Mercurial > repos > devteam > bamtools_filter

diff bamtools-filter.xml @ 7:4fe8a75334c8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/bamtools/bamtools_filter commit c72d58cbe6a99bc8f9fde26fdde45b0c222890df
author iuc
date Fri, 20 Jul 2018 04:14:40 -0400
parents 82658c080fd0
children 1dfd95ee241e
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--- a/bamtools-filter.xml	Tue Jun 05 15:29:04 2018 -0400
+++ b/bamtools-filter.xml	Fri Jul 20 04:14:40 2018 -0400
@@ -9,6 +9,7 @@
             cp '$script_file' '$out_file2' &&
             ln -s '${input_bam}' localbam.bam &&
             ln -s '${input_bam.metadata.bam_index}' localbam.bam.bai &&
+            cat '$script_file' &&
             bamtools filter -script '$script_file' -in localbam.bam -out '$out_file1'
         ]]>
     </command>