os03g33550|LOC_Os03g33540-LOC_Os03g33550|intergenic_region|LOC_Os03g33540-LOC_Os03g33550|||n.19169014A>G|||||| GT ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 0/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. ./. 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. |
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2639 3 19172308 SNP-3.19171067. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33540-LOC_Os03g33550|LOC_Os03g33540-LOC_Os03g33550|intergenic_region|LOC_Os03g33540-LOC_Os03g33550|||n.19172308A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2640 3 19177904 SNP-3.19176663. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33570-LOC_Os03g33580|LOC_Os03g33570-LOC_Os03g33580|intergenic_region|LOC_Os03g33570-LOC_Os03g33580|||n.19177904A>G|||||| GT 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2641 3 19178113 SNP-3.19176872. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33570-LOC_Os03g33580|LOC_Os03g33570-LOC_Os03g33580|intergenic_region|LOC_Os03g33570-LOC_Os03g33580|||n.19178113C>A|||||| GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2642 3 19178400 SNP-3.19177159. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33570-LOC_Os03g33580|LOC_Os03g33570-LOC_Os03g33580|intergenic_region|LOC_Os03g33570-LOC_Os03g33580|||n.19178400C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2643 3 19178485 SNP-3.19177244. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33570-LOC_Os03g33580|LOC_Os03g33570-LOC_Os03g33580|intergenic_region|LOC_Os03g33570-LOC_Os03g33580|||n.19178485C>A|||||| GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2644 3 19178506 SNP-3.19177265. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33570-LOC_Os03g33580|LOC_Os03g33570-LOC_Os03g33580|intergenic_region|LOC_Os03g33570-LOC_Os03g33580|||n.19178506C>A|||||| GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/0 1/1 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2645 3 19181841 SNP-3.19180600. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33570-LOC_Os03g33580|LOC_Os03g33570-LOC_Os03g33580|intergenic_region|LOC_Os03g33570-LOC_Os03g33580|||n.19181841C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2646 3 19181864 SNP-3.19180623. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33570-LOC_Os03g33580|LOC_Os03g33570-LOC_Os03g33580|intergenic_region|LOC_Os03g33570-LOC_Os03g33580|||n.19181864A>G|||||| GT 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. 0/1 1/1 ./. 1/1 0/1 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/1 0/1 0/0 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2647 3 19193977 SNP-3.19192736. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33580-LOC_Os03g33590|LOC_Os03g33580-LOC_Os03g33590|intergenic_region|LOC_Os03g33580-LOC_Os03g33590|||n.19193977C>A|||||| GT ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. 0/0 0/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/1 0/1 ./. 0/1 0/0 1/1 0/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2648 3 19194196 SNP-3.19192955. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33580-LOC_Os03g33590|LOC_Os03g33580-LOC_Os03g33590|intergenic_region|LOC_Os03g33580-LOC_Os03g33590|||n.19194196A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2649 3 19194737 SNP-3.19193496. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33580-LOC_Os03g33590|LOC_Os03g33580-LOC_Os03g33590|intergenic_region|LOC_Os03g33580-LOC_Os03g33590|||n.19194737C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2650 3 19198829 SNP-3.19197588. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33590|LOC_Os03g33590|transcript|LOC_Os03g33590.1|protein_coding|11/12|c.1222-611T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g33590|LOC_Os03g33590|transcript|LOC_Os03g33590.2|protein_coding|11/12|c.1222-611T>C|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2651 3 19204549 SNP-3.19203308. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33590-LOC_Os03g33600|LOC_Os03g33590-LOC_Os03g33600|intergenic_region|LOC_Os03g33590-LOC_Os03g33600|||n.19204549C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2652 3 19207080 SNP-3.19205839. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33600|LOC_Os03g33600|transcript|LOC_Os03g33600.1|protein_coding|1/1|c.219-95G>T|||||| GT 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2653 3 19207198 SNP-3.19205957. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33600|LOC_Os03g33600|transcript|LOC_Os03g33600.1|protein_coding|1/1|c.219-213T>C|||||| GT ./. 0/0 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 0/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2654 3 19207283 SNP-3.19206042. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33600|LOC_Os03g33600|transcript|LOC_Os03g33600.1|protein_coding|1/1|c.219-298G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2655 3 19207843 SNP-3.19206602. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33600|LOC_Os03g33600|transcript|LOC_Os03g33600.1|protein_coding|1/1|c.218+338G>T|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2656 3 19210587 SNP-3.19209346. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33600-LOC_Os03g33610|LOC_Os03g33600-LOC_Os03g33610|intergenic_region|LOC_Os03g33600-LOC_Os03g33610|||n.19210587A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2657 3 19213861 SNP-3.19212620. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33610-LOC_Os03g33620|LOC_Os03g33610-LOC_Os03g33620|intergenic_region|LOC_Os03g33610-LOC_Os03g33620|||n.19213861A>G|||||| GT 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 ./. 0/1 0/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 ./. 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2658 3 19214991 SNP-3.19213750. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33610-LOC_Os03g33620|LOC_Os03g33610-LOC_Os03g33620|intergenic_region|LOC_Os03g33610-LOC_Os03g33620|||n.19214991A>G|||||| GT 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/1 ./. 1/1 0/0 0/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2659 3 19217756 SNP-3.19216515. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33610-LOC_Os03g33620|LOC_Os03g33610-LOC_Os03g33620|intergenic_region|LOC_Os03g33610-LOC_Os03g33620|||n.19217756C>A|||||| GT 0/0 1/1 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2660 3 19217918 SNP-3.19216677. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33610-LOC_Os03g33620|LOC_Os03g33610-LOC_Os03g33620|intergenic_region|LOC_Os03g33610-LOC_Os03g33620|||n.19217918C>A|||||| GT ./. 1/1 0/0 ./. 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2661 3 19218405 SNP-3.19217164. C A . . PR;ANN=A|stop_lost&splice_region_variant|HIGH|LOC_Os03g33620|LOC_Os03g33620|transcript|LOC_Os03g33620.1|protein_coding|4/4|c.365G>T|p.Ter122Leuext*?|365/366|365/366|122/121||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 1/1 0/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2662 3 19218540 SNP-3.19217299. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33620|LOC_Os03g33620|transcript|LOC_Os03g33620.1|protein_coding|4/4|c.230G>T|p.Met77Met|230/366|230/366|77/121||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2663 3 19222783 SNP-3.19221542. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33620-LOC_Os03g33640|LOC_Os03g33620-LOC_Os03g33640|intergenic_region|LOC_Os03g33620-LOC_Os03g33640|||n.19222783A>G|||||| GT 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 0/0 1/1 1/1 0/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2664 3 19223361 SNP-3.19222120. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33620-LOC_Os03g33640|LOC_Os03g33620-LOC_Os03g33640|intergenic_region|LOC_Os03g33620-LOC_Os03g33640|||n.19223361A>G|||||| GT ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 ./. 1/1 ./. 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/1 0/1 1/1 ./. 0/0 ./. 0/0 0/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2665 3 19225307 SNP-3.19224066. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33620-LOC_Os03g33640|LOC_Os03g33620-LOC_Os03g33640|intergenic_region|LOC_Os03g33620-LOC_Os03g33640|||n.19225307C>A|||||| GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2666 3 19238836 SNP-3.19237595. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33640-LOC_Os03g33650|LOC_Os03g33640-LOC_Os03g33650|intergenic_region|LOC_Os03g33640-LOC_Os03g33650|||n.19238836C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 0/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2667 3 19238905 SNP-3.19237664. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33640-LOC_Os03g33650|LOC_Os03g33640-LOC_Os03g33650|intergenic_region|LOC_Os03g33640-LOC_Os03g33650|||n.19238905C>A|||||| GT 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2668 3 19241250 SNP-3.19240009. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33640-LOC_Os03g33650|LOC_Os03g33640-LOC_Os03g33650|intergenic_region|LOC_Os03g33640-LOC_Os03g33650|||n.19241250A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2669 3 19243170 SNP-3.19241929. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33640-LOC_Os03g33650|LOC_Os03g33640-LOC_Os03g33650|intergenic_region|LOC_Os03g33640-LOC_Os03g33650|||n.19243170A>G|||||| GT 0/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/1 ./. 0/0 ./. 0/0 ./. 0/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 ./. 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2670 3 19243554 SNP-3.19242313. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33640-LOC_Os03g33650|LOC_Os03g33640-LOC_Os03g33650|intergenic_region|LOC_Os03g33640-LOC_Os03g33650|||n.19243554C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2671 3 19246770 SNP-3.19245529. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33650|LOC_Os03g33650|transcript|LOC_Os03g33650.1|protein_coding|3/3|c.1755A>G|p.Ser585Ser|1931/3685|1755/3147|585/1048||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2672 3 19247694 SNP-3.19246453. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33650|LOC_Os03g33650|transcript|LOC_Os03g33650.1|protein_coding|3/3|c.2679C>A|p.Pro893Pro|2855/3685|2679/3147|893/1048||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2673 3 19247862 SNP-3.19246621. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33650|LOC_Os03g33650|transcript|LOC_Os03g33650.1|protein_coding|3/3|c.2847C>A|p.Leu949Leu|3023/3685|2847/3147|949/1048||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2674 3 19248594 SNP-3.19247353. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33650-LOC_Os03g33660|LOC_Os03g33650-LOC_Os03g33660|intergenic_region|LOC_Os03g33650-LOC_Os03g33660|||n.19248594C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2675 3 19248842 SNP-3.19247601. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33650-LOC_Os03g33660|LOC_Os03g33650-LOC_Os03g33660|intergenic_region|LOC_Os03g33650-LOC_Os03g33660|||n.19248842C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2676 3 19248864 SNP-3.19247623. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33650-LOC_Os03g33660|LOC_Os03g33650-LOC_Os03g33660|intergenic_region|LOC_Os03g33650-LOC_Os03g33660|||n.19248864C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2677 3 19248886 SNP-3.19247645. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33650-LOC_Os03g33660|LOC_Os03g33650-LOC_Os03g33660|intergenic_region|LOC_Os03g33650-LOC_Os03g33660|||n.19248886C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2678 3 19251900 SNP-3.19250659. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33650-LOC_Os03g33660|LOC_Os03g33650-LOC_Os03g33660|intergenic_region|LOC_Os03g33650-LOC_Os03g33660|||n.19251900C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2679 3 19251932 SNP-3.19250691. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33650-LOC_Os03g33660|LOC_Os03g33650-LOC_Os03g33660|intergenic_region|LOC_Os03g33650-LOC_Os03g33660|||n.19251932A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2680 3 19252276 SNP-3.19251035. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33650-LOC_Os03g33660|LOC_Os03g33650-LOC_Os03g33660|intergenic_region|LOC_Os03g33650-LOC_Os03g33660|||n.19252276A>G|||||| GT ./. 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 1/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2681 3 19253417 SNP-3.19252176. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33650-LOC_Os03g33660|LOC_Os03g33650-LOC_Os03g33660|intergenic_region|LOC_Os03g33650-LOC_Os03g33660|||n.19253417A>G|||||| GT 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/1 1/1 0/1 ./. 1/1 0/0 1/1 0/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2682 3 19256045 SNP-3.19254804. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33660-LOC_Os03g33670|LOC_Os03g33660-LOC_Os03g33670|intergenic_region|LOC_Os03g33660-LOC_Os03g33670|||n.19256045C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2683 3 19257814 SNP-3.19256573. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33670|LOC_Os03g33670|transcript|LOC_Os03g33670.1|protein_coding|1/3|c.44A>G|p.Val15Gly|44/1071|44/1071|15/356||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2684 3 19258481 SNP-3.19257240. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33670|LOC_Os03g33670|transcript|LOC_Os03g33670.1|protein_coding|1/2|c.626-50C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2685 3 19264529 SNP-3.19263288. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33680|LOC_Os03g33680|transcript|LOC_Os03g33680.1|protein_coding|4/5|c.1340+59A>G|||||| GT 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2686 3 19265090 SNP-3.19263849. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33680|LOC_Os03g33680|transcript|LOC_Os03g33680.1|protein_coding|5/6|c.1719C>A|p.Leu573Leu|1719/3450|1719/3450|573/1149||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 1/1 ./. 0/0 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2687 3 19266201 SNP-3.19264960. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33680|LOC_Os03g33680|transcript|LOC_Os03g33680.1|protein_coding|6/6|c.2715A>G|p.Asp905Glu|2715/3450|2715/3450|905/1149||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 0/1 0/1 0/1 ./. ./. ./. 0/1 ./. 0/1 0/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 ./. 0/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 1/1 ./. 0/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/1 1/1 1/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2688 3 19266413 SNP-3.19265172. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33680|LOC_Os03g33680|transcript|LOC_Os03g33680.1|protein_coding|6/6|c.2927C>A|p.Val976Glu|2927/3450|2927/3450|976/1149||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/1 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2689 3 19266618 SNP-3.19265377. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33680|LOC_Os03g33680|transcript|LOC_Os03g33680.1|protein_coding|6/6|c.3132C>A|p.Gly1044Gly|3132/3450|3132/3450|1044/1149||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 ./. 0/1 0/0 ./. ./. 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2690 3 19271202 SNP-3.19269961. C A . . PR;ANN=A|splice_region_variant&synonymous_variant|LOW|LOC_Os03g33690|LOC_Os03g33690|transcript|LOC_Os03g33690.1|protein_coding|6/8|c.2116C>A|p.Arg706Arg|2116/2250|2116/2250|706/749|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2691 3 19273141 SNP-3.19271900. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33700|LOC_Os03g33700|transcript|LOC_Os03g33700.1|protein_coding|3/3|c.1095G>T|p.Leu365Leu|1095/1821|1095/1821|365/606||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2692 3 19281719 SNP-3.19280478. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33730|LOC_Os03g33730|transcript|LOC_Os03g33730.1|protein_coding|1/5|c.51+15G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 ./. ./. 0/1 1/1 ./. 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2693 3 19282070 SNP-3.19280829. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33730-LOC_Os03g33740|LOC_Os03g33730-LOC_Os03g33740|intergenic_region|LOC_Os03g33730-LOC_Os03g33740|||n.19282070A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/1 0/1 ./. 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2694 3 19283750 SNP-3.19282509. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33730-LOC_Os03g33740|LOC_Os03g33730-LOC_Os03g33740|intergenic_region|LOC_Os03g33730-LOC_Os03g33740|||n.19283750C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2695 3 19284115 SNP-3.19282874. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33730-LOC_Os03g33740|LOC_Os03g33730-LOC_Os03g33740|intergenic_region|LOC_Os03g33730-LOC_Os03g33740|||n.19284115C>A|||||| GT 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2696 3 19284183 SNP-3.19282942. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33730-LOC_Os03g33740|LOC_Os03g33730-LOC_Os03g33740|intergenic_region|LOC_Os03g33730-LOC_Os03g33740|||n.19284183A>G|||||| GT 0/1 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 ./. 1/1 ./. ./. 1/1 0/1 1/1 0/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. 0/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 1/1 ./. ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2697 3 19284232 SNP-3.19282991. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33730-LOC_Os03g33740|LOC_Os03g33730-LOC_Os03g33740|intergenic_region|LOC_Os03g33730-LOC_Os03g33740|||n.19284232C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2698 3 19287495 SNP-3.19286254. C A . . PR;ANN=A|missense_variant&splice_region_variant|MODERATE|LOC_Os03g33740|LOC_Os03g33740|transcript|LOC_Os03g33740.1|protein_coding|1/7|c.17C>A|p.Gly6Glu|17/2181|17/2181|6/726||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/1 0/0 1/1 0/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2699 3 19287814 SNP-3.19286573. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33740|LOC_Os03g33740|transcript|LOC_Os03g33740.1|protein_coding|2/7|c.217C>A|p.Lys73Lys|217/2181|217/2181|73/726||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2700 3 19288045 SNP-3.19286804. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33740|LOC_Os03g33740|transcript|LOC_Os03g33740.1|protein_coding|2/7|c.448C>A|p.Ser150Ser|448/2181|448/2181|150/726||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2701 3 19288594 SNP-3.19287353. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33740|LOC_Os03g33740|transcript|LOC_Os03g33740.1|protein_coding|3/7|c.824C>A|p.Pro275Gln|824/2181|824/2181|275/726|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2702 3 19289149 SNP-3.19287908. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33740|LOC_Os03g33740|transcript|LOC_Os03g33740.1|protein_coding|4/7|c.1301C>A|p.Thr434Lys|1301/2181|1301/2181|434/726|| GT 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2703 3 19289418 SNP-3.19288177. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33740|LOC_Os03g33740|transcript|LOC_Os03g33740.1|protein_coding|4/7|c.1570C>A|p.His524Asn|1570/2181|1570/2181|524/726|| GT 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2704 3 19289684 SNP-3.19288443. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33740|LOC_Os03g33740|transcript|LOC_Os03g33740.1|protein_coding|5/7|c.1680A>G|p.Asn560Lys|1680/2181|1680/2181|560/726||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2705 3 19292046 SNP-3.19290805. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33740-LOC_Os03g33750|LOC_Os03g33740-LOC_Os03g33750|intergenic_region|LOC_Os03g33740-LOC_Os03g33750|||n.19292046C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/0 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2706 3 19294696 SNP-3.19293206. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33750|LOC_Os03g33750|transcript|LOC_Os03g33750.1|protein_coding|2/4|c.356C>A|p.Ser119Tyr|356/1062|356/1062|119/353|| GT ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2707 3 19295568 SNP-3.19294078. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33750|LOC_Os03g33750|transcript|LOC_Os03g33750.1|protein_coding|2/3|c.876+352C>A|||||| GT 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2708 3 19296252 SNP-3.19294762. A G . . PR;ANN=G|splice_donor_variant&intron_variant|HIGH|LOC_Os03g33750|LOC_Os03g33750|transcript|LOC_Os03g33750.1|protein_coding|3/3|c.909+1A>G||||||;LOF=(LOC_Os03g33750|LOC_Os03g33750|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 ./. 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2709 3 19296949 SNP-3.19295459. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33750-LOC_Os03g33760|LOC_Os03g33750-LOC_Os03g33760|intergenic_region|LOC_Os03g33750-LOC_Os03g33760|||n.19296949A>G|||||| GT 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2710 3 19297394 SNP-3.19295904. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33750-LOC_Os03g33760|LOC_Os03g33750-LOC_Os03g33760|intergenic_region|LOC_Os03g33750-LOC_Os03g33760|||n.19297394A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2711 3 19301555 SNP-3.19300065. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33760|LOC_Os03g33760|transcript|LOC_Os03g33760.1|protein_coding|3/6|c.2318C>A|p.Val773Glu|2318/4608|2318/4608|773/1535||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2712 3 19302439 SNP-3.19300949. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33760|LOC_Os03g33760|transcript|LOC_Os03g33760.1|protein_coding|4/6|c.2965C>A|p.Lys989Lys|2965/4608|2965/4608|989/1535||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2713 3 19309647 SNP-3.19308157. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33770-LOC_Os03g33780|LOC_Os03g33770-LOC_Os03g33780|intergenic_region|LOC_Os03g33770-LOC_Os03g33780|||n.19309647C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2714 3 19315968 SNP-3.19314478. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33790|LOC_Os03g33790|transcript|LOC_Os03g33790.1|protein_coding|3/3|c.508C>A|p.Cys170Ser|508/849|508/849|170/282||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2715 3 19316683 SNP-3.19315193. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33790-LOC_Os03g33800|LOC_Os03g33790-LOC_Os03g33800|intergenic_region|LOC_Os03g33790-LOC_Os03g33800|||n.19316683C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2716 3 19317266 SNP-3.19315776. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33790-LOC_Os03g33800|LOC_Os03g33790-LOC_Os03g33800|intergenic_region|LOC_Os03g33790-LOC_Os03g33800|||n.19317266A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2717 3 19317544 SNP-3.19316054. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33790-LOC_Os03g33800|LOC_Os03g33790-LOC_Os03g33800|intergenic_region|LOC_Os03g33790-LOC_Os03g33800|||n.19317544C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2718 3 19318627 SNP-3.19317137. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33800|LOC_Os03g33800|transcript|LOC_Os03g33800.1|protein_coding|1/1|c.343+98G>T|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2719 3 19318755 SNP-3.19317265. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33800|LOC_Os03g33800|transcript|LOC_Os03g33800.1|protein_coding|1/2|c.313T>C|p.Thr105Pro|313/369|313/369|105/122||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2720 3 19321635 SNP-3.19320145. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33810|LOC_Os03g33810|transcript|LOC_Os03g33810.1|protein_coding|1/2|c.405G>T|p.Gln135His|405/1641|405/1641|135/546||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2721 3 19321748 SNP-3.19320258. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33810|LOC_Os03g33810|transcript|LOC_Os03g33810.1|protein_coding|1/2|c.292G>T|p.Cys98Cys|292/1641|292/1641|98/546||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2722 3 19321768 SNP-3.19320278. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33810|LOC_Os03g33810|transcript|LOC_Os03g33810.1|protein_coding|1/2|c.272G>T|p.Val91Val|272/1641|272/1641|91/546||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2723 3 19321908 SNP-3.19320418. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33810|LOC_Os03g33810|transcript|LOC_Os03g33810.1|protein_coding|1/2|c.132T>C|p.Ile44Ile|132/1641|132/1641|44/546||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/1 ./. 1/1 0/0 0/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2724 3 19322247 SNP-3.19320757. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33810-LOC_Os03g33819|LOC_Os03g33810-LOC_Os03g33819|intergenic_region|LOC_Os03g33810-LOC_Os03g33819|||n.19322247A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2725 3 19323330 SNP-3.19321840. C A . . PR;ANN=A|splice_region_variant&stop_retained_variant|LOW|LOC_Os03g33819|LOC_Os03g33819|transcript|LOC_Os03g33819.1|protein_coding|3/3|c.2701G>T|p.Ter901Ter|2701/2703|2701/2703|901/900||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2726 3 19325067 SNP-3.19323577. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33819|LOC_Os03g33819|transcript|LOC_Os03g33819.1|protein_coding|2/3|c.1010T>C|p.Ala337Ala|1010/2703|1010/2703|337/900||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 0/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2727 3 19330460 SNP-3.19328970. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33828|LOC_Os03g33828|transcript|LOC_Os03g33828.1|protein_coding|3/3|c.763-124T>C|||||| GT 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2728 3 19339191 SNP-3.19337701. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33850-LOC_Os03g33860|LOC_Os03g33850-LOC_Os03g33860|intergenic_region|LOC_Os03g33850-LOC_Os03g33860|||n.19339191A>G|||||| GT 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2729 3 19340848 SNP-3.19339358. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33860|LOC_Os03g33860|transcript|LOC_Os03g33860.1|protein_coding|1/1|c.128C>A|p.His43His|128/1143|128/1143|43/380||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2730 3 19341601 SNP-3.19340111. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33860|LOC_Os03g33860|transcript|LOC_Os03g33860.1|protein_coding|1/1|c.881A>G|p.Arg294Arg|881/1143|881/1143|294/380||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2731 3 19350828 SNP-3.19349338. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g33890|LOC_Os03g33890|transcript|LOC_Os03g33890.1|protein_coding|2/2|c.595T>C|p.Ala199Pro|595/723|595/723|199/240||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 ./. ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2732 3 19351341 SNP-3.19349851. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33890|LOC_Os03g33890|transcript|LOC_Os03g33890.1|protein_coding|1/1|c.158-76G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2733 3 19352903 SNP-3.19351413. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33890-LOC_Os03g33900|LOC_Os03g33890-LOC_Os03g33900|intergenic_region|LOC_Os03g33890-LOC_Os03g33900|||n.19352903A>G|||||| GT ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2734 3 19353261 SNP-3.19351771. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g33900|LOC_Os03g33900|transcript|LOC_Os03g33900.1|protein_coding|4/4|c.1090G>T|p.Arg364*|1090/1428|1090/1428|364/475||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. ./. 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. ./. 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2735 3 19354321 SNP-3.19352831. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g33900|LOC_Os03g33900|transcript|LOC_Os03g33900.1|protein_coding|3/4|c.510G>T|p.Asp170Asp|510/1428|510/1428|170/475||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2736 3 19354906 SNP-3.19353416. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g33900|LOC_Os03g33900|transcript|LOC_Os03g33900.1|protein_coding|1/3|c.292-26G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2737 3 19356291 SNP-3.19354801. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33900-LOC_Os03g33920|LOC_Os03g33900-LOC_Os03g33920|intergenic_region|LOC_Os03g33900-LOC_Os03g33920|||n.19356291C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2738 3 19365137 SNP-3.19363647. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33920-LOC_Os03g33930|LOC_Os03g33920-LOC_Os03g33930|intergenic_region|LOC_Os03g33920-LOC_Os03g33930|||n.19365137C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/1 1/1 1/1 1/1 0/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 0/1 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2739 3 19365516 SNP-3.19364026. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33920-LOC_Os03g33930|LOC_Os03g33920-LOC_Os03g33930|intergenic_region|LOC_Os03g33920-LOC_Os03g33930|||n.19365516A>G|||||| GT 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/1 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2740 3 19365823 SNP-3.19364333. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33920-LOC_Os03g33930|LOC_Os03g33920-LOC_Os03g33930|intergenic_region|LOC_Os03g33920-LOC_Os03g33930|||n.19365823C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2741 3 19366033 SNP-3.19364543. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g33930|LOC_Os03g33930|transcript|LOC_Os03g33930.1|protein_coding|2/2|c.750T>C|p.Val250Val|750/837|750/837|250/278||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2742 3 19367600 SNP-3.19366110. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33930-LOC_Os03g33940|LOC_Os03g33930-LOC_Os03g33940|intergenic_region|LOC_Os03g33930-LOC_Os03g33940|||n.19367600C>A|||||| GT 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2743 3 19368394 SNP-3.19366904. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g33930-LOC_Os03g33940|LOC_Os03g33930-LOC_Os03g33940|intergenic_region|LOC_Os03g33930-LOC_Os03g33940|||n.19368394A>G|||||| GT 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2744 3 19368681 SNP-3.19367191. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33940|LOC_Os03g33940|transcript|LOC_Os03g33940.1|protein_coding|3/3|c.3115G>T|p.Asn1039Tyr|3115/3348|3115/3348|1039/1115||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2745 3 19368705 SNP-3.19367215. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g33940|LOC_Os03g33940|transcript|LOC_Os03g33940.1|protein_coding|3/3|c.3091G>T|p.Glu1031*|3091/3348|3091/3348|1031/1115|| GT ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2746 3 19369044 SNP-3.19367554. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g33940|LOC_Os03g33940|transcript|LOC_Os03g33940.1|protein_coding|3/3|c.2752G>T|p.Arg918Trp|2752/3348|2752/3348|918/1115||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2747 3 19376452 SNP-3.19374962. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33950-LOC_Os03g33960|LOC_Os03g33950-LOC_Os03g33960|intergenic_region|LOC_Os03g33950-LOC_Os03g33960|||n.19376452C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2748 3 19382095 SNP-3.19380605. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g33960-LOC_Os03g33970|LOC_Os03g33960-LOC_Os03g33970|intergenic_region|LOC_Os03g33960-LOC_Os03g33970|||n.19382095C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 0/0 0/0 1/1 ./. 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2749 3 19390968 SNP-3.19389478. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g33980|LOC_Os03g33980|transcript|LOC_Os03g33980.1|protein_coding|1/2|c.187+961A>G|||||| GT 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2750 3 19404735 SNP-3.19403245. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34000-LOC_Os03g34020|LOC_Os03g34000-LOC_Os03g34020|intergenic_region|LOC_Os03g34000-LOC_Os03g34020|||n.19404735A>G|||||| GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2751 3 19404760 SNP-3.19403270. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34000-LOC_Os03g34020|LOC_Os03g34000-LOC_Os03g34020|intergenic_region|LOC_Os03g34000-LOC_Os03g34020|||n.19404760C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2752 3 19405421 SNP-3.19403931. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34000-LOC_Os03g34020|LOC_Os03g34000-LOC_Os03g34020|intergenic_region|LOC_Os03g34000-LOC_Os03g34020|||n.19405421A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2753 3 19407854 SNP-3.19406364. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34000-LOC_Os03g34020|LOC_Os03g34000-LOC_Os03g34020|intergenic_region|LOC_Os03g34000-LOC_Os03g34020|||n.19407854C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2754 3 19408391 SNP-3.19406901. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g34020|LOC_Os03g34020|transcript|LOC_Os03g34020.1|protein_coding|1/2|c.140A>G|p.Arg47Arg|140/573|140/573|47/190||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2755 3 19409064 SNP-3.19407574. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34020-LOC_Os03g34030|LOC_Os03g34020-LOC_Os03g34030|intergenic_region|LOC_Os03g34020-LOC_Os03g34030|||n.19409064C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 1/1 0/0 1/1 ./. ./. 0/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/1 ./. 1/1 ./. 1/1 0/0 ./. 0/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2756 3 19409221 SNP-3.19407731. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34020-LOC_Os03g34030|LOC_Os03g34020-LOC_Os03g34030|intergenic_region|LOC_Os03g34020-LOC_Os03g34030|||n.19409221C>A|||||| GT 0/1 1/1 0/0 1/1 0/1 0/0 0/0 0/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 0/0 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2757 3 19412162 SNP-3.19410672. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34030-LOC_Os03g34040|LOC_Os03g34030-LOC_Os03g34040|intergenic_region|LOC_Os03g34030-LOC_Os03g34040|||n.19412162C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2758 3 19414835 SNP-3.19413345. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g34040|LOC_Os03g34040|transcript|LOC_Os03g34040.1|protein_coding|1/1|c.732-1306G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g34040|LOC_Os03g34040|transcript|LOC_Os03g34040.2|protein_coding|2/2|c.615-1306G>T||||||,A|intron_variant|MODIFIER|LOC_Os03g34040|LOC_Os03g34040|transcript|LOC_Os03g34040.3|protein_coding|1/2|c.732-466G>T|||||| GT 0/0 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 ./. 1/1 ./. 0/0 0/1 1/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2759 3 19415864 SNP-3.19414374. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g34040|LOC_Os03g34040|transcript|LOC_Os03g34040.1|protein_coding|1/1|c.731+444T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g34040|LOC_Os03g34040|transcript|LOC_Os03g34040.2|protein_coding|2/2|c.614+444T>C||||||,G|intron_variant|MODIFIER|LOC_Os03g34040|LOC_Os03g34040|transcript|LOC_Os03g34040.3|protein_coding|1/2|c.731+444T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2760 3 19417157 SNP-3.19415667. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34040-LOC_Os03g34070|LOC_Os03g34040-LOC_Os03g34070|intergenic_region|LOC_Os03g34040-LOC_Os03g34070|||n.19417157C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/1 ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 0/1 0/0 0/0 ./. 1/1 0/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2761 3 19417344 SNP-3.19415854. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34040-LOC_Os03g34070|LOC_Os03g34040-LOC_Os03g34070|intergenic_region|LOC_Os03g34040-LOC_Os03g34070|||n.19417344C>A|||||| GT ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2762 3 19420407 SNP-3.19418917. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34040-LOC_Os03g34070|LOC_Os03g34040-LOC_Os03g34070|intergenic_region|LOC_Os03g34040-LOC_Os03g34070|||n.19420407A>G|||||| GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2763 3 19422085 SNP-3.19420595. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g34070|LOC_Os03g34070|transcript|LOC_Os03g34070.1|protein_coding|2/5|c.579A>G|p.Asp193Glu|579/1215|579/1215|193/404||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2764 3 19422174 SNP-3.19420684. C A . . PR;ANN=A|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g34070|LOC_Os03g34070|transcript|LOC_Os03g34070.1|protein_coding|2/4|c.616-2C>A||||||;LOF=(LOC_Os03g34070|LOC_Os03g34070|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2765 3 19422218 SNP-3.19420728. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g34070|LOC_Os03g34070|transcript|LOC_Os03g34070.1|protein_coding|3/5|c.658C>A|p.Asn220Asn|658/1215|658/1215|220/404||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2766 3 19422797 SNP-3.19421307. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g34070|LOC_Os03g34070|transcript|LOC_Os03g34070.1|protein_coding|4/4|c.934+146C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2767 3 19425823 SNP-3.19424333. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34070-LOC_Os03g34090|LOC_Os03g34070-LOC_Os03g34090|intergenic_region|LOC_Os03g34070-LOC_Os03g34090|||n.19425823C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2768 3 19425921 SNP-3.19424431. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34070-LOC_Os03g34090|LOC_Os03g34070-LOC_Os03g34090|intergenic_region|LOC_Os03g34070-LOC_Os03g34090|||n.19425921C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2769 3 19426001 SNP-3.19424511. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34070-LOC_Os03g34090|LOC_Os03g34070-LOC_Os03g34090|intergenic_region|LOC_Os03g34070-LOC_Os03g34090|||n.19426001C>A|||||| GT 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2770 3 19426360 SNP-3.19424870. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34070-LOC_Os03g34090|LOC_Os03g34070-LOC_Os03g34090|intergenic_region|LOC_Os03g34070-LOC_Os03g34090|||n.19426360C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2771 3 19426735 SNP-3.19425245. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g34090|LOC_Os03g34090|transcript|LOC_Os03g34090.1|protein_coding|1/1|c.105C>A|p.Ser35Ser|105/708|105/708|35/235||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/1 0/1 1/1 0/1 0/0 0/0 0/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2772 3 19426905 SNP-3.19425415. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g34090|LOC_Os03g34090|transcript|LOC_Os03g34090.1|protein_coding|1/1|c.275C>A|p.Arg92Lys|275/708|275/708|92/235||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/1 1/1 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2773 3 19427164 SNP-3.19425674. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g34090|LOC_Os03g34090|transcript|LOC_Os03g34090.1|protein_coding|1/1|c.534A>G|p.Pro178Pro|534/708|534/708|178/235||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2774 3 19427190 SNP-3.19425700. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g34090|LOC_Os03g34090|transcript|LOC_Os03g34090.1|protein_coding|1/1|c.560C>A|p.Arg187His|560/708|560/708|187/235||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2775 3 19432253 SNP-3.19430763. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34096-LOC_Os03g34102|LOC_Os03g34096-LOC_Os03g34102|intergenic_region|LOC_Os03g34096-LOC_Os03g34102|||n.19432253A>G|||||| GT 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2776 3 19434788 SNP-3.19433298. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34102-LOC_Os03g34120|LOC_Os03g34102-LOC_Os03g34120|intergenic_region|LOC_Os03g34102-LOC_Os03g34120|||n.19434788A>G|||||| GT 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2777 3 19435700 SNP-3.19434210. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34102-LOC_Os03g34120|LOC_Os03g34102-LOC_Os03g34120|intergenic_region|LOC_Os03g34102-LOC_Os03g34120|||n.19435700C>A|||||| GT ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2778 3 19435878 SNP-3.19434388. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34102-LOC_Os03g34120|LOC_Os03g34102-LOC_Os03g34120|intergenic_region|LOC_Os03g34102-LOC_Os03g34120|||n.19435878C>A|||||| GT 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 ./. ./. ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2779 3 19436097 SNP-3.19434607. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34102-LOC_Os03g34120|LOC_Os03g34102-LOC_Os03g34120|intergenic_region|LOC_Os03g34102-LOC_Os03g34120|||n.19436097C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2780 3 19437591 SNP-3.19436101. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34102-LOC_Os03g34120|LOC_Os03g34102-LOC_Os03g34120|intergenic_region|LOC_Os03g34102-LOC_Os03g34120|||n.19437591C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2781 3 19439640 SNP-3.19438150. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34102-LOC_Os03g34120|LOC_Os03g34102-LOC_Os03g34120|intergenic_region|LOC_Os03g34102-LOC_Os03g34120|||n.19439640C>A|||||| GT 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 ./. 0/1 ./. ./. 0/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2782 3 19448247 SNP-3.19446757. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g34140|LOC_Os03g34140|transcript|LOC_Os03g34140.1|protein_coding|1/5|c.89G>T|p.His30Leu|89/1215|89/1215|30/404||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2783 3 19450614 SNP-3.19449124. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34140-LOC_Os03g34150|LOC_Os03g34140-LOC_Os03g34150|intergenic_region|LOC_Os03g34140-LOC_Os03g34150|||n.19450614A>G|||||| GT 0/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2784 3 19452826 SNP-3.19451336. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g34150|LOC_Os03g34150|transcript|LOC_Os03g34150.1|protein_coding|2/2|c.381C>A|p.Ala127Ala|381/945|381/945|127/314|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2785 3 19452836 SNP-3.19451346. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g34150|LOC_Os03g34150|transcript|LOC_Os03g34150.1|protein_coding|2/2|c.391C>A|p.Val131Ile|391/945|391/945|131/314||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2786 3 19453291 SNP-3.19451801. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g34150|LOC_Os03g34150|transcript|LOC_Os03g34150.1|protein_coding|2/2|c.846C>A|p.Asp282Glu|846/945|846/945|282/314||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2787 3 19453506 SNP-3.19452016. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34150-LOC_Os03g34160|LOC_Os03g34150-LOC_Os03g34160|intergenic_region|LOC_Os03g34150-LOC_Os03g34160|||n.19453506C>A|||||| GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2788 3 19454317 SNP-3.19452827. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34150-LOC_Os03g34160|LOC_Os03g34150-LOC_Os03g34160|intergenic_region|LOC_Os03g34150-LOC_Os03g34160|||n.19454317C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 ./. 0/1 1/1 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2789 3 19454570 SNP-3.19453080. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g34160|LOC_Os03g34160|transcript|LOC_Os03g34160.1|protein_coding|2/2|c.209T>C|p.Trp70Ser|209/243|209/243|70/80||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/1 0/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2790 3 19458144 SNP-3.19456654. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g34170|LOC_Os03g34170|transcript|LOC_Os03g34170.1|protein_coding|2/2|c.1078G>T|p.Gly360*|1078/1167|1078/1167|360/388|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2791 3 19458371 SNP-3.19456881. C A . . PR;ANN=A|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g34170|LOC_Os03g34170|transcript|LOC_Os03g34170.1|protein_coding|1/1|c.853-2G>T||||||;LOF=(LOC_Os03g34170|LOC_Os03g34170|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2792 3 19459022 SNP-3.19457532. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g34170|LOC_Os03g34170|transcript|LOC_Os03g34170.1|protein_coding|1/2|c.848T>C|p.Ser283Thr|848/1167|848/1167|283/388||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2793 3 19459428 SNP-3.19457938. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g34170|LOC_Os03g34170|transcript|LOC_Os03g34170.1|protein_coding|1/2|c.442G>T|p.Tyr148Tyr|442/1167|442/1167|148/388||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2794 3 19459557 SNP-3.19458067. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g34170|LOC_Os03g34170|transcript|LOC_Os03g34170.1|protein_coding|1/2|c.313T>C|p.Val105Leu|313/1167|313/1167|105/388||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2795 3 19459649 SNP-3.19458159. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g34170|LOC_Os03g34170|transcript|LOC_Os03g34170.1|protein_coding|1/2|c.221G>T|p.Ile74Ile|221/1167|221/1167|74/388||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2796 3 19460831 SNP-3.19459341. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34170-LOC_Os03g34180|LOC_Os03g34170-LOC_Os03g34180|intergenic_region|LOC_Os03g34170-LOC_Os03g34180|||n.19460831C>A|||||| GT 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
diff
changeset
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2797 3 19461049 SNP-3.19459559. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34170-LOC_Os03g34180|LOC_Os03g34170-LOC_Os03g34180|intergenic_region|LOC_Os03g34170-LOC_Os03g34180|||n.19461049A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2798 3 19462836 SNP-3.19461346. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g34180|LOC_Os03g34180|transcript|LOC_Os03g34180.1|protein_coding|5/5|c.543C>A|p.Lys181Lys|543/858|543/858|181/285||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2799 3 19463025 SNP-3.19461535. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g34180|LOC_Os03g34180|transcript|LOC_Os03g34180.1|protein_coding|5/5|c.732C>A|p.Phe244Leu|732/858|732/858|244/285||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2800 3 19463104 SNP-3.19461614. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g34180|LOC_Os03g34180|transcript|LOC_Os03g34180.1|protein_coding|5/5|c.811A>G|p.Lys271Glu|811/858|811/858|271/285|| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2801 3 19476117 SNP-3.19474627. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g34200|LOC_Os03g34200|transcript|LOC_Os03g34200.1|protein_coding|4/4|c.436+118C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2802 3 19477391 SNP-3.19475901. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34200-LOC_Os03g34210|LOC_Os03g34200-LOC_Os03g34210|intergenic_region|LOC_Os03g34200-LOC_Os03g34210|||n.19477391A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2803 3 19478609 SNP-3.19477119. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34200-LOC_Os03g34210|LOC_Os03g34200-LOC_Os03g34210|intergenic_region|LOC_Os03g34200-LOC_Os03g34210|||n.19478609C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2804 3 19480097 SNP-3.19478607. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g34210|LOC_Os03g34210|transcript|LOC_Os03g34210.1|protein_coding|2/4|c.355+468C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 |
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2805 3 19482708 SNP-3.19481218. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19482708A>G|||||| GT 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 0/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 0/1 0/0 1/1 ./. ./. 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/1 1/1 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 ./. ./. ./. 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2806 3 19483515 SNP-3.19482025. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19483515C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2807 3 19483872 SNP-3.19482382. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19483872C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2808 3 19483955 SNP-3.19482465. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19483955A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/1 0/1 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2809 3 19484593 SNP-3.19483103. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19484593C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. ./. 0/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2810 3 19485735 SNP-3.19484245. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19485735C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2811 3 19486781 SNP-3.19485291. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19486781C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2812 3 19488301 SNP-3.19486811. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19488301A>G|||||| GT ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2813 3 19488438 SNP-3.19486948. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19488438A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2814 3 19488488 SNP-3.19486998. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34210-LOC_Os03g34220|LOC_Os03g34210-LOC_Os03g34220|intergenic_region|LOC_Os03g34210-LOC_Os03g34220|||n.19488488C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. 0/1 0/1 0/1 0/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2815 3 19490479 SNP-3.19488989. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g34220|LOC_Os03g34220|transcript|LOC_Os03g34220.1|protein_coding|2/3|c.240+14G>T|||||| GT ./. 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2816 3 19491182 SNP-3.19489692. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34220-LOC_Os03g34230|LOC_Os03g34220-LOC_Os03g34230|intergenic_region|LOC_Os03g34220-LOC_Os03g34230|||n.19491182A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2817 3 19491464 SNP-3.19489974. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34220-LOC_Os03g34230|LOC_Os03g34220-LOC_Os03g34230|intergenic_region|LOC_Os03g34220-LOC_Os03g34230|||n.19491464C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2818 3 19491625 SNP-3.19490135. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34220-LOC_Os03g34230|LOC_Os03g34220-LOC_Os03g34230|intergenic_region|LOC_Os03g34220-LOC_Os03g34230|||n.19491625C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2819 3 19497929 SNP-3.19496439. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g34240|LOC_Os03g34240|transcript|LOC_Os03g34240.1|protein_coding|1/1|c.2070+30C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2820 3 19508441 SNP-3.19506951. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g34270|LOC_Os03g34270|transcript|LOC_Os03g34270.1|protein_coding|2/5|c.1579G>T|p.Arg527Cys|1579/2796|1579/2796|527/931||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. 0/0 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2821 3 19511582 SNP-3.19510092. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34270-LOC_Os03g34280|LOC_Os03g34270-LOC_Os03g34280|intergenic_region|LOC_Os03g34270-LOC_Os03g34280|||n.19511582A>G|||||| GT ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2822 3 19516921 SNP-3.19515431. C A . . PR;ANN=A|stop_gained&splice_region_variant|HIGH|LOC_Os03g34290|LOC_Os03g34290|transcript|LOC_Os03g34290.1|protein_coding|2/4|c.265G>T|p.Glu89*|265/531|265/531|89/176||;LOF=(LOC_Os03g34290|LOC_Os03g34290|1|1.00);NMD=(LOC_Os03g34290|LOC_Os03g34290|1|1.00) GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2823 3 19517647 SNP-3.19516157. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34290-LOC_Os03g34300|LOC_Os03g34290-LOC_Os03g34300|intergenic_region|LOC_Os03g34290-LOC_Os03g34300|||n.19517647C>A|||||| GT 0/0 1/1 0/0 1/1 0/1 0/0 0/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2824 3 19517760 SNP-3.19516270. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34290-LOC_Os03g34300|LOC_Os03g34290-LOC_Os03g34300|intergenic_region|LOC_Os03g34290-LOC_Os03g34300|||n.19517760C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2825 3 19518179 SNP-3.19516689. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34290-LOC_Os03g34300|LOC_Os03g34290-LOC_Os03g34300|intergenic_region|LOC_Os03g34290-LOC_Os03g34300|||n.19518179C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/1 ./. 0/1 0/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2826 3 19518782 SNP-3.19517292. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34290-LOC_Os03g34300|LOC_Os03g34290-LOC_Os03g34300|intergenic_region|LOC_Os03g34290-LOC_Os03g34300|||n.19518782A>G|||||| GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 0/0 1/1 0/1 0/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/1 0/0 0/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2827 3 19525732 SNP-3.19524242. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g34300|LOC_Os03g34300|transcript|LOC_Os03g34300.1|protein_coding|1/6|c.130G>T|p.Ile44Leu|216/1568|130/1254|44/417||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g34300|LOC_Os03g34300|transcript|LOC_Os03g34300.2|protein_coding|1/6|c.130G>T|p.Ile44Leu|216/1433|130/1119|44/372||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2828 3 19526547 SNP-3.19525057. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34300-LOC_Os03g34310|LOC_Os03g34300-LOC_Os03g34310|intergenic_region|LOC_Os03g34300-LOC_Os03g34310|||n.19526547A>G|||||| GT 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/1 ./. ./. 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2829 3 19526749 SNP-3.19525259. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34300-LOC_Os03g34310|LOC_Os03g34300-LOC_Os03g34310|intergenic_region|LOC_Os03g34300-LOC_Os03g34310|||n.19526749C>A|||||| GT ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
2830 3 19529334 SNP-3.19527844. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.5|protein_coding|1/2|c.*772A>G|||||772|WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.4|protein_coding|2/5|c.*226A>G|||||226|WARNING_REF_DOES_NOT_MATCH_GENOME,G|intron_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.1|protein_coding|2/5|c.460-61A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.6|protein_coding|1/5|c.417-61A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.2|protein_coding|2/6|c.460-61A>G||||||,G|intron_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.3|protein_coding|1/4|c.417-61A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
2831 3 19530150 SNP-3.19528660. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.1|protein_coding|3/6|c.*447C>A|||||447|,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.6|protein_coding|3/6|c.*80C>A|||||80|,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.5|protein_coding|1/2|c.*1588C>A|||||1588|,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.2|protein_coding|4/7|c.*39C>A|||||39|,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.3|protein_coding|2/5|c.*629C>A|||||629|,A|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.4|protein_coding|2/5|c.*1042C>A|||||1042| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
2832 3 19530426 SNP-3.19528936. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.5|protein_coding|1/2|c.*1864C>A|||||1864|WARNING_REF_DOES_NOT_MATCH_GENOME,A|intron_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.1|protein_coding|3/5|c.*549+174C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.6|protein_coding|3/5|c.*182+174C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.2|protein_coding|4/6|c.*141+174C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.3|protein_coding|2/4|c.*731+174C>A||||||,A|intron_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.4|protein_coding|2/4|c.*1144+174C>A|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/1 ./. ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
2833 3 19531487 SNP-3.19529997. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.1|protein_coding|6/6|c.*1001A>G|||||1784|,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.6|protein_coding|6/6|c.*634A>G|||||1417|,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.5|protein_coding|2/2|c.*2673A>G|||||2925|,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.2|protein_coding|7/7|c.*593A>G|||||1376|,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.3|protein_coding|5/5|c.*1183A>G|||||1966|,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g34310|LOC_Os03g34310|transcript|LOC_Os03g34310.4|protein_coding|5/5|c.*1596A>G|||||2379| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
|
2834 3 19531818 SNP-3.19530328. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34310-LOC_Os03g34320|LOC_Os03g34310-LOC_Os03g34320|intergenic_region|LOC_Os03g34310-LOC_Os03g34320|||n.19531818C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2835 3 19532303 SNP-3.19530813. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34310-LOC_Os03g34320|LOC_Os03g34310-LOC_Os03g34320|intergenic_region|LOC_Os03g34310-LOC_Os03g34320|||n.19532303A>G|||||| GT 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2836 3 19532340 SNP-3.19530850. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34310-LOC_Os03g34320|LOC_Os03g34310-LOC_Os03g34320|intergenic_region|LOC_Os03g34310-LOC_Os03g34320|||n.19532340A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 |
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2837 3 19532597 SNP-3.19531107. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g34310-LOC_Os03g34320|LOC_Os03g34310-LOC_Os03g34320|intergenic_region|LOC_Os03g34310-LOC_Os03g34320|||n.19532597A>G|||||| GT 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 ./. 1/1 0/1 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 ./. ./. ./. 1/1 0/1 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/1 1/1 0/1 ./. 1/1 0/1 0/0 0/1 1/1 1/1 0/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 ./. 0/1 1/1 ./. 1/1 ./. 1/1 0/1 0/0 0/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 1/1 ./. 0/1 ./. ./. ./. ./. ./. 0/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/1 0/0 1/1 |
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2838 3 19536512 SNP-3.19535022. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g34320|LOC_Os03g34320|transcript|LOC_Os03g34320.1|protein_coding|2/2|c.354+12G>T|||||| GT ./. 1/1 ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/1 ./. 0/1 0/0 ./. 0/0 0/0 ./. ./. ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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2839 3 19538465 SNP-3.19536975. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34320-LOC_Os03g35326|LOC_Os03g34320-LOC_Os03g35326|intergenic_region|LOC_Os03g34320-LOC_Os03g35326|||n.19538465C>A|||||| GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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2840 3 19543078 SNP-3.19541588. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g34320-LOC_Os03g35326|LOC_Os03g34320-LOC_Os03g35326|intergenic_region|LOC_Os03g34320-LOC_Os03g35326|||n.19543078C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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2841 3 19570108 SNP-3.19568618. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35330|LOC_Os03g35330|transcript|LOC_Os03g35330.1|protein_coding|1/2|c.339G>T|p.Phe113Phe|339/1623|339/1623|113/540||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/1 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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2842 3 19580263 SNP-3.19578773. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35330-LOC_Os03g35340|LOC_Os03g35330-LOC_Os03g35340|intergenic_region|LOC_Os03g35330-LOC_Os03g35340|||n.19580263A>G|||||| GT 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 0/1 0/1 1/1 ./. 0/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. ./. 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 ./. 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/1 1/1 0/1 0/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 |
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2843 3 19580733 SNP-3.19579243. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35330-LOC_Os03g35340|LOC_Os03g35330-LOC_Os03g35340|intergenic_region|LOC_Os03g35330-LOC_Os03g35340|||n.19580733C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/1 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/1 1/1 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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2844 3 19581039 SNP-3.19579549. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35330-LOC_Os03g35340|LOC_Os03g35330-LOC_Os03g35340|intergenic_region|LOC_Os03g35330-LOC_Os03g35340|||n.19581039A>G|||||| GT ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 |
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2845 3 19587166 SNP-3.19585676. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35340|LOC_Os03g35340|transcript|LOC_Os03g35340.1|protein_coding|26/29|c.5360G>T|p.Arg1787Leu|5360/6746|5360/6387|1787/2128|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2846 3 19588936 SNP-3.19587446. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35340|LOC_Os03g35340|transcript|LOC_Os03g35340.1|protein_coding|24/28|c.3954-296G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/1 0/0 0/0 ./. 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2847 3 19595062 SNP-3.19593572. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35340|LOC_Os03g35340|transcript|LOC_Os03g35340.1|protein_coding|13/29|c.1896T>C|p.Ser632Ser|1896/6746|1896/6387|632/2128||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2848 3 19596740 SNP-3.19595250. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35340|LOC_Os03g35340|transcript|LOC_Os03g35340.1|protein_coding|10/28|c.1600+87G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2849 3 19596996 SNP-3.19595506. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g35340|LOC_Os03g35340|transcript|LOC_Os03g35340.1|protein_coding|9/28|c.1559-128T>C|||||| GT 0/0 0/1 1/1 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2850 3 19601864 SNP-3.19600374. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35340|LOC_Os03g35340|transcript|LOC_Os03g35340.1|protein_coding|4/28|c.360+255G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2851 3 19605197 SNP-3.19603707. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35340-LOC_Os03g35350|LOC_Os03g35340-LOC_Os03g35350|intergenic_region|LOC_Os03g35340-LOC_Os03g35350|||n.19605197C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2852 3 19605762 SNP-3.19604272. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35350-LOC_Os03g35360|LOC_Os03g35350-LOC_Os03g35360|intergenic_region|LOC_Os03g35350-LOC_Os03g35360|||n.19605762C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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2853 3 19606910 SNP-3.19605420. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35350-LOC_Os03g35360|LOC_Os03g35350-LOC_Os03g35360|intergenic_region|LOC_Os03g35350-LOC_Os03g35360|||n.19606910C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2854 3 19607249 SNP-3.19605759. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35350-LOC_Os03g35360|LOC_Os03g35350-LOC_Os03g35360|intergenic_region|LOC_Os03g35350-LOC_Os03g35360|||n.19607249A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2855 3 19610709 SNP-3.19609219. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35350-LOC_Os03g35360|LOC_Os03g35350-LOC_Os03g35360|intergenic_region|LOC_Os03g35350-LOC_Os03g35360|||n.19610709C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/1 1/1 ./. ./. 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2856 3 19611179 SNP-3.19609689. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35350-LOC_Os03g35360|LOC_Os03g35350-LOC_Os03g35360|intergenic_region|LOC_Os03g35350-LOC_Os03g35360|||n.19611179C>A|||||| GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2857 3 19612474 SNP-3.19610984. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35350-LOC_Os03g35360|LOC_Os03g35350-LOC_Os03g35360|intergenic_region|LOC_Os03g35350-LOC_Os03g35360|||n.19612474C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2858 3 19614779 SNP-3.19613289. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35360-LOC_Os03g35370|LOC_Os03g35360-LOC_Os03g35370|intergenic_region|LOC_Os03g35360-LOC_Os03g35370|||n.19614779A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2859 3 19615499 SNP-3.19614009. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35370|LOC_Os03g35370|transcript|LOC_Os03g35370.1|protein_coding|1/1|c.106-49G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2860 3 19616179 SNP-3.19614689. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g35370|LOC_Os03g35370|transcript|LOC_Os03g35370.1|protein_coding|1/1|c.105+361T>C|||||| GT 0/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/1 ./. 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/1 1/1 0/0 0/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 ./. ./. 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2861 3 19616877 SNP-3.19615387. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35370-LOC_Os03g35380|LOC_Os03g35370-LOC_Os03g35380|intergenic_region|LOC_Os03g35370-LOC_Os03g35380|||n.19616877C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2862 3 19616878 SNP-3.19615388. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35370-LOC_Os03g35380|LOC_Os03g35370-LOC_Os03g35380|intergenic_region|LOC_Os03g35370-LOC_Os03g35380|||n.19616878C>A|||||| GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/1 1/1 0/1 ./. ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2863 3 19618127 SNP-3.19616637. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35380|LOC_Os03g35380|transcript|LOC_Os03g35380.1|protein_coding|2/4|c.881A>G|p.Ser294Ser|881/3087|881/3087|294/1028||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. ./. 1/1 0/0 ./. ./. 0/0 ./. ./. ./. 1/1 ./. ./. ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2864 3 19618567 SNP-3.19617077. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35380|LOC_Os03g35380|transcript|LOC_Os03g35380.1|protein_coding|2/4|c.1321C>A|p.Pro441Thr|1321/3087|1321/3087|441/1028|| GT 0/0 1/1 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2865 3 19623746 SNP-3.19622256. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35390|LOC_Os03g35390|transcript|LOC_Os03g35390.1|protein_coding|4/4|c.3246G>T|p.Thr1082Thr|3246/5727|3246/5727|1082/1908|| GT 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 ./. 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2866 3 19627672 SNP-3.19626182. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35390-LOC_Os03g35400|LOC_Os03g35390-LOC_Os03g35400|intergenic_region|LOC_Os03g35390-LOC_Os03g35400|||n.19627672A>G|||||| GT 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. ./. ./. 0/0 ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2867 3 19628617 SNP-3.19627127. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35390-LOC_Os03g35400|LOC_Os03g35390-LOC_Os03g35400|intergenic_region|LOC_Os03g35390-LOC_Os03g35400|||n.19628617A>G|||||| GT 0/0 0/0 1/1 0/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2868 3 19629736 SNP-3.19628246. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35390-LOC_Os03g35400|LOC_Os03g35390-LOC_Os03g35400|intergenic_region|LOC_Os03g35390-LOC_Os03g35400|||n.19629736C>A|||||| GT ./. 1/1 0/0 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 ./. 0/1 0/1 0/1 1/1 0/0 0/1 1/1 ./. 0/1 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. ./. 0/0 0/1 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/1 ./. 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2869 3 19630493 SNP-3.19629003. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35400|LOC_Os03g35400|transcript|LOC_Os03g35400.1|protein_coding|8/9|c.1121T>C|p.Arg374Pro|1121/1653|1121/1653|374/550||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2870 3 19630519 SNP-3.19629029. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35400|LOC_Os03g35400|transcript|LOC_Os03g35400.1|protein_coding|8/9|c.1095G>T|p.Asn365Asn|1095/1653|1095/1653|365/550||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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2871 3 19630572 SNP-3.19629082. C A . . PR;ANN=A|splice_region_variant&intron_variant|LOW|LOC_Os03g35400|LOC_Os03g35400|transcript|LOC_Os03g35400.1|protein_coding|7/8|c.1048-6G>T|||||| GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2872 3 19631305 SNP-3.19629815. C A . . PR;ANN=A|splice_acceptor_variant&intron_variant|HIGH|LOC_Os03g35400|LOC_Os03g35400|transcript|LOC_Os03g35400.1|protein_coding|4/8|c.644-2G>T||||||;LOF=(LOC_Os03g35400|LOC_Os03g35400|1|1.00) GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 ./. 0/0 0/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2873 3 19632687 SNP-3.19631197. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35400|LOC_Os03g35400|transcript|LOC_Os03g35400.1|protein_coding|1/9|c.24G>T|p.Ile8Ile|24/1653|24/1653|8/550||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2874 3 19632711 SNP-3.19631221. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35400-LOC_Os03g35420|LOC_Os03g35400-LOC_Os03g35420|intergenic_region|LOC_Os03g35400-LOC_Os03g35420|||n.19632711A>G|||||| GT 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2875 3 19636067 SNP-3.19634577. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35400-LOC_Os03g35420|LOC_Os03g35400-LOC_Os03g35420|intergenic_region|LOC_Os03g35400-LOC_Os03g35420|||n.19636067C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2876 3 19638983 SNP-3.19637493. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35400-LOC_Os03g35420|LOC_Os03g35400-LOC_Os03g35420|intergenic_region|LOC_Os03g35400-LOC_Os03g35420|||n.19638983C>A|||||| GT 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2877 3 19643016 SNP-3.19641526. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35430|LOC_Os03g35430|transcript|LOC_Os03g35430.1|protein_coding|2/2|c.4070G>T|p.Ile1357Ile|4070/4311|4070/4311|1357/1436||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/1 ./. ./. ./. ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. ./. 0/1 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2878 3 19652068 SNP-3.19650578. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35440-LOC_Os03g35454|LOC_Os03g35440-LOC_Os03g35454|intergenic_region|LOC_Os03g35440-LOC_Os03g35454|||n.19652068A>G|||||| GT 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. 0/1 0/0 ./. ./. 1/1 0/0 ./. ./. ./. 1/1 0/1 0/0 1/1 ./. ./. 0/0 0/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/1 0/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/1 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. ./. ./. 0/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2879 3 19654407 SNP-3.19652917. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35440-LOC_Os03g35454|LOC_Os03g35440-LOC_Os03g35454|intergenic_region|LOC_Os03g35440-LOC_Os03g35454|||n.19654407C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 ./. 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 0/0 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2880 3 19654713 SNP-3.19653223. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35440-LOC_Os03g35454|LOC_Os03g35440-LOC_Os03g35454|intergenic_region|LOC_Os03g35440-LOC_Os03g35454|||n.19654713C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2881 3 19656074 SNP-3.19654584. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35454|LOC_Os03g35454|transcript|LOC_Os03g35454.1|protein_coding|11/11|c.3580G>T|p.Thr1194Ser|3580/3633|3580/3633|1194/1210||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2882 3 19656332 SNP-3.19654842. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35454|LOC_Os03g35454|transcript|LOC_Os03g35454.1|protein_coding|11/11|c.3322G>T|p.Gly1108Trp|3322/3633|3322/3633|1108/1210|| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2883 3 19656379 SNP-3.19654889. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35454|LOC_Os03g35454|transcript|LOC_Os03g35454.1|protein_coding|11/11|c.3275G>T|p.Leu1092Leu|3275/3633|3275/3633|1092/1210||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2884 3 19657351 SNP-3.19655861. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35454|LOC_Os03g35454|transcript|LOC_Os03g35454.1|protein_coding|10/10|c.3028+119G>T|||||| GT 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2885 3 19664349 SNP-3.19662859. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g35454|LOC_Os03g35454|transcript|LOC_Os03g35454.1|protein_coding|1/10|c.188+926T>C|||||| GT 0/0 0/0 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2886 3 19665188 SNP-3.19663698. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35454|LOC_Os03g35454|transcript|LOC_Os03g35454.1|protein_coding|1/10|c.188+87G>T|||||| GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. ./. ./. 1/1 0/0 1/1 0/0 ./. 0/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2887 3 19665222 SNP-3.19663732. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35454|LOC_Os03g35454|transcript|LOC_Os03g35454.1|protein_coding|1/10|c.188+53G>T|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2888 3 19667063 SNP-3.19665573. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35454-LOC_Os03g35470|LOC_Os03g35454-LOC_Os03g35470|intergenic_region|LOC_Os03g35454-LOC_Os03g35470|||n.19667063C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2889 3 19667335 SNP-3.19665845. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35454-LOC_Os03g35470|LOC_Os03g35454-LOC_Os03g35470|intergenic_region|LOC_Os03g35454-LOC_Os03g35470|||n.19667335A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/1 0/1 1/1 1/1 0/1 0/0 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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2890 3 19667669 SNP-3.19666179. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g35470|LOC_Os03g35470|transcript|LOC_Os03g35470.1|protein_coding|1/1|c.101C>A|p.Ser34*|101/381|101/381|34/126|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 |
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2891 3 19668515 SNP-3.19667025. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35470-LOC_Os03g35480|LOC_Os03g35470-LOC_Os03g35480|intergenic_region|LOC_Os03g35470-LOC_Os03g35480|||n.19668515A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. ./. 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2892 3 19671820 SNP-3.19670330. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35480|LOC_Os03g35480|transcript|LOC_Os03g35480.1|protein_coding|3/3|c.1812A>G|p.Ile604Met|1812/2094|1812/2094|604/697||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/1 1/1 ./. 0/1 ./. 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/1 1/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 1/1 0/1 0/0 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/1 0/1 ./. 0/1 0/0 ./. 0/0 0/1 1/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/1 0/0 1/1 ./. 1/1 |
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2893 3 19672105 SNP-3.19670615. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35480-LOC_Os03g35490|LOC_Os03g35480-LOC_Os03g35490|intergenic_region|LOC_Os03g35480-LOC_Os03g35490|||n.19672105C>A|||||| GT ./. ./. 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/1 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. ./. ./. ./. 0/0 |
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2894 3 19672425 SNP-3.19670935. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35480-LOC_Os03g35490|LOC_Os03g35480-LOC_Os03g35490|intergenic_region|LOC_Os03g35480-LOC_Os03g35490|||n.19672425A>G|||||| GT 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2895 3 19672940 SNP-3.19671450. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35480-LOC_Os03g35490|LOC_Os03g35480-LOC_Os03g35490|intergenic_region|LOC_Os03g35480-LOC_Os03g35490|||n.19672940C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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2896 3 19680398 SNP-3.19678908. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35500|LOC_Os03g35500|transcript|LOC_Os03g35500.1|protein_coding|3/3|c.373A>G|p.Gly125Gly|373/480|373/480|125/159||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2897 3 19684618 SNP-3.19683128. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35510-LOC_Os03g35520|LOC_Os03g35510-LOC_Os03g35520|intergenic_region|LOC_Os03g35510-LOC_Os03g35520|||n.19684618C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 0/1 0/1 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 |
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2898 3 19684739 SNP-3.19683249. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35510-LOC_Os03g35520|LOC_Os03g35510-LOC_Os03g35520|intergenic_region|LOC_Os03g35510-LOC_Os03g35520|||n.19684739C>A|||||| GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/1 ./. 0/1 0/0 0/1 0/1 0/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2899 3 19686461 SNP-3.19684971. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35520|LOC_Os03g35520|transcript|LOC_Os03g35520.1|protein_coding|2/2|c.106-156C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2900 3 19686821 SNP-3.19685331. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35520|LOC_Os03g35520|transcript|LOC_Os03g35520.1|protein_coding|3/3|c.310A>G|p.Gln104Glu|310/480|310/480|104/159||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. ./. ./. 0/1 0/0 0/1 0/1 0/0 ./. 1/1 ./. 1/1 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2901 3 19686986 SNP-3.19685496. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35520|LOC_Os03g35520|transcript|LOC_Os03g35520.1|protein_coding|3/3|c.475C>A|p.Val159Ile|475/480|475/480|159/159||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2902 3 19687520 SNP-3.19686030. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35520-LOC_Os03g35540|LOC_Os03g35520-LOC_Os03g35540|intergenic_region|LOC_Os03g35520-LOC_Os03g35540|||n.19687520C>A|||||| GT 0/0 1/1 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2903 3 19688121 SNP-3.19686631. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35520-LOC_Os03g35540|LOC_Os03g35520-LOC_Os03g35540|intergenic_region|LOC_Os03g35520-LOC_Os03g35540|||n.19688121C>A|||||| GT 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2904 3 19688841 SNP-3.19687351. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35520-LOC_Os03g35540|LOC_Os03g35520-LOC_Os03g35540|intergenic_region|LOC_Os03g35520-LOC_Os03g35540|||n.19688841C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2905 3 19690754 SNP-3.19689264. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35520-LOC_Os03g35540|LOC_Os03g35520-LOC_Os03g35540|intergenic_region|LOC_Os03g35520-LOC_Os03g35540|||n.19690754C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2906 3 19690846 SNP-3.19689356. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35520-LOC_Os03g35540|LOC_Os03g35520-LOC_Os03g35540|intergenic_region|LOC_Os03g35520-LOC_Os03g35540|||n.19690846A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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2907 3 19698612 SNP-3.19697122. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35540-LOC_Os03g35560|LOC_Os03g35540-LOC_Os03g35560|intergenic_region|LOC_Os03g35540-LOC_Os03g35560|||n.19698612A>G|||||| GT 0/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 1/1 0/1 ./. ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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2908 3 19702588 SNP-3.19701098. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35540-LOC_Os03g35560|LOC_Os03g35540-LOC_Os03g35560|intergenic_region|LOC_Os03g35540-LOC_Os03g35560|||n.19702588C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 |
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2909 3 19703781 SNP-3.19702291. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35540-LOC_Os03g35560|LOC_Os03g35540-LOC_Os03g35560|intergenic_region|LOC_Os03g35540-LOC_Os03g35560|||n.19703781C>A|||||| GT 0/1 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. |
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2910 3 19704698 SNP-3.19703208. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35540-LOC_Os03g35560|LOC_Os03g35540-LOC_Os03g35560|intergenic_region|LOC_Os03g35540-LOC_Os03g35560|||n.19704698A>G|||||| GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/1 ./. 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/1 0/0 0/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 |
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2911 3 19705578 SNP-3.19704088. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35540-LOC_Os03g35560|LOC_Os03g35540-LOC_Os03g35560|intergenic_region|LOC_Os03g35540-LOC_Os03g35560|||n.19705578A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/1 1/1 0/0 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 ./. 1/1 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 |
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2912 3 19707481 SNP-3.19705991. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35540-LOC_Os03g35560|LOC_Os03g35540-LOC_Os03g35560|intergenic_region|LOC_Os03g35540-LOC_Os03g35560|||n.19707481C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 |
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2913 3 19716025 SNP-3.19714535. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35560-LOC_Os03g35570|LOC_Os03g35560-LOC_Os03g35570|intergenic_region|LOC_Os03g35560-LOC_Os03g35570|||n.19716025C>A|||||| GT 0/1 1/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/1 0/0 1/1 ./. 0/0 1/1 0/0 0/1 0/1 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 |
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2914 3 19716093 SNP-3.19714603. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35560-LOC_Os03g35570|LOC_Os03g35560-LOC_Os03g35570|intergenic_region|LOC_Os03g35560-LOC_Os03g35570|||n.19716093C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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2915 3 19717564 SNP-3.19716074. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35560-LOC_Os03g35570|LOC_Os03g35560-LOC_Os03g35570|intergenic_region|LOC_Os03g35560-LOC_Os03g35570|||n.19717564C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 |
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2916 3 19717948 SNP-3.19716458. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35560-LOC_Os03g35570|LOC_Os03g35560-LOC_Os03g35570|intergenic_region|LOC_Os03g35560-LOC_Os03g35570|||n.19717948C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 ./. ./. 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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2917 3 19718204 SNP-3.19716714. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35560-LOC_Os03g35570|LOC_Os03g35560-LOC_Os03g35570|intergenic_region|LOC_Os03g35560-LOC_Os03g35570|||n.19718204C>A|||||| GT 0/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/1 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2918 3 19718527 SNP-3.19717037. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35560-LOC_Os03g35570|LOC_Os03g35560-LOC_Os03g35570|intergenic_region|LOC_Os03g35560-LOC_Os03g35570|||n.19718527C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2919 3 19718720 SNP-3.19717230. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35560-LOC_Os03g35570|LOC_Os03g35560-LOC_Os03g35570|intergenic_region|LOC_Os03g35560-LOC_Os03g35570|||n.19718720C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 ./. ./. 0/1 ./. 0/0 0/1 0/0 1/1 1/1 0/1 1/1 0/1 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2920 3 19719018 SNP-3.19717528. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35560-LOC_Os03g35570|LOC_Os03g35560-LOC_Os03g35570|intergenic_region|LOC_Os03g35560-LOC_Os03g35570|||n.19719018C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2921 3 19719052 SNP-3.19717562. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35560-LOC_Os03g35570|LOC_Os03g35560-LOC_Os03g35570|intergenic_region|LOC_Os03g35560-LOC_Os03g35570|||n.19719052C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2922 3 19720745 SNP-3.19719255. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35570|LOC_Os03g35570|transcript|LOC_Os03g35570.1|protein_coding|2/3|c.672A>G|p.Ala224Ala|672/1929|672/1929|224/642||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2923 3 19720838 SNP-3.19719348. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35570|LOC_Os03g35570|transcript|LOC_Os03g35570.1|protein_coding|2/3|c.765C>A|p.Gln255Gln|765/1929|765/1929|255/642||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 ./. 1/1 0/0 |
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2924 3 19721419 SNP-3.19719929. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35570|LOC_Os03g35570|transcript|LOC_Os03g35570.1|protein_coding|2/2|c.1291-22C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2925 3 19721460 SNP-3.19719970. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35570|LOC_Os03g35570|transcript|LOC_Os03g35570.1|protein_coding|3/3|c.1310C>A|p.Ser437Asn|1310/1929|1310/1929|437/642||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 ./. 0/0 0/0 0/1 0/1 1/1 ./. 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2926 3 19721861 SNP-3.19720371. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35570|LOC_Os03g35570|transcript|LOC_Os03g35570.1|protein_coding|3/3|c.1711A>G|p.Phe571Val|1711/1929|1711/1929|571/642||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2927 3 19721975 SNP-3.19720485. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35570|LOC_Os03g35570|transcript|LOC_Os03g35570.1|protein_coding|3/3|c.1825C>A|p.Ser609Ser|1825/1929|1825/1929|609/642||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2928 3 19722889 SNP-3.19721399. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35570-LOC_Os03g35580|LOC_Os03g35570-LOC_Os03g35580|intergenic_region|LOC_Os03g35570-LOC_Os03g35580|||n.19722889C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2929 3 19723107 SNP-3.19721617. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35570-LOC_Os03g35580|LOC_Os03g35570-LOC_Os03g35580|intergenic_region|LOC_Os03g35570-LOC_Os03g35580|||n.19723107A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2930 3 19723127 SNP-3.19721637. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35570-LOC_Os03g35580|LOC_Os03g35570-LOC_Os03g35580|intergenic_region|LOC_Os03g35570-LOC_Os03g35580|||n.19723127C>A|||||| GT 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2931 3 19723998 SNP-3.19722508. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35580|LOC_Os03g35580|transcript|LOC_Os03g35580.1|protein_coding|3/3|c.1260T>C|p.Glu420Asp|1260/1494|1260/1494|420/497||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2932 3 19724422 SNP-3.19722932. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35580|LOC_Os03g35580|transcript|LOC_Os03g35580.1|protein_coding|3/3|c.836T>C|p.Pro279Pro|836/1494|836/1494|279/497||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2933 3 19724860 SNP-3.19723370. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35580|LOC_Os03g35580|transcript|LOC_Os03g35580.1|protein_coding|2/3|c.595T>C|p.Arg199Arg|595/1494|595/1494|199/497||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2934 3 19725751 SNP-3.19724261. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35580-LOC_Os03g35600|LOC_Os03g35580-LOC_Os03g35600|intergenic_region|LOC_Os03g35580-LOC_Os03g35600|||n.19725751A>G|||||| GT 0/1 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2935 3 19727065 SNP-3.19725575. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35600|LOC_Os03g35600|transcript|LOC_Os03g35600.1|protein_coding|1/6|c.81C>A|p.Asp27Glu|391/3117|81/2607|27/868||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/1 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/1 ./. ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/1 ./. 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 ./. 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2936 3 19727730 SNP-3.19726240. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35600|LOC_Os03g35600|transcript|LOC_Os03g35600.1|protein_coding|1/6|c.746C>A|p.Arg249Gln|1056/3117|746/2607|249/868||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2937 3 19731749 SNP-3.19730259. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35600-LOC_Os03g35610|LOC_Os03g35600-LOC_Os03g35610|intergenic_region|LOC_Os03g35600-LOC_Os03g35610|||n.19731749A>G|||||| GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2938 3 19731783 SNP-3.19730293. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35600-LOC_Os03g35610|LOC_Os03g35600-LOC_Os03g35610|intergenic_region|LOC_Os03g35600-LOC_Os03g35610|||n.19731783C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2939 3 19732132 SNP-3.19730642. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35600-LOC_Os03g35610|LOC_Os03g35600-LOC_Os03g35610|intergenic_region|LOC_Os03g35600-LOC_Os03g35610|||n.19732132C>A|||||| GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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2940 3 19734634 SNP-3.19733144. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35610-LOC_Os03g35620|LOC_Os03g35610-LOC_Os03g35620|intergenic_region|LOC_Os03g35610-LOC_Os03g35620|||n.19734634C>A|||||| GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2941 3 19735124 SNP-3.19733634. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35610-LOC_Os03g35620|LOC_Os03g35610-LOC_Os03g35620|intergenic_region|LOC_Os03g35610-LOC_Os03g35620|||n.19735124C>A|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2942 3 19735146 SNP-3.19733656. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35610-LOC_Os03g35620|LOC_Os03g35610-LOC_Os03g35620|intergenic_region|LOC_Os03g35610-LOC_Os03g35620|||n.19735146A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2943 3 19741750 SNP-3.19740260. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35640|LOC_Os03g35640|transcript|LOC_Os03g35640.1|protein_coding|4/4|c.508-571G>T|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2944 3 19744116 SNP-3.19742626. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35640-LOC_Os03g35650|LOC_Os03g35640-LOC_Os03g35650|intergenic_region|LOC_Os03g35640-LOC_Os03g35650|||n.19744116C>A|||||| GT ./. 1/1 ./. 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2945 3 19744886 SNP-3.19743396. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35640-LOC_Os03g35650|LOC_Os03g35640-LOC_Os03g35650|intergenic_region|LOC_Os03g35640-LOC_Os03g35650|||n.19744886A>G|||||| GT ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. ./. 1/1 0/0 ./. ./. ./. ./. ./. 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2946 3 19747751 SNP-3.19746261. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35650|LOC_Os03g35650|transcript|LOC_Os03g35650.1|protein_coding|2/2|c.112-457C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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2947 3 19747918 SNP-3.19746428. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35650|LOC_Os03g35650|transcript|LOC_Os03g35650.1|protein_coding|2/2|c.112-290C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2948 3 19751038 SNP-3.19749548. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35650-LOC_Os03g35670|LOC_Os03g35650-LOC_Os03g35670|intergenic_region|LOC_Os03g35650-LOC_Os03g35670|||n.19751038C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2949 3 19762971 SNP-3.19761481. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35670-LOC_Os03g35690|LOC_Os03g35670-LOC_Os03g35690|intergenic_region|LOC_Os03g35670-LOC_Os03g35690|||n.19762971A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 |
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2950 3 19763222 SNP-3.19761732. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35670-LOC_Os03g35690|LOC_Os03g35670-LOC_Os03g35690|intergenic_region|LOC_Os03g35670-LOC_Os03g35690|||n.19763222A>G|||||| GT 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. ./. 0/1 ./. 1/1 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2951 3 19764705 SNP-3.19763215. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35670-LOC_Os03g35690|LOC_Os03g35670-LOC_Os03g35690|intergenic_region|LOC_Os03g35670-LOC_Os03g35690|||n.19764705C>A|||||| GT 0/1 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2952 3 19765552 SNP-3.19764062. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35670-LOC_Os03g35690|LOC_Os03g35670-LOC_Os03g35690|intergenic_region|LOC_Os03g35670-LOC_Os03g35690|||n.19765552A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 ./. ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 1/1 ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2953 3 19766171 SNP-3.19764681. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35670-LOC_Os03g35690|LOC_Os03g35670-LOC_Os03g35690|intergenic_region|LOC_Os03g35670-LOC_Os03g35690|||n.19766171C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2954 3 19767442 SNP-3.19765952. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35690|LOC_Os03g35690|transcript|LOC_Os03g35690.1|protein_coding|2/4|c.355C>A|p.Leu119Met|355/2397|355/2397|119/798||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2955 3 19770398 SNP-3.19768908. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35690-LOC_Os03g35700|LOC_Os03g35690-LOC_Os03g35700|intergenic_region|LOC_Os03g35690-LOC_Os03g35700|||n.19770398C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2956 3 19777683 SNP-3.19776193. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35710|LOC_Os03g35710|transcript|LOC_Os03g35710.1|protein_coding|5/8|c.877T>C|p.Gln293Gln|877/1521|877/1521|293/506||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 ./. 0/1 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 ./. 0/0 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2957 3 19777886 SNP-3.19776396. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g35710|LOC_Os03g35710|transcript|LOC_Os03g35710.1|protein_coding|4/7|c.776-102T>C|||||| GT 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2958 3 19777977 SNP-3.19776487. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35710|LOC_Os03g35710|transcript|LOC_Os03g35710.1|protein_coding|4/7|c.775+26G>T|||||| GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. ./. 0/1 ./. 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 ./. 0/0 ./. 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2959 3 19778078 SNP-3.19776588. C A . . PR;ANN=A|stop_gained|HIGH|LOC_Os03g35710|LOC_Os03g35710|transcript|LOC_Os03g35710.1|protein_coding|4/8|c.700G>T|p.Glu234*|700/1521|700/1521|234/506||;LOF=(LOC_Os03g35710|LOC_Os03g35710|1|1.00);NMD=(LOC_Os03g35710|LOC_Os03g35710|1|1.00) GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. ./. 0/0 0/1 0/1 0/1 0/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/1 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/1 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 0/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2960 3 19785679 SNP-3.19784189. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g35720|LOC_Os03g35720|transcript|LOC_Os03g35720.1|protein_coding|1/1|c.885+96T>C|||||| GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. 0/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/1 0/0 0/0 ./. 0/1 ./. ./. 0/0 ./. 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 ./. 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2961 3 19786568 SNP-3.19785078. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35720|LOC_Os03g35720|transcript|LOC_Os03g35720.1|protein_coding|1/2|c.92G>T|p.Leu31Leu|92/981|92/981|31/326||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2962 3 19787590 SNP-3.19786100. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35720-LOC_Os03g35730|LOC_Os03g35720-LOC_Os03g35730|intergenic_region|LOC_Os03g35720-LOC_Os03g35730|||n.19787590C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. ./. ./. ./. 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2963 3 19788235 SNP-3.19786745. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35720-LOC_Os03g35730|LOC_Os03g35720-LOC_Os03g35730|intergenic_region|LOC_Os03g35720-LOC_Os03g35730|||n.19788235A>G|||||| GT 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2964 3 19788877 SNP-3.19787387. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35720-LOC_Os03g35730|LOC_Os03g35720-LOC_Os03g35730|intergenic_region|LOC_Os03g35720-LOC_Os03g35730|||n.19788877C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/0 ./. 1/1 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2965 3 19789181 SNP-3.19787691. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35720-LOC_Os03g35730|LOC_Os03g35720-LOC_Os03g35730|intergenic_region|LOC_Os03g35720-LOC_Os03g35730|||n.19789181C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2966 3 19790313 SNP-3.19788823. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35720-LOC_Os03g35730|LOC_Os03g35720-LOC_Os03g35730|intergenic_region|LOC_Os03g35720-LOC_Os03g35730|||n.19790313C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2967 3 19793580 SNP-3.19792090. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35720-LOC_Os03g35730|LOC_Os03g35720-LOC_Os03g35730|intergenic_region|LOC_Os03g35720-LOC_Os03g35730|||n.19793580C>A|||||| GT ./. 0/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/1 ./. 1/1 0/0 1/1 ./. 0/1 1/1 ./. 0/1 ./. 0/1 ./. 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/1 ./. ./. 1/1 0/0 ./. 0/0 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2968 3 19794579 SNP-3.19793089. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35730|LOC_Os03g35730|transcript|LOC_Os03g35730.1|protein_coding|1/6|c.153C>A|p.Gln51Gln|153/1980|153/1980|51/659||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2969 3 19795654 SNP-3.19794164. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35730|LOC_Os03g35730|transcript|LOC_Os03g35730.1|protein_coding|2/6|c.1148C>A|p.His383His|1148/1980|1148/1980|383/659||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2970 3 19796643 SNP-3.19795153. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35730|LOC_Os03g35730|transcript|LOC_Os03g35730.1|protein_coding|6/6|c.1526C>A|p.Gly509Glu|1526/1980|1526/1980|509/659||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 ./. 0/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 0/1 0/0 ./. 0/0 ./. 0/1 ./. 0/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2971 3 19796959 SNP-3.19795469. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35730|LOC_Os03g35730|transcript|LOC_Os03g35730.1|protein_coding|6/6|c.1842A>G|p.Val614Val|1842/1980|1842/1980|614/659||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2972 3 19798380 SNP-3.19796890. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35730-LOC_Os03g35740|LOC_Os03g35730-LOC_Os03g35740|intergenic_region|LOC_Os03g35730-LOC_Os03g35740|||n.19798380C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2973 3 19799905 SNP-3.19798415. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g35740|LOC_Os03g35740|transcript|LOC_Os03g35740.1|protein_coding|5/5|c.2695+46T>C|||||| GT 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/1 0/0 ./. 0/1 0/0 1/1 1/1 ./. 0/1 0/0 ./. 1/1 ./. 1/1 ./. ./. 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/1 ./. 0/0 0/1 ./. 0/1 0/1 1/1 ./. ./. 1/1 1/1 0/0 0/1 ./. ./. 0/0 0/1 0/0 0/1 0/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 1/1 0/1 1/1 0/1 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2974 3 19801185 SNP-3.19799695. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35740|LOC_Os03g35740|transcript|LOC_Os03g35740.1|protein_coding|3/6|c.1735G>T|p.Arg579Trp|1735/3459|1735/3459|579/1152||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2975 3 19805029 SNP-3.19803539. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35740-LOC_Os03g35750|LOC_Os03g35740-LOC_Os03g35750|intergenic_region|LOC_Os03g35740-LOC_Os03g35750|||n.19805029C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2976 3 19805536 SNP-3.19804046. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35740-LOC_Os03g35750|LOC_Os03g35740-LOC_Os03g35750|intergenic_region|LOC_Os03g35740-LOC_Os03g35750|||n.19805536C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 0/0 ./. 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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2977 3 19808714 SNP-3.19807224. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19808714C>A|||||| GT 0/0 0/1 0/0 ./. 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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2978 3 19810983 SNP-3.19809493. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19810983A>G|||||| GT ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 ./. ./. ./. 1/1 ./. 0/0 ./. 1/1 0/0 ./. 1/1 ./. ./. 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. ./. ./. 1/1 0/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. ./. ./. 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 |
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2979 3 19811307 SNP-3.19809817. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19811307A>G|||||| GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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2980 3 19815261 SNP-3.19813771. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19815261C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/1 ./. 0/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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2981 3 19816969 SNP-3.19815479. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19816969C>A|||||| GT 0/0 ./. 1/1 1/1 ./. 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 0/1 0/1 1/1 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/1 ./. 1/1 0/0 |
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2982 3 19821451 SNP-3.19819961. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19821451A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 1/1 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. ./. 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/0 1/1 |
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2983 3 19823020 SNP-3.19821530. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19823020A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. |
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2984 3 19825097 SNP-3.19823607. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19825097C>A|||||| GT ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. ./. 0/0 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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2985 3 19825898 SNP-3.19824408. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19825898A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/1 ./. 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/1 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2986 3 19827035 SNP-3.19825545. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19827035A>G|||||| GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2987 3 19827178 SNP-3.19825688ct. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19827178C>A|||||| GT 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2988 3 19827206 SNP-3.19825716. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19827206C>A|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2989 3 19831789 SNP-3.19830299. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19831789C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2990 3 19832788 SNP-3.19831298. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35750-LOC_Os03g35788|LOC_Os03g35750-LOC_Os03g35788|intergenic_region|LOC_Os03g35750-LOC_Os03g35788|||n.19832788C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 ./. 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/1 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2991 3 19834159 SNP-3.19832669. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35788|LOC_Os03g35788|transcript|LOC_Os03g35788.1|protein_coding|7/7|c.5300T>C|p.Gly1767Ala|5300/5724|5300/5724|1767/1907||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2992 3 19834518 SNP-3.19833028. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35788|LOC_Os03g35788|transcript|LOC_Os03g35788.1|protein_coding|7/7|c.4941G>T|p.Val1647Val|4941/5724|4941/5724|1647/1907||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2993 3 19834644 SNP-3.19833154. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35788|LOC_Os03g35788|transcript|LOC_Os03g35788.1|protein_coding|7/7|c.4815G>T|p.Thr1605Thr|4815/5724|4815/5724|1605/1907||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. ./. 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 0/0 1/1 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 0/0 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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2994 3 19834860 SNP-3.19833370. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g35788|LOC_Os03g35788|transcript|LOC_Os03g35788.1|protein_coding|6/6|c.4688-89T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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2995 3 19834876 SNP-3.19833386. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35788|LOC_Os03g35788|transcript|LOC_Os03g35788.1|protein_coding|6/6|c.4688-105G>T|||||| GT ./. 1/1 0/0 ./. 0/0 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 0/0 1/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/1 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2996 3 19835332 SNP-3.19833842. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35788|LOC_Os03g35788|transcript|LOC_Os03g35788.1|protein_coding|6/7|c.4438T>C|p.Gly1480Arg|4438/5724|4438/5724|1480/1907||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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2997 3 19836206 SNP-3.19834716. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35788|LOC_Os03g35788|transcript|LOC_Os03g35788.1|protein_coding|5/6|c.4386+204G>T|||||| GT ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/1 ./. ./. 0/0 ./. 0/1 1/1 1/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 0/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2998 3 19836924 SNP-3.19835434. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35788|LOC_Os03g35788|transcript|LOC_Os03g35788.1|protein_coding|4/6|c.4008+44G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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2999 3 19846674 SNP-3.19845184. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35810|LOC_Os03g35810|transcript|LOC_Os03g35810.1|protein_coding|2/2|c.111+19G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/1 0/1 ./. 0/1 1/1 ./. ./. 1/1 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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3000 3 19846719 SNP-3.19845229. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35810|LOC_Os03g35810|transcript|LOC_Os03g35810.1|protein_coding|2/3|c.85G>T|p.Pro29Ser|85/192|85/192|29/63||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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3001 3 19858269 SNP-3.19856779. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35840|LOC_Os03g35840|transcript|LOC_Os03g35840.1|protein_coding|5/5|c.2275-31G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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3002 3 19858450 SNP-3.19856960. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35840|LOC_Os03g35840|transcript|LOC_Os03g35840.1|protein_coding|5/6|c.2131T>C|p.Ser711Arg|2131/2328|2131/2328|711/775||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3003 3 19859491 SNP-3.19858001. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g35840|LOC_Os03g35840|transcript|LOC_Os03g35840.1|protein_coding|3/5|c.1266+83T>C|||||| GT 0/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3004 3 19860748 SNP-3.19859258. A G . . PR;ANN=G|splice_region_variant&intron_variant|LOW|LOC_Os03g35840|LOC_Os03g35840|transcript|LOC_Os03g35840.1|protein_coding|1/5|c.128-3T>C|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3005 3 19861709 SNP-3.19860219. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35840-LOC_Os03g35849|LOC_Os03g35840-LOC_Os03g35849|intergenic_region|LOC_Os03g35840-LOC_Os03g35849|||n.19861709C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 0/0 ./. 1/1 0/1 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3006 3 19862076 SNP-3.19860586. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35840-LOC_Os03g35849|LOC_Os03g35840-LOC_Os03g35849|intergenic_region|LOC_Os03g35840-LOC_Os03g35849|||n.19862076A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3007 3 19864083 SNP-3.19862593. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35840-LOC_Os03g35849|LOC_Os03g35840-LOC_Os03g35849|intergenic_region|LOC_Os03g35840-LOC_Os03g35849|||n.19864083A>G|||||| GT 0/1 0/0 0/1 0/1 ./. ./. 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/1 0/1 1/1 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 0/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3008 3 19864785 SNP-3.19863295. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g35849|LOC_Os03g35849|transcript|LOC_Os03g35849.1|protein_coding|2/2|c.*571T>C|||||689|WARNING_REF_DOES_NOT_MATCH_GENOME,G|3_prime_UTR_variant|MODIFIER|LOC_Os03g35849|LOC_Os03g35849|transcript|LOC_Os03g35849.2|protein_coding|2/2|c.*512T>C|||||689|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/1 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/1 0/0 0/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3009 3 19865578 SNP-3.19864088. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35849|LOC_Os03g35849|transcript|LOC_Os03g35849.1|protein_coding|1/2|c.247G>T|p.Thr83Ser|1663/2428|247/351|83/116||WARNING_REF_DOES_NOT_MATCH_GENOME,A|missense_variant|MODERATE|LOC_Os03g35849|LOC_Os03g35849|transcript|LOC_Os03g35849.2|protein_coding|1/2|c.247G>T|p.Thr83Ser|1663/2369|247/351|83/116||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. ./. ./. 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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3010 3 19866828 SNP-3.19865338. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g35849|LOC_Os03g35849|transcript|LOC_Os03g35849.1|protein_coding|1/2|c.-1004G>T|||||1004|WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g35849|LOC_Os03g35849|transcript|LOC_Os03g35849.2|protein_coding|1/2|c.-1004G>T|||||1004|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 ./. 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 ./. 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3011 3 19866953 SNP-3.19865463. C A . . PR;ANN=A|5_prime_UTR_variant|MODIFIER|LOC_Os03g35849|LOC_Os03g35849|transcript|LOC_Os03g35849.1|protein_coding|1/2|c.-1129G>T|||||1129|WARNING_REF_DOES_NOT_MATCH_GENOME,A|5_prime_UTR_variant|MODIFIER|LOC_Os03g35849|LOC_Os03g35849|transcript|LOC_Os03g35849.2|protein_coding|1/2|c.-1129G>T|||||1129|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 ./. 0/0 1/1 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3012 3 19868815 SNP-3.19867325. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19868815C>A|||||| GT ./. 1/1 ./. ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3013 3 19869761 SNP-3.19868271. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19869761A>G|||||| GT ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. 1/1 0/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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3014 3 19871920 SNP-3.19870430. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19871920A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3015 3 19871999 SNP-3.19870509. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19871999C>A|||||| GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 ./. 0/1 ./. ./. 1/1 0/0 0/1 ./. 0/1 ./. 0/1 ./. ./. ./. ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 1/1 ./. 0/1 ./. 0/1 1/1 1/1 0/1 0/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3016 3 19872532 SNP-3.19871042. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19872532C>A|||||| GT 0/1 1/1 0/0 1/1 0/1 ./. 0/0 1/1 1/1 1/1 0/0 1/1 0/1 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. 0/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 0/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3017 3 19873068 SNP-3.19871578. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19873068C>A|||||| GT 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3018 3 19873396 SNP-3.19871906. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19873396C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/1 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3019 3 19874408 SNP-3.19872918. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19874408C>A|||||| GT 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 ./. ./. ./. 1/1 0/1 ./. 0/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 1/1 0/1 1/1 0/1 0/1 0/0 ./. 0/0 1/1 1/1 0/1 ./. ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3020 3 19877262 SNP-3.19875772. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19877262A>G|||||| GT ./. 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3021 3 19879414 SNP-3.19877924. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19879414A>G|||||| GT 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 ./. ./. 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3022 3 19879842 SNP-3.19878352. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19879842C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 0/1 0/0 0/0 0/1 1/1 1/1 1/1 ./. 0/0 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3023 3 19880957 SNP-3.19879467. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19880957C>A|||||| GT 0/0 1/1 0/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3024 3 19881090 SNP-3.19879600. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35849-LOC_Os03g35860|LOC_Os03g35849-LOC_Os03g35860|intergenic_region|LOC_Os03g35849-LOC_Os03g35860|||n.19881090C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3025 3 19885100 SNP-3.19883610. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35860|LOC_Os03g35860|transcript|LOC_Os03g35860.1|protein_coding|1/6|c.181A>G|p.Pro61Ala|181/2049|181/2049|61/682||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3026 3 19885279 SNP-3.19883789. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35860|LOC_Os03g35860|transcript|LOC_Os03g35860.1|protein_coding|1/6|c.360C>A|p.Leu120Leu|360/2049|360/2049|120/682||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 ./. 1/1 ./. 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 1/1 1/1 0/0 ./. ./. 0/0 ./. 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 1/1 ./. 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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3027 3 19885950 SNP-3.19884460. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35860|LOC_Os03g35860|transcript|LOC_Os03g35860.1|protein_coding|1/6|c.1031C>A|p.Ile344Lys|1031/2049|1031/2049|344/682||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/1 ./. 0/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/1 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/1 0/0 1/1 0/1 1/1 0/0 0/1 1/1 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3028 3 19886370 SNP-3.19884880. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35860|LOC_Os03g35860|transcript|LOC_Os03g35860.1|protein_coding|2/6|c.1239C>A|p.Asp413Glu|1239/2049|1239/2049|413/682|| GT ./. 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3029 3 19886609 SNP-3.19885119. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35860|LOC_Os03g35860|transcript|LOC_Os03g35860.1|protein_coding|2/5|c.1381-44C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 ./. 0/1 0/1 ./. 0/1 1/1 1/1 ./. 1/1 0/1 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/1 0/0 ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3030 3 19886701 SNP-3.19885211. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35860|LOC_Os03g35860|transcript|LOC_Os03g35860.1|protein_coding|3/6|c.1429C>A|p.Ser477Thr|1429/2049|1429/2049|477/682||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 1/1 1/1 0/0 1/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 0/1 1/1 1/1 0/0 0/1 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3031 3 19887075 SNP-3.19885585. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35860|LOC_Os03g35860|transcript|LOC_Os03g35860.1|protein_coding|5/6|c.1656A>G|p.Leu552Leu|1656/2049|1656/2049|552/682|| GT 1/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3032 3 19887290 SNP-3.19885800. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35860|LOC_Os03g35860|transcript|LOC_Os03g35860.1|protein_coding|6/6|c.1827A>G|p.Arg609Arg|1827/2049|1827/2049|609/682||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 0/0 ./. ./. 0/1 0/1 0/0 ./. ./. ./. 0/1 ./. ./. 0/0 ./. ./. ./. ./. 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 ./. 1/1 0/1 1/1 ./. ./. ./. 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/0 1/1 0/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3033 3 19887468 SNP-3.19885978. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35860|LOC_Os03g35860|transcript|LOC_Os03g35860.1|protein_coding|6/6|c.2005C>A|p.Lys669Lys|2005/2049|2005/2049|669/682||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3034 3 19887739 SNP-3.19886249. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35860-LOC_Os03g35870|LOC_Os03g35860-LOC_Os03g35870|intergenic_region|LOC_Os03g35860-LOC_Os03g35870|||n.19887739C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 1/1 ./. 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
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3035 3 19887755 SNP-3.19886265. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35860-LOC_Os03g35870|LOC_Os03g35860-LOC_Os03g35870|intergenic_region|LOC_Os03g35860-LOC_Os03g35870|||n.19887755C>A|||||| GT 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3036 3 19891404 SNP-3.19889914. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35870|LOC_Os03g35870|transcript|LOC_Os03g35870.1|protein_coding|7/10|c.2831T>C|p.Pro944Pro|2831/4773|2831/4773|944/1590||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/1 0/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 0/0 0/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3037 3 19892516 SNP-3.19891026. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g35870|LOC_Os03g35870|transcript|LOC_Os03g35870.1|protein_coding|5/9|c.2062-24G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. 1/1 ./. 0/0 ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 ./. 0/0 1/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3038 3 19892740 SNP-3.19891250. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35870|LOC_Os03g35870|transcript|LOC_Os03g35870.1|protein_coding|5/10|c.1970G>T|p.Tyr657Phe|1970/4773|1970/4773|657/1590||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 ./. ./. 1/1 0/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/1 0/1 0/0 ./. 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 0/1 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3039 3 19895384 SNP-3.19893894. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35870|LOC_Os03g35870|transcript|LOC_Os03g35870.1|protein_coding|1/10|c.7T>C|p.Glu3Gln|7/4773|7/4773|3/1590||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 1/1 ./. ./. 1/1 ./. 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3040 3 19899833 SNP-3.19898343. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35870-LOC_Os03g35880|LOC_Os03g35870-LOC_Os03g35880|intergenic_region|LOC_Os03g35870-LOC_Os03g35880|||n.19899833C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 ./. ./. ./. 0/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 ./. 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3041 3 19901647 SNP-3.19900157. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35870-LOC_Os03g35880|LOC_Os03g35870-LOC_Os03g35880|intergenic_region|LOC_Os03g35870-LOC_Os03g35880|||n.19901647C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/1 0/0 ./. 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/1 ./. 0/1 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
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3042 3 19902294 SNP-3.19900804. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35880-LOC_Os03g35886|LOC_Os03g35880-LOC_Os03g35886|intergenic_region|LOC_Os03g35880-LOC_Os03g35886|||n.19902294C>A|||||| GT ./. 1/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 0/0 ./. 0/0 ./. 1/1 0/0 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3043 3 19904535 SNP-3.19903045. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g35886|LOC_Os03g35886|transcript|LOC_Os03g35886.1|protein_coding|2/2|c.*3042T>C|||||3042| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 0/0 1/1 0/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 ./. 0/0 1/1 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
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3044 3 19905964 SNP-3.19904474. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g35886|LOC_Os03g35886|transcript|LOC_Os03g35886.1|protein_coding|2/2|c.*1613G>T|||||1613| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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3045 3 19906300 SNP-3.19904810. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g35886|LOC_Os03g35886|transcript|LOC_Os03g35886.1|protein_coding|2/2|c.*1277G>T|||||1277|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 ./. 0/0 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 ./. 0/0 1/1 0/0 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3046 3 19906507 SNP-3.19905017. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g35886|LOC_Os03g35886|transcript|LOC_Os03g35886.1|protein_coding|2/2|c.*1070T>C|||||1070| GT 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. ./. 0/0 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. ./. 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 ./. |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3047 3 19906601 SNP-3.19905111. C A . . PR;ANN=A|3_prime_UTR_variant|MODIFIER|LOC_Os03g35886|LOC_Os03g35886|transcript|LOC_Os03g35886.1|protein_coding|2/2|c.*976G>T|||||976|WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. ./. ./. 1/1 ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 1/1 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 ./. ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3048 3 19906624 SNP-3.19905134. A G . . PR;ANN=G|3_prime_UTR_variant|MODIFIER|LOC_Os03g35886|LOC_Os03g35886|transcript|LOC_Os03g35886.1|protein_coding|2/2|c.*953T>C|||||953|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3049 3 19907698 SNP-3.19906208. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35886|LOC_Os03g35886|transcript|LOC_Os03g35886.1|protein_coding|2/2|c.74G>T|p.Gln25Leu|650/4339|74/195|25/64||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3050 3 19908511 SNP-3.19907021. A G . . PR;ANN=G|5_prime_UTR_variant|MODIFIER|LOC_Os03g35886|LOC_Os03g35886|transcript|LOC_Os03g35886.1|protein_coding|1/2|c.-530T>C|||||740|WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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3051 3 19908967 SNP-3.19907477. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35886-LOC_Os03g35894|LOC_Os03g35886-LOC_Os03g35894|intergenic_region|LOC_Os03g35886-LOC_Os03g35894|||n.19908967A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/1 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3052 3 19909565 SNP-3.19908075. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35886-LOC_Os03g35894|LOC_Os03g35886-LOC_Os03g35894|intergenic_region|LOC_Os03g35886-LOC_Os03g35894|||n.19909565A>G|||||| GT 1/1 0/0 0/0 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 1/1 ./. ./. 0/0 0/0 1/1 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/0 1/1 ./. 1/1 0/1 ./. ./. ./. 0/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 1/1 0/0 0/0 0/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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3053 3 19909852 SNP-3.19908362. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35886-LOC_Os03g35894|LOC_Os03g35886-LOC_Os03g35894|intergenic_region|LOC_Os03g35886-LOC_Os03g35894|||n.19909852C>A|||||| GT 0/0 ./. ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3054 3 19917770 SNP-3.19916280. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35910|LOC_Os03g35910|transcript|LOC_Os03g35910.1|protein_coding|4/4|c.1990G>T|p.Thr664Ser|1990/2076|1990/2076|664/691||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3055 3 19917982 SNP-3.19916492. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35910|LOC_Os03g35910|transcript|LOC_Os03g35910.1|protein_coding|4/4|c.1778T>C|p.Thr593Thr|1778/2076|1778/2076|593/691||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 1/1 0/0 0/1 ./. ./. 0/0 ./. 0/1 1/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/1 1/1 1/1 1/1 0/1 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 1/1 ./. 0/1 0/1 0/0 0/0 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3056 3 19918171 SNP-3.19916681. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g35910|LOC_Os03g35910|transcript|LOC_Os03g35910.1|protein_coding|4/4|c.1589G>T|p.Leu530Leu|1589/2076|1589/2076|530/691||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 1/1 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 ./. ./. 0/1 0/1 1/1 0/0 ./. 1/1 ./. 0/1 ./. ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 0/1 ./. 0/1 ./. ./. 0/0 1/1 0/1 1/1 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 ./. 1/1 ./. 0/1 1/1 1/1 1/1 1/1 ./. ./. 0/1 ./. 1/1 1/1 0/1 0/1 1/1 0/0 ./. 0/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3057 3 19918273 SNP-3.19916783. A G . . PR;ANN=G|missense_variant|MODERATE|LOC_Os03g35910|LOC_Os03g35910|transcript|LOC_Os03g35910.1|protein_coding|4/4|c.1487T>C|p.Val496Ala|1487/2076|1487/2076|496/691|| GT ./. 0/0 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. ./. ./. ./. 1/1 0/0 1/1 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. ./. 0/0 0/0 1/1 ./. 1/1 ./. ./. ./. 1/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 ./. ./. 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 ./. ./. 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3058 3 19918600 SNP-3.19917110. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35910|LOC_Os03g35910|transcript|LOC_Os03g35910.1|protein_coding|3/4|c.1226G>T|p.His409Leu|1226/2076|1226/2076|409/691||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/1 ./. 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/1 1/1 ./. 1/1 0/1 1/1 ./. 1/1 0/1 0/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3059 3 19918707 SNP-3.19917217. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35910|LOC_Os03g35910|transcript|LOC_Os03g35910.1|protein_coding|3/4|c.1119T>C|p.Thr373Thr|1119/2076|1119/2076|373/691|| GT ./. 0/0 1/1 0/0 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/0 0/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 0/1 ./. 0/0 0/1 ./. ./. ./. ./. ./. ./. ./. ./. 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/1 ./. 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 ./. 0/1 ./. 1/1 1/1 0/1 0/0 0/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 1/1 0/1 1/1 1/1 1/1 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/1 ./. 1/1 ./. 0/1 0/1 0/0 0/0 1/1 0/0 0/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 0/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3060 3 19919419 SNP-3.19917929. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35910|LOC_Os03g35910|transcript|LOC_Os03g35910.1|protein_coding|1/4|c.701G>T|p.Glu234Val|701/2076|701/2076|234/691||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 ./. 0/0 ./. 0/1 0/0 0/1 1/1 0/0 ./. ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/0 0/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
diff
changeset
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3061 3 19920044 SNP-3.19918554. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35910|LOC_Os03g35910|transcript|LOC_Os03g35910.1|protein_coding|1/4|c.76G>T|p.Ile26Phe|76/2076|76/2076|26/691||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 ./. 0/0 1/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 ./. 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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3062 3 19921742 SNP-3.19920252. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35910-LOC_Os03g35920|LOC_Os03g35910-LOC_Os03g35920|intergenic_region|LOC_Os03g35910-LOC_Os03g35920|||n.19921742C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 ./. 0/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/1 1/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/1 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3063 3 19922833 SNP-3.19921343. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35910-LOC_Os03g35920|LOC_Os03g35910-LOC_Os03g35920|intergenic_region|LOC_Os03g35910-LOC_Os03g35920|||n.19922833C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/1 ./. ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/0 ./. ./. ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 ./. 0/0 1/1 ./. 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3064 3 19922943 SNP-3.19921453. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35910-LOC_Os03g35920|LOC_Os03g35910-LOC_Os03g35920|intergenic_region|LOC_Os03g35910-LOC_Os03g35920|||n.19922943A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3065 3 19924759 SNP-3.19923269. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35910-LOC_Os03g35920|LOC_Os03g35910-LOC_Os03g35920|intergenic_region|LOC_Os03g35910-LOC_Os03g35920|||n.19924759A>G|||||| GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 ./. 0/0 ./. 0/0 0/0 ./. 1/1 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 0/0 ./. ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. 0/0 0/0 1/1 ./. 0/0 ./. 0/0 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. ./. ./. 1/1 1/1 ./. ./. ./. ./. 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3066 3 19924786 SNP-3.19923296. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35910-LOC_Os03g35920|LOC_Os03g35910-LOC_Os03g35920|intergenic_region|LOC_Os03g35910-LOC_Os03g35920|||n.19924786C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3067 3 19929387 SNP-3.19927897. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35920-LOC_Os03g35930|LOC_Os03g35920-LOC_Os03g35930|intergenic_region|LOC_Os03g35920-LOC_Os03g35930|||n.19929387C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 1/1 ./. ./. 1/1 ./. ./. 1/1 0/0 ./. 1/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 1/1 0/0 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3068 3 19929707 SNP-3.19928217. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35920-LOC_Os03g35930|LOC_Os03g35920-LOC_Os03g35930|intergenic_region|LOC_Os03g35920-LOC_Os03g35930|||n.19929707C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 ./. ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3069 3 19930698 SNP-3.19929208. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35920-LOC_Os03g35930|LOC_Os03g35920-LOC_Os03g35930|intergenic_region|LOC_Os03g35920-LOC_Os03g35930|||n.19930698A>G|||||| GT ./. 0/1 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 1/1 0/1 0/1 1/1 ./. 0/0 1/1 0/0 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3070 3 19931769 SNP-3.19930279. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35920-LOC_Os03g35930|LOC_Os03g35920-LOC_Os03g35930|intergenic_region|LOC_Os03g35920-LOC_Os03g35930|||n.19931769C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 1/1 0/1 0/1 0/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 ./. 0/0 1/1 ./. 0/1 0/1 ./. 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 ./. 0/0 0/0 ./. ./. 0/0 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3071 3 19932125 SNP-3.19930635. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35920-LOC_Os03g35930|LOC_Os03g35920-LOC_Os03g35930|intergenic_region|LOC_Os03g35920-LOC_Os03g35930|||n.19932125C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 ./. 1/1 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3072 3 19932245 SNP-3.19930755. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35920-LOC_Os03g35930|LOC_Os03g35920-LOC_Os03g35930|intergenic_region|LOC_Os03g35920-LOC_Os03g35930|||n.19932245A>G|||||| GT 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/1 ./. 1/1 ./. 0/0 ./. ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 ./. 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. ./. ./. ./. 1/1 ./. ./. 0/0 1/1 ./. ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3073 3 19935876 SNP-3.19934386. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35920-LOC_Os03g35930|LOC_Os03g35920-LOC_Os03g35930|intergenic_region|LOC_Os03g35920-LOC_Os03g35930|||n.19935876C>A|||||| GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/1 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 0/1 ./. 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3074 3 19936724 SNP-3.19935234. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35930|LOC_Os03g35930|transcript|LOC_Os03g35930.1|protein_coding|1/1|c.563C>A|p.Ala188Glu|563/789|563/789|188/262|| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 ./. 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 ./. ./. 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/1 0/1 1/1 0/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3075 3 19939524 SNP-3.19938034. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g35940|LOC_Os03g35940|transcript|LOC_Os03g35940.1|protein_coding|4/5|c.1493A>G|p.Arg498Arg|1493/1950|1493/1950|498/649||WARNING_REF_DOES_NOT_MATCH_GENOME GT ./. 0/0 1/1 0/0 0/1 ./. ./. 0/0 0/0 0/0 ./. ./. ./. ./. 0/1 0/0 1/1 ./. 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 ./. 1/1 ./. 0/1 ./. ./. ./. 0/1 0/1 0/0 1/1 1/1 0/1 ./. 1/1 0/1 0/1 ./. ./. 0/0 1/1 1/1 0/1 0/0 0/1 0/0 1/1 ./. ./. 0/1 0/0 0/0 1/1 1/1 0/0 0/1 0/1 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 0/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 ./. ./. 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3076 3 19941914 SNP-3.19940424. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35940-LOC_Os03g35950|LOC_Os03g35940-LOC_Os03g35950|intergenic_region|LOC_Os03g35940-LOC_Os03g35950|||n.19941914C>A|||||| GT 0/1 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 ./. 0/0 1/1 ./. ./. 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3077 3 19942216 SNP-3.19940726. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35940-LOC_Os03g35950|LOC_Os03g35940-LOC_Os03g35950|intergenic_region|LOC_Os03g35940-LOC_Os03g35950|||n.19942216A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3078 3 19944547 SNP-3.19943057. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35940-LOC_Os03g35950|LOC_Os03g35940-LOC_Os03g35950|intergenic_region|LOC_Os03g35940-LOC_Os03g35950|||n.19944547C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3079 3 19944661 SNP-3.19943171. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35940-LOC_Os03g35950|LOC_Os03g35940-LOC_Os03g35950|intergenic_region|LOC_Os03g35940-LOC_Os03g35950|||n.19944661A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 ./. 0/0 0/0 1/1 ./. 0/0 0/1 0/0 0/0 1/1 0/0 0/0 1/1 0/1 1/1 0/0 0/0 1/1 0/1 1/1 1/1 ./. 1/1 0/1 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/1 1/1 1/1 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3080 3 19948191 SNP-3.19946701. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35950|LOC_Os03g35950|transcript|LOC_Os03g35950.1|protein_coding|2/2|c.361C>A|p.Ser121Thr|485/505|361/381|121/126||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 0/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 ./. 1/1 1/1 1/1 0/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/1 1/1 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 ./. 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3081 3 19948632 SNP-3.19947142. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35950-LOC_Os03g35960|LOC_Os03g35950-LOC_Os03g35960|intergenic_region|LOC_Os03g35950-LOC_Os03g35960|||n.19948632A>G|||||| GT 0/0 0/0 1/1 1/1 0/1 0/0 1/1 0/0 ./. 0/0 ./. ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 ./. 0/1 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3082 3 19948939 SNP-3.19947449. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35950-LOC_Os03g35960|LOC_Os03g35950-LOC_Os03g35960|intergenic_region|LOC_Os03g35950-LOC_Os03g35960|||n.19948939C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 0/1 ./. 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 1/1 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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changeset
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3083 3 19949392 SNP-3.19947902. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35950-LOC_Os03g35960|LOC_Os03g35950-LOC_Os03g35960|intergenic_region|LOC_Os03g35950-LOC_Os03g35960|||n.19949392A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 0/0 1/1 0/1 0/1 ./. 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/1 0/0 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/1 0/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 ./. 0/0 ./. 0/1 0/0 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3084 3 19952853 SNP-3.19951363. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35970|LOC_Os03g35970|transcript|LOC_Os03g35970.1|protein_coding|4/7|c.376G>T|p.Asn126Tyr|376/1278|376/1278|126/425||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. ./. 1/1 ./. 0/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 0/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3085 3 19953252 SNP-3.19951762. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35970|LOC_Os03g35970|transcript|LOC_Os03g35970.1|protein_coding|2/7|c.115G>T|p.Thr39Ser|115/1278|115/1278|39/425||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3086 3 19956745 SNP-3.19955255. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35970-LOC_Os03g35980|LOC_Os03g35970-LOC_Os03g35980|intergenic_region|LOC_Os03g35970-LOC_Os03g35980|||n.19956745C>A|||||| GT 0/0 ./. ./. ./. 0/0 0/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/1 ./. ./. 0/0 0/0 1/1 0/0 0/1 ./. 0/0 0/0 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 ./. 0/0 0/0 1/1 ./. 0/0 ./. 1/1 0/0 1/1 0/0 0/0 ./. ./. 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 ./. ./. 1/1 0/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 0/0 ./. 1/1 1/1 0/0 0/0 0/1 0/1 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/1 ./. 0/0 ./. 0/0 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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3087 3 19957190 SNP-3.19955700. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35970-LOC_Os03g35980|LOC_Os03g35970-LOC_Os03g35980|intergenic_region|LOC_Os03g35970-LOC_Os03g35980|||n.19957190A>G|||||| GT ./. 0/0 ./. 0/0 1/1 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 ./. 0/0 1/1 ./. 0/0 ./. 0/1 1/1 1/1 ./. 0/1 1/1 ./. 1/1 ./. 1/1 ./. ./. 1/1 ./. 1/1 1/1 ./. 0/1 1/1 0/0 1/1 ./. ./. ./. 1/1 ./. 1/1 ./. 1/1 0/0 ./. ./. 1/1 0/0 ./. 0/0 1/1 1/1 1/1 ./. 0/0 0/0 ./. 1/1 0/0 ./. 0/1 0/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 ./. 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 ./. ./. 0/0 1/1 1/1 0/0 1/1 ./. 0/0 1/1 0/0 1/1 1/1 0/0 ./. 1/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 0/1 0/0 1/1 0/1 ./. ./. 1/1 1/1 ./. 0/0 0/0 0/0 1/1 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 ./. 0/0 ./. ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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parents:
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3088 3 19957532 SNP-3.19956042. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g35970-LOC_Os03g35980|LOC_Os03g35970-LOC_Os03g35980|intergenic_region|LOC_Os03g35970-LOC_Os03g35980|||n.19957532A>G|||||| GT ./. 0/0 1/1 0/0 ./. 0/1 1/1 0/0 0/0 0/0 ./. ./. 0/1 0/1 0/1 0/0 0/0 1/1 0/0 ./. ./. 1/1 0/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 ./. ./. 1/1 ./. 0/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 ./. 1/1 0/1 ./. 0/1 ./. 1/1 0/0 ./. ./. ./. 0/0 1/1 0/0 1/1 1/1 0/1 ./. ./. 0/0 0/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 1/1 0/1 0/1 0/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 ./. 1/1 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/0 1/1 1/1 ./. 0/0 1/1 0/0 1/1 0/1 1/1 0/1 1/1 1/1 ./. 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. ./. ./. ./. ./. ./. 1/1 ./. ./. 1/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 1/1 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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3089 3 19961777 SNP-3.19960287. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g35980-LOC_Os03g35990|LOC_Os03g35980-LOC_Os03g35990|intergenic_region|LOC_Os03g35980-LOC_Os03g35990|||n.19961777C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 ./. 1/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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3090 3 19962829 SNP-3.19961339. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g35990|LOC_Os03g35990|transcript|LOC_Os03g35990.1|protein_coding|8/8|c.1280G>T|p.Ser427Ile|1280/1455|1280/1455|427/484|| GT 0/0 1/1 0/0 1/1 0/0 0/0 ./. 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/1 0/1 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 ./. 0/1 ./. ./. 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/1 0/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 ./. 1/1 1/1 0/0 1/1 0/0 ./. 1/1 0/0 0/1 0/0 0/1 0/0 ./. 1/1 0/0 1/1 ./. 0/0 0/0 1/1 0/1 0/0 0/0 0/1 ./. 0/0 0/0 0/1 0/0 1/1 1/1 1/1 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 ./. 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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3091 3 19969198 SNP-3.19967708. A G . . PR;ANN=G|intron_variant|MODIFIER|LOC_Os03g36000|LOC_Os03g36000|transcript|LOC_Os03g36000.1|protein_coding|4/4|c.3369-55T>C|||||| GT 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/1 ./. 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 ./. 0/1 ./. 0/0 0/1 ./. 1/1 0/0 ./. 0/0 ./. 1/1 ./. 0/1 0/0 0/0 0/0 0/1 0/0 1/1 ./. 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. ./. 0/0 ./. 0/0 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/1 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/1 ./. ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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3092 3 19969228 SNP-3.19967738. C A . . PR;ANN=A|intron_variant|MODIFIER|LOC_Os03g36000|LOC_Os03g36000|transcript|LOC_Os03g36000.1|protein_coding|4/4|c.3369-85G>T|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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3093 3 19969947 SNP-3.19968457. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g36000|LOC_Os03g36000|transcript|LOC_Os03g36000.1|protein_coding|3/5|c.3140G>T|p.Ile1047Ile|3140/3555|3140/3555|1047/1184||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 ./. 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 ./. 0/1 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/1 1/1 1/1 1/1 0/0 ./. 0/0 1/1 1/1 1/1 0/1 0/1 0/0 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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changeset
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3094 3 19970174 SNP-3.19968684. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g36000|LOC_Os03g36000|transcript|LOC_Os03g36000.1|protein_coding|3/5|c.2913G>T|p.Leu971Phe|2913/3555|2913/3555|971/1184||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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3095 3 19970612 SNP-3.19969122. A G . . PR;ANN=G|synonymous_variant|LOW|LOC_Os03g36000|LOC_Os03g36000|transcript|LOC_Os03g36000.1|protein_coding|3/5|c.2475T>C|p.Ser825Ser|2475/3555|2475/3555|825/1184||WARNING_REF_DOES_NOT_MATCH_GENOME GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
parents:
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3096 3 19971695 SNP-3.19970205. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g36000|LOC_Os03g36000|transcript|LOC_Os03g36000.1|protein_coding|3/5|c.1392G>T|p.Leu464Leu|1392/3555|1392/3555|464/1184||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 0/1 1/1 0/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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3097 3 19973386 SNP-3.19971896. C A . . PR;ANN=A|missense_variant|MODERATE|LOC_Os03g36000|LOC_Os03g36000|transcript|LOC_Os03g36000.1|protein_coding|1/5|c.20G>T|p.Ser7Phe|20/3555|20/3555|7/1184||WARNING_REF_DOES_NOT_MATCH_GENOME GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/1 1/1 0/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 1/1 0/0 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 0/0 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/1 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 ./. 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 |
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3098 3 19974011 SNP-3.19972521. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g36000-LOC_Os03g36020|LOC_Os03g36000-LOC_Os03g36020|intergenic_region|LOC_Os03g36000-LOC_Os03g36020|||n.19974011A>G|||||| GT 0/0 0/0 0/1 0/0 ./. 1/1 1/1 0/0 0/0 0/0 1/1 ./. 0/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 0/1 1/1 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 1/1 1/1 0/0 0/1 1/1 1/1 1/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3099 3 19975116 SNP-3.19973626. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g36000-LOC_Os03g36020|LOC_Os03g36000-LOC_Os03g36020|intergenic_region|LOC_Os03g36000-LOC_Os03g36020|||n.19975116A>G|||||| GT 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 ./. 1/1 1/1 ./. 1/1 0/0 ./. 1/1 0/0 1/1 ./. ./. 0/0 0/0 0/0 ./. 1/1 ./. 1/1 ./. 1/1 ./. 0/0 ./. 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. ./. ./. ./. 0/0 ./. ./. ./. 0/0 ./. 0/0 0/0 ./. 1/1 ./. 0/0 0/0 1/1 ./. 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 ./. 1/1 1/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 1/1 0/0 1/1 ./. ./. ./. 0/0 1/1 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. ./. 0/0 0/0 0/0 1/1 0/0 ./. ./. 1/1 ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 1/1 ./. ./. ./. 0/0 1/1 ./. 0/0 0/0 1/1 1/1 ./. ./. ./. 1/1 1/1 ./. ./. 1/1 1/1 ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 0/0 0/0 ./. 0/0 1/1 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3100 3 19976521 SNP-3.19975031. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g36000-LOC_Os03g36020|LOC_Os03g36000-LOC_Os03g36020|intergenic_region|LOC_Os03g36000-LOC_Os03g36020|||n.19976521C>A|||||| GT 0/0 1/1 ./. 1/1 0/0 0/0 0/0 ./. 1/1 1/1 0/1 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 ./. 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 0/1 1/1 0/1 0/1 0/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/1 1/1 0/0 1/1 0/0 0/0 0/1 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3101 3 19983247 SNP-3.19981757. C A . . PR;ANN=A|synonymous_variant|LOW|LOC_Os03g36030|LOC_Os03g36030|transcript|LOC_Os03g36030.1|protein_coding|1/3|c.1929C>A|p.Leu643Leu|1929/4386|1929/4386|643/1461|| GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. ./. ./. 1/1 0/0 1/1 1/1 0/0 ./. ./. 1/1 ./. 1/1 0/0 1/1 ./. ./. 1/1 1/1 1/1 ./. ./. ./. ./. ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/0 0/0 0/0 ./. ./. ./. 0/0 ./. 0/0 1/1 1/1 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 1/1 1/1 0/0 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/0 0/0 0/0 ./. 0/0 1/1 0/0 |
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3102 3 19989349 SNP-3.19987859. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g36030-LOC_Os03g36050|LOC_Os03g36030-LOC_Os03g36050|intergenic_region|LOC_Os03g36030-LOC_Os03g36050|||n.19989349C>A|||||| GT 0/0 1/1 ./. 1/1 ./. 0/0 ./. 1/1 1/1 0/1 0/1 ./. 0/0 0/1 ./. 1/1 ./. 0/0 1/1 0/0 0/0 0/1 0/0 1/1 ./. ./. ./. ./. ./. ./. 0/0 0/0 ./. ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 1/1 1/1 1/1 ./. 1/1 0/0 1/1 0/1 1/1 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 0/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 1/1 1/1 1/1 1/1 ./. 0/0 0/1 0/0 0/1 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 ./. 1/1 1/1 0/0 0/1 ./. 0/1 0/0 0/0 ./. 0/1 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/1 0/0 0/0 0/0 0/0 0/1 0/0 |
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3103 3 19989539 SNP-3.19988049. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g36030-LOC_Os03g36050|LOC_Os03g36030-LOC_Os03g36050|intergenic_region|LOC_Os03g36030-LOC_Os03g36050|||n.19989539C>A|||||| GT 1/1 1/1 ./. 1/1 0/0 ./. ./. 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 0/0 1/1 1/1 1/1 1/1 ./. 1/1 ./. 1/1 1/1 ./. 1/1 1/1 0/0 ./. ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. ./. 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 1/1 ./. ./. 0/0 1/1 1/1 ./. 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 ./. 1/1 0/0 ./. ./. 0/0 0/0 ./. 0/0 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 1/1 0/0 ./. 0/0 0/0 1/1 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 0/0 0/0 ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 ./. 1/1 ./. 0/0 0/0 ./. 1/1 1/1 1/1 1/1 1/1 ./. 1/1 0/0 ./. 0/0 ./. 0/0 ./. ./. 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 ./. 0/0 ./. 0/0 ./. ./. 0/0 0/0 1/1 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3104 3 19991345 SNP-3.19989855. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g36030-LOC_Os03g36050|LOC_Os03g36030-LOC_Os03g36050|intergenic_region|LOC_Os03g36030-LOC_Os03g36050|||n.19991345A>G|||||| GT 0/0 0/0 1/1 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 1/1 1/1 0/0 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/1 ./. 0/0 0/0 ./. 0/0 ./. ./. 0/0 0/0 0/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/1 1/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/0 0/0 0/0 0/0 ./. ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 1/1 1/1 1/1 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 ./. 1/1 1/1 1/1 0/1 1/1 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 1/1 ./. 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 0/0 0/0 |
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planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
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3105 3 19991997 SNP-3.19990507. A G . . PR;ANN=G|intergenic_region|MODIFIER|LOC_Os03g36030-LOC_Os03g36050|LOC_Os03g36030-LOC_Os03g36050|intergenic_region|LOC_Os03g36030-LOC_Os03g36050|||n.19991997A>G|||||| GT 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 ./. ./. 1/1 1/1 1/1 0/1 ./. 1/1 0/0 1/1 1/1 1/1 0/0 1/1 0/0 1/1 1/1 0/0 1/1 0/0 0/0 1/1 0/0 0/0 1/1 1/1 1/1 1/1 1/1 ./. 0/0 0/1 1/1 1/1 ./. 0/0 0/0 0/0 0/0 ./. 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 1/1 0/0 ./. 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/0 0/0 1/1 1/1 ./. 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 1/1 1/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 1/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 |
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633d264f8888
planemo upload commit 475f4d7d8442a0d75e103af326ae5881c4d2a4ac
dereeper
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3106 3 19992016 SNP-3.19990526. C A . . PR;ANN=A|intergenic_region|MODIFIER|LOC_Os03g36030-LOC_Os03g36050|LOC_Os03g36030-LOC_Os03g36050|intergenic_region|LOC_Os03g36030-LOC_Os03g36050|||n.19992016C>A|||||| GT 0/0 1/1 0/0 1/1 0/0 0/0 0/0 1/1 1/1 0/1 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/1 1/1 0/0 1/1 1/1 0/1 0/1 0/1 0/1 0/1 0/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 1/1 ./. 1/1 1/1 1/1 0/0 1/1 0/0 1/1 0/1 1/1 0/1 0/0 0/0 0/0 0/1 1/1 0/0 1/1 1/1 0/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 1/1 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 1/1 1/1 1/1 0/1 1/1 0/0 1/1 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0/0 0/0 1/1 1/1 0/0 0/0 0/0 0/0 1/1 0/0 |