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diff bamtools.xml @ 6:e4490b16f0d7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/bamtools/bamtools commit 29fe5251fcc37a22a1ce479d7a39f5007a4f02ec
author iuc
date Wed, 11 Jan 2023 08:14:24 +0000
parents befc9dad4ca8
children ddb22028b552
line wrap: on
line diff
--- a/bamtools.xml	Sat Nov 27 10:02:03 2021 +0000
+++ b/bamtools.xml	Wed Jan 11 08:14:24 2023 +0000
@@ -4,9 +4,10 @@
     <macros>
           <import>macros.xml</import>
     </macros>
-    <expand macro="requirements" />
-    <command detect_errors="exit_code">
-        <![CDATA[
+    <expand macro="requirements">
+        <requirement type="package" version="1.16.1">samtools</requirement>
+    </expand>
+    <command detect_errors="exit_code"><![CDATA[
             ##set up input files
             ln -s '${input_bams}' localbam.bam &&
             ln -s '${input_bams.metadata.bam_index}' localbam.bam.bai &&
@@ -60,8 +61,7 @@
                 -out '$out_file1'
             #end if
             -in localbam.bam
-        ]]>
-    </command>
+    ]]></command>
     <inputs>
         <param name="input_bams" type="data" format="bam" label="BAM dataset(s) to filter" />
         <conditional name="analysis_type">