# HG changeset patch
# User iuc
# Date 1673612251 0
# Node ID ddb22028b55237d9100203a5655ea037e4af6782
# Parent  e4490b16f0d71e6103b9c7491ec7b0fe6f068cd3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools commit 862f05b5053f55def8007194a702019418697cb5

diff -r e4490b16f0d7 -r ddb22028b552 bamtools.xml
--- a/bamtools.xml	Wed Jan 11 08:14:24 2023 +0000
+++ b/bamtools.xml	Fri Jan 13 12:17:31 2023 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
-<tool id="bamtools" name="Convert, Merge, Randomize" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
-    <description>BAM datasets and perform other transformations</description>
+<tool id="bamtools" name="Operate on and transform BAM" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+    <description>datasets in various ways</description>
     <macros>
           <import>macros.xml</import>
     </macros>
@@ -146,6 +146,7 @@
                 <when input="analysis_type.format_type.format_type_selector" value="fastq" format="fastq" />
                 <when input="analysis_type.format_type.format_type_selector" value="sam" format="sam" />
                 <when input="analysis_type.format_type.format_type_selector" value="pileup" format="pileup" />
+                <when input="analysis_type.format_type.format_type_selector" value="json" format="json" />
                 <when input="analysis_type.analysis_type_selector" value="count" format="tabular" />
                 <when input="analysis_type.analysis_type_selector" value="coverage" format="tabular" />
                 <when input="analysis_type.analysis_type_selector" value="merge" format="bam" />
@@ -192,14 +193,13 @@
 
 **Convert**
 
-Converts BAM dataset(s) into BED, FASTA, FASTQ, JSON, Pileup, SAM, or YAML formats. Note that the conversion to the pileup format requires providing a reference sequence either
-cashed at this Galaxy instance, or provided by you as a FASTA dataset from History.
+Converts BAM dataset(s) into BED, FASTA, FASTQ, JSON, Pileup, SAM, or YAML formats. Note that the conversion to the pileup format requires providing a reference sequence either cached on this Galaxy instance, or provided by you as a FASTA dataset from History.
 
 -----
 
 **Count**
 
-Counts a number of alignments in a BAM dataset(s).
+Counts the number of alignments in a BAM dataset(s).
 
 -----
 
@@ -211,13 +211,13 @@
 
 **Header**
 
-Prints header from a BAM dataset(s).
+Prints the header of a BAM dataset.
 
 ------
 
 **Merge**
 
-Merges multiple BAM datasets into a single one. Obviously, you need to select multiple BAMs as input, which is done by pressing the "**Add new BAM dataset(s) to filter**" button.
+Merges multiple BAM datasets into a single one.
 
 ------
 
diff -r e4490b16f0d7 -r ddb22028b552 macros.xml
--- a/macros.xml	Wed Jan 11 08:14:24 2023 +0000
+++ b/macros.xml	Fri Jan 13 12:17:31 2023 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">2.5.2</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">bamtools</requirement>