# HG changeset patch
# User dereeper
# Date 1705930262 0
# Node ID d9c73778f0e2ea7c028827eaac6fe1d671621a01
# Parent  88ea6f8f664ed110a00e5c489317c857a7da2a64
Deleted selected files

diff -r 88ea6f8f664e -r d9c73778f0e2 tassel.sh
--- a/tassel.sh	Tue Jan 16 10:59:25 2024 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,46 +0,0 @@
-#!/bin/bash
-
-analyseType=$1;
-out1=$2;
-out2=$3;
-out3=$4;
-log1=$5;
-galaxyOutDir=$6;
-
-version=$(java -version 2>&1 | grep version)
-
-mkdir $galaxyOutDir
-
-# Suppression des 6 premiers arguments de la liste des arguments $@
-shift; shift; shift; shift; shift; shift;
-
-
-if [[ $analyseType == glm ]] 
-then
- run_pipeline.pl $* >> $log1 2>&1
- mv "$galaxyOutDir/TASSELGLM1.txt" $out1
- if [ $? -gt 0 ] ; then exit 1 ; fi ##check the run of commands
- mv "$galaxyOutDir/TASSELGLM2.txt" $out2
-fi
-
-if [[ $analyseType == mlm ]] 
-then
- run_pipeline.pl $* >> $log1 2>&1
- mv "$galaxyOutDir/TASSELMLM1.txt" $out1
- if [ $? -gt 0 ] ; then exit 1 ; fi ##check the run of commands
- mv "$galaxyOutDir/TASSELMLM2.txt" $out2
- mv "$galaxyOutDir/TASSELMLM3.txt" $out3
-fi
-
-if [[ $analyseType == ld ]] 
-then
- run_pipeline.pl $* >> $log1 2>&1
-fi
-
-
-if [[ $analyseType == ck ]]
-then
- run_pipeline.pl $* >> $log1 2>&1
- mv "$galaxyOutDir/kinship.txt" $out1
- if [ $? -gt 0 ] ; then exit 1 ; fi ##check the run of commands
-fi