# HG changeset patch
# User dereeper
# Date 1705324453 0
# Node ID a29a0f2c089744a712f57995e544f3d45adf08a7
# Parent  4ca9252178df277d205c96259b7c7610693dcc4a
Uploaded

diff -r 4ca9252178df -r a29a0f2c0897 tassel.xml
--- a/tassel.xml	Wed Jan 03 13:41:53 2024 +0000
+++ b/tassel.xml	Mon Jan 15 13:14:13 2024 +0000
@@ -2,14 +2,11 @@
 	<description>Software to evaluate traits associations, evolutionary patterns, and linkage disequilibrium</description>
 	<requirements>
 				<requirement type="package" version="5.2.89">tassel</requirement>
-				<requirement type="package" version="8.0.302">openjdk</requirement>
         </requirements>
-​
     <stdio>
         <!-- [HELP] If no exit code rule is defined, the tool will stop if anything is written to STDERR -->
         <exit_code range="1:" level="fatal" />
     </stdio>
-​
 	<command>tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/
 #if $analysis_opts.fonction_selector == "mlm":
  -fork1 -h $hapmap -filterAlign -filterAlignMinFreq $filterAlignMinFreq
@@ -136,47 +133,46 @@
             <output name="output2" value="Allele_effects.txt"/>
         </test>
     </tests>
-​
     <help><![CDATA[
-​
-​
-.. class:: infomark
-​
-**Tassel5** version 5.2.40
-​
-.. class:: infomark
-​
-**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)
-​
-.. class:: infomark
-​
-**Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
-​
----------------------------------------------------
-​
-=======
-Tassel5
-=======
-​
------------
-Description
------------
-​
-  | Software to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.
-  | For further informations on tassel, please visit the website_.
-​
-.. _website: http://www.maizegenetics.net/tassel/
-​
-------------
-Dependencies
-------------
-Tassel5
-        tassel_ 5.2.40, Conda version
-​
-.. _tassel: https://anaconda.org/bioconda/tassel
-​
+	    .. class:: infomark
+
+	    **Tassel5** version 5.2.40
+
+	    .. class:: infomark
+
+	    **Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA)
+
+	    .. class:: infomark
+
+	    **Support** For any questions about Galaxy integration, please send an e-mail to alexis.dereeper@ird.fr
+
+	    ---------------------------------------------------
+
+	    =======
+	    Tassel5
+	    =======
+
+	    -----------
+	    Description
+	    -----------
+
+	    | Software to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.
+	    | For further informations on tassel, please visit the website_.
+
+	    .. _website: http://www.maizegenetics.net/tassel/
+
+	    ------------
+	    Dependencies
+	    ------------
+
+	    Tassel5
+
+	    tassel_ 5.2.40, Conda version
+
+	    .. _tassel: https://anaconda.org/bioconda/tassel
+
     ]]></help>
     <citations>
        <citation type="doi">10.1093/bioinformatics/btm308</citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>