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comparison bamtools.xml @ 9:8eb649e67987 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools commit eca92f6ec1b61f1a772b308cfcb1c7b3b7b22ea5
author iuc
date Wed, 18 Jun 2025 08:33:31 +0000
parents 970e6333f07e
children 887a9bf73d1a
comparison
equal deleted inserted replaced
8:970e6333f07e 9:8eb649e67987
158 </data> 158 </data>
159 </outputs> 159 </outputs>
160 <tests> 160 <tests>
161 <test> 161 <test>
162 <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/> 162 <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/>
163 <param name="analysis_type_selector" value="convert"/> 163 <conditional name="analysis_type">
164 <param name="format_type_selector" value="pileup"/> 164 <param name="analysis_type_selector" value="convert"/>
165 <param name="reference_source_selector" value="history" /> 165 <conditional name="format_type">
166 <param name="mapqual" value="true" /> 166 <param name="format_type_selector" value="pileup"/>
167 <param name="ref_file" ftype="fasta" value="bamtools-fasta.fa"/> 167 <conditional name="reference_source">
168 <param name="reference_source_selector" value="history" />
169 <param name="ref_file" ftype="fasta" value="bamtools-fasta.fa"/>
170 </conditional>
171 <param name="mapqual" value="true" />
172 </conditional>
173 </conditional>
168 <output name="out_file1" file="bamtools-convert-pileup.pu" /> 174 <output name="out_file1" file="bamtools-convert-pileup.pu" />
169 </test> 175 </test>
170 <test> 176 <test>
171 <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/> 177 <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/>
172 <param name="analysis_type_selector" value="count"/> 178 <conditional name="analysis_type">
179 <param name="analysis_type_selector" value="count"/>
180 </conditional>
173 <output name="out_file1" file="bamtools-count.tab" /> 181 <output name="out_file1" file="bamtools-count.tab" />
174 </test> 182 </test>
175 <test> 183 <test>
176 <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/> 184 <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/>
177 <param name="analysis_type_selector" value="coverage"/> 185 <conditional name="analysis_type">
186 <param name="analysis_type_selector" value="coverage"/>
187 </conditional>
178 <output name="out_file1" file="bamtools-coverage.tab" /> 188 <output name="out_file1" file="bamtools-coverage.tab" />
179 </test> 189 </test>
180 <test> 190 <test>
181 <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/> 191 <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/>
182 <param name="analysis_type_selector" value="header"/> 192 <conditional name="analysis_type">
193 <param name="analysis_type_selector" value="header"/>
194 </conditional>
183 <output name="out_file1" file="bamtools-header.txt" /> 195 <output name="out_file1" file="bamtools-header.txt" />
184 </test> 196 </test>
185 </tests> 197 </tests>
186 <help> 198 <help>
187 199