Mercurial > repos > devteam > bamtools_filter

comparison bamtools-filter.xml @ 3:29ba2103739c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/bamtools/bamtools_filter commit 7c56948b330097432cd68df4b865b01ca7c788dc
author devteam
date Fri, 13 Jan 2017 11:02:24 -0500
parents 2098a49ddf66
children 3213c223678c
comparison
equal deleted inserted replaced
2:2098a49ddf66 3:29ba2103739c
55 </when> 55 </when>
56 <when value="cigar"> 56 <when value="cigar">
57 <param name="bam_property_value" type="text" value="101M" label="Filter on this CIGAR string" help="Default (101M) is for 101 continuously matched bases"/> 57 <param name="bam_property_value" type="text" value="101M" label="Filter on this CIGAR string" help="Default (101M) is for 101 continuously matched bases"/>
58 </when> 58 </when>
59 <when value="insertSize"> 59 <when value="insertSize">
60 <param name="bam_property_value" type="text" value=">=250" label="Filter on inster size" help="You can use &gt;, &lt;, =, and ! (not) in your expression. E.g., to select pairs with inster size above 250 nt use &quot;>=250&quot;"> 60 <param name="bam_property_value" type="text" value=">=250" label="Filter on insert size" help="You can use &gt;, &lt;, =, and ! (not) in your expression. E.g., to select pairs with insert size above 250 nt use &quot;>=250&quot;">
61 <sanitizer invalid_char=""> 61 <sanitizer invalid_char="">
62 <valid initial="string.letters,string.digits"><add value="&gt;"/><add value="&lt;"/><add value="!="/></valid> 62 <valid initial="string.letters,string.digits"><add value="&gt;"/><add value="&lt;"/><add value="!="/><add value="-"/></valid>
63 </sanitizer> 63 </sanitizer>
64 </param> 64 </param>
65 </when> 65 </when>
66 <when value="isDuplicate"> 66 <when value="isDuplicate">
67 <param name="bam_property_value" type="boolean" truevalue="true" falsevalue="false" label="Select reads makwed as duplicates" help="Checked = Read IS Duplicate, Empty = Read is NOT Duplicate" /> 67 <param name="bam_property_value" type="boolean" truevalue="true" falsevalue="false" label="Select reads makwed as duplicates" help="Checked = Read IS Duplicate, Empty = Read is NOT Duplicate" />