Mercurial > repos > dereeper > uniqprimer
view uniqprimer-0.5.0/logfile.txt @ 6:8218425fda1d draft default tip
Uploaded
| author | dereeper |
|---|---|
| date | Tue, 04 Jan 2022 16:05:55 +0000 |
| parents | 3249d78ecfc2 |
| children |
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utils::Initialize( ) - Initialization complete. Temporary directory: tmpz0OJOq uniqprimer::Main( ) - Logging include files: uniqprimer::Main( ) - data/PX099A.fa data/Xoc_BLS256.fasta uniqprimer::Main( ) - Logging exclude files: uniqprimer::Main( ) - data/Xoo_KACC_10331.fasta data/Xoc_BLS256.fasta UniqPrimerFinder::__init__() - Initializing UniqPrimerFinder utils::search_file - Path: /usr/local/bioinfo/primer3/1.1.1:/usr/local/bioinfo/EMBOSS/6.6.0/bin:/usr/local/bioinfo/primer3/2.2.3:/usr/local/bioinfo/MUMmer/3.23/aux_bin:/usr/local/bioinfo/MUMmer/3.23:/usr/local/bioinfo/python/2.7.9_build2/bin:/homedir/galaxy/galaxy_env/bin:/usr/local/bioinfo/R/3.1.3/bin:/usr/local/bioinfo/geos/3.4.2/bin:/usr/local/bioinfo/gdal/1.9.2/bin:/usr/local/java/jre8/bin:/usr/local/bioinfo/samtools/1.2/bin:/opt/cluster/compilers/gcc/gcc-4.9.2/bin:/SGE/8.1.8/bin:/SGE/8.1.8/bin/lx-amd64:/usr/lib64/qt-3.3/bin:/usr/lpp/mmfs/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/galaxy/bin utils::search_file - Path: /usr/local/bioinfo/primer3/1.1.1:/usr/local/bioinfo/EMBOSS/6.6.0/bin:/usr/local/bioinfo/primer3/2.2.3:/usr/local/bioinfo/MUMmer/3.23/aux_bin:/usr/local/bioinfo/MUMmer/3.23:/usr/local/bioinfo/python/2.7.9_build2/bin:/homedir/galaxy/galaxy_env/bin:/usr/local/bioinfo/R/3.1.3/bin:/usr/local/bioinfo/geos/3.4.2/bin:/usr/local/bioinfo/gdal/1.9.2/bin:/usr/local/java/jre8/bin:/usr/local/bioinfo/samtools/1.2/bin:/opt/cluster/compilers/gcc/gcc-4.9.2/bin:/SGE/8.1.8/bin:/SGE/8.1.8/bin/lx-amd64:/usr/lib64/qt-3.3/bin:/usr/lpp/mmfs/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/galaxy/bin utils::search_file - Path: /usr/local/bioinfo/primer3/1.1.1:/usr/local/bioinfo/EMBOSS/6.6.0/bin:/usr/local/bioinfo/primer3/2.2.3:/usr/local/bioinfo/MUMmer/3.23/aux_bin:/usr/local/bioinfo/MUMmer/3.23:/usr/local/bioinfo/python/2.7.9_build2/bin:/homedir/galaxy/galaxy_env/bin:/usr/local/bioinfo/R/3.1.3/bin:/usr/local/bioinfo/geos/3.4.2/bin:/usr/local/bioinfo/gdal/1.9.2/bin:/usr/local/java/jre8/bin:/usr/local/bioinfo/samtools/1.2/bin:/opt/cluster/compilers/gcc/gcc-4.9.2/bin:/SGE/8.1.8/bin:/SGE/8.1.8/bin/lx-amd64:/usr/lib64/qt-3.3/bin:/usr/lpp/mmfs/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/galaxy/bin utils::search_file - Path: /usr/local/bioinfo/primer3/1.1.1:/usr/local/bioinfo/EMBOSS/6.6.0/bin:/usr/local/bioinfo/primer3/2.2.3:/usr/local/bioinfo/MUMmer/3.23/aux_bin:/usr/local/bioinfo/MUMmer/3.23:/usr/local/bioinfo/python/2.7.9_build2/bin:/homedir/galaxy/galaxy_env/bin:/usr/local/bioinfo/R/3.1.3/bin:/usr/local/bioinfo/geos/3.4.2/bin:/usr/local/bioinfo/gdal/1.9.2/bin:/usr/local/java/jre8/bin:/usr/local/bioinfo/samtools/1.2/bin:/opt/cluster/compilers/gcc/gcc-4.9.2/bin:/SGE/8.1.8/bin:/SGE/8.1.8/bin/lx-amd64:/usr/lib64/qt-3.3/bin:/usr/lpp/mmfs/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/galaxy/bin UniqPrimerFinder::__init__() - Initializing UniqPrimerFinder - complete UniqPrimerFinder::findPrimers() - Finding primers for include files ExcludeFileManager::addExcludeFile( ) - adding exclude file data/Xoo_KACC_10331.fasta ExcludeFileManager::addExcludeFile( ) - adding exclude file data/Xoc_BLS256.fasta ExcludeFileManager::exportSequences( ) - parsing exclude sequences fastaparser::parseFastaFile( ) - parsing fasta file data/Xoo_KACC_10331.fasta fastaparser::parseFastaFile( ) - parsing fasta file data/Xoc_BLS256.fasta ExcludeFileManager::exportSequences( ) - finished parsing, writing to a common file ExcludeFileManager::buildOutputFileName( ) - exclude file: tmpz0OJOq/combined_exlude.ffn ExcludeFileManager::exportSequences( ) - All sequences exported IncludeFileManager::setExcludeFile( ) - fileName tmpz0OJOq/combined_exlude.ffn IncludeFileManager::processIncludeFile( ) - processing data/PX099A.fa IncludeFileManager::processIncludeFile( ) - running nucmer for reference file: data/PX099A.fa IncludeFileManager::findUniqueSequence( ) - running nucmer for reference file: data/PX099A.fa ProgramBase::Execute( ) - Running the nucmer program. ProgramBase::Execute( ) - /usr/local/bioinfo/MUMmer/3.23/nucmer -p nucmer_alignments -o --minmatch 300 --maxgap 1 data/PX099A.fa tmpz0OJOq/combined_exlude.ffn NucmerParser::parseCoordMatchFile( ) - Parse nucmer_alignments.coords, finding 1900 matches fastaparser::parseFastaFileAsPrimerSequence( ) - parsing fasta file data/PX099A.fa fastaparser::parseFastaFileAsPrimerSequence( ) - read 1 sequences PrimerSequence::getNonMatchedSubSequences( ) - finding valid sub sequences for CP000967 PrimerSequence::findValidIndices( ) - getting unmatched sequence indices PrimerSequence::findValidIndices( ) - there are 1900 excluded sequences for CP000967 PrimerSequence::findValidIndices( ) - removing exclude sequence 1 - 31166 PrimerSequence::findValidIndices( ) - removing exclude sequence 3 - 3228 PrimerSequence::findValidIndices( ) - removing exclude sequence 3405 - 16758 PrimerSequence::findValidIndices( ) - removing exclude sequence 17115 - 26223 PrimerSequence::findValidIndices( ) - removing exclude sequence 23051 - 24146 PrimerSequence::findValidIndices( ) - removing exclude sequence 27504 - 30719 PrimerSequence::findValidIndices( ) - removing exclude sequence 31163 - 32271 PrimerSequence::findValidIndices( ) - removing exclude sequence 32267 - 33121 PrimerSequence::findValidIndices( ) - removing exclude sequence 32268 - 33123 PrimerSequence::findValidIndices( ) - removing exclude sequence 32268 - 33123 PrimerSequence::findValidIndices( ) - removing exclude sequence 32268 - 33123 PrimerSequence::findValidIndices( ) - removing exclude sequence 32268 - 33123 PrimerSequence::findValidIndices( ) - removing exclude sequence 32268 - 33123 PrimerSequence::findValidIndices( ) - removing exclude sequence 32271 - 33121 PrimerSequence::findValidIndices( ) - removing exclude sequence 32271 - 33121 PrimerSequence::findValidIndices( ) - removing exclude sequence 32271 - 33121 PrimerSequence::findValidIndices( ) - removing exclude sequence 32271 - 33121 PrimerSequence::findValidIndices( ) - removing exclude sequence 32271 - 33121 PrimerSequence::findValidIndices( ) - removing exclude sequence 33120 - 34032 PrimerSequence::findValidIndices( ) - removing exclude sequence 34025 - 39096 PrimerSequence::findValidIndices( ) - removing exclude sequence 34546 - 39416 PrimerSequence::findValidIndices( ) - removing exclude sequence 39092 - 39416 PrimerSequence::findValidIndices( ) - removing exclude sequence 40489 - 55699 PrimerSequence::findValidIndices( ) - removing exclude sequence 42121 - 44732 PrimerSequence::findValidIndices( ) - removing exclude sequence 45823 - 46900 PrimerSequence::findValidIndices( ) - removing exclude sequence 47853 - 49011 PrimerSequence::findValidIndices( ) - removing exclude sequence 47853 - 49011 PrimerSequence::findValidIndices( ) - removing exclude sequence 49011 - 56022 PrimerSequence::findValidIndices( ) - removing exclude sequence 55691 - 61486 PrimerSequence::findValidIndices( ) - removing exclude sequence 56024 - 61483 PrimerSequence::findValidIndices( ) - removing exclude sequence 61482 - 62961 PrimerSequence::findValidIndices( ) - removing exclude sequence 61483 - 62615 PrimerSequence::findValidIndices( ) - removing exclude sequence 61483 - 62957 PrimerSequence::findValidIndices( ) - removing exclude sequence 61576 - 62720 PrimerSequence::findValidIndices( ) - removing exclude sequence 62938 - 114392 PrimerSequence::findValidIndices( ) - removing exclude sequence 65874 - 83097 PrimerSequence::findValidIndices( ) - removing exclude sequence 87291 - 88381 PrimerSequence::findValidIndices( ) - removing exclude sequence 87291 - 88381 PrimerSequence::findValidIndices( ) - removing exclude sequence 88387 - 91877 PrimerSequence::findValidIndices( ) - removing exclude sequence 91865 - 92692 PrimerSequence::findValidIndices( ) - removing exclude sequence 91872 - 92691 PrimerSequence::findValidIndices( ) - removing exclude sequence 92689 - 112653 PrimerSequence::findValidIndices( ) - removing exclude sequence 114531 - 117837 PrimerSequence::findValidIndices( ) - removing exclude sequence 114531 - 115637 PrimerSequence::findValidIndices( ) - removing exclude sequence 115975 - 117045 PrimerSequence::findValidIndices( ) - removing exclude sequence 115976 - 117034 PrimerSequence::findValidIndices( ) - removing exclude sequence 115977 - 117035 PrimerSequence::findValidIndices( ) - removing exclude sequence 119042 - 120526 PrimerSequence::findValidIndices( ) - removing exclude sequence 119049 - 120521 PrimerSequence::findValidIndices( ) - removing exclude sequence 119049 - 120521 PrimerSequence::findValidIndices( ) - removing exclude sequence 120213 - 136890 PrimerSequence::findValidIndices( ) - removing exclude sequence 122606 - 127952 PrimerSequence::findValidIndices( ) - removing exclude sequence 128089 - 129184 PrimerSequence::findValidIndices( ) - removing exclude sequence 130414 - 131474 PrimerSequence::findValidIndices( ) - removing exclude sequence 132288 - 132942 PrimerSequence::findValidIndices( ) - removing exclude sequence 132934 - 134457 PrimerSequence::findValidIndices( ) - removing exclude sequence 132935 - 134457 PrimerSequence::findValidIndices( ) - removing exclude sequence 132935 - 134454 PrimerSequence::findValidIndices( ) - removing exclude sequence 139338 - 139704 PrimerSequence::findValidIndices( ) - removing exclude sequence 139702 - 176829 PrimerSequence::findValidIndices( ) - removing exclude sequence 141742 - 142562 PrimerSequence::findValidIndices( ) - removing exclude sequence 141743 - 142563 PrimerSequence::findValidIndices( ) - removing exclude sequence 141743 - 142561 PrimerSequence::findValidIndices( ) - removing exclude sequence 146663 - 147724 PrimerSequence::findValidIndices( ) - removing exclude sequence 146664 - 147723 PrimerSequence::findValidIndices( ) - removing exclude sequence 146665 - 147723 PrimerSequence::findValidIndices( ) - removing exclude sequence 146665 - 147713 PrimerSequence::findValidIndices( ) - removing exclude sequence 148559 - 173216 PrimerSequence::findValidIndices( ) - removing exclude sequence 173799 - 174429 PrimerSequence::findValidIndices( ) - removing exclude sequence 174429 - 175487 PrimerSequence::findValidIndices( ) - removing exclude sequence 178476 - 197052 PrimerSequence::findValidIndices( ) - removing exclude sequence 178478 - 179905 PrimerSequence::findValidIndices( ) - removing exclude sequence 178478 - 179992 PrimerSequence::findValidIndices( ) - removing exclude sequence 178479 - 179993 PrimerSequence::findValidIndices( ) - removing exclude sequence 178630 - 179993 PrimerSequence::findValidIndices( ) - removing exclude sequence 178696 - 179997 PrimerSequence::findValidIndices( ) - removing exclude sequence 181229 - 193276 PrimerSequence::findValidIndices( ) - removing exclude sequence 194424 - 195483 PrimerSequence::findValidIndices( ) - removing exclude sequence 194424 - 195483 PrimerSequence::findValidIndices( ) - removing exclude sequence 194425 - 195484 PrimerSequence::findValidIndices( ) - removing exclude sequence 194425 - 195483 PrimerSequence::findValidIndices( ) - removing exclude sequence 194425 - 195485 PrimerSequence::findValidIndices( ) - removing exclude sequence 194425 - 195477 PrimerSequence::findValidIndices( ) - removing exclude sequence 195484 - 196519 PrimerSequence::findValidIndices( ) - removing exclude sequence 195484 - 196521 PrimerSequence::findValidIndices( ) - removing exclude sequence 196517 - 197054 PrimerSequence::findValidIndices( ) - removing exclude sequence 196517 - 197054 PrimerSequence::findValidIndices( ) - removing exclude sequence 196517 - 197055 PrimerSequence::findValidIndices( ) - removing exclude sequence 196689 - 197054 PrimerSequence::findValidIndices( ) - removing exclude sequence 199375 - 200894 PrimerSequence::findValidIndices( ) - removing exclude sequence 200888 - 202369 PrimerSequence::findValidIndices( ) - removing exclude sequence 200890 - 202370 PrimerSequence::findValidIndices( ) - removing exclude sequence 200893 - 202365 PrimerSequence::findValidIndices( ) - removing exclude sequence 200893 - 202365 PrimerSequence::findValidIndices( ) - removing exclude sequence 202348 - 207920 PrimerSequence::findValidIndices( ) - removing exclude sequence 202369 - 207428 PrimerSequence::findValidIndices( ) - removing exclude sequence 207923 - 209000 PrimerSequence::findValidIndices( ) - removing exclude sequence 208993 - 214743 PrimerSequence::findValidIndices( ) - removing exclude sequence 208993 - 214570 PrimerSequence::findValidIndices( ) - removing exclude sequence 214736 - 215855 PrimerSequence::findValidIndices( ) - removing exclude sequence 214736 - 215862 PrimerSequence::findValidIndices( ) - removing exclude sequence 214736 - 215856 PrimerSequence::findValidIndices( ) - removing exclude sequence 214737 - 215855 PrimerSequence::findValidIndices( ) - removing exclude sequence 214737 - 215848 PrimerSequence::findValidIndices( ) - removing exclude sequence 215854 - 222204 PrimerSequence::findValidIndices( ) - removing exclude sequence 217455 - 222636 PrimerSequence::findValidIndices( ) - removing exclude sequence 220799 - 223119 PrimerSequence::findValidIndices( ) - removing exclude sequence 224441 - 227316 PrimerSequence::findValidIndices( ) - removing exclude sequence 224994 - 226836 PrimerSequence::findValidIndices( ) - removing exclude sequence 226468 - 228869 PrimerSequence::findValidIndices( ) - removing exclude sequence 228635 - 267869 PrimerSequence::findValidIndices( ) - removing exclude sequence 229047 - 238773 PrimerSequence::findValidIndices( ) - removing exclude sequence 239009 - 266667 PrimerSequence::findValidIndices( ) - removing exclude sequence 266666 - 267871 PrimerSequence::findValidIndices( ) - removing exclude sequence 266666 - 268519 PrimerSequence::findValidIndices( ) - removing exclude sequence 268516 - 269591 PrimerSequence::findValidIndices( ) - removing exclude sequence 268519 - 269591 PrimerSequence::findValidIndices( ) - removing exclude sequence 268545 - 269591 PrimerSequence::findValidIndices( ) - removing exclude sequence 268545 - 269591 PrimerSequence::findValidIndices( ) - removing exclude sequence 270117 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270121 - 271642 PrimerSequence::findValidIndices( ) - removing exclude sequence 270121 - 271637 PrimerSequence::findValidIndices( ) - removing exclude sequence 270122 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270122 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270123 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270123 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270123 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270123 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270123 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270124 - 272693 PrimerSequence::findValidIndices( ) - removing exclude sequence 270124 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270125 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270125 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270140 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270211 - 271638 PrimerSequence::findValidIndices( ) - removing exclude sequence 270211 - 271649 PrimerSequence::findValidIndices( ) - removing exclude sequence 270211 - 271644 PrimerSequence::findValidIndices( ) - removing exclude sequence 271637 - 341522 PrimerSequence::findValidIndices( ) - removing exclude sequence 274839 - 302978 PrimerSequence::findValidIndices( ) - removing exclude sequence 303209 - 313653 PrimerSequence::findValidIndices( ) - removing exclude sequence 313938 - 314996 PrimerSequence::findValidIndices( ) - removing exclude sequence 324512 - 341522 PrimerSequence::findValidIndices( ) - removing exclude sequence 342595 - 344121 PrimerSequence::findValidIndices( ) - removing exclude sequence 343937 - 358101 PrimerSequence::findValidIndices( ) - removing exclude sequence 344132 - 344943 PrimerSequence::findValidIndices( ) - removing exclude sequence 344135 - 345459 PrimerSequence::findValidIndices( ) - removing exclude sequence 345457 - 347935 PrimerSequence::findValidIndices( ) - removing exclude sequence 349104 - 349976 PrimerSequence::findValidIndices( ) - removing exclude sequence 350082 - 351564 PrimerSequence::findValidIndices( ) - removing exclude sequence 350087 - 351568 PrimerSequence::findValidIndices( ) - removing exclude sequence 350087 - 351307 PrimerSequence::findValidIndices( ) - removing exclude sequence 350090 - 351397 PrimerSequence::findValidIndices( ) - removing exclude sequence 350090 - 351573 PrimerSequence::findValidIndices( ) - removing exclude sequence 350090 - 351562 PrimerSequence::findValidIndices( ) - removing exclude sequence 350327 - 351472 PrimerSequence::findValidIndices( ) - removing exclude sequence 350746 - 351562 PrimerSequence::findValidIndices( ) - removing exclude sequence 351575 - 352428 PrimerSequence::findValidIndices( ) - removing exclude sequence 351578 - 352428 PrimerSequence::findValidIndices( ) - removing exclude sequence 352488 - 356604 PrimerSequence::findValidIndices( ) - removing exclude sequence 356606 - 357431 PrimerSequence::findValidIndices( ) - removing exclude sequence 356607 - 357425 PrimerSequence::findValidIndices( ) - removing exclude sequence 358093 - 447745 PrimerSequence::findValidIndices( ) - removing exclude sequence 359299 - 360155 PrimerSequence::findValidIndices( ) - removing exclude sequence 359300 - 360153 PrimerSequence::findValidIndices( ) - removing exclude sequence 359300 - 360153 PrimerSequence::findValidIndices( ) - removing exclude sequence 359301 - 360153 PrimerSequence::findValidIndices( ) - removing exclude sequence 359301 - 360153 PrimerSequence::findValidIndices( ) - removing exclude sequence 359303 - 360155 PrimerSequence::findValidIndices( ) - removing exclude sequence 359303 - 360155 PrimerSequence::findValidIndices( ) - removing exclude sequence 359303 - 360155 PrimerSequence::findValidIndices( ) - removing exclude sequence 359303 - 360155 PrimerSequence::findValidIndices( ) - removing exclude sequence 359303 - 360153 PrimerSequence::findValidIndices( ) - removing exclude sequence 360152 - 373173 PrimerSequence::findValidIndices( ) - removing exclude sequence 374191 - 399552 PrimerSequence::findValidIndices( ) - removing exclude sequence 386995 - 388340 PrimerSequence::findValidIndices( ) - removing exclude sequence 410108 - 414743 PrimerSequence::findValidIndices( ) - removing exclude sequence 414927 - 417283 PrimerSequence::findValidIndices( ) - removing exclude sequence 417276 - 420016 PrimerSequence::findValidIndices( ) - removing exclude sequence 421475 - 424469 PrimerSequence::findValidIndices( ) - removing exclude sequence 424469 - 430970 PrimerSequence::findValidIndices( ) - removing exclude sequence 433357 - 442492 PrimerSequence::findValidIndices( ) - removing exclude sequence 442490 - 443155 PrimerSequence::findValidIndices( ) - removing exclude sequence 442491 - 443510 PrimerSequence::findValidIndices( ) - removing exclude sequence 442492 - 443567 PrimerSequence::findValidIndices( ) - removing exclude sequence 442492 - 443575 PrimerSequence::findValidIndices( ) - removing exclude sequence 442492 - 443568 PrimerSequence::findValidIndices( ) - removing exclude sequence 442560 - 443568 PrimerSequence::findValidIndices( ) - removing exclude sequence 442938 - 443568 PrimerSequence::findValidIndices( ) - removing exclude sequence 443567 - 444583 PrimerSequence::findValidIndices( ) - removing exclude sequence 443567 - 444361 PrimerSequence::findValidIndices( ) - removing exclude sequence 444532 - 445733 PrimerSequence::findValidIndices( ) - removing exclude sequence 445150 - 445732 PrimerSequence::findValidIndices( ) - removing exclude sequence 448593 - 455939 PrimerSequence::findValidIndices( ) - removing exclude sequence 454409 - 455499 PrimerSequence::findValidIndices( ) - removing exclude sequence 456753 - 457806 PrimerSequence::findValidIndices( ) - removing exclude sequence 456753 - 457804 PrimerSequence::findValidIndices( ) - removing exclude sequence 456753 - 457805 PrimerSequence::findValidIndices( ) - removing exclude sequence 456753 - 535716 PrimerSequence::findValidIndices( ) - removing exclude sequence 457871 - 478690 PrimerSequence::findValidIndices( ) - removing exclude sequence 484820 - 499242 PrimerSequence::findValidIndices( ) - removing exclude sequence 499242 - 502122 PrimerSequence::findValidIndices( ) - removing exclude sequence 502100 - 503192 PrimerSequence::findValidIndices( ) - removing exclude sequence 502150 - 503194 PrimerSequence::findValidIndices( ) - removing exclude sequence 509100 - 510300 PrimerSequence::findValidIndices( ) - removing exclude sequence 510300 - 520935 PrimerSequence::findValidIndices( ) - removing exclude sequence 526183 - 533786 PrimerSequence::findValidIndices( ) - removing exclude sequence 535343 - 536402 PrimerSequence::findValidIndices( ) - removing exclude sequence 535343 - 536402 PrimerSequence::findValidIndices( ) - removing exclude sequence 536071 - 544051 PrimerSequence::findValidIndices( ) - removing exclude sequence 539869 - 544051 PrimerSequence::findValidIndices( ) - removing exclude sequence 544299 - 545087 PrimerSequence::findValidIndices( ) - removing exclude sequence 544300 - 545085 PrimerSequence::findValidIndices( ) - removing exclude sequence 545083 - 563416 PrimerSequence::findValidIndices( ) - removing exclude sequence 557341 - 558856 PrimerSequence::findValidIndices( ) - removing exclude sequence 559020 - 560803 PrimerSequence::findValidIndices( ) - removing exclude sequence 559020 - 562163 PrimerSequence::findValidIndices( ) - removing exclude sequence 559020 - 561857 PrimerSequence::findValidIndices( ) - removing exclude sequence 559082 - 561251 PrimerSequence::findValidIndices( ) - removing exclude sequence 559969 - 563137 PrimerSequence::findValidIndices( ) - removing exclude sequence 560170 - 561857 PrimerSequence::findValidIndices( ) - removing exclude sequence 560170 - 563137 PrimerSequence::findValidIndices( ) - removing exclude sequence 560170 - 563137 PrimerSequence::findValidIndices( ) - removing exclude sequence 560374 - 563137 PrimerSequence::findValidIndices( ) - removing exclude sequence 563413 - 569034 PrimerSequence::findValidIndices( ) - removing exclude sequence 566003 - 569034 PrimerSequence::findValidIndices( ) - removing exclude sequence 570900 - 572103 PrimerSequence::findValidIndices( ) - removing exclude sequence 572102 - 586079 PrimerSequence::findValidIndices( ) - removing exclude sequence 572102 - 576015 PrimerSequence::findValidIndices( ) - removing exclude sequence 576352 - 577761 PrimerSequence::findValidIndices( ) - removing exclude sequence 578494 - 579652 PrimerSequence::findValidIndices( ) - removing exclude sequence 578494 - 579655 PrimerSequence::findValidIndices( ) - removing exclude sequence 582893 - 589882 PrimerSequence::findValidIndices( ) - removing exclude sequence 586078 - 618300 PrimerSequence::findValidIndices( ) - removing exclude sequence 601838 - 607017 PrimerSequence::findValidIndices( ) - removing exclude sequence 607017 - 617088 PrimerSequence::findValidIndices( ) - removing exclude sequence 617240 - 618298 PrimerSequence::findValidIndices( ) - removing exclude sequence 617240 - 618299 PrimerSequence::findValidIndices( ) - removing exclude sequence 617240 - 618299 PrimerSequence::findValidIndices( ) - removing exclude sequence 617241 - 618298 PrimerSequence::findValidIndices( ) - removing exclude sequence 618624 - 619682 PrimerSequence::findValidIndices( ) - removing exclude sequence 618624 - 630172 PrimerSequence::findValidIndices( ) - removing exclude sequence 618624 - 619683 PrimerSequence::findValidIndices( ) - removing exclude sequence 618624 - 619689 PrimerSequence::findValidIndices( ) - removing exclude sequence 618625 - 619683 PrimerSequence::findValidIndices( ) - removing exclude sequence 619683 - 620256 PrimerSequence::findValidIndices( ) - removing exclude sequence 622074 - 630169 PrimerSequence::findValidIndices( ) - removing exclude sequence 630167 - 631290 PrimerSequence::findValidIndices( ) - removing exclude sequence 630170 - 631291 PrimerSequence::findValidIndices( ) - removing exclude sequence 631287 - 636925 PrimerSequence::findValidIndices( ) - removing exclude sequence 631287 - 634583 PrimerSequence::findValidIndices( ) - removing exclude sequence 634582 - 635890 PrimerSequence::findValidIndices( ) - removing exclude sequence 634583 - 635889 PrimerSequence::findValidIndices( ) - removing exclude sequence 634583 - 635890 PrimerSequence::findValidIndices( ) - removing exclude sequence 634584 - 635890 PrimerSequence::findValidIndices( ) - removing exclude sequence 634584 - 635890 PrimerSequence::findValidIndices( ) - removing exclude sequence 636932 - 662322 PrimerSequence::findValidIndices( ) - removing exclude sequence 637244 - 638756 PrimerSequence::findValidIndices( ) - removing exclude sequence 637837 - 638666 PrimerSequence::findValidIndices( ) - removing exclude sequence 638752 - 643493 PrimerSequence::findValidIndices( ) - removing exclude sequence 643823 - 644699 PrimerSequence::findValidIndices( ) - removing exclude sequence 646066 - 656899 PrimerSequence::findValidIndices( ) - removing exclude sequence 657961 - 659056 PrimerSequence::findValidIndices( ) - removing exclude sequence 659056 - 674937 PrimerSequence::findValidIndices( ) - removing exclude sequence 662319 - 676039 PrimerSequence::findValidIndices( ) - removing exclude sequence 674933 - 676409 PrimerSequence::findValidIndices( ) - removing exclude sequence 674933 - 676429 PrimerSequence::findValidIndices( ) - removing exclude sequence 674933 - 676413 PrimerSequence::findValidIndices( ) - removing exclude sequence 674937 - 679051 PrimerSequence::findValidIndices( ) - removing exclude sequence 674937 - 676412 PrimerSequence::findValidIndices( ) - removing exclude sequence 674937 - 676409 PrimerSequence::findValidIndices( ) - removing exclude sequence 674937 - 676412 PrimerSequence::findValidIndices( ) - removing exclude sequence 674937 - 677573 PrimerSequence::findValidIndices( ) - removing exclude sequence 676410 - 677592 PrimerSequence::findValidIndices( ) - removing exclude sequence 676410 - 677569 PrimerSequence::findValidIndices( ) - removing exclude sequence 676411 - 677569 PrimerSequence::findValidIndices( ) - removing exclude sequence 676412 - 677570 PrimerSequence::findValidIndices( ) - removing exclude sequence 677556 - 679049 PrimerSequence::findValidIndices( ) - removing exclude sequence 677571 - 718517 PrimerSequence::findValidIndices( ) - removing exclude sequence 677571 - 679050 PrimerSequence::findValidIndices( ) - removing exclude sequence 677574 - 679049 PrimerSequence::findValidIndices( ) - removing exclude sequence 677574 - 679046 PrimerSequence::findValidIndices( ) - removing exclude sequence 680308 - 684866 PrimerSequence::findValidIndices( ) - removing exclude sequence 685272 - 718025 PrimerSequence::findValidIndices( ) - removing exclude sequence 718507 - 739260 PrimerSequence::findValidIndices( ) - removing exclude sequence 721161 - 722368 PrimerSequence::findValidIndices( ) - removing exclude sequence 721161 - 722356 PrimerSequence::findValidIndices( ) - removing exclude sequence 722661 - 723985 PrimerSequence::findValidIndices( ) - removing exclude sequence 722668 - 723980 PrimerSequence::findValidIndices( ) - removing exclude sequence 722668 - 723980 PrimerSequence::findValidIndices( ) - removing exclude sequence 722669 - 723985 PrimerSequence::findValidIndices( ) - removing exclude sequence 722669 - 723980 PrimerSequence::findValidIndices( ) - removing exclude sequence 723981 - 724693 PrimerSequence::findValidIndices( ) - removing exclude sequence 726807 - 739260 PrimerSequence::findValidIndices( ) - removing exclude sequence 739298 - 740118 PrimerSequence::findValidIndices( ) - removing exclude sequence 739302 - 740771 PrimerSequence::findValidIndices( ) - removing exclude sequence 739302 - 740771 PrimerSequence::findValidIndices( ) - removing exclude sequence 740638 - 744463 PrimerSequence::findValidIndices( ) - removing exclude sequence 740775 - 744072 PrimerSequence::findValidIndices( ) - removing exclude sequence 745277 - 752823 PrimerSequence::findValidIndices( ) - removing exclude sequence 745823 - 751306 PrimerSequence::findValidIndices( ) - removing exclude sequence 751304 - 752829 PrimerSequence::findValidIndices( ) - removing exclude sequence 751760 - 752830 PrimerSequence::findValidIndices( ) - removing exclude sequence 751770 - 752829 PrimerSequence::findValidIndices( ) - removing exclude sequence 751772 - 752830 PrimerSequence::findValidIndices( ) - removing exclude sequence 751772 - 752830 PrimerSequence::findValidIndices( ) - removing exclude sequence 751772 - 752829 PrimerSequence::findValidIndices( ) - removing exclude sequence 751772 - 752829 PrimerSequence::findValidIndices( ) - removing exclude sequence 751772 - 752829 PrimerSequence::findValidIndices( ) - removing exclude sequence 752821 - 758110 PrimerSequence::findValidIndices( ) - removing exclude sequence 753499 - 754546 PrimerSequence::findValidIndices( ) - removing exclude sequence 753499 - 754546 PrimerSequence::findValidIndices( ) - removing exclude sequence 753499 - 754572 PrimerSequence::findValidIndices( ) - removing exclude sequence 753499 - 754572 PrimerSequence::findValidIndices( ) - removing exclude sequence 754572 - 758110 PrimerSequence::findValidIndices( ) - removing exclude sequence 758084 - 758961 PrimerSequence::findValidIndices( ) - removing exclude sequence 758084 - 758961 PrimerSequence::findValidIndices( ) - removing exclude sequence 758957 - 807047 PrimerSequence::findValidIndices( ) - removing exclude sequence 759114 - 759935 PrimerSequence::findValidIndices( ) - removing exclude sequence 759115 - 759935 PrimerSequence::findValidIndices( ) - removing exclude sequence 759116 - 759935 PrimerSequence::findValidIndices( ) - removing exclude sequence 759931 - 762311 PrimerSequence::findValidIndices( ) - removing exclude sequence 763545 - 764619 PrimerSequence::findValidIndices( ) - removing exclude sequence 763547 - 764619 PrimerSequence::findValidIndices( ) - removing exclude sequence 764701 - 765557 PrimerSequence::findValidIndices( ) - removing exclude sequence 764701 - 765549 PrimerSequence::findValidIndices( ) - removing exclude sequence 764704 - 765554 PrimerSequence::findValidIndices( ) - removing exclude sequence 765552 - 774631 PrimerSequence::findValidIndices( ) - removing exclude sequence 774620 - 775381 PrimerSequence::findValidIndices( ) - removing exclude sequence 780592 - 783001 PrimerSequence::findValidIndices( ) - removing exclude sequence 783161 - 784062 PrimerSequence::findValidIndices( ) - removing exclude sequence 784060 - 785120 PrimerSequence::findValidIndices( ) - removing exclude sequence 784062 - 785120 PrimerSequence::findValidIndices( ) - removing exclude sequence 784062 - 785120 PrimerSequence::findValidIndices( ) - removing exclude sequence 784063 - 785121 PrimerSequence::findValidIndices( ) - removing exclude sequence 784063 - 785120 PrimerSequence::findValidIndices( ) - removing exclude sequence 793372 - 804862 PrimerSequence::findValidIndices( ) - removing exclude sequence 805850 - 806968 PrimerSequence::findValidIndices( ) - removing exclude sequence 805850 - 806970 PrimerSequence::findValidIndices( ) - removing exclude sequence 807042 - 812044 PrimerSequence::findValidIndices( ) - removing exclude sequence 807661 - 814108 PrimerSequence::findValidIndices( ) - removing exclude sequence 812012 - 842069 PrimerSequence::findValidIndices( ) - removing exclude sequence 814941 - 827652 PrimerSequence::findValidIndices( ) - removing exclude sequence 829234 - 835002 PrimerSequence::findValidIndices( ) - removing exclude sequence 836116 - 840295 PrimerSequence::findValidIndices( ) - removing exclude sequence 842062 - 843228 PrimerSequence::findValidIndices( ) - removing exclude sequence 842063 - 843228 PrimerSequence::findValidIndices( ) - removing exclude sequence 844702 - 866205 PrimerSequence::findValidIndices( ) - removing exclude sequence 844702 - 848759 PrimerSequence::findValidIndices( ) - removing exclude sequence 849585 - 858982 PrimerSequence::findValidIndices( ) - removing exclude sequence 859636 - 865799 PrimerSequence::findValidIndices( ) - removing exclude sequence 867518 - 903179 PrimerSequence::findValidIndices( ) - removing exclude sequence 867935 - 877021 PrimerSequence::findValidIndices( ) - removing exclude sequence 877133 - 891109 PrimerSequence::findValidIndices( ) - removing exclude sequence 891270 - 891920 PrimerSequence::findValidIndices( ) - removing exclude sequence 891270 - 899917 PrimerSequence::findValidIndices( ) - removing exclude sequence 902466 - 911930 PrimerSequence::findValidIndices( ) - removing exclude sequence 903125 - 917036 PrimerSequence::findValidIndices( ) - removing exclude sequence 917029 - 917974 PrimerSequence::findValidIndices( ) - removing exclude sequence 918080 - 927568 PrimerSequence::findValidIndices( ) - removing exclude sequence 920124 - 940272 PrimerSequence::findValidIndices( ) - removing exclude sequence 927561 - 951843 PrimerSequence::findValidIndices( ) - removing exclude sequence 940268 - 949267 PrimerSequence::findValidIndices( ) - removing exclude sequence 950142 - 951466 PrimerSequence::findValidIndices( ) - removing exclude sequence 950147 - 951462 PrimerSequence::findValidIndices( ) - removing exclude sequence 951788 - 975824 PrimerSequence::findValidIndices( ) - removing exclude sequence 951902 - 967476 PrimerSequence::findValidIndices( ) - removing exclude sequence 974766 - 975824 PrimerSequence::findValidIndices( ) - removing exclude sequence 974769 - 975824 PrimerSequence::findValidIndices( ) - removing exclude sequence 974770 - 975824 PrimerSequence::findValidIndices( ) - removing exclude sequence 974770 - 975824 PrimerSequence::findValidIndices( ) - removing exclude sequence 974770 - 975824 PrimerSequence::findValidIndices( ) - removing exclude sequence 974771 - 975824 PrimerSequence::findValidIndices( ) - removing exclude sequence 975820 - 977300 PrimerSequence::findValidIndices( ) - removing exclude sequence 975820 - 977300 PrimerSequence::findValidIndices( ) - removing exclude sequence 975820 - 977305 PrimerSequence::findValidIndices( ) - removing exclude sequence 975820 - 976640 PrimerSequence::findValidIndices( ) - removing exclude sequence 975820 - 977299 PrimerSequence::findValidIndices( ) - removing exclude sequence 975820 - 977300 PrimerSequence::findValidIndices( ) - removing exclude sequence 975821 - 977301 PrimerSequence::findValidIndices( ) - removing exclude sequence 975821 - 977300 PrimerSequence::findValidIndices( ) - removing exclude sequence 975821 - 977300 PrimerSequence::findValidIndices( ) - removing exclude sequence 975824 - 977300 PrimerSequence::findValidIndices( ) - removing exclude sequence 975824 - 977296 PrimerSequence::findValidIndices( ) - removing exclude sequence 975824 - 977300 PrimerSequence::findValidIndices( ) - removing exclude sequence 975824 - 977300 PrimerSequence::findValidIndices( ) - removing exclude sequence 976079 - 977300 PrimerSequence::findValidIndices( ) - removing exclude sequence 977297 - 979285 PrimerSequence::findValidIndices( ) - removing exclude sequence 979275 - 980641 PrimerSequence::findValidIndices( ) - removing exclude sequence 979275 - 980641 PrimerSequence::findValidIndices( ) - removing exclude sequence 979277 - 980647 PrimerSequence::findValidIndices( ) - removing exclude sequence 979284 - 980635 PrimerSequence::findValidIndices( ) - removing exclude sequence 979413 - 980643 PrimerSequence::findValidIndices( ) - removing exclude sequence 979614 - 980641 PrimerSequence::findValidIndices( ) - removing exclude sequence 980635 - 982208 PrimerSequence::findValidIndices( ) - removing exclude sequence 983357 - 987871 PrimerSequence::findValidIndices( ) - removing exclude sequence 984162 - 985500 PrimerSequence::findValidIndices( ) - removing exclude sequence 985499 - 986360 PrimerSequence::findValidIndices( ) - removing exclude sequence 985499 - 986263 PrimerSequence::findValidIndices( ) - removing exclude sequence 987867 - 989539 PrimerSequence::findValidIndices( ) - removing exclude sequence 987867 - 988720 PrimerSequence::findValidIndices( ) - removing exclude sequence 987867 - 990517 PrimerSequence::findValidIndices( ) - removing exclude sequence 988703 - 989535 PrimerSequence::findValidIndices( ) - removing exclude sequence 988719 - 989535 PrimerSequence::findValidIndices( ) - removing exclude sequence 988719 - 989535 PrimerSequence::findValidIndices( ) - removing exclude sequence 990513 - 992469 PrimerSequence::findValidIndices( ) - removing exclude sequence 992459 - 993397 PrimerSequence::findValidIndices( ) - removing exclude sequence 993395 - 994444 PrimerSequence::findValidIndices( ) - removing exclude sequence 993396 - 994444 PrimerSequence::findValidIndices( ) - removing exclude sequence 993396 - 994470 PrimerSequence::findValidIndices( ) - removing exclude sequence 994470 - 1006069 PrimerSequence::findValidIndices( ) - removing exclude sequence 995779 - 996638 PrimerSequence::findValidIndices( ) - removing exclude sequence 996637 - 1001459 PrimerSequence::findValidIndices( ) - removing exclude sequence 1002300 - 1004577 PrimerSequence::findValidIndices( ) - removing exclude sequence 1006164 - 1049975 PrimerSequence::findValidIndices( ) - removing exclude sequence 1006164 - 1008161 PrimerSequence::findValidIndices( ) - removing exclude sequence 1008158 - 1013078 PrimerSequence::findValidIndices( ) - removing exclude sequence 1009836 - 1010294 PrimerSequence::findValidIndices( ) - removing exclude sequence 1013575 - 1026898 PrimerSequence::findValidIndices( ) - removing exclude sequence 1026898 - 1034309 PrimerSequence::findValidIndices( ) - removing exclude sequence 1034845 - 1049975 PrimerSequence::findValidIndices( ) - removing exclude sequence 1049975 - 1075573 PrimerSequence::findValidIndices( ) - removing exclude sequence 1049975 - 1080674 PrimerSequence::findValidIndices( ) - removing exclude sequence 1075570 - 1095169 PrimerSequence::findValidIndices( ) - removing exclude sequence 1080665 - 1094866 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095167 - 1096226 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095168 - 1096233 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095168 - 1096224 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095168 - 1096002 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095168 - 1096177 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095169 - 1096224 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095169 - 1096224 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095169 - 1096224 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095169 - 1096224 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095169 - 1096225 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095169 - 1096229 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095170 - 1096224 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095170 - 1096225 PrimerSequence::findValidIndices( ) - removing exclude sequence 1095170 - 1096224 PrimerSequence::findValidIndices( ) - removing exclude sequence 1096225 - 1113913 PrimerSequence::findValidIndices( ) - removing exclude sequence 1096353 - 1097837 PrimerSequence::findValidIndices( ) - removing exclude sequence 1096354 - 1097837 PrimerSequence::findValidIndices( ) - removing exclude sequence 1096358 - 1097837 PrimerSequence::findValidIndices( ) - removing exclude sequence 1096362 - 1097834 PrimerSequence::findValidIndices( ) - removing exclude sequence 1098712 - 1109868 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113909 - 1115073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113909 - 1115073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113909 - 1115073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113910 - 1115072 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113910 - 1115073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113910 - 1115073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113910 - 1115073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113910 - 1115073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113910 - 1115073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113910 - 1115074 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113912 - 1116549 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113913 - 1115069 PrimerSequence::findValidIndices( ) - removing exclude sequence 1113913 - 1115071 PrimerSequence::findValidIndices( ) - removing exclude sequence 1114115 - 1115072 PrimerSequence::findValidIndices( ) - removing exclude sequence 1115069 - 1116548 PrimerSequence::findValidIndices( ) - removing exclude sequence 1115070 - 1116549 PrimerSequence::findValidIndices( ) - removing exclude sequence 1115070 - 1116549 PrimerSequence::findValidIndices( ) - removing exclude sequence 1115070 - 1115734 PrimerSequence::findValidIndices( ) - removing exclude sequence 1115071 - 1116550 PrimerSequence::findValidIndices( ) - removing exclude sequence 1115071 - 1116550 PrimerSequence::findValidIndices( ) - removing exclude sequence 1115873 - 1116549 PrimerSequence::findValidIndices( ) - removing exclude sequence 1116546 - 1119259 PrimerSequence::findValidIndices( ) - removing exclude sequence 1116552 - 1119844 PrimerSequence::findValidIndices( ) - removing exclude sequence 1119257 - 1131083 PrimerSequence::findValidIndices( ) - removing exclude sequence 1119257 - 1119716 PrimerSequence::findValidIndices( ) - removing exclude sequence 1120165 - 1131344 PrimerSequence::findValidIndices( ) - removing exclude sequence 1131345 - 1132694 PrimerSequence::findValidIndices( ) - removing exclude sequence 1132694 - 1177632 PrimerSequence::findValidIndices( ) - removing exclude sequence 1132704 - 1152174 PrimerSequence::findValidIndices( ) - removing exclude sequence 1152724 - 1153781 PrimerSequence::findValidIndices( ) - removing exclude sequence 1154161 - 1169313 PrimerSequence::findValidIndices( ) - removing exclude sequence 1169653 - 1170418 PrimerSequence::findValidIndices( ) - removing exclude sequence 1171845 - 1172507 PrimerSequence::findValidIndices( ) - removing exclude sequence 1172507 - 1176455 PrimerSequence::findValidIndices( ) - removing exclude sequence 1177629 - 1178788 PrimerSequence::findValidIndices( ) - removing exclude sequence 1177630 - 1178792 PrimerSequence::findValidIndices( ) - removing exclude sequence 1180814 - 1201823 PrimerSequence::findValidIndices( ) - removing exclude sequence 1183888 - 1185111 PrimerSequence::findValidIndices( ) - removing exclude sequence 1183890 - 1185111 PrimerSequence::findValidIndices( ) - removing exclude sequence 1183890 - 1185111 PrimerSequence::findValidIndices( ) - removing exclude sequence 1183891 - 1185111 PrimerSequence::findValidIndices( ) - removing exclude sequence 1183894 - 1185111 PrimerSequence::findValidIndices( ) - removing exclude sequence 1185110 - 1185475 PrimerSequence::findValidIndices( ) - removing exclude sequence 1185110 - 1186169 PrimerSequence::findValidIndices( ) - removing exclude sequence 1185110 - 1186170 PrimerSequence::findValidIndices( ) - removing exclude sequence 1185111 - 1186170 PrimerSequence::findValidIndices( ) - removing exclude sequence 1185112 - 1186170 PrimerSequence::findValidIndices( ) - removing exclude sequence 1185112 - 1186172 PrimerSequence::findValidIndices( ) - removing exclude sequence 1185117 - 1186170 PrimerSequence::findValidIndices( ) - removing exclude sequence 1201820 - 1211325 PrimerSequence::findValidIndices( ) - removing exclude sequence 1205326 - 1206651 PrimerSequence::findValidIndices( ) - removing exclude sequence 1206646 - 1207499 PrimerSequence::findValidIndices( ) - removing exclude sequence 1206649 - 1207499 PrimerSequence::findValidIndices( ) - removing exclude sequence 1206649 - 1207504 PrimerSequence::findValidIndices( ) - removing exclude sequence 1207501 - 1211325 PrimerSequence::findValidIndices( ) - removing exclude sequence 1214784 - 1324315 PrimerSequence::findValidIndices( ) - removing exclude sequence 1218374 - 1246522 PrimerSequence::findValidIndices( ) - removing exclude sequence 1246668 - 1271171 PrimerSequence::findValidIndices( ) - removing exclude sequence 1272405 - 1273232 PrimerSequence::findValidIndices( ) - removing exclude sequence 1273244 - 1274297 PrimerSequence::findValidIndices( ) - removing exclude sequence 1274292 - 1275462 PrimerSequence::findValidIndices( ) - removing exclude sequence 1278978 - 1288203 PrimerSequence::findValidIndices( ) - removing exclude sequence 1288735 - 1324315 PrimerSequence::findValidIndices( ) - removing exclude sequence 1321501 - 1324316 PrimerSequence::findValidIndices( ) - removing exclude sequence 1322128 - 1324316 PrimerSequence::findValidIndices( ) - removing exclude sequence 1322576 - 1324312 PrimerSequence::findValidIndices( ) - removing exclude sequence 1324023 - 1327712 PrimerSequence::findValidIndices( ) - removing exclude sequence 1335775 - 1340250 PrimerSequence::findValidIndices( ) - removing exclude sequence 1337892 - 1340250 PrimerSequence::findValidIndices( ) - removing exclude sequence 1337892 - 1340250 PrimerSequence::findValidIndices( ) - removing exclude sequence 1337892 - 1340250 PrimerSequence::findValidIndices( ) - removing exclude sequence 1337892 - 1340250 PrimerSequence::findValidIndices( ) - removing exclude sequence 1338037 - 1340250 PrimerSequence::findValidIndices( ) - removing exclude sequence 1338485 - 1341895 PrimerSequence::findValidIndices( ) - removing exclude sequence 1338485 - 1341895 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343417 - 1344237 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343418 - 1344914 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343418 - 1344237 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343419 - 1344237 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343422 - 1344894 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343422 - 1344894 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343422 - 1344237 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343422 - 1344894 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343512 - 1344657 PrimerSequence::findValidIndices( ) - removing exclude sequence 1343677 - 1344898 PrimerSequence::findValidIndices( ) - removing exclude sequence 1344234 - 1344898 PrimerSequence::findValidIndices( ) - removing exclude sequence 1344234 - 1344898 PrimerSequence::findValidIndices( ) - removing exclude sequence 1346086 - 1346459 PrimerSequence::findValidIndices( ) - removing exclude sequence 1346455 - 1347935 PrimerSequence::findValidIndices( ) - removing exclude sequence 1346456 - 1347936 PrimerSequence::findValidIndices( ) - removing exclude sequence 1346457 - 1347941 PrimerSequence::findValidIndices( ) - removing exclude sequence 1347914 - 1354123 PrimerSequence::findValidIndices( ) - removing exclude sequence 1347932 - 1348891 PrimerSequence::findValidIndices( ) - removing exclude sequence 1347933 - 1349096 PrimerSequence::findValidIndices( ) - removing exclude sequence 1347934 - 1349097 PrimerSequence::findValidIndices( ) - removing exclude sequence 1347934 - 1349097 PrimerSequence::findValidIndices( ) - removing exclude sequence 1347934 - 1349097 PrimerSequence::findValidIndices( ) - removing exclude sequence 1350149 - 1354123 PrimerSequence::findValidIndices( ) - removing exclude sequence 1354118 - 1356764 PrimerSequence::findValidIndices( ) - removing exclude sequence 1354120 - 1355599 PrimerSequence::findValidIndices( ) - removing exclude sequence 1354121 - 1355605 PrimerSequence::findValidIndices( ) - removing exclude sequence 1355578 - 1356760 PrimerSequence::findValidIndices( ) - removing exclude sequence 1355597 - 1356760 PrimerSequence::findValidIndices( ) - removing exclude sequence 1355628 - 1356761 PrimerSequence::findValidIndices( ) - removing exclude sequence 1356757 - 1376442 PrimerSequence::findValidIndices( ) - removing exclude sequence 1356757 - 1360557 PrimerSequence::findValidIndices( ) - removing exclude sequence 1369012 - 1376442 PrimerSequence::findValidIndices( ) - removing exclude sequence 1376437 - 1377602 PrimerSequence::findValidIndices( ) - removing exclude sequence 1376437 - 1377602 PrimerSequence::findValidIndices( ) - removing exclude sequence 1376438 - 1377602 PrimerSequence::findValidIndices( ) - removing exclude sequence 1376439 - 1377602 PrimerSequence::findValidIndices( ) - removing exclude sequence 1377598 - 1385122 PrimerSequence::findValidIndices( ) - removing exclude sequence 1377598 - 1385063 PrimerSequence::findValidIndices( ) - removing exclude sequence 1385119 - 1387164 PrimerSequence::findValidIndices( ) - removing exclude sequence 1387160 - 1388636 PrimerSequence::findValidIndices( ) - removing exclude sequence 1387160 - 1388640 PrimerSequence::findValidIndices( ) - removing exclude sequence 1387160 - 1388639 PrimerSequence::findValidIndices( ) - removing exclude sequence 1387160 - 1388640 PrimerSequence::findValidIndices( ) - removing exclude sequence 1387161 - 1388640 PrimerSequence::findValidIndices( ) - removing exclude sequence 1387161 - 1388641 PrimerSequence::findValidIndices( ) - removing exclude sequence 1388637 - 1389602 PrimerSequence::findValidIndices( ) - removing exclude sequence 1389821 - 1391907 PrimerSequence::findValidIndices( ) - removing exclude sequence 1393467 - 1394780 PrimerSequence::findValidIndices( ) - removing exclude sequence 1396947 - 1401633 PrimerSequence::findValidIndices( ) - removing exclude sequence 1397958 - 1401009 PrimerSequence::findValidIndices( ) - removing exclude sequence 1401638 - 1402798 PrimerSequence::findValidIndices( ) - removing exclude sequence 1402865 - 1404126 PrimerSequence::findValidIndices( ) - removing exclude sequence 1403298 - 1408138 PrimerSequence::findValidIndices( ) - removing exclude sequence 1404122 - 1409975 PrimerSequence::findValidIndices( ) - removing exclude sequence 1409976 - 1410896 PrimerSequence::findValidIndices( ) - removing exclude sequence 1409976 - 1474377 PrimerSequence::findValidIndices( ) - removing exclude sequence 1410986 - 1418327 PrimerSequence::findValidIndices( ) - removing exclude sequence 1419211 - 1427797 PrimerSequence::findValidIndices( ) - removing exclude sequence 1429205 - 1441931 PrimerSequence::findValidIndices( ) - removing exclude sequence 1448739 - 1467931 PrimerSequence::findValidIndices( ) - removing exclude sequence 1471832 - 1474546 PrimerSequence::findValidIndices( ) - removing exclude sequence 1471832 - 1472830 PrimerSequence::findValidIndices( ) - removing exclude sequence 1472829 - 1474143 PrimerSequence::findValidIndices( ) - removing exclude sequence 1472830 - 1474142 PrimerSequence::findValidIndices( ) - removing exclude sequence 1472831 - 1474143 PrimerSequence::findValidIndices( ) - removing exclude sequence 1474368 - 1479681 PrimerSequence::findValidIndices( ) - removing exclude sequence 1474543 - 1480631 PrimerSequence::findValidIndices( ) - removing exclude sequence 1478780 - 1480669 PrimerSequence::findValidIndices( ) - removing exclude sequence 1480665 - 1481829 PrimerSequence::findValidIndices( ) - removing exclude sequence 1480666 - 1481829 PrimerSequence::findValidIndices( ) - removing exclude sequence 1480666 - 1481829 PrimerSequence::findValidIndices( ) - removing exclude sequence 1480666 - 1481830 PrimerSequence::findValidIndices( ) - removing exclude sequence 1480666 - 1481829 PrimerSequence::findValidIndices( ) - removing exclude sequence 1480666 - 1481829 PrimerSequence::findValidIndices( ) - removing exclude sequence 1480666 - 1481829 PrimerSequence::findValidIndices( ) - removing exclude sequence 1481849 - 1482364 PrimerSequence::findValidIndices( ) - removing exclude sequence 1481852 - 1482364 PrimerSequence::findValidIndices( ) - removing exclude sequence 1481852 - 1482364 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482026 - 1482364 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482353 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482362 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482363 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482363 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482363 - 1483421 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482364 - 1483426 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482364 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482364 - 1485651 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482364 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482364 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482364 - 1483427 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482364 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482586 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1482586 - 1483419 PrimerSequence::findValidIndices( ) - removing exclude sequence 1484171 - 1485651 PrimerSequence::findValidIndices( ) - removing exclude sequence 1484171 - 1485647 PrimerSequence::findValidIndices( ) - removing exclude sequence 1484175 - 1485647 PrimerSequence::findValidIndices( ) - removing exclude sequence 1485648 - 1486813 PrimerSequence::findValidIndices( ) - removing exclude sequence 1485853 - 1486811 PrimerSequence::findValidIndices( ) - removing exclude sequence 1486792 - 1502466 PrimerSequence::findValidIndices( ) - removing exclude sequence 1486808 - 1502519 PrimerSequence::findValidIndices( ) - removing exclude sequence 1503203 - 1556205 PrimerSequence::findValidIndices( ) - removing exclude sequence 1508730 - 1517377 PrimerSequence::findValidIndices( ) - removing exclude sequence 1520681 - 1554522 PrimerSequence::findValidIndices( ) - removing exclude sequence 1558079 - 1558996 PrimerSequence::findValidIndices( ) - removing exclude sequence 1561255 - 1562561 PrimerSequence::findValidIndices( ) - removing exclude sequence 1562873 - 1567754 PrimerSequence::findValidIndices( ) - removing exclude sequence 1567889 - 1569054 PrimerSequence::findValidIndices( ) - removing exclude sequence 1567895 - 1569058 PrimerSequence::findValidIndices( ) - removing exclude sequence 1569055 - 1571625 PrimerSequence::findValidIndices( ) - removing exclude sequence 1569984 - 1572790 PrimerSequence::findValidIndices( ) - removing exclude sequence 1572787 - 1573642 PrimerSequence::findValidIndices( ) - removing exclude sequence 1572787 - 1573642 PrimerSequence::findValidIndices( ) - removing exclude sequence 1572787 - 1573642 PrimerSequence::findValidIndices( ) - removing exclude sequence 1572787 - 1573642 PrimerSequence::findValidIndices( ) - removing exclude sequence 1573674 - 1574837 PrimerSequence::findValidIndices( ) - removing exclude sequence 1574238 - 1576000 PrimerSequence::findValidIndices( ) - removing exclude sequence 1578926 - 1580406 PrimerSequence::findValidIndices( ) - removing exclude sequence 1578926 - 1580406 PrimerSequence::findValidIndices( ) - removing exclude sequence 1578930 - 1580406 PrimerSequence::findValidIndices( ) - removing exclude sequence 1583617 - 1586167 PrimerSequence::findValidIndices( ) - removing exclude sequence 1583619 - 1586167 PrimerSequence::findValidIndices( ) - removing exclude sequence 1583620 - 1587003 PrimerSequence::findValidIndices( ) - removing exclude sequence 1583620 - 1585483 PrimerSequence::findValidIndices( ) - removing exclude sequence 1583628 - 1589797 PrimerSequence::findValidIndices( ) - removing exclude sequence 1584377 - 1586163 PrimerSequence::findValidIndices( ) - removing exclude sequence 1587002 - 1589674 PrimerSequence::findValidIndices( ) - removing exclude sequence 1587002 - 1588868 PrimerSequence::findValidIndices( ) - removing exclude sequence 1587002 - 1589962 PrimerSequence::findValidIndices( ) - removing exclude sequence 1590315 - 1591076 PrimerSequence::findValidIndices( ) - removing exclude sequence 1590315 - 1591085 PrimerSequence::findValidIndices( ) - removing exclude sequence 1590315 - 1591080 PrimerSequence::findValidIndices( ) - removing exclude sequence 1590315 - 1591080 PrimerSequence::findValidIndices( ) - removing exclude sequence 1590315 - 1592244 PrimerSequence::findValidIndices( ) - removing exclude sequence 1590315 - 1591076 PrimerSequence::findValidIndices( ) - removing exclude sequence 1590315 - 1591082 PrimerSequence::findValidIndices( ) - removing exclude sequence 1590416 - 1591073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1591057 - 1592240 PrimerSequence::findValidIndices( ) - removing exclude sequence 1591077 - 1592239 PrimerSequence::findValidIndices( ) - removing exclude sequence 1591077 - 1592239 PrimerSequence::findValidIndices( ) - removing exclude sequence 1591077 - 1592239 PrimerSequence::findValidIndices( ) - removing exclude sequence 1592236 - 1636399 PrimerSequence::findValidIndices( ) - removing exclude sequence 1592236 - 1602698 PrimerSequence::findValidIndices( ) - removing exclude sequence 1602696 - 1625994 PrimerSequence::findValidIndices( ) - removing exclude sequence 1628501 - 1636399 PrimerSequence::findValidIndices( ) - removing exclude sequence 1631967 - 1633206 PrimerSequence::findValidIndices( ) - removing exclude sequence 1637455 - 1647988 PrimerSequence::findValidIndices( ) - removing exclude sequence 1637455 - 1642584 PrimerSequence::findValidIndices( ) - removing exclude sequence 1642580 - 1644195 PrimerSequence::findValidIndices( ) - removing exclude sequence 1642580 - 1644198 PrimerSequence::findValidIndices( ) - removing exclude sequence 1642584 - 1643790 PrimerSequence::findValidIndices( ) - removing exclude sequence 1642585 - 1644198 PrimerSequence::findValidIndices( ) - removing exclude sequence 1645150 - 1647787 PrimerSequence::findValidIndices( ) - removing exclude sequence 1645150 - 1648498 PrimerSequence::findValidIndices( ) - removing exclude sequence 1645150 - 1648090 PrimerSequence::findValidIndices( ) - removing exclude sequence 1645213 - 1647379 PrimerSequence::findValidIndices( ) - removing exclude sequence 1646100 - 1652694 PrimerSequence::findValidIndices( ) - removing exclude sequence 1646502 - 1652694 PrimerSequence::findValidIndices( ) - removing exclude sequence 1646604 - 1652694 PrimerSequence::findValidIndices( ) - removing exclude sequence 1646706 - 1652694 PrimerSequence::findValidIndices( ) - removing exclude sequence 1650324 - 1652694 PrimerSequence::findValidIndices( ) - removing exclude sequence 1651211 - 1653688 PrimerSequence::findValidIndices( ) - removing exclude sequence 1651211 - 1653688 PrimerSequence::findValidIndices( ) - removing exclude sequence 1651211 - 1653688 PrimerSequence::findValidIndices( ) - removing exclude sequence 1651211 - 1707487 PrimerSequence::findValidIndices( ) - removing exclude sequence 1653688 - 1685780 PrimerSequence::findValidIndices( ) - removing exclude sequence 1696205 - 1697061 PrimerSequence::findValidIndices( ) - removing exclude sequence 1696205 - 1697059 PrimerSequence::findValidIndices( ) - removing exclude sequence 1697055 - 1707375 PrimerSequence::findValidIndices( ) - removing exclude sequence 1707413 - 1731205 PrimerSequence::findValidIndices( ) - removing exclude sequence 1707533 - 1727683 PrimerSequence::findValidIndices( ) - removing exclude sequence 1731200 - 1732055 PrimerSequence::findValidIndices( ) - removing exclude sequence 1731201 - 1732057 PrimerSequence::findValidIndices( ) - removing exclude sequence 1731203 - 1732057 PrimerSequence::findValidIndices( ) - removing exclude sequence 1731203 - 1732053 PrimerSequence::findValidIndices( ) - removing exclude sequence 1732048 - 1779392 PrimerSequence::findValidIndices( ) - removing exclude sequence 1732519 - 1750980 PrimerSequence::findValidIndices( ) - removing exclude sequence 1753080 - 1757541 PrimerSequence::findValidIndices( ) - removing exclude sequence 1754684 - 1756029 PrimerSequence::findValidIndices( ) - removing exclude sequence 1754684 - 1756029 PrimerSequence::findValidIndices( ) - removing exclude sequence 1759075 - 1768793 PrimerSequence::findValidIndices( ) - removing exclude sequence 1769609 - 1778940 PrimerSequence::findValidIndices( ) - removing exclude sequence 1779393 - 1780865 PrimerSequence::findValidIndices( ) - removing exclude sequence 1779394 - 1780865 PrimerSequence::findValidIndices( ) - removing exclude sequence 1780049 - 1780869 PrimerSequence::findValidIndices( ) - removing exclude sequence 1781297 - 1816456 PrimerSequence::findValidIndices( ) - removing exclude sequence 1785513 - 1789688 PrimerSequence::findValidIndices( ) - removing exclude sequence 1789688 - 1813119 PrimerSequence::findValidIndices( ) - removing exclude sequence 1813112 - 1813974 PrimerSequence::findValidIndices( ) - removing exclude sequence 1813114 - 1813970 PrimerSequence::findValidIndices( ) - removing exclude sequence 1813117 - 1814328 PrimerSequence::findValidIndices( ) - removing exclude sequence 1813846 - 1814630 PrimerSequence::findValidIndices( ) - removing exclude sequence 1813966 - 1814629 PrimerSequence::findValidIndices( ) - removing exclude sequence 1816454 - 1817311 PrimerSequence::findValidIndices( ) - removing exclude sequence 1817304 - 1854891 PrimerSequence::findValidIndices( ) - removing exclude sequence 1817383 - 1823695 PrimerSequence::findValidIndices( ) - removing exclude sequence 1831607 - 1832662 PrimerSequence::findValidIndices( ) - removing exclude sequence 1831607 - 1832666 PrimerSequence::findValidIndices( ) - removing exclude sequence 1831607 - 1832662 PrimerSequence::findValidIndices( ) - removing exclude sequence 1839250 - 1842895 PrimerSequence::findValidIndices( ) - removing exclude sequence 1842895 - 1846619 PrimerSequence::findValidIndices( ) - removing exclude sequence 1849573 - 1854995 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855643 - 1857125 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855645 - 1857125 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855645 - 1856956 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855645 - 1857125 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855645 - 1856309 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855646 - 1856729 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855649 - 1857121 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855649 - 1856866 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855649 - 1857121 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855649 - 1857121 PrimerSequence::findValidIndices( ) - removing exclude sequence 1855649 - 1857125 PrimerSequence::findValidIndices( ) - removing exclude sequence 1859860 - 1866767 PrimerSequence::findValidIndices( ) - removing exclude sequence 1867315 - 1874494 PrimerSequence::findValidIndices( ) - removing exclude sequence 1868448 - 1871121 PrimerSequence::findValidIndices( ) - removing exclude sequence 1871955 - 1874502 PrimerSequence::findValidIndices( ) - removing exclude sequence 1871955 - 1874499 PrimerSequence::findValidIndices( ) - removing exclude sequence 1871959 - 1873745 PrimerSequence::findValidIndices( ) - removing exclude sequence 1872642 - 1874506 PrimerSequence::findValidIndices( ) - removing exclude sequence 1875613 - 1877625 PrimerSequence::findValidIndices( ) - removing exclude sequence 1875767 - 1877624 PrimerSequence::findValidIndices( ) - removing exclude sequence 1875767 - 1877621 PrimerSequence::findValidIndices( ) - removing exclude sequence 1881651 - 1882632 PrimerSequence::findValidIndices( ) - removing exclude sequence 1881651 - 1882630 PrimerSequence::findValidIndices( ) - removing exclude sequence 1881651 - 1882629 PrimerSequence::findValidIndices( ) - removing exclude sequence 1881651 - 1882628 PrimerSequence::findValidIndices( ) - removing exclude sequence 1882643 - 1884908 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884902 - 1886068 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884903 - 1886069 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884904 - 1886068 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884904 - 1886067 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884904 - 1886070 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884904 - 1886068 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884904 - 1886073 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884904 - 1886068 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884904 - 1886008 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884904 - 1886068 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884905 - 1886069 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884905 - 1886069 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884905 - 1886069 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884905 - 1886069 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884905 - 1886068 PrimerSequence::findValidIndices( ) - removing exclude sequence 1884906 - 1886069 PrimerSequence::findValidIndices( ) - removing exclude sequence 1886049 - 1895278 PrimerSequence::findValidIndices( ) - removing exclude sequence 1886665 - 1894843 PrimerSequence::findValidIndices( ) - removing exclude sequence 1896092 - 1897143 PrimerSequence::findValidIndices( ) - removing exclude sequence 1896092 - 1908577 PrimerSequence::findValidIndices( ) - removing exclude sequence 1897144 - 1908577 PrimerSequence::findValidIndices( ) - removing exclude sequence 1909008 - 1910126 PrimerSequence::findValidIndices( ) - removing exclude sequence 1910123 - 1922653 PrimerSequence::findValidIndices( ) - removing exclude sequence 1910123 - 1936416 PrimerSequence::findValidIndices( ) - removing exclude sequence 1922652 - 1970122 PrimerSequence::findValidIndices( ) - removing exclude sequence 1936609 - 1938081 PrimerSequence::findValidIndices( ) - removing exclude sequence 1938176 - 1944075 PrimerSequence::findValidIndices( ) - removing exclude sequence 1944075 - 1965266 PrimerSequence::findValidIndices( ) - removing exclude sequence 1969062 - 1970123 PrimerSequence::findValidIndices( ) - removing exclude sequence 1969063 - 1970124 PrimerSequence::findValidIndices( ) - removing exclude sequence 1969063 - 1970122 PrimerSequence::findValidIndices( ) - removing exclude sequence 1969065 - 1970125 PrimerSequence::findValidIndices( ) - removing exclude sequence 1969071 - 1970123 PrimerSequence::findValidIndices( ) - removing exclude sequence 1970527 - 1971833 PrimerSequence::findValidIndices( ) - removing exclude sequence 1970527 - 1971833 PrimerSequence::findValidIndices( ) - removing exclude sequence 1970527 - 1971152 PrimerSequence::findValidIndices( ) - removing exclude sequence 1970528 - 1971834 PrimerSequence::findValidIndices( ) - removing exclude sequence 1970528 - 1971833 PrimerSequence::findValidIndices( ) - removing exclude sequence 1970528 - 1971833 PrimerSequence::findValidIndices( ) - removing exclude sequence 1970528 - 1975043 PrimerSequence::findValidIndices( ) - removing exclude sequence 1970528 - 1971833 PrimerSequence::findValidIndices( ) - removing exclude sequence 1975039 - 1975896 PrimerSequence::findValidIndices( ) - removing exclude sequence 1975891 - 2030165 PrimerSequence::findValidIndices( ) - removing exclude sequence 1977386 - 1981308 PrimerSequence::findValidIndices( ) - removing exclude sequence 1982064 - 2026590 PrimerSequence::findValidIndices( ) - removing exclude sequence 2029501 - 2030165 PrimerSequence::findValidIndices( ) - removing exclude sequence 2029501 - 2030165 PrimerSequence::findValidIndices( ) - removing exclude sequence 2029501 - 2030165 PrimerSequence::findValidIndices( ) - removing exclude sequence 2029501 - 2030165 PrimerSequence::findValidIndices( ) - removing exclude sequence 2029502 - 2030165 PrimerSequence::findValidIndices( ) - removing exclude sequence 2029505 - 2030165 PrimerSequence::findValidIndices( ) - removing exclude sequence 2029505 - 2031829 PrimerSequence::findValidIndices( ) - removing exclude sequence 2029505 - 2032985 PrimerSequence::findValidIndices( ) - removing exclude sequence 2029505 - 2030165 PrimerSequence::findValidIndices( ) - removing exclude sequence 2030997 - 2031833 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031013 - 2035749 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031812 - 2033011 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031812 - 2032989 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031830 - 2033012 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031830 - 2032993 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031830 - 2032995 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031831 - 2032989 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031833 - 2032990 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031834 - 2032993 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031834 - 2032989 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031834 - 2032940 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031839 - 2032993 PrimerSequence::findValidIndices( ) - removing exclude sequence 2031891 - 2032993 PrimerSequence::findValidIndices( ) - removing exclude sequence 2032990 - 2033810 PrimerSequence::findValidIndices( ) - removing exclude sequence 2032991 - 2034466 PrimerSequence::findValidIndices( ) - removing exclude sequence 2032994 - 2034470 PrimerSequence::findValidIndices( ) - removing exclude sequence 2035747 - 2056515 PrimerSequence::findValidIndices( ) - removing exclude sequence 2035843 - 2043445 PrimerSequence::findValidIndices( ) - removing exclude sequence 2043651 - 2067071 PrimerSequence::findValidIndices( ) - removing exclude sequence 2056467 - 2062320 PrimerSequence::findValidIndices( ) - removing exclude sequence 2063059 - 2067313 PrimerSequence::findValidIndices( ) - removing exclude sequence 2067310 - 2081447 PrimerSequence::findValidIndices( ) - removing exclude sequence 2068446 - 2069515 PrimerSequence::findValidIndices( ) - removing exclude sequence 2068454 - 2069514 PrimerSequence::findValidIndices( ) - removing exclude sequence 2068454 - 2069513 PrimerSequence::findValidIndices( ) - removing exclude sequence 2068454 - 2069517 PrimerSequence::findValidIndices( ) - removing exclude sequence 2068456 - 2069513 PrimerSequence::findValidIndices( ) - removing exclude sequence 2068456 - 2069507 PrimerSequence::findValidIndices( ) - removing exclude sequence 2068456 - 2069513 PrimerSequence::findValidIndices( ) - removing exclude sequence 2070433 - 2080751 PrimerSequence::findValidIndices( ) - removing exclude sequence 2081900 - 2083508 PrimerSequence::findValidIndices( ) - removing exclude sequence 2081902 - 2083507 PrimerSequence::findValidIndices( ) - removing exclude sequence 2082304 - 2083508 PrimerSequence::findValidIndices( ) - removing exclude sequence 2082951 - 2083509 PrimerSequence::findValidIndices( ) - removing exclude sequence 2083508 - 2085984 PrimerSequence::findValidIndices( ) - removing exclude sequence 2083508 - 2085984 PrimerSequence::findValidIndices( ) - removing exclude sequence 2083508 - 2085984 PrimerSequence::findValidIndices( ) - removing exclude sequence 2083508 - 2085984 PrimerSequence::findValidIndices( ) - removing exclude sequence 2084393 - 2087051 PrimerSequence::findValidIndices( ) - removing exclude sequence 2084393 - 2087049 PrimerSequence::findValidIndices( ) - removing exclude sequence 2084393 - 2087049 PrimerSequence::findValidIndices( ) - removing exclude sequence 2084393 - 2086938 PrimerSequence::findValidIndices( ) - removing exclude sequence 2084699 - 2086938 PrimerSequence::findValidIndices( ) - removing exclude sequence 2084700 - 2086938 PrimerSequence::findValidIndices( ) - removing exclude sequence 2087049 - 2088525 PrimerSequence::findValidIndices( ) - removing exclude sequence 2087053 - 2088529 PrimerSequence::findValidIndices( ) - removing exclude sequence 2087053 - 2097910 PrimerSequence::findValidIndices( ) - removing exclude sequence 2089698 - 2095821 PrimerSequence::findValidIndices( ) - removing exclude sequence 2097124 - 2097910 PrimerSequence::findValidIndices( ) - removing exclude sequence 2097125 - 2097911 PrimerSequence::findValidIndices( ) - removing exclude sequence 2098122 - 2104388 PrimerSequence::findValidIndices( ) - removing exclude sequence 2098163 - 2099648 PrimerSequence::findValidIndices( ) - removing exclude sequence 2103804 - 2104388 PrimerSequence::findValidIndices( ) - removing exclude sequence 2104384 - 2105205 PrimerSequence::findValidIndices( ) - removing exclude sequence 2104384 - 2105205 PrimerSequence::findValidIndices( ) - removing exclude sequence 2106714 - 2107877 PrimerSequence::findValidIndices( ) - removing exclude sequence 2106714 - 2107878 PrimerSequence::findValidIndices( ) - removing exclude sequence 2107874 - 2152415 PrimerSequence::findValidIndices( ) - removing exclude sequence 2107875 - 2108790 PrimerSequence::findValidIndices( ) - removing exclude sequence 2108882 - 2118080 PrimerSequence::findValidIndices( ) - removing exclude sequence 2122180 - 2123655 PrimerSequence::findValidIndices( ) - removing exclude sequence 2122184 - 2123655 PrimerSequence::findValidIndices( ) - removing exclude sequence 2122839 - 2123652 PrimerSequence::findValidIndices( ) - removing exclude sequence 2123801 - 2125107 PrimerSequence::findValidIndices( ) - removing exclude sequence 2123801 - 2125107 PrimerSequence::findValidIndices( ) - removing exclude sequence 2123802 - 2124837 PrimerSequence::findValidIndices( ) - removing exclude sequence 2123802 - 2125108 PrimerSequence::findValidIndices( ) - removing exclude sequence 2123802 - 2125107 PrimerSequence::findValidIndices( ) - removing exclude sequence 2123802 - 2125107 PrimerSequence::findValidIndices( ) - removing exclude sequence 2127758 - 2137380 PrimerSequence::findValidIndices( ) - removing exclude sequence 2137374 - 2138196 PrimerSequence::findValidIndices( ) - removing exclude sequence 2137377 - 2138197 PrimerSequence::findValidIndices( ) - removing exclude sequence 2137377 - 2138196 PrimerSequence::findValidIndices( ) - removing exclude sequence 2138992 - 2149538 PrimerSequence::findValidIndices( ) - removing exclude sequence 2149712 - 2184007 PrimerSequence::findValidIndices( ) - removing exclude sequence 2152412 - 2207684 PrimerSequence::findValidIndices( ) - removing exclude sequence 2184891 - 2202218 PrimerSequence::findValidIndices( ) - removing exclude sequence 2207680 - 2227160 PrimerSequence::findValidIndices( ) - removing exclude sequence 2209782 - 2227160 PrimerSequence::findValidIndices( ) - removing exclude sequence 2228216 - 2276689 PrimerSequence::findValidIndices( ) - removing exclude sequence 2230742 - 2232357 PrimerSequence::findValidIndices( ) - removing exclude sequence 2230743 - 2232361 PrimerSequence::findValidIndices( ) - removing exclude sequence 2233099 - 2251511 PrimerSequence::findValidIndices( ) - removing exclude sequence 2252052 - 2262380 PrimerSequence::findValidIndices( ) - removing exclude sequence 2262382 - 2274763 PrimerSequence::findValidIndices( ) - removing exclude sequence 2276690 - 2282355 PrimerSequence::findValidIndices( ) - removing exclude sequence 2283262 - 2283981 PrimerSequence::findValidIndices( ) - removing exclude sequence 2284779 - 2286258 PrimerSequence::findValidIndices( ) - removing exclude sequence 2284779 - 2286258 PrimerSequence::findValidIndices( ) - removing exclude sequence 2290626 - 2291976 PrimerSequence::findValidIndices( ) - removing exclude sequence 2290626 - 2291977 PrimerSequence::findValidIndices( ) - removing exclude sequence 2291992 - 2293610 PrimerSequence::findValidIndices( ) - removing exclude sequence 2291993 - 2293607 PrimerSequence::findValidIndices( ) - removing exclude sequence 2291993 - 2293610 PrimerSequence::findValidIndices( ) - removing exclude sequence 2291994 - 2293610 PrimerSequence::findValidIndices( ) - removing exclude sequence 2305751 - 2306545 PrimerSequence::findValidIndices( ) - removing exclude sequence 2307578 - 2312895 PrimerSequence::findValidIndices( ) - removing exclude sequence 2312890 - 2313711 PrimerSequence::findValidIndices( ) - removing exclude sequence 2312891 - 2313713 PrimerSequence::findValidIndices( ) - removing exclude sequence 2312891 - 2313711 PrimerSequence::findValidIndices( ) - removing exclude sequence 2312892 - 2313720 PrimerSequence::findValidIndices( ) - removing exclude sequence 2312892 - 2313712 PrimerSequence::findValidIndices( ) - removing exclude sequence 2312894 - 2313712 PrimerSequence::findValidIndices( ) - removing exclude sequence 2313702 - 2345943 PrimerSequence::findValidIndices( ) - removing exclude sequence 2315233 - 2331780 PrimerSequence::findValidIndices( ) - removing exclude sequence 2332844 - 2345285 PrimerSequence::findValidIndices( ) - removing exclude sequence 2345940 - 2352507 PrimerSequence::findValidIndices( ) - removing exclude sequence 2345976 - 2346846 PrimerSequence::findValidIndices( ) - removing exclude sequence 2346846 - 2348151 PrimerSequence::findValidIndices( ) - removing exclude sequence 2352685 - 2359963 PrimerSequence::findValidIndices( ) - removing exclude sequence 2353319 - 2357138 PrimerSequence::findValidIndices( ) - removing exclude sequence 2353991 - 2354968 PrimerSequence::findValidIndices( ) - removing exclude sequence 2355856 - 2359220 PrimerSequence::findValidIndices( ) - removing exclude sequence 2355856 - 2358070 PrimerSequence::findValidIndices( ) - removing exclude sequence 2355856 - 2362456 PrimerSequence::findValidIndices( ) - removing exclude sequence 2356060 - 2357750 PrimerSequence::findValidIndices( ) - removing exclude sequence 2356162 - 2362456 PrimerSequence::findValidIndices( ) - removing exclude sequence 2356264 - 2362456 PrimerSequence::findValidIndices( ) - removing exclude sequence 2356366 - 2362409 PrimerSequence::findValidIndices( ) - removing exclude sequence 2359918 - 2360706 PrimerSequence::findValidIndices( ) - removing exclude sequence 2359981 - 2362456 PrimerSequence::findValidIndices( ) - removing exclude sequence 2360027 - 2362456 PrimerSequence::findValidIndices( ) - removing exclude sequence 2360868 - 2363437 PrimerSequence::findValidIndices( ) - removing exclude sequence 2360868 - 2363552 PrimerSequence::findValidIndices( ) - removing exclude sequence 2360868 - 2363552 PrimerSequence::findValidIndices( ) - removing exclude sequence 2360868 - 2373964 PrimerSequence::findValidIndices( ) - removing exclude sequence 2361072 - 2363395 PrimerSequence::findValidIndices( ) - removing exclude sequence 2373949 - 2374768 PrimerSequence::findValidIndices( ) - removing exclude sequence 2373949 - 2374770 PrimerSequence::findValidIndices( ) - removing exclude sequence 2373949 - 2374768 PrimerSequence::findValidIndices( ) - removing exclude sequence 2373949 - 2374770 PrimerSequence::findValidIndices( ) - removing exclude sequence 2373950 - 2374769 PrimerSequence::findValidIndices( ) - removing exclude sequence 2382031 - 2382943 PrimerSequence::findValidIndices( ) - removing exclude sequence 2383138 - 2386333 PrimerSequence::findValidIndices( ) - removing exclude sequence 2383278 - 2390842 PrimerSequence::findValidIndices( ) - removing exclude sequence 2383278 - 2387240 PrimerSequence::findValidIndices( ) - removing exclude sequence 2383278 - 2386333 PrimerSequence::findValidIndices( ) - removing exclude sequence 2383349 - 2391148 PrimerSequence::findValidIndices( ) - removing exclude sequence 2384343 - 2391046 PrimerSequence::findValidIndices( ) - removing exclude sequence 2384343 - 2390944 PrimerSequence::findValidIndices( ) - removing exclude sequence 2385054 - 2387220 PrimerSequence::findValidIndices( ) - removing exclude sequence 2387238 - 2391148 PrimerSequence::findValidIndices( ) - removing exclude sequence 2388072 - 2391148 PrimerSequence::findValidIndices( ) - removing exclude sequence 2389047 - 2392131 PrimerSequence::findValidIndices( ) - removing exclude sequence 2389455 - 2400674 PrimerSequence::findValidIndices( ) - removing exclude sequence 2400674 - 2401988 PrimerSequence::findValidIndices( ) - removing exclude sequence 2400675 - 2401988 PrimerSequence::findValidIndices( ) - removing exclude sequence 2400675 - 2401987 PrimerSequence::findValidIndices( ) - removing exclude sequence 2400675 - 2401990 PrimerSequence::findValidIndices( ) - removing exclude sequence 2400675 - 2401992 PrimerSequence::findValidIndices( ) - removing exclude sequence 2400675 - 2401986 PrimerSequence::findValidIndices( ) - removing exclude sequence 2401988 - 2402551 PrimerSequence::findValidIndices( ) - removing exclude sequence 2401988 - 2409947 PrimerSequence::findValidIndices( ) - removing exclude sequence 2406414 - 2409229 PrimerSequence::findValidIndices( ) - removing exclude sequence 2409941 - 2411065 PrimerSequence::findValidIndices( ) - removing exclude sequence 2409944 - 2411064 PrimerSequence::findValidIndices( ) - removing exclude sequence 2411062 - 2440805 PrimerSequence::findValidIndices( ) - removing exclude sequence 2412092 - 2424067 PrimerSequence::findValidIndices( ) - removing exclude sequence 2425337 - 2430595 PrimerSequence::findValidIndices( ) - removing exclude sequence 2431773 - 2466059 PrimerSequence::findValidIndices( ) - removing exclude sequence 2440936 - 2492332 PrimerSequence::findValidIndices( ) - removing exclude sequence 2466066 - 2467579 PrimerSequence::findValidIndices( ) - removing exclude sequence 2467578 - 2502619 PrimerSequence::findValidIndices( ) - removing exclude sequence 2492330 - 2512687 PrimerSequence::findValidIndices( ) - removing exclude sequence 2502620 - 2503679 PrimerSequence::findValidIndices( ) - removing exclude sequence 2714708 - 2715767 PrimerSequence::findValidIndices( ) - removing exclude sequence 2926725 - 2928651 PrimerSequence::findValidIndices( ) - removing exclude sequence 2926793 - 2927849 PrimerSequence::findValidIndices( ) - removing exclude sequence 2926805 - 2927855 PrimerSequence::findValidIndices( ) - removing exclude sequence 2927854 - 2928653 PrimerSequence::findValidIndices( ) - removing exclude sequence 2929189 - 2930540 PrimerSequence::findValidIndices( ) - removing exclude sequence 2929189 - 2930540 PrimerSequence::findValidIndices( ) - removing exclude sequence 2929190 - 2930544 PrimerSequence::findValidIndices( ) - removing exclude sequence 2930541 - 2931823 PrimerSequence::findValidIndices( ) - removing exclude sequence 2931883 - 2933195 PrimerSequence::findValidIndices( ) - removing exclude sequence 2931884 - 2933202 PrimerSequence::findValidIndices( ) - removing exclude sequence 2931884 - 2933195 PrimerSequence::findValidIndices( ) - removing exclude sequence 2931889 - 2933195 PrimerSequence::findValidIndices( ) - removing exclude sequence 2933196 - 2935031 PrimerSequence::findValidIndices( ) - removing exclude sequence 2935025 - 3024207 PrimerSequence::findValidIndices( ) - removing exclude sequence 2935065 - 2960436 PrimerSequence::findValidIndices( ) - removing exclude sequence 2964406 - 2965193 PrimerSequence::findValidIndices( ) - removing exclude sequence 2966313 - 2967151 PrimerSequence::findValidIndices( ) - removing exclude sequence 2967152 - 2983872 PrimerSequence::findValidIndices( ) - removing exclude sequence 2986723 - 3000014 PrimerSequence::findValidIndices( ) - removing exclude sequence 3000018 - 3005694 PrimerSequence::findValidIndices( ) - removing exclude sequence 3007175 - 3008183 PrimerSequence::findValidIndices( ) - removing exclude sequence 3008183 - 3009242 PrimerSequence::findValidIndices( ) - removing exclude sequence 3008183 - 3009244 PrimerSequence::findValidIndices( ) - removing exclude sequence 3008183 - 3009242 PrimerSequence::findValidIndices( ) - removing exclude sequence 3008184 - 3009241 PrimerSequence::findValidIndices( ) - removing exclude sequence 3008184 - 3009242 PrimerSequence::findValidIndices( ) - removing exclude sequence 3009319 - 3010358 PrimerSequence::findValidIndices( ) - removing exclude sequence 3009319 - 3010358 PrimerSequence::findValidIndices( ) - removing exclude sequence 3011078 - 3011897 PrimerSequence::findValidIndices( ) - removing exclude sequence 3011078 - 3011897 PrimerSequence::findValidIndices( ) - removing exclude sequence 3011078 - 3011899 PrimerSequence::findValidIndices( ) - removing exclude sequence 3011078 - 3011897 PrimerSequence::findValidIndices( ) - removing exclude sequence 3011079 - 3011897 PrimerSequence::findValidIndices( ) - removing exclude sequence 3011079 - 3011897 PrimerSequence::findValidIndices( ) - removing exclude sequence 3011079 - 3011897 PrimerSequence::findValidIndices( ) - removing exclude sequence 3011896 - 3024207 PrimerSequence::findValidIndices( ) - removing exclude sequence 3024204 - 3025024 PrimerSequence::findValidIndices( ) - removing exclude sequence 3025022 - 3055386 PrimerSequence::findValidIndices( ) - removing exclude sequence 3025025 - 3047110 PrimerSequence::findValidIndices( ) - removing exclude sequence 3047104 - 3055305 PrimerSequence::findValidIndices( ) - removing exclude sequence 3056232 - 3085840 PrimerSequence::findValidIndices( ) - removing exclude sequence 3056554 - 3066049 PrimerSequence::findValidIndices( ) - removing exclude sequence 3077779 - 3078842 PrimerSequence::findValidIndices( ) - removing exclude sequence 3078301 - 3079882 PrimerSequence::findValidIndices( ) - removing exclude sequence 3078837 - 3079900 PrimerSequence::findValidIndices( ) - removing exclude sequence 3078837 - 3079901 PrimerSequence::findValidIndices( ) - removing exclude sequence 3078837 - 3079905 PrimerSequence::findValidIndices( ) - removing exclude sequence 3078837 - 3079900 PrimerSequence::findValidIndices( ) - removing exclude sequence 3082293 - 3083499 PrimerSequence::findValidIndices( ) - removing exclude sequence 3082295 - 3083902 PrimerSequence::findValidIndices( ) - removing exclude sequence 3084343 - 3085840 PrimerSequence::findValidIndices( ) - removing exclude sequence 3084343 - 3085840 PrimerSequence::findValidIndices( ) - removing exclude sequence 3084494 - 3085840 PrimerSequence::findValidIndices( ) - removing exclude sequence 3087192 - 3090176 PrimerSequence::findValidIndices( ) - removing exclude sequence 3087192 - 3090181 PrimerSequence::findValidIndices( ) - removing exclude sequence 3090164 - 3091038 PrimerSequence::findValidIndices( ) - removing exclude sequence 3090176 - 3091031 PrimerSequence::findValidIndices( ) - removing exclude sequence 3090179 - 3091035 PrimerSequence::findValidIndices( ) - removing exclude sequence 3091028 - 3131805 PrimerSequence::findValidIndices( ) - removing exclude sequence 3091028 - 3096210 PrimerSequence::findValidIndices( ) - removing exclude sequence 3096205 - 3097302 PrimerSequence::findValidIndices( ) - removing exclude sequence 3097302 - 3126995 PrimerSequence::findValidIndices( ) - removing exclude sequence 3126994 - 3128308 PrimerSequence::findValidIndices( ) - removing exclude sequence 3126994 - 3128308 PrimerSequence::findValidIndices( ) - removing exclude sequence 3126996 - 3128308 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131145 - 3131805 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131145 - 3131805 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131145 - 3131805 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131145 - 3132654 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131796 - 3132654 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131797 - 3132654 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131799 - 3132654 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131800 - 3132654 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131801 - 3132657 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131801 - 3132656 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131801 - 3132657 PrimerSequence::findValidIndices( ) - removing exclude sequence 3131802 - 3132657 PrimerSequence::findValidIndices( ) - removing exclude sequence 3132650 - 3133788 PrimerSequence::findValidIndices( ) - removing exclude sequence 3132652 - 3134130 PrimerSequence::findValidIndices( ) - removing exclude sequence 3132654 - 3134130 PrimerSequence::findValidIndices( ) - removing exclude sequence 3132748 - 3133893 PrimerSequence::findValidIndices( ) - removing exclude sequence 3132823 - 3134135 PrimerSequence::findValidIndices( ) - removing exclude sequence 3134134 - 3135291 PrimerSequence::findValidIndices( ) - removing exclude sequence 3135291 - 3160655 PrimerSequence::findValidIndices( ) - removing exclude sequence 3135291 - 3160655 PrimerSequence::findValidIndices( ) - removing exclude sequence 3161714 - 3162426 PrimerSequence::findValidIndices( ) - removing exclude sequence 3161716 - 3188081 PrimerSequence::findValidIndices( ) - removing exclude sequence 3162462 - 3188081 PrimerSequence::findValidIndices( ) - removing exclude sequence 3188074 - 3194072 PrimerSequence::findValidIndices( ) - removing exclude sequence 3188081 - 3192040 PrimerSequence::findValidIndices( ) - removing exclude sequence 3193047 - 3217178 PrimerSequence::findValidIndices( ) - removing exclude sequence 3194067 - 3217508 PrimerSequence::findValidIndices( ) - removing exclude sequence 3217504 - 3218624 PrimerSequence::findValidIndices( ) - removing exclude sequence 3218622 - 3263806 PrimerSequence::findValidIndices( ) - removing exclude sequence 3218642 - 3234456 PrimerSequence::findValidIndices( ) - removing exclude sequence 3234675 - 3264867 PrimerSequence::findValidIndices( ) - removing exclude sequence 3265923 - 3269609 PrimerSequence::findValidIndices( ) - removing exclude sequence 3267973 - 3269609 PrimerSequence::findValidIndices( ) - removing exclude sequence 3270445 - 3281481 PrimerSequence::findValidIndices( ) - removing exclude sequence 3270445 - 3280136 PrimerSequence::findValidIndices( ) - removing exclude sequence 3281473 - 3291641 PrimerSequence::findValidIndices( ) - removing exclude sequence 3287461 - 3288535 PrimerSequence::findValidIndices( ) - removing exclude sequence 3287461 - 3288535 PrimerSequence::findValidIndices( ) - removing exclude sequence 3287463 - 3288538 PrimerSequence::findValidIndices( ) - removing exclude sequence 3287463 - 3288539 PrimerSequence::findValidIndices( ) - removing exclude sequence 3291638 - 3293117 PrimerSequence::findValidIndices( ) - removing exclude sequence 3291642 - 3293114 PrimerSequence::findValidIndices( ) - removing exclude sequence 3293115 - 3333459 PrimerSequence::findValidIndices( ) - removing exclude sequence 3300497 - 3329759 PrimerSequence::findValidIndices( ) - removing exclude sequence 3329959 - 3341923 PrimerSequence::findValidIndices( ) - removing exclude sequence 3333452 - 3342257 PrimerSequence::findValidIndices( ) - removing exclude sequence 3342166 - 3346943 PrimerSequence::findValidIndices( ) - removing exclude sequence 3343359 - 3344790 PrimerSequence::findValidIndices( ) - removing exclude sequence 3343365 - 3344787 PrimerSequence::findValidIndices( ) - removing exclude sequence 3343365 - 3344634 PrimerSequence::findValidIndices( ) - removing exclude sequence 3344785 - 3345605 PrimerSequence::findValidIndices( ) - removing exclude sequence 3344786 - 3345605 PrimerSequence::findValidIndices( ) - removing exclude sequence 3344786 - 3345604 PrimerSequence::findValidIndices( ) - removing exclude sequence 3344818 - 3345604 PrimerSequence::findValidIndices( ) - removing exclude sequence 3345625 - 3346955 PrimerSequence::findValidIndices( ) - removing exclude sequence 3345630 - 3380393 PrimerSequence::findValidIndices( ) - removing exclude sequence 3345631 - 3346942 PrimerSequence::findValidIndices( ) - removing exclude sequence 3345631 - 3346942 PrimerSequence::findValidIndices( ) - removing exclude sequence 3345631 - 3346942 PrimerSequence::findValidIndices( ) - removing exclude sequence 3346943 - 3370379 PrimerSequence::findValidIndices( ) - removing exclude sequence 3373321 - 3374055 PrimerSequence::findValidIndices( ) - removing exclude sequence 3373321 - 3373981 PrimerSequence::findValidIndices( ) - removing exclude sequence 3374054 - 3375200 PrimerSequence::findValidIndices( ) - removing exclude sequence 3374055 - 3375257 PrimerSequence::findValidIndices( ) - removing exclude sequence 3375982 - 3378608 PrimerSequence::findValidIndices( ) - removing exclude sequence 3379287 - 3379829 PrimerSequence::findValidIndices( ) - removing exclude sequence 3379290 - 3381183 PrimerSequence::findValidIndices( ) - removing exclude sequence 3383718 - 3385820 PrimerSequence::findValidIndices( ) - removing exclude sequence 3383718 - 3389361 PrimerSequence::findValidIndices( ) - removing exclude sequence 3383954 - 3389361 PrimerSequence::findValidIndices( ) - removing exclude sequence 3389382 - 3390442 PrimerSequence::findValidIndices( ) - removing exclude sequence 3391786 - 3410912 PrimerSequence::findValidIndices( ) - removing exclude sequence 3391786 - 3403443 PrimerSequence::findValidIndices( ) - removing exclude sequence 3404257 - 3410897 PrimerSequence::findValidIndices( ) - removing exclude sequence 3410905 - 3412269 PrimerSequence::findValidIndices( ) - removing exclude sequence 3410911 - 3412262 PrimerSequence::findValidIndices( ) - removing exclude sequence 3412280 - 3413100 PrimerSequence::findValidIndices( ) - removing exclude sequence 3412281 - 3413101 PrimerSequence::findValidIndices( ) - removing exclude sequence 3413097 - 3419091 PrimerSequence::findValidIndices( ) - removing exclude sequence 3413275 - 3415820 PrimerSequence::findValidIndices( ) - removing exclude sequence 3413510 - 3414822 PrimerSequence::findValidIndices( ) - removing exclude sequence 3413510 - 3414823 PrimerSequence::findValidIndices( ) - removing exclude sequence 3413511 - 3414817 PrimerSequence::findValidIndices( ) - removing exclude sequence 3413511 - 3414822 PrimerSequence::findValidIndices( ) - removing exclude sequence 3413511 - 3414823 PrimerSequence::findValidIndices( ) - removing exclude sequence 3414822 - 3415902 PrimerSequence::findValidIndices( ) - removing exclude sequence 3414822 - 3415905 PrimerSequence::findValidIndices( ) - removing exclude sequence 3414822 - 3415906 PrimerSequence::findValidIndices( ) - removing exclude sequence 3414822 - 3415906 PrimerSequence::findValidIndices( ) - removing exclude sequence 3414822 - 3415905 PrimerSequence::findValidIndices( ) - removing exclude sequence 3415242 - 3415905 PrimerSequence::findValidIndices( ) - removing exclude sequence 3416689 - 3417857 PrimerSequence::findValidIndices( ) - removing exclude sequence 3416689 - 3417857 PrimerSequence::findValidIndices( ) - removing exclude sequence 3416689 - 3417857 PrimerSequence::findValidIndices( ) - removing exclude sequence 3416716 - 3417853 PrimerSequence::findValidIndices( ) - removing exclude sequence 3417901 - 3419091 PrimerSequence::findValidIndices( ) - removing exclude sequence 3417922 - 3419089 PrimerSequence::findValidIndices( ) - removing exclude sequence 3417925 - 3419090 PrimerSequence::findValidIndices( ) - removing exclude sequence 3417925 - 3419089 PrimerSequence::findValidIndices( ) - removing exclude sequence 3417925 - 3419089 PrimerSequence::findValidIndices( ) - removing exclude sequence 3417926 - 3419089 PrimerSequence::findValidIndices( ) - removing exclude sequence 3417926 - 3419089 PrimerSequence::findValidIndices( ) - removing exclude sequence 3419087 - 3419998 PrimerSequence::findValidIndices( ) - removing exclude sequence 3419087 - 3419998 PrimerSequence::findValidIndices( ) - removing exclude sequence 3419087 - 3419763 PrimerSequence::findValidIndices( ) - removing exclude sequence 3419088 - 3419998 PrimerSequence::findValidIndices( ) - removing exclude sequence 3419902 - 3421631 PrimerSequence::findValidIndices( ) - removing exclude sequence 3419988 - 3421058 PrimerSequence::findValidIndices( ) - removing exclude sequence 3419998 - 3421055 PrimerSequence::findValidIndices( ) - removing exclude sequence 3419999 - 3421056 PrimerSequence::findValidIndices( ) - removing exclude sequence 3421057 - 3421626 PrimerSequence::findValidIndices( ) - removing exclude sequence 3421627 - 3497570 PrimerSequence::findValidIndices( ) - removing exclude sequence 3423633 - 3424691 PrimerSequence::findValidIndices( ) - removing exclude sequence 3423634 - 3424693 PrimerSequence::findValidIndices( ) - removing exclude sequence 3423634 - 3424693 PrimerSequence::findValidIndices( ) - removing exclude sequence 3423634 - 3424692 PrimerSequence::findValidIndices( ) - removing exclude sequence 3427331 - 3432389 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434006 - 3435150 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434200 - 3435149 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434289 - 3435145 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434291 - 3435148 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434292 - 3435148 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434292 - 3435148 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434295 - 3435145 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434295 - 3435145 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434323 - 3435145 PrimerSequence::findValidIndices( ) - removing exclude sequence 3434409 - 3435149 PrimerSequence::findValidIndices( ) - removing exclude sequence 3435141 - 3439748 PrimerSequence::findValidIndices( ) - removing exclude sequence 3439749 - 3441054 PrimerSequence::findValidIndices( ) - removing exclude sequence 3439749 - 3441055 PrimerSequence::findValidIndices( ) - removing exclude sequence 3439749 - 3441055 PrimerSequence::findValidIndices( ) - removing exclude sequence 3439749 - 3441055 PrimerSequence::findValidIndices( ) - removing exclude sequence 3439749 - 3441054 PrimerSequence::findValidIndices( ) - removing exclude sequence 3441055 - 3478316 PrimerSequence::findValidIndices( ) - removing exclude sequence 3491043 - 3491902 PrimerSequence::findValidIndices( ) - removing exclude sequence 3491048 - 3491898 PrimerSequence::findValidIndices( ) - removing exclude sequence 3491048 - 3491898 PrimerSequence::findValidIndices( ) - removing exclude sequence 3495153 - 3497343 PrimerSequence::findValidIndices( ) - removing exclude sequence 3497569 - 3525011 PrimerSequence::findValidIndices( ) - removing exclude sequence 3497810 - 3498661 PrimerSequence::findValidIndices( ) - removing exclude sequence 3499154 - 3523291 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525011 - 3526324 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525011 - 3526323 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525012 - 3526324 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525012 - 3526323 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525012 - 3526324 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525012 - 3526329 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525012 - 3526323 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525012 - 3526324 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525012 - 3526323 PrimerSequence::findValidIndices( ) - removing exclude sequence 3525012 - 3526323 PrimerSequence::findValidIndices( ) - removing exclude sequence 3526323 - 3529416 PrimerSequence::findValidIndices( ) - removing exclude sequence 3526323 - 3529416 PrimerSequence::findValidIndices( ) - removing exclude sequence 3532809 - 3535355 PrimerSequence::findValidIndices( ) - removing exclude sequence 3532810 - 3535355 PrimerSequence::findValidIndices( ) - removing exclude sequence 3538998 - 3540188 PrimerSequence::findValidIndices( ) - removing exclude sequence 3539177 - 3539889 PrimerSequence::findValidIndices( ) - removing exclude sequence 3540070 - 3562606 PrimerSequence::findValidIndices( ) - removing exclude sequence 3571805 - 3575906 PrimerSequence::findValidIndices( ) - removing exclude sequence 3571805 - 3619181 PrimerSequence::findValidIndices( ) - removing exclude sequence 3575898 - 3631670 PrimerSequence::findValidIndices( ) - removing exclude sequence 3619237 - 3620056 PrimerSequence::findValidIndices( ) - removing exclude sequence 3622094 - 3644957 PrimerSequence::findValidIndices( ) - removing exclude sequence 3631646 - 3646503 PrimerSequence::findValidIndices( ) - removing exclude sequence 3647557 - 3650922 PrimerSequence::findValidIndices( ) - removing exclude sequence 3650513 - 3654389 PrimerSequence::findValidIndices( ) - removing exclude sequence 3651300 - 3651895 PrimerSequence::findValidIndices( ) - removing exclude sequence 3651895 - 3681013 PrimerSequence::findValidIndices( ) - removing exclude sequence 3654761 - 3655373 PrimerSequence::findValidIndices( ) - removing exclude sequence 3655372 - 3657675 PrimerSequence::findValidIndices( ) - removing exclude sequence 3666570 - 3674372 PrimerSequence::findValidIndices( ) - removing exclude sequence 3674597 - 3688604 PrimerSequence::findValidIndices( ) - removing exclude sequence 3681009 - 3713878 PrimerSequence::findValidIndices( ) - removing exclude sequence 3688600 - 3689602 PrimerSequence::findValidIndices( ) - removing exclude sequence 3689452 - 3695514 PrimerSequence::findValidIndices( ) - removing exclude sequence 3695730 - 3705131 PrimerSequence::findValidIndices( ) - removing exclude sequence 3705913 - 3706968 PrimerSequence::findValidIndices( ) - removing exclude sequence 3705917 - 3706968 PrimerSequence::findValidIndices( ) - removing exclude sequence 3706966 - 3707784 PrimerSequence::findValidIndices( ) - removing exclude sequence 3707191 - 3707786 PrimerSequence::findValidIndices( ) - removing exclude sequence 3710595 - 3711816 PrimerSequence::findValidIndices( ) - removing exclude sequence 3710599 - 3712071 PrimerSequence::findValidIndices( ) - removing exclude sequence 3710599 - 3711679 PrimerSequence::findValidIndices( ) - removing exclude sequence 3710681 - 3711679 PrimerSequence::findValidIndices( ) - removing exclude sequence 3710969 - 3713327 PrimerSequence::findValidIndices( ) - removing exclude sequence 3712072 - 3713422 PrimerSequence::findValidIndices( ) - removing exclude sequence 3712072 - 3713423 PrimerSequence::findValidIndices( ) - removing exclude sequence 3713874 - 3715038 PrimerSequence::findValidIndices( ) - removing exclude sequence 3713879 - 3715039 PrimerSequence::findValidIndices( ) - removing exclude sequence 3715035 - 3721117 PrimerSequence::findValidIndices( ) - removing exclude sequence 3715115 - 3716191 PrimerSequence::findValidIndices( ) - removing exclude sequence 3715127 - 3716180 PrimerSequence::findValidIndices( ) - removing exclude sequence 3715127 - 3716186 PrimerSequence::findValidIndices( ) - removing exclude sequence 3715128 - 3716185 PrimerSequence::findValidIndices( ) - removing exclude sequence 3717109 - 3719541 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719951 - 3722171 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719957 - 3721121 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719957 - 3721120 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719957 - 3721123 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719958 - 3721122 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719958 - 3721123 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719958 - 3721123 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719959 - 3721121 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719959 - 3721121 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719959 - 3721122 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719961 - 3721117 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719962 - 3721117 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719962 - 3721119 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719962 - 3721121 PrimerSequence::findValidIndices( ) - removing exclude sequence 3719989 - 3757772 PrimerSequence::findValidIndices( ) - removing exclude sequence 3721118 - 3722170 PrimerSequence::findValidIndices( ) - removing exclude sequence 3722530 - 3723351 PrimerSequence::findValidIndices( ) - removing exclude sequence 3722532 - 3723350 PrimerSequence::findValidIndices( ) - removing exclude sequence 3723347 - 3724012 PrimerSequence::findValidIndices( ) - removing exclude sequence 3724129 - 3724987 PrimerSequence::findValidIndices( ) - removing exclude sequence 3726953 - 3728155 PrimerSequence::findValidIndices( ) - removing exclude sequence 3726958 - 3728123 PrimerSequence::findValidIndices( ) - removing exclude sequence 3728734 - 3729805 PrimerSequence::findValidIndices( ) - removing exclude sequence 3729804 - 3732581 PrimerSequence::findValidIndices( ) - removing exclude sequence 3732755 - 3737821 PrimerSequence::findValidIndices( ) - removing exclude sequence 3737842 - 3739340 PrimerSequence::findValidIndices( ) - removing exclude sequence 3737842 - 3739339 PrimerSequence::findValidIndices( ) - removing exclude sequence 3737842 - 3739339 PrimerSequence::findValidIndices( ) - removing exclude sequence 3737842 - 3739189 PrimerSequence::findValidIndices( ) - removing exclude sequence 3737842 - 3739341 PrimerSequence::findValidIndices( ) - removing exclude sequence 3740692 - 3742173 PrimerSequence::findValidIndices( ) - removing exclude sequence 3742167 - 3742989 PrimerSequence::findValidIndices( ) - removing exclude sequence 3742170 - 3742989 PrimerSequence::findValidIndices( ) - removing exclude sequence 3742170 - 3742989 PrimerSequence::findValidIndices( ) - removing exclude sequence 3742171 - 3742990 PrimerSequence::findValidIndices( ) - removing exclude sequence 3742171 - 3742990 PrimerSequence::findValidIndices( ) - removing exclude sequence 3742171 - 3742989 PrimerSequence::findValidIndices( ) - removing exclude sequence 3743354 - 3744429 PrimerSequence::findValidIndices( ) - removing exclude sequence 3743354 - 3744430 PrimerSequence::findValidIndices( ) - removing exclude sequence 3743357 - 3744429 PrimerSequence::findValidIndices( ) - removing exclude sequence 3744949 - 3747806 PrimerSequence::findValidIndices( ) - removing exclude sequence 3748261 - 3749329 PrimerSequence::findValidIndices( ) - removing exclude sequence 3748270 - 3749328 PrimerSequence::findValidIndices( ) - removing exclude sequence 3748270 - 3749330 PrimerSequence::findValidIndices( ) - removing exclude sequence 3748270 - 3749328 PrimerSequence::findValidIndices( ) - removing exclude sequence 3748271 - 3749329 PrimerSequence::findValidIndices( ) - removing exclude sequence 3748271 - 3749328 PrimerSequence::findValidIndices( ) - removing exclude sequence 3748271 - 3749329 PrimerSequence::findValidIndices( ) - removing exclude sequence 3748271 - 3749328 PrimerSequence::findValidIndices( ) - removing exclude sequence 3748271 - 3749329 PrimerSequence::findValidIndices( ) - removing exclude sequence 3749329 - 3757442 PrimerSequence::findValidIndices( ) - removing exclude sequence 3758933 - 3760063 PrimerSequence::findValidIndices( ) - removing exclude sequence 3758933 - 3760405 PrimerSequence::findValidIndices( ) - removing exclude sequence 3759514 - 3760409 PrimerSequence::findValidIndices( ) - removing exclude sequence 3760406 - 3797645 PrimerSequence::findValidIndices( ) - removing exclude sequence 3760406 - 3785941 PrimerSequence::findValidIndices( ) - removing exclude sequence 3790043 - 3791128 PrimerSequence::findValidIndices( ) - removing exclude sequence 3790253 - 3791105 PrimerSequence::findValidIndices( ) - removing exclude sequence 3791130 - 3796272 PrimerSequence::findValidIndices( ) - removing exclude sequence 3796352 - 3797645 PrimerSequence::findValidIndices( ) - removing exclude sequence 3796469 - 3819650 PrimerSequence::findValidIndices( ) - removing exclude sequence 3796469 - 3800876 PrimerSequence::findValidIndices( ) - removing exclude sequence 3802844 - 3805270 PrimerSequence::findValidIndices( ) - removing exclude sequence 3806978 - 3809506 PrimerSequence::findValidIndices( ) - removing exclude sequence 3810053 - 3827884 PrimerSequence::findValidIndices( ) - removing exclude sequence 3819645 - 3826991 PrimerSequence::findValidIndices( ) - removing exclude sequence 3829469 - 3840118 PrimerSequence::findValidIndices( ) - removing exclude sequence 3836065 - 3842857 PrimerSequence::findValidIndices( ) - removing exclude sequence 3841304 - 3842877 PrimerSequence::findValidIndices( ) - removing exclude sequence 3844093 - 3850243 PrimerSequence::findValidIndices( ) - removing exclude sequence 3846686 - 3850090 PrimerSequence::findValidIndices( ) - removing exclude sequence 3848020 - 3849805 PrimerSequence::findValidIndices( ) - removing exclude sequence 3848052 - 3849805 PrimerSequence::findValidIndices( ) - removing exclude sequence 3851595 - 3856993 PrimerSequence::findValidIndices( ) - removing exclude sequence 3851595 - 3857799 PrimerSequence::findValidIndices( ) - removing exclude sequence 3855124 - 3875814 PrimerSequence::findValidIndices( ) - removing exclude sequence 3855124 - 3856993 PrimerSequence::findValidIndices( ) - removing exclude sequence 3855127 - 3883386 PrimerSequence::findValidIndices( ) - removing exclude sequence 3869303 - 3873408 PrimerSequence::findValidIndices( ) - removing exclude sequence 3869303 - 3873411 PrimerSequence::findValidIndices( ) - removing exclude sequence 3869303 - 3875822 PrimerSequence::findValidIndices( ) - removing exclude sequence 3877360 - 3878601 PrimerSequence::findValidIndices( ) - removing exclude sequence 3877360 - 3878746 PrimerSequence::findValidIndices( ) - removing exclude sequence 3877360 - 3878746 PrimerSequence::findValidIndices( ) - removing exclude sequence 3877419 - 3878740 PrimerSequence::findValidIndices( ) - removing exclude sequence 3881639 - 3886557 PrimerSequence::findValidIndices( ) - removing exclude sequence 3881639 - 3883774 PrimerSequence::findValidIndices( ) - removing exclude sequence 3881639 - 3883386 PrimerSequence::findValidIndices( ) - removing exclude sequence 3881639 - 3883386 PrimerSequence::findValidIndices( ) - removing exclude sequence 3883544 - 3888115 PrimerSequence::findValidIndices( ) - removing exclude sequence 3886642 - 3891437 PrimerSequence::findValidIndices( ) - removing exclude sequence 3887743 - 3891918 PrimerSequence::findValidIndices( ) - removing exclude sequence 3889084 - 3891918 PrimerSequence::findValidIndices( ) - removing exclude sequence 3889105 - 3898471 PrimerSequence::findValidIndices( ) - removing exclude sequence 3889105 - 3891292 PrimerSequence::findValidIndices( ) - removing exclude sequence 3889105 - 3897413 PrimerSequence::findValidIndices( ) - removing exclude sequence 3897400 - 3898465 PrimerSequence::findValidIndices( ) - removing exclude sequence 3897414 - 3898568 PrimerSequence::findValidIndices( ) - removing exclude sequence 3897414 - 3898471 PrimerSequence::findValidIndices( ) - removing exclude sequence 3897418 - 3899380 PrimerSequence::findValidIndices( ) - removing exclude sequence 3898472 - 3936920 PrimerSequence::findValidIndices( ) - removing exclude sequence 3898472 - 3899385 PrimerSequence::findValidIndices( ) - removing exclude sequence 3898472 - 3899384 PrimerSequence::findValidIndices( ) - removing exclude sequence 3898472 - 3899383 PrimerSequence::findValidIndices( ) - removing exclude sequence 3898472 - 3899383 PrimerSequence::findValidIndices( ) - removing exclude sequence 3898472 - 3899380 PrimerSequence::findValidIndices( ) - removing exclude sequence 3898564 - 3899384 PrimerSequence::findValidIndices( ) - removing exclude sequence 3899378 - 3904431 PrimerSequence::findValidIndices( ) - removing exclude sequence 3904434 - 3919242 PrimerSequence::findValidIndices( ) - removing exclude sequence 3919338 - 3924873 PrimerSequence::findValidIndices( ) - removing exclude sequence 3924867 - 3926348 PrimerSequence::findValidIndices( ) - removing exclude sequence 3924868 - 3925688 PrimerSequence::findValidIndices( ) - removing exclude sequence 3924868 - 3926348 PrimerSequence::findValidIndices( ) - removing exclude sequence 3924868 - 3926348 PrimerSequence::findValidIndices( ) - removing exclude sequence 3924869 - 3926344 PrimerSequence::findValidIndices( ) - removing exclude sequence 3924869 - 3926349 PrimerSequence::findValidIndices( ) - removing exclude sequence 3924869 - 3926353 PrimerSequence::findValidIndices( ) - removing exclude sequence 3924872 - 3926349 PrimerSequence::findValidIndices( ) - removing exclude sequence 3924872 - 3926345 PrimerSequence::findValidIndices( ) - removing exclude sequence 3925684 - 3926345 PrimerSequence::findValidIndices( ) - removing exclude sequence 3925684 - 3926348 PrimerSequence::findValidIndices( ) - removing exclude sequence 3926351 - 3936920 PrimerSequence::findValidIndices( ) - removing exclude sequence 3936856 - 3939644 PrimerSequence::findValidIndices( ) - removing exclude sequence 3938629 - 3939722 PrimerSequence::findValidIndices( ) - removing exclude sequence 3939724 - 3940786 PrimerSequence::findValidIndices( ) - removing exclude sequence 3939725 - 3940784 PrimerSequence::findValidIndices( ) - removing exclude sequence 3939725 - 3940784 PrimerSequence::findValidIndices( ) - removing exclude sequence 3939725 - 3940787 PrimerSequence::findValidIndices( ) - removing exclude sequence 3939726 - 3940784 PrimerSequence::findValidIndices( ) - removing exclude sequence 3939726 - 3940783 PrimerSequence::findValidIndices( ) - removing exclude sequence 3939726 - 3940786 PrimerSequence::findValidIndices( ) - removing exclude sequence 3939726 - 3940783 PrimerSequence::findValidIndices( ) - removing exclude sequence 3939731 - 3940783 PrimerSequence::findValidIndices( ) - removing exclude sequence 3941419 - 3942491 PrimerSequence::findValidIndices( ) - removing exclude sequence 3942491 - 3962177 PrimerSequence::findValidIndices( ) - removing exclude sequence 3950655 - 3951962 PrimerSequence::findValidIndices( ) - removing exclude sequence 3950656 - 3951961 PrimerSequence::findValidIndices( ) - removing exclude sequence 3950656 - 3951962 PrimerSequence::findValidIndices( ) - removing exclude sequence 3954086 - 3963103 PrimerSequence::findValidIndices( ) - removing exclude sequence 3962174 - 3963112 PrimerSequence::findValidIndices( ) - removing exclude sequence 3963110 - 4024830 PrimerSequence::findValidIndices( ) - removing exclude sequence 3963110 - 3964725 PrimerSequence::findValidIndices( ) - removing exclude sequence 3963110 - 3964721 PrimerSequence::findValidIndices( ) - removing exclude sequence 3963111 - 3964718 PrimerSequence::findValidIndices( ) - removing exclude sequence 3963111 - 3964169 PrimerSequence::findValidIndices( ) - removing exclude sequence 3963111 - 3964718 PrimerSequence::findValidIndices( ) - removing exclude sequence 3963112 - 3964725 PrimerSequence::findValidIndices( ) - removing exclude sequence 3963130 - 3964169 PrimerSequence::findValidIndices( ) - removing exclude sequence 3964718 - 3972828 PrimerSequence::findValidIndices( ) - removing exclude sequence 3973358 - 3999058 PrimerSequence::findValidIndices( ) - removing exclude sequence 3981941 - 3983106 PrimerSequence::findValidIndices( ) - removing exclude sequence 3999055 - 4000535 PrimerSequence::findValidIndices( ) - removing exclude sequence 3999056 - 4000534 PrimerSequence::findValidIndices( ) - removing exclude sequence 3999056 - 4000534 PrimerSequence::findValidIndices( ) - removing exclude sequence 3999056 - 4000534 PrimerSequence::findValidIndices( ) - removing exclude sequence 3999056 - 4000539 PrimerSequence::findValidIndices( ) - removing exclude sequence 3999057 - 4000535 PrimerSequence::findValidIndices( ) - removing exclude sequence 3999059 - 4000530 PrimerSequence::findValidIndices( ) - removing exclude sequence 4000531 - 4003047 PrimerSequence::findValidIndices( ) - removing exclude sequence 4003542 - 4003959 PrimerSequence::findValidIndices( ) - removing exclude sequence 4003546 - 4004353 PrimerSequence::findValidIndices( ) - removing exclude sequence 4003548 - 4004353 PrimerSequence::findValidIndices( ) - removing exclude sequence 4003549 - 4004353 PrimerSequence::findValidIndices( ) - removing exclude sequence 4004352 - 4005553 PrimerSequence::findValidIndices( ) - removing exclude sequence 4006785 - 4010186 PrimerSequence::findValidIndices( ) - removing exclude sequence 4010451 - 4011779 PrimerSequence::findValidIndices( ) - removing exclude sequence 4010452 - 4011779 PrimerSequence::findValidIndices( ) - removing exclude sequence 4010452 - 4012800 PrimerSequence::findValidIndices( ) - removing exclude sequence 4010453 - 4011779 PrimerSequence::findValidIndices( ) - removing exclude sequence 4010453 - 4011116 PrimerSequence::findValidIndices( ) - removing exclude sequence 4011543 - 4013309 PrimerSequence::findValidIndices( ) - removing exclude sequence 4014037 - 4023707 PrimerSequence::findValidIndices( ) - removing exclude sequence 4023701 - 4024765 PrimerSequence::findValidIndices( ) - removing exclude sequence 4023706 - 4024763 PrimerSequence::findValidIndices( ) - removing exclude sequence 4023706 - 4024763 PrimerSequence::findValidIndices( ) - removing exclude sequence 4024913 - 4029086 PrimerSequence::findValidIndices( ) - removing exclude sequence 4024929 - 4103637 PrimerSequence::findValidIndices( ) - removing exclude sequence 4029416 - 4030479 PrimerSequence::findValidIndices( ) - removing exclude sequence 4029421 - 4030471 PrimerSequence::findValidIndices( ) - removing exclude sequence 4029425 - 4030479 PrimerSequence::findValidIndices( ) - removing exclude sequence 4037106 - 4047211 PrimerSequence::findValidIndices( ) - removing exclude sequence 4047430 - 4060898 PrimerSequence::findValidIndices( ) - removing exclude sequence 4066196 - 4067507 PrimerSequence::findValidIndices( ) - removing exclude sequence 4066196 - 4067508 PrimerSequence::findValidIndices( ) - removing exclude sequence 4066196 - 4067507 PrimerSequence::findValidIndices( ) - removing exclude sequence 4066201 - 4067507 PrimerSequence::findValidIndices( ) - removing exclude sequence 4067631 - 4099636 PrimerSequence::findValidIndices( ) - removing exclude sequence 4100954 - 4103229 PrimerSequence::findValidIndices( ) - removing exclude sequence 4100954 - 4108420 PrimerSequence::findValidIndices( ) - removing exclude sequence 4100954 - 4104850 PrimerSequence::findValidIndices( ) - removing exclude sequence 4100956 - 4109384 PrimerSequence::findValidIndices( ) - removing exclude sequence 4101950 - 4108673 PrimerSequence::findValidIndices( ) - removing exclude sequence 4101950 - 4108571 PrimerSequence::findValidIndices( ) - removing exclude sequence 4102256 - 4107935 PrimerSequence::findValidIndices( ) - removing exclude sequence 4104848 - 4108979 PrimerSequence::findValidIndices( ) - removing exclude sequence 4105702 - 4106217 PrimerSequence::findValidIndices( ) - removing exclude sequence 4106656 - 4113784 PrimerSequence::findValidIndices( ) - removing exclude sequence 4107370 - 4113784 PrimerSequence::findValidIndices( ) - removing exclude sequence 4107370 - 4110291 PrimerSequence::findValidIndices( ) - removing exclude sequence 4107370 - 4113784 PrimerSequence::findValidIndices( ) - removing exclude sequence 4107473 - 4110334 PrimerSequence::findValidIndices( ) - removing exclude sequence 4110987 - 4114734 PrimerSequence::findValidIndices( ) - removing exclude sequence 4112097 - 4117782 PrimerSequence::findValidIndices( ) - removing exclude sequence 4112502 - 4114671 PrimerSequence::findValidIndices( ) - removing exclude sequence 4113784 - 4114671 PrimerSequence::findValidIndices( ) - removing exclude sequence 4114689 - 4117782 PrimerSequence::findValidIndices( ) - removing exclude sequence 4116497 - 4121774 PrimerSequence::findValidIndices( ) - removing exclude sequence 4116497 - 4122491 PrimerSequence::findValidIndices( ) - removing exclude sequence 4116497 - 4122899 PrimerSequence::findValidIndices( ) - removing exclude sequence 4116498 - 4118667 PrimerSequence::findValidIndices( ) - removing exclude sequence 4119430 - 4123784 PrimerSequence::findValidIndices( ) - removing exclude sequence 4119499 - 4122185 PrimerSequence::findValidIndices( ) - removing exclude sequence 4119541 - 4122287 PrimerSequence::findValidIndices( ) - removing exclude sequence 4119541 - 4121879 PrimerSequence::findValidIndices( ) - removing exclude sequence 4119541 - 4123738 PrimerSequence::findValidIndices( ) - removing exclude sequence 4119541 - 4122491 PrimerSequence::findValidIndices( ) - removing exclude sequence 4119541 - 4122491 PrimerSequence::findValidIndices( ) - removing exclude sequence 4119541 - 4122083 PrimerSequence::findValidIndices( ) - removing exclude sequence 4119541 - 4122389 PrimerSequence::findValidIndices( ) - removing exclude sequence 4120903 - 4123786 PrimerSequence::findValidIndices( ) - removing exclude sequence 4121615 - 4131188 PrimerSequence::findValidIndices( ) - removing exclude sequence 4123787 - 4124764 PrimerSequence::findValidIndices( ) - removing exclude sequence 4124764 - 4125649 PrimerSequence::findValidIndices( ) - removing exclude sequence 4125773 - 4144635 PrimerSequence::findValidIndices( ) - removing exclude sequence 4132409 - 4152410 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144632 - 4145486 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144632 - 4145486 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144632 - 4145489 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144632 - 4145486 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144632 - 4145486 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144633 - 4145486 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144633 - 4145372 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144633 - 4145486 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144633 - 4145486 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144641 - 4145458 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144641 - 4145488 PrimerSequence::findValidIndices( ) - removing exclude sequence 4144728 - 4145488 PrimerSequence::findValidIndices( ) - removing exclude sequence 4148529 - 4149695 PrimerSequence::findValidIndices( ) - removing exclude sequence 4148535 - 4149691 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152405 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152406 - 4153570 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152406 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152406 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152406 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152406 - 4153570 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152406 - 4153539 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152406 - 4153510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152406 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153570 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153570 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153566 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153566 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153561 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153566 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153570 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152407 - 4153571 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152408 - 4153570 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152408 - 4153570 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152408 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152409 - 4153566 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152411 - 4153566 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152411 - 4153566 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152411 - 4153566 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152411 - 4153567 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152411 - 4153570 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152411 - 4153568 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152411 - 4153569 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152411 - 4153566 PrimerSequence::findValidIndices( ) - removing exclude sequence 4152612 - 4153570 PrimerSequence::findValidIndices( ) - removing exclude sequence 4153567 - 4161009 PrimerSequence::findValidIndices( ) - removing exclude sequence 4156355 - 4157175 PrimerSequence::findValidIndices( ) - removing exclude sequence 4156355 - 4157174 PrimerSequence::findValidIndices( ) - removing exclude sequence 4156355 - 4157175 PrimerSequence::findValidIndices( ) - removing exclude sequence 4157515 - 4159262 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161006 - 4162125 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161006 - 4162129 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161007 - 4162126 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161007 - 4162125 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161007 - 4162127 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161008 - 4162125 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161008 - 4162126 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161008 - 4162125 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161008 - 4162126 PrimerSequence::findValidIndices( ) - removing exclude sequence 4161015 - 4162126 PrimerSequence::findValidIndices( ) - removing exclude sequence 4162124 - 4198571 PrimerSequence::findValidIndices( ) - removing exclude sequence 4162125 - 4163229 PrimerSequence::findValidIndices( ) - removing exclude sequence 4163256 - 4167477 PrimerSequence::findValidIndices( ) - removing exclude sequence 4167924 - 4176455 PrimerSequence::findValidIndices( ) - removing exclude sequence 4176455 - 4182974 PrimerSequence::findValidIndices( ) - removing exclude sequence 4182967 - 4183595 PrimerSequence::findValidIndices( ) - removing exclude sequence 4184928 - 4188178 PrimerSequence::findValidIndices( ) - removing exclude sequence 4189110 - 4197104 PrimerSequence::findValidIndices( ) - removing exclude sequence 4198513 - 4215866 PrimerSequence::findValidIndices( ) - removing exclude sequence 4198598 - 4226088 PrimerSequence::findValidIndices( ) - removing exclude sequence 4215872 - 4216706 PrimerSequence::findValidIndices( ) - removing exclude sequence 4216730 - 4234405 PrimerSequence::findValidIndices( ) - removing exclude sequence 4226086 - 4275278 PrimerSequence::findValidIndices( ) - removing exclude sequence 4234698 - 4235803 PrimerSequence::findValidIndices( ) - removing exclude sequence 4235801 - 4237005 PrimerSequence::findValidIndices( ) - removing exclude sequence 4235803 - 4236968 PrimerSequence::findValidIndices( ) - removing exclude sequence 4237207 - 4260488 PrimerSequence::findValidIndices( ) - removing exclude sequence 4260482 - 4273926 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275815 - 4303970 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275816 - 4277139 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275822 - 4277133 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275822 - 4277133 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275822 - 4277133 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275822 - 4277133 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275822 - 4277143 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275822 - 4277138 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275822 - 4277133 PrimerSequence::findValidIndices( ) - removing exclude sequence 4275822 - 4277133 PrimerSequence::findValidIndices( ) - removing exclude sequence 4284054 - 4295198 PrimerSequence::findValidIndices( ) - removing exclude sequence 4295351 - 4301188 PrimerSequence::findValidIndices( ) - removing exclude sequence 4302035 - 4303095 PrimerSequence::findValidIndices( ) - removing exclude sequence 4302036 - 4303094 PrimerSequence::findValidIndices( ) - removing exclude sequence 4302036 - 4303095 PrimerSequence::findValidIndices( ) - removing exclude sequence 4302037 - 4303096 PrimerSequence::findValidIndices( ) - removing exclude sequence 4303095 - 4304830 PrimerSequence::findValidIndices( ) - removing exclude sequence 4303095 - 4307630 PrimerSequence::findValidIndices( ) - removing exclude sequence 4303095 - 4304827 PrimerSequence::findValidIndices( ) - removing exclude sequence 4303731 - 4304587 PrimerSequence::findValidIndices( ) - removing exclude sequence 4310447 - 4311835 PrimerSequence::findValidIndices( ) - removing exclude sequence 4310454 - 4315174 PrimerSequence::findValidIndices( ) - removing exclude sequence 4310454 - 4318753 PrimerSequence::findValidIndices( ) - removing exclude sequence 4310454 - 4311835 PrimerSequence::findValidIndices( ) - removing exclude sequence 4317461 - 4325633 PrimerSequence::findValidIndices( ) - removing exclude sequence 4318748 - 4340036 PrimerSequence::findValidIndices( ) - removing exclude sequence 4325849 - 4333118 PrimerSequence::findValidIndices( ) - removing exclude sequence 4334085 - 4335226 PrimerSequence::findValidIndices( ) - removing exclude sequence 4335289 - 4338115 PrimerSequence::findValidIndices( ) - removing exclude sequence 4338180 - 4339247 PrimerSequence::findValidIndices( ) - removing exclude sequence 4338181 - 4339239 PrimerSequence::findValidIndices( ) - removing exclude sequence 4339239 - 4386841 PrimerSequence::findValidIndices( ) - removing exclude sequence 4340028 - 4359630 PrimerSequence::findValidIndices( ) - removing exclude sequence 4365667 - 4384136 PrimerSequence::findValidIndices( ) - removing exclude sequence 4384137 - 4385155 PrimerSequence::findValidIndices( ) - removing exclude sequence 4384137 - 4385237 PrimerSequence::findValidIndices( ) - removing exclude sequence 4384175 - 4385342 PrimerSequence::findValidIndices( ) - removing exclude sequence 4386838 - 4390770 PrimerSequence::findValidIndices( ) - removing exclude sequence 4390766 - 4392248 PrimerSequence::findValidIndices( ) - removing exclude sequence 4390767 - 4392248 PrimerSequence::findValidIndices( ) - removing exclude sequence 4390771 - 4391662 PrimerSequence::findValidIndices( ) - removing exclude sequence 4391113 - 4392247 PrimerSequence::findValidIndices( ) - removing exclude sequence 4392244 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4392245 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4392246 - 4393425 PrimerSequence::findValidIndices( ) - removing exclude sequence 4393399 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4393403 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4393404 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4393408 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4393408 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4393408 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4393408 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4393573 - 4394510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4394742 - 4416368 PrimerSequence::findValidIndices( ) - removing exclude sequence 4396299 - 4406575 PrimerSequence::findValidIndices( ) - removing exclude sequence 4407660 - 4408152 PrimerSequence::findValidIndices( ) - removing exclude sequence 4408153 - 4409353 PrimerSequence::findValidIndices( ) - removing exclude sequence 4408153 - 4409349 PrimerSequence::findValidIndices( ) - removing exclude sequence 4408153 - 4409349 PrimerSequence::findValidIndices( ) - removing exclude sequence 4408153 - 4409350 PrimerSequence::findValidIndices( ) - removing exclude sequence 4408319 - 4409349 PrimerSequence::findValidIndices( ) - removing exclude sequence 4413046 - 4413630 PrimerSequence::findValidIndices( ) - removing exclude sequence 4414020 - 4415080 PrimerSequence::findValidIndices( ) - removing exclude sequence 4414020 - 4415078 PrimerSequence::findValidIndices( ) - removing exclude sequence 4414021 - 4415078 PrimerSequence::findValidIndices( ) - removing exclude sequence 4414021 - 4415079 PrimerSequence::findValidIndices( ) - removing exclude sequence 4414021 - 4415080 PrimerSequence::findValidIndices( ) - removing exclude sequence 4414021 - 4415078 PrimerSequence::findValidIndices( ) - removing exclude sequence 4414021 - 4415078 PrimerSequence::findValidIndices( ) - removing exclude sequence 4415079 - 4416097 PrimerSequence::findValidIndices( ) - removing exclude sequence 4415079 - 4416098 PrimerSequence::findValidIndices( ) - removing exclude sequence 4416368 - 4420416 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417190 - 4418674 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417195 - 4418674 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417195 - 4418774 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417195 - 4417858 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417195 - 4418505 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417195 - 4418670 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417195 - 4418670 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417195 - 4418505 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417198 - 4418670 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417198 - 4418670 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417198 - 4418674 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417198 - 4418415 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417198 - 4418670 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417198 - 4418674 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417198 - 4418670 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417199 - 4418674 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417201 - 4417858 PrimerSequence::findValidIndices( ) - removing exclude sequence 4417997 - 4418670 PrimerSequence::findValidIndices( ) - removing exclude sequence 4421263 - 4422043 PrimerSequence::findValidIndices( ) - removing exclude sequence 4422131 - 4422950 PrimerSequence::findValidIndices( ) - removing exclude sequence 4422131 - 4422949 PrimerSequence::findValidIndices( ) - removing exclude sequence 4422947 - 4428012 PrimerSequence::findValidIndices( ) - removing exclude sequence 4422947 - 4423998 PrimerSequence::findValidIndices( ) - removing exclude sequence 4422947 - 4423999 PrimerSequence::findValidIndices( ) - removing exclude sequence 4422947 - 4423997 PrimerSequence::findValidIndices( ) - removing exclude sequence 4426746 - 4427993 PrimerSequence::findValidIndices( ) - removing exclude sequence 4426746 - 4427993 PrimerSequence::findValidIndices( ) - removing exclude sequence 4427989 - 4429301 PrimerSequence::findValidIndices( ) - removing exclude sequence 4427990 - 4429301 PrimerSequence::findValidIndices( ) - removing exclude sequence 4427990 - 4430817 PrimerSequence::findValidIndices( ) - removing exclude sequence 4427990 - 4429301 PrimerSequence::findValidIndices( ) - removing exclude sequence 4427990 - 4429301 PrimerSequence::findValidIndices( ) - removing exclude sequence 4427994 - 4429301 PrimerSequence::findValidIndices( ) - removing exclude sequence 4429304 - 4495659 PrimerSequence::findValidIndices( ) - removing exclude sequence 4430153 - 4430812 PrimerSequence::findValidIndices( ) - removing exclude sequence 4430153 - 4430812 PrimerSequence::findValidIndices( ) - removing exclude sequence 4436665 - 4437989 PrimerSequence::findValidIndices( ) - removing exclude sequence 4436665 - 4437989 PrimerSequence::findValidIndices( ) - removing exclude sequence 4436669 - 4437990 PrimerSequence::findValidIndices( ) - removing exclude sequence 4439068 - 4440126 PrimerSequence::findValidIndices( ) - removing exclude sequence 4439069 - 4440126 PrimerSequence::findValidIndices( ) - removing exclude sequence 4447597 - 4454328 PrimerSequence::findValidIndices( ) - removing exclude sequence 4454580 - 4467378 PrimerSequence::findValidIndices( ) - removing exclude sequence 4467379 - 4468437 PrimerSequence::findValidIndices( ) - removing exclude sequence 4468444 - 4477666 PrimerSequence::findValidIndices( ) - removing exclude sequence 4479766 - 4480592 PrimerSequence::findValidIndices( ) - removing exclude sequence 4481188 - 4481761 PrimerSequence::findValidIndices( ) - removing exclude sequence 4482212 - 4490560 PrimerSequence::findValidIndices( ) - removing exclude sequence 4494993 - 4495659 PrimerSequence::findValidIndices( ) - removing exclude sequence 4494995 - 4495659 PrimerSequence::findValidIndices( ) - removing exclude sequence 4494999 - 4495659 PrimerSequence::findValidIndices( ) - removing exclude sequence 4494999 - 4495659 PrimerSequence::findValidIndices( ) - removing exclude sequence 4494999 - 4495659 PrimerSequence::findValidIndices( ) - removing exclude sequence 4495650 - 4496519 PrimerSequence::findValidIndices( ) - removing exclude sequence 4495655 - 4496510 PrimerSequence::findValidIndices( ) - removing exclude sequence 4495655 - 4496511 PrimerSequence::findValidIndices( ) - removing exclude sequence 4495655 - 4496514 PrimerSequence::findValidIndices( ) - removing exclude sequence 4495658 - 4496512 PrimerSequence::findValidIndices( ) - removing exclude sequence 4495658 - 4496512 PrimerSequence::findValidIndices( ) - removing exclude sequence 4495663 - 4496519 PrimerSequence::findValidIndices( ) - removing exclude sequence 4497148 - 4498461 PrimerSequence::findValidIndices( ) - removing exclude sequence 4497149 - 4498455 PrimerSequence::findValidIndices( ) - removing exclude sequence 4497149 - 4498460 PrimerSequence::findValidIndices( ) - removing exclude sequence 4497149 - 4498460 PrimerSequence::findValidIndices( ) - removing exclude sequence 4498464 - 4504619 PrimerSequence::findValidIndices( ) - removing exclude sequence 4499616 - 4504619 PrimerSequence::findValidIndices( ) - removing exclude sequence 4504614 - 4505468 PrimerSequence::findValidIndices( ) - removing exclude sequence 4504614 - 4505472 PrimerSequence::findValidIndices( ) - removing exclude sequence 4504615 - 4505472 PrimerSequence::findValidIndices( ) - removing exclude sequence 4505467 - 4518924 PrimerSequence::findValidIndices( ) - removing exclude sequence 4505467 - 4518924 PrimerSequence::findValidIndices( ) - removing exclude sequence 4520331 - 4541220 PrimerSequence::findValidIndices( ) - removing exclude sequence 4520331 - 4532128 PrimerSequence::findValidIndices( ) - removing exclude sequence 4545789 - 4591667 PrimerSequence::findValidIndices( ) - removing exclude sequence 4557871 - 4571017 PrimerSequence::findValidIndices( ) - removing exclude sequence 4570945 - 4577725 PrimerSequence::findValidIndices( ) - removing exclude sequence 4579014 - 4587102 PrimerSequence::findValidIndices( ) - removing exclude sequence 4591646 - 4593125 PrimerSequence::findValidIndices( ) - removing exclude sequence 4591647 - 4593126 PrimerSequence::findValidIndices( ) - removing exclude sequence 4594287 - 4595759 PrimerSequence::findValidIndices( ) - removing exclude sequence 4594452 - 4602284 PrimerSequence::findValidIndices( ) - removing exclude sequence 4599511 - 4602141 PrimerSequence::findValidIndices( ) - removing exclude sequence 4602144 - 4603455 PrimerSequence::findValidIndices( ) - removing exclude sequence 4602144 - 4603455 PrimerSequence::findValidIndices( ) - removing exclude sequence 4603456 - 4668320 PrimerSequence::findValidIndices( ) - removing exclude sequence 4605434 - 4630071 PrimerSequence::findValidIndices( ) - removing exclude sequence 4632930 - 4634235 PrimerSequence::findValidIndices( ) - removing exclude sequence 4632930 - 4634235 PrimerSequence::findValidIndices( ) - removing exclude sequence 4632930 - 4634235 PrimerSequence::findValidIndices( ) - removing exclude sequence 4632930 - 4634236 PrimerSequence::findValidIndices( ) - removing exclude sequence 4632930 - 4634235 PrimerSequence::findValidIndices( ) - removing exclude sequence 4634376 - 4635040 PrimerSequence::findValidIndices( ) - removing exclude sequence 4642338 - 4666114 PrimerSequence::findValidIndices( ) - removing exclude sequence 4666984 - 4668373 PrimerSequence::findValidIndices( ) - removing exclude sequence 4668369 - 4669192 PrimerSequence::findValidIndices( ) - removing exclude sequence 4668962 - 4705013 PrimerSequence::findValidIndices( ) - removing exclude sequence 4669186 - 4674337 PrimerSequence::findValidIndices( ) - removing exclude sequence 4674333 - 4675630 PrimerSequence::findValidIndices( ) - removing exclude sequence 4674337 - 4675631 PrimerSequence::findValidIndices( ) - removing exclude sequence 4674337 - 4675630 PrimerSequence::findValidIndices( ) - removing exclude sequence 4674337 - 4675630 PrimerSequence::findValidIndices( ) - removing exclude sequence 4674338 - 4675635 PrimerSequence::findValidIndices( ) - removing exclude sequence 4674338 - 4675630 PrimerSequence::findValidIndices( ) - removing exclude sequence 4674338 - 4675631 PrimerSequence::findValidIndices( ) - removing exclude sequence 4674338 - 4675631 PrimerSequence::findValidIndices( ) - removing exclude sequence 4674338 - 4675631 PrimerSequence::findValidIndices( ) - removing exclude sequence 4675871 - 4676467 PrimerSequence::findValidIndices( ) - removing exclude sequence 4675872 - 4677756 PrimerSequence::findValidIndices( ) - removing exclude sequence 4676468 - 4677526 PrimerSequence::findValidIndices( ) - removing exclude sequence 4677754 - 4698399 PrimerSequence::findValidIndices( ) - removing exclude sequence 4698705 - 4704977 PrimerSequence::findValidIndices( ) - removing exclude sequence 4705057 - 4739346 PrimerSequence::findValidIndices( ) - removing exclude sequence 4705109 - 4707572 PrimerSequence::findValidIndices( ) - removing exclude sequence 4707572 - 4738405 PrimerSequence::findValidIndices( ) - removing exclude sequence 4739440 - 4741260 PrimerSequence::findValidIndices( ) - removing exclude sequence 4739705 - 4752583 PrimerSequence::findValidIndices( ) - removing exclude sequence 4741362 - 4755227 PrimerSequence::findValidIndices( ) - removing exclude sequence 4755219 - 4769989 PrimerSequence::findValidIndices( ) - removing exclude sequence 4759651 - 4761131 PrimerSequence::findValidIndices( ) - removing exclude sequence 4759651 - 4761131 PrimerSequence::findValidIndices( ) - removing exclude sequence 4759655 - 4761127 PrimerSequence::findValidIndices( ) - removing exclude sequence 4759655 - 4761132 PrimerSequence::findValidIndices( ) - removing exclude sequence 4759655 - 4761131 PrimerSequence::findValidIndices( ) - removing exclude sequence 4759820 - 4761127 PrimerSequence::findValidIndices( ) - removing exclude sequence 4759910 - 4761131 PrimerSequence::findValidIndices( ) - removing exclude sequence 4761142 - 4762349 PrimerSequence::findValidIndices( ) - removing exclude sequence 4761143 - 4762349 PrimerSequence::findValidIndices( ) - removing exclude sequence 4761151 - 4762348 PrimerSequence::findValidIndices( ) - removing exclude sequence 4762916 - 4770236 PrimerSequence::findValidIndices( ) - removing exclude sequence 4771306 - 4788772 PrimerSequence::findValidIndices( ) - removing exclude sequence 4771309 - 4772125 PrimerSequence::findValidIndices( ) - removing exclude sequence 4771309 - 4772784 PrimerSequence::findValidIndices( ) - removing exclude sequence 4771309 - 4772790 PrimerSequence::findValidIndices( ) - removing exclude sequence 4771399 - 4772544 PrimerSequence::findValidIndices( ) - removing exclude sequence 4773078 - 4774136 PrimerSequence::findValidIndices( ) - removing exclude sequence 4773078 - 4774136 PrimerSequence::findValidIndices( ) - removing exclude sequence 4774137 - 4787449 PrimerSequence::findValidIndices( ) - removing exclude sequence 4787712 - 4788771 PrimerSequence::findValidIndices( ) - removing exclude sequence 4787714 - 4788773 PrimerSequence::findValidIndices( ) - removing exclude sequence 4789407 - 4790242 PrimerSequence::findValidIndices( ) - removing exclude sequence 4789409 - 4790465 PrimerSequence::findValidIndices( ) - removing exclude sequence 4789409 - 4790466 PrimerSequence::findValidIndices( ) - removing exclude sequence 4789409 - 4790465 PrimerSequence::findValidIndices( ) - removing exclude sequence 4789410 - 4790466 PrimerSequence::findValidIndices( ) - removing exclude sequence 4816573 - 4818839 PrimerSequence::findValidIndices( ) - removing exclude sequence 4816573 - 4822945 PrimerSequence::findValidIndices( ) - removing exclude sequence 4825056 - 4826182 PrimerSequence::findValidIndices( ) - removing exclude sequence 4825060 - 4826552 PrimerSequence::findValidIndices( ) - removing exclude sequence 4825061 - 4826552 PrimerSequence::findValidIndices( ) - removing exclude sequence 4825061 - 4826552 PrimerSequence::findValidIndices( ) - removing exclude sequence 4825061 - 4826182 PrimerSequence::findValidIndices( ) - removing exclude sequence 4825061 - 4826552 PrimerSequence::findValidIndices( ) - removing exclude sequence 4825229 - 4826562 PrimerSequence::findValidIndices( ) - removing exclude sequence 4827537 - 4828598 PrimerSequence::findValidIndices( ) - removing exclude sequence 4827538 - 4828597 PrimerSequence::findValidIndices( ) - removing exclude sequence 4827540 - 4833105 PrimerSequence::findValidIndices( ) - removing exclude sequence 4827540 - 4828598 PrimerSequence::findValidIndices( ) - removing exclude sequence 4831459 - 4844637 PrimerSequence::findValidIndices( ) - removing exclude sequence 4833400 - 4899664 PrimerSequence::findValidIndices( ) - removing exclude sequence 4857689 - 4870712 PrimerSequence::findValidIndices( ) - removing exclude sequence 4870697 - 4887340 PrimerSequence::findValidIndices( ) - removing exclude sequence 4887898 - 4897526 PrimerSequence::findValidIndices( ) - removing exclude sequence 4897524 - 4898727 PrimerSequence::findValidIndices( ) - removing exclude sequence 4897525 - 4898728 PrimerSequence::findValidIndices( ) - removing exclude sequence 4897525 - 4898726 PrimerSequence::findValidIndices( ) - removing exclude sequence 4897525 - 4898719 PrimerSequence::findValidIndices( ) - removing exclude sequence 4898727 - 4899665 PrimerSequence::findValidIndices( ) - removing exclude sequence 4901102 - 4914122 PrimerSequence::findValidIndices( ) - removing exclude sequence 4901121 - 4994342 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914122 - 4915601 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914122 - 4915601 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914122 - 4915601 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914122 - 4915342 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914123 - 4915597 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914123 - 4915601 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914123 - 4915597 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914126 - 4915601 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914362 - 4915507 PrimerSequence::findValidIndices( ) - removing exclude sequence 4914467 - 4915597 PrimerSequence::findValidIndices( ) - removing exclude sequence 4915938 - 4928389 PrimerSequence::findValidIndices( ) - removing exclude sequence 4930947 - 4936020 PrimerSequence::findValidIndices( ) - removing exclude sequence 4936336 - 4947622 PrimerSequence::findValidIndices( ) - removing exclude sequence 4947770 - 4955037 PrimerSequence::findValidIndices( ) - removing exclude sequence 4957090 - 4972684 PrimerSequence::findValidIndices( ) - removing exclude sequence 4974755 - 4989375 PrimerSequence::findValidIndices( ) - removing exclude sequence 4989890 - 4995411 PrimerSequence::findValidIndices( ) - removing exclude sequence 4994339 - 5018250 PrimerSequence::findValidIndices( ) - removing exclude sequence 4997445 - 5013617 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013723 - 5015045 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013728 - 5014327 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013730 - 5015045 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013732 - 5015045 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013733 - 5015045 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013733 - 5015040 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013733 - 5015045 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013733 - 5015045 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013734 - 5015045 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013734 - 5015045 PrimerSequence::findValidIndices( ) - removing exclude sequence 5013734 - 5015045 PrimerSequence::findValidIndices( ) - removing exclude sequence 5015046 - 5016287 PrimerSequence::findValidIndices( ) - removing exclude sequence 5017100 - 5018830 PrimerSequence::findValidIndices( ) - removing exclude sequence 5017196 - 5018255 PrimerSequence::findValidIndices( ) - removing exclude sequence 5017196 - 5018255 PrimerSequence::findValidIndices( ) - removing exclude sequence 5017197 - 5018254 PrimerSequence::findValidIndices( ) - removing exclude sequence 5017198 - 5018253 PrimerSequence::findValidIndices( ) - removing exclude sequence 5018216 - 5043959 PrimerSequence::findValidIndices( ) - removing exclude sequence 5018827 - 5019960 PrimerSequence::findValidIndices( ) - removing exclude sequence 5018827 - 5019820 PrimerSequence::findValidIndices( ) - removing exclude sequence 5018827 - 5019997 PrimerSequence::findValidIndices( ) - removing exclude sequence 5018852 - 5019990 PrimerSequence::findValidIndices( ) - removing exclude sequence 5020638 - 5021461 PrimerSequence::findValidIndices( ) - removing exclude sequence 5020642 - 5021462 PrimerSequence::findValidIndices( ) - removing exclude sequence 5020867 - 5021463 PrimerSequence::findValidIndices( ) - removing exclude sequence 5023328 - 5024369 PrimerSequence::findValidIndices( ) - removing exclude sequence 5024822 - 5029456 PrimerSequence::findValidIndices( ) - removing exclude sequence 5038143 - 5039199 PrimerSequence::findValidIndices( ) - removing exclude sequence 5039289 - 5040895 PrimerSequence::findValidIndices( ) - removing exclude sequence 5039692 - 5040895 PrimerSequence::findValidIndices( ) - removing exclude sequence 5040339 - 5040895 PrimerSequence::findValidIndices( ) - removing exclude sequence 5043955 - 5044777 PrimerSequence::findValidIndices( ) - removing exclude sequence 5043957 - 5044776 PrimerSequence::findValidIndices( ) - removing exclude sequence 5044773 - 5057422 PrimerSequence::findValidIndices( ) - removing exclude sequence 5044783 - 5058031 PrimerSequence::findValidIndices( ) - removing exclude sequence 5057432 - 5062750 PrimerSequence::findValidIndices( ) - removing exclude sequence 5062870 - 5063726 PrimerSequence::findValidIndices( ) - removing exclude sequence 5063768 - 5065243 PrimerSequence::findValidIndices( ) - removing exclude sequence 5067031 - 5078940 PrimerSequence::findValidIndices( ) - removing exclude sequence 5067053 - 5068107 PrimerSequence::findValidIndices( ) - removing exclude sequence 5068773 - 5069831 PrimerSequence::findValidIndices( ) - removing exclude sequence 5068774 - 5069831 PrimerSequence::findValidIndices( ) - removing exclude sequence 5068775 - 5069830 PrimerSequence::findValidIndices( ) - removing exclude sequence 5069832 - 5075264 PrimerSequence::findValidIndices( ) - removing exclude sequence 5075478 - 5076991 PrimerSequence::findValidIndices( ) - removing exclude sequence 5078938 - 5080004 PrimerSequence::findValidIndices( ) - removing exclude sequence 5078939 - 5079999 PrimerSequence::findValidIndices( ) - removing exclude sequence 5078941 - 5080004 PrimerSequence::findValidIndices( ) - removing exclude sequence 5078941 - 5079996 PrimerSequence::findValidIndices( ) - removing exclude sequence 5078941 - 5079996 PrimerSequence::findValidIndices( ) - removing exclude sequence 5078941 - 5079996 PrimerSequence::findValidIndices( ) - removing exclude sequence 5078941 - 5079996 PrimerSequence::findValidIndices( ) - removing exclude sequence 5079996 - 5106834 PrimerSequence::findValidIndices( ) - removing exclude sequence 5081229 - 5081867 PrimerSequence::findValidIndices( ) - removing exclude sequence 5083088 - 5098104 PrimerSequence::findValidIndices( ) - removing exclude sequence 5098161 - 5099220 PrimerSequence::findValidIndices( ) - removing exclude sequence 5099344 - 5101056 PrimerSequence::findValidIndices( ) - removing exclude sequence 5105493 - 5106259 PrimerSequence::findValidIndices( ) - removing exclude sequence 5105494 - 5106259 PrimerSequence::findValidIndices( ) - removing exclude sequence 5105495 - 5106259 PrimerSequence::findValidIndices( ) - removing exclude sequence 5105498 - 5106259 PrimerSequence::findValidIndices( ) - removing exclude sequence 5107116 - 5116161 PrimerSequence::findValidIndices( ) - removing exclude sequence 5114951 - 5116160 PrimerSequence::findValidIndices( ) - removing exclude sequence 5114958 - 5115987 PrimerSequence::findValidIndices( ) - removing exclude sequence 5114958 - 5116160 PrimerSequence::findValidIndices( ) - removing exclude sequence 5114959 - 5116160 PrimerSequence::findValidIndices( ) - removing exclude sequence 5114959 - 5116121 PrimerSequence::findValidIndices( ) - removing exclude sequence 5114959 - 5152829 PrimerSequence::findValidIndices( ) - removing exclude sequence 5114959 - 5116160 PrimerSequence::findValidIndices( ) - removing exclude sequence 5114965 - 5116162 PrimerSequence::findValidIndices( ) - removing exclude sequence 5115016 - 5116154 PrimerSequence::findValidIndices( ) - removing exclude sequence 5116614 - 5122960 PrimerSequence::findValidIndices( ) - removing exclude sequence 5122840 - 5125556 PrimerSequence::findValidIndices( ) - removing exclude sequence 5125728 - 5126750 PrimerSequence::findValidIndices( ) - removing exclude sequence 5134988 - 5150682 PrimerSequence::findValidIndices( ) - removing exclude sequence 5150683 - 5163021 PrimerSequence::findValidIndices( ) - removing exclude sequence 5152823 - 5172240 PrimerSequence::findValidIndices( ) - removing exclude sequence 5164638 - 5168947 PrimerSequence::findValidIndices( ) - removing exclude sequence 5170720 - 5171437 PrimerSequence::findValidIndices( ) - removing exclude sequence 5172239 - 5173716 PrimerSequence::findValidIndices( ) - removing exclude sequence 5173902 - 5202656 PrimerSequence::findValidIndices( ) - removing exclude sequence 5175586 - 5179685 PrimerSequence::findValidIndices( ) - removing exclude sequence 5179951 - 5186166 PrimerSequence::findValidIndices( ) - removing exclude sequence 5186164 - 5187644 PrimerSequence::findValidIndices( ) - removing exclude sequence 5186168 - 5187640 PrimerSequence::findValidIndices( ) - removing exclude sequence 5186824 - 5187649 PrimerSequence::findValidIndices( ) - removing exclude sequence 5188964 - 5196690 PrimerSequence::findValidIndices( ) - removing exclude sequence 5199016 - 5202656 PrimerSequence::findValidIndices( ) - removing exclude sequence 5202654 - 5203774 PrimerSequence::findValidIndices( ) - removing exclude sequence 5203774 - 5208101 PrimerSequence::findValidIndices( ) - removing exclude sequence 5203774 - 5206600 PrimerSequence::findValidIndices( ) - removing exclude sequence 5206983 - 5208101 PrimerSequence::findValidIndices( ) - removing exclude sequence 5206985 - 5208101 PrimerSequence::findValidIndices( ) - removing exclude sequence 5208301 - 5209362 PrimerSequence::findValidIndices( ) - removing exclude sequence 5209423 - 5210053 PrimerSequence::findValidIndices( ) - removing exclude sequence 5209793 - 5212821 PrimerSequence::findValidIndices( ) - removing exclude sequence 5210771 - 5213559 PrimerSequence::findValidIndices( ) - removing exclude sequence 5212822 - 5214344 PrimerSequence::findValidIndices( ) - removing exclude sequence 5212825 - 5214344 PrimerSequence::findValidIndices( ) - removing exclude sequence 5217226 - 5240075 PrimerSequence::findValidIndices( ) - removing exclude sequence 5218688 - 5222451 PrimerSequence::findValidIndices( ) - removing exclude sequence 5222647 - 5226290 PrimerSequence::findValidIndices( ) - removing exclude sequence 5227136 - 5240075 PrimerSequence::findValidIndices( ) - 591528 unique indices PrimerSequence::findValidIndexSequences( ) - getting sequences from unique indices PrimerSequence::findValidIndexSequences( ) - 84976 sequences found IncludeFileManager::processIncludeFile( ) - processing data/Xoc_BLS256.fasta PrimerManager::writeFastaFile( ) - Writing 326 sequences to fasta file PrimerManager::writeFastaFile( ) - writing fasta file complete IncludeFileManager::findUniqueSequence( ) - running nucmer for reference file: data/Xoc_BLS256.fasta ProgramBase::Execute( ) - Running the nucmer program. ProgramBase::Execute( ) - /usr/local/bioinfo/MUMmer/3.23/nucmer -p nucmer_alignments -o --minmatch 300 --maxgap 1 data/Xoc_BLS256.fasta tmpz0OJOq/tempSequences.fasta NucmerParser::parseCoordMatchFile( ) - Parse nucmer_alignments.coords, finding 28 matches fastaparser::parseFastaFileAsPrimerSequence( ) - parsing fasta file data/Xoc_BLS256.fasta fastaparser::parseFastaFileAsPrimerSequence( ) - read 1 sequences PrimerSequence::getMatchedSubSequences( ) - finding valid sub sequences for gi|868566092|ref|NC_017267.2| PrimerManager::getCommonPrimers - finding primers that are common to all include files PrimerManager::findPrimer(s ) - writing sequences to a fasta file PrimerManager::writeFastaFile( ) - Writing 149 sequences to fasta file PrimerManager::writeFastaFile( ) - writing fasta file complete PrimerManager::findPrimers( ) - executing eprimer3 program ProgramBase::Execute( ) - Running the EPrimer3 program. ProgramBase::Execute( ) - /usr/local/bioinfo/EMBOSS/6.6.0/bin/eprimer3 tmpz0OJOq/sequenceForEprimer.fasta tmpz0OJOq/referenceprimers.ep3 -numreturn 2 -prange 200-250 -osize 20 -minsize 18 -maxsize 27 PrimerManager::findPrimer( ) - eprimer3 file tmpz0OJOq/referenceprimers.ep3 created. Parsing for primers. eprimerparser::parsePrimerSequences( ) - parsing for primer sequences eprimerparser::parsePrimerSequences( ) - finished parsing. found 272 primers PrimerManager::findPrimers( ) - parsing for sequences complete fastaparser::parseFastaFile( ) - parsing fasta file tmpz0OJOq/combined_exlude.ffn PrimerManager::crossValidatePrimers - finding primers that are not in the supplied exclude file ProgramBase::Execute( ) - Running the PrimerSearch program. ProgramBase::Execute( ) - /usr/local/bioinfo/EMBOSS/6.6.0/bin/primersearch -seqall tmpz0OJOq/combined_exlude.ffn -infile tmpz0OJOq/tmpinputprimers.ps -mismatchpercent 0 -outfile tmpz0OJOq/tmpoutputprimers.ps PrimerManager::crossValidatePrimers - 79 unique primers identified out of 272 fastaparser::parseFastaFile( ) - parsing fasta file data/PX099A.fa PrimerManager::crossValidatePrimers - finding primers that are in the supplied include file ProgramBase::Execute( ) - Running the PrimerSearch program. ProgramBase::Execute( ) - /usr/local/bioinfo/EMBOSS/6.6.0/bin/primersearch -seqall data/PX099A.fa -infile tmpz0OJOq/tmpinputprimers2.ps1 -mismatchpercent 0 -outfile tmpz0OJOq/tmpoutputprimers2.ps1 PrimerManager::crossValidatePrimers - 79 unique primers identified out of 79 fastaparser::parseFastaFile( ) - parsing fasta file data/Xoc_BLS256.fasta PrimerManager::crossValidatePrimers - finding primers that are in the supplied include file ProgramBase::Execute( ) - Running the PrimerSearch program. ProgramBase::Execute( ) - /usr/local/bioinfo/EMBOSS/6.6.0/bin/primersearch -seqall data/Xoc_BLS256.fasta -infile tmpz0OJOq/tmpinputprimers2.ps2 -mismatchpercent 0 -outfile tmpz0OJOq/tmpoutputprimers2.ps2 PrimerManager::crossValidatePrimers - 0 unique primers identified out of 79