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comparison macros.xml @ 10:2b7acdca5fe1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/bam_to_sam commit c508c3af0f4121dcc38e0be63db00a604e997b8a
author iuc
date Thu, 19 Jun 2025 12:57:55 +0000
parents 3c661e57a88f
children 69aa7277b44c
comparison
equal deleted inserted replaced
9:3c661e57a88f 10:2b7acdca5fe1
9 tool's version is controlled by the TOOL_VERSION token 9 tool's version is controlled by the TOOL_VERSION token
10 (because their version is ahead of the requirement version .. 10 (because their version is ahead of the requirement version ..
11 please only bump the minor version in order to let the requirement 11 please only bump the minor version in order to let the requirement
12 version catch up eventually). To find the tools check: 12 version catch up eventually). To find the tools check:
13 `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` --> 13 `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` -->
14 <token name="@TOOL_VERSION@">1.20</token> 14 <token name="@TOOL_VERSION@">1.21</token>
15 <token name="@VERSION_SUFFIX@">2</token> 15 <token name="@VERSION_SUFFIX@">0</token>
16 <token name="@PROFILE@">22.05</token> 16 <token name="@PROFILE@">22.05</token>
17 <token name="@FLAGS@"><![CDATA[ 17 <token name="@FLAGS@"><![CDATA[
18 #set $flags = 0 18 #set $flags = 0
19 #if $filter 19 #if $filter
20 #set $flags = sum(map(int, str($filter).split(','))) 20 #set $flags = sum(map(int, str($filter).split(',')))
218 </xml> 218 </xml>
219 219
220 <xml name="citations"> 220 <xml name="citations">
221 <citations> 221 <citations>
222 <citation type="doi">10.1093/gigascience/giab008</citation> 222 <citation type="doi">10.1093/gigascience/giab008</citation>
223 <citation type="doi">10.1093/bioinformatics/btr076</citation>
223 </citations> 224 </citations>
224 </xml> 225 </xml>
225 <xml name="version_command"> 226 <xml name="version_command">
226 <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command> 227 <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
227 </xml> 228 </xml>