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comparison bamtools-filter.xml @ 11:993b19f20c76 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools_filter commit 5ebe920838ab3c36e93d620c479df17f43f8e336
author iuc
date Fri, 15 Mar 2024 13:49:20 +0000
parents 108db6635177
children
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10:108db6635177 11:993b19f20c76
1 <tool id="bamFilter" name="Filter BAM" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="bamFilter" name="Filter BAM" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>datasets on a variety of attributes</description> 2 <description>datasets on a variety of attributes</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="xrefs"/>
6 <expand macro="requirements" /> 7 <expand macro="requirements" />
7 <command detect_errors="exit_code"> 8 <command detect_errors="exit_code">
8 <![CDATA[ 9 <![CDATA[
9 cp '$script_file' '$out_file2' && 10 cp '$script_file' '$out_file2' &&
10 ln -s '${input_bam}' localbam.bam && 11 ln -s '${input_bam}' localbam.bam &&
169 </when> 170 </when>
170 </conditional> 171 </conditional>
171 </repeat> 172 </repeat>
172 </repeat> 173 </repeat>
173 <conditional name="rule_configuration"> 174 <conditional name="rule_configuration">
174 <param name="rules_selector" type="boolean" truevalue="true" falsevalue="false" label="Would you like to set rules?" help="Allows complex logical constructs. See Example 4 below." /> 175 <param name="rules_selector" type="select" label="Would you like to set rules?" help="Allows complex logical constructs. See Example 4 below.">
176 <option value="false">False</option>
177 <option value="true" selected="true">True</option>
178 </param>
175 <when value="false"/> 179 <when value="false"/>
176 <when value="true"> 180 <when value="true">
177 <param name="rules" type="text" label="Enter rules here" help="This option can only be used with at least two conditions. Read help below (Example 4) to understand how it works." > 181 <param name="rules" type="text" label="Enter rules here" help="This option can only be used with at least two conditions. Read help below (Example 4) to understand how it works." >
178 <sanitizer invalid_char=""> 182 <sanitizer invalid_char="">
179 <valid initial="string.printable"/> 183 <valid initial="string.printable"/>