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comparison bam_to_sam.xml @ 7:10184eaa85fc draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/bam_to_sam commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:10:41 +0000
parents f57df915aa10
children a53efedba9e7
comparison
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6:88eedb4abea0 7:10184eaa85fc
1 <tool id="bam_to_sam" name="BAM-to-SAM" version="2.0.1"> 1 <tool id="bam_to_sam" name="BAM-to-SAM" version="2.0.2" profile="@PROFILE@">
2 <description>convert BAM to SAM</description> 2 <description>convert BAM to SAM</description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
26 </outputs> 26 </outputs>
27 <tests> 27 <tests>
28 <test> 28 <test>
29 <param ftype="bam" name="input1" value="bam_to_sam_in1.bam" /> 29 <param ftype="bam" name="input1" value="bam_to_sam_in1.bam" />
30 <param name="header" value="-h" /> 30 <param name="header" value="-h" />
31 <output file="bam_to_sam_out1.sam" name="output1" /> 31 <output file="bam_to_sam_out1.sam" name="output1" lines_diff="2" />
32 </test> 32 </test>
33 <test> 33 <test>
34 <param ftype="bam" name="input1" value="bam_to_sam_in1.bam" /> 34 <param ftype="bam" name="input1" value="bam_to_sam_in1.bam" />
35 <param name="header" value="-H" /> 35 <param name="header" value="-H" />
36 <output file="bam_to_sam_out2.sam" name="output1" /> 36 <output file="bam_to_sam_out2.sam" name="output1" lines_diff="2" />
37 </test> 37 </test>
38 <test> 38 <test>
39 <param ftype="bam" name="input1" value="bam_to_sam_in1.bam" /> 39 <param ftype="bam" name="input1" value="bam_to_sam_in1.bam" />
40 <param name="header" value="" /> 40 <param name="header" value="" />
41 <output file="bam_to_sam_out3.sam" name="output1" /> 41 <output file="bam_to_sam_out3.sam" name="output1" />