Mercurial > repos > devteam > bamtools

comparison bamtools.xml @ 10:887a9bf73d1a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools commit 7d29261847d2514a1ac4246e0b8bff1d32463434
author iuc
date Wed, 11 Feb 2026 14:31:11 +0000
parents 8eb649e67987
children
comparison
equal deleted inserted replaced
9:8eb649e67987 10:887a9bf73d1a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="bamtools" name="Operate on and transform BAM" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 2 <tool id="bamtools" name="Operate on and transform BAM" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
3 <description>datasets in various ways</description> 3 <description>datasets in various ways</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="xrefs"/> 7 <expand macro="xrefs"/>
8 <expand macro="requirements"> 8 <expand macro="requirements"/>
9 <requirement type="package" version="1.16.1">samtools</requirement>
10 </expand>
11 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
12 ##set up input files 10 ##set up input files
13 ln -s '${input_bams}' localbam.bam && 11 ln -s '${input_bams}' localbam.bam &&
14 ln -s '${input_bams.metadata.bam_index}' localbam.bam.bai && 12 ln -s '${input_bams.metadata.bam_index}' localbam.bam.bai &&
15 #if str( $analysis_type.analysis_type_selector ) == 'convert': 13 #if str( $analysis_type.analysis_type_selector ) == 'convert':