Mercurial > repos > devteam > add_value
annotate fixedValueColumn.xml @ 3:745871c0b055 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:03:16 -0500 |
| parents | cd36813b813f |
| children | 023f0a3760b3 |
| rev | line source |
|---|---|
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cd36813b813f
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
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1 <tool id="addValue" name="Add column" version="1.0.0"> |
| 0 | 2 <description>to an existing dataset</description> |
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1
4676e145a44e
Updated command line format per dev team standards.
InitHello <inithello@gmail.com>
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changeset
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3 <command interpreter="perl">fixedValueColumn.pl "${input}" "${out_file1}" "${exp}" "${iterate}"</command> |
| 0 | 4 <inputs> |
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3
745871c0b055
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/add_value commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
2
diff
changeset
|
5 <param name="exp" type="text" value="1" label="Add this value"/> |
| 0 | 6 <param format="tabular" name="input" type="data" label="to Dataset" help="Dataset missing? See TIP below" /> |
| 7 <param name="iterate" type="select" label="Iterate?"> | |
| 8 <option value="no">NO</option> | |
| 9 <option value="yes">YES</option> | |
| 10 </param> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data format="input" name="out_file1" metadata_source="input"/> | |
| 14 </outputs> | |
| 15 <tests> | |
| 16 <test> | |
| 17 <param name="exp" value="1"/> | |
| 18 <param name="input" value="1.bed"/> | |
| 19 <param name="iterate" value="no"/> | |
| 20 <output name="out_file1" file="eq-addvalue.dat"/> | |
| 21 </test> | |
| 22 </tests> | |
| 23 <help> | |
| 24 | |
| 25 .. class:: infomark | |
| 26 | |
| 27 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* | |
| 28 | |
| 29 ----- | |
| 30 | |
| 31 **What it does** | |
| 32 | |
| 33 You can enter any value and it will be added as a new column to your dataset | |
| 34 | |
| 35 ----- | |
| 36 | |
| 37 **Example** | |
| 38 | |
| 39 If you original data looks like this:: | |
| 40 | |
| 41 chr1 10 100 geneA | |
| 42 chr2 200 300 geneB | |
| 43 chr2 400 500 geneC | |
| 44 | |
| 45 Typing **+** in the text box will generate:: | |
| 46 | |
| 47 chr1 10 100 geneA + | |
| 48 chr2 200 300 geneB + | |
| 49 chr2 400 500 geneC + | |
| 50 | |
| 51 | |
| 52 You can also add line numbers by selecting **Iterate: YES**. In this case if you enter **1** in the text box you will get:: | |
| 53 | |
| 54 chr1 10 100 geneA 1 | |
| 55 chr2 200 300 geneB 2 | |
| 56 chr2 400 500 geneC 3 | |
| 57 | |
| 58 | |
| 59 | |
| 60 </help> | |
| 61 </tool> |