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changeset 10:887a9bf73d1a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools commit 7d29261847d2514a1ac4246e0b8bff1d32463434
author iuc
date Wed, 11 Feb 2026 14:31:11 +0000
parents 8eb649e67987
children
files bamtools.xml macros.xml
diffstat 2 files changed, 6 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/bamtools.xml	Wed Jun 18 08:33:31 2025 +0000
+++ b/bamtools.xml	Wed Feb 11 14:31:11 2026 +0000
@@ -1,13 +1,11 @@
 <?xml version="1.0"?>
-<tool id="bamtools" name="Operate on and transform BAM" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="bamtools" name="Operate on and transform BAM" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>datasets in various ways</description>
     <macros>
           <import>macros.xml</import>
     </macros>
     <expand macro="xrefs"/>
-    <expand macro="requirements">
-        <requirement type="package" version="1.16.1">samtools</requirement>
-    </expand>
+    <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
             ##set up input files
             ln -s '${input_bams}' localbam.bam &&
--- a/macros.xml	Wed Jun 18 08:33:31 2025 +0000
+++ b/macros.xml	Wed Feb 11 14:31:11 2026 +0000
@@ -1,7 +1,8 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">2.5.2</token>
-    <token name="@VERSION_SUFFIX@">3</token>
+    <token name="@TOOL_VERSION@">2.5.3</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">24.2</token>
     <xml name="xrefs">
         <xrefs>
             <xref type="bio.tools">bamtools</xref>
@@ -10,7 +11,7 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">bamtools</requirement>
-            <yield />
+            <requirement type="package" version="1.23">samtools</requirement>
         </requirements>
     </xml>
     <xml name="citations">