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comparison blast_datatypes.txt @ 5:b3a3ba0c1d47 draft

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Uploaded v0.0.15 which updates the BLAST database definitions. Fixes a MetadataElement bug and includes more of the optional BLAST database files (contribution from Nicola Soranzo).
author peterjc
date Wed, 20 Mar 2013 10:39:27 -0400
parents f9a7783ed7b6
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4:f9a7783ed7b6 5:b3a3ba0c1d47
1 Galaxy datatypes for NCBI BLAST+ suite 1 Galaxy datatypes for NCBI BLAST+ suite
2 ====================================== 2 ======================================
3 3
4 These Galaxy datatypes are copyright 2010-2012 by Peter Cock, The James Hutton 4 These Galaxy datatypes are copyright 2010-2013 by Peter Cock, The James Hutton
5 Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. 5 Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
6 Contributions/revisions copyright 2012 Edward Kirton. All rights reserved.
7 Contributions/revisions copyright 2013 Nicola Soranzo. All rights reserved.
8
6 See the licence text below. 9 See the licence text below.
7 10
8 Note that these files (and the associated BLAST+ wrappers) were originally 11 Note that these files (and the associated BLAST+ wrappers) were originally
9 distributed as part of the main Galaxy repository, but as of August 2012 moved 12 distributed as part of the main Galaxy repository, but as of August 2012 moved
10 to the Galaxy Tool Shed as 'blast_datatypes' (and 'ncbi_blast_plus' for the 13 to the Galaxy Tool Shed as 'blast_datatypes' (and 'ncbi_blast_plus' for the
21 v0.0.11 - Final revision as part of the Galaxy main repository, and the 24 v0.0.11 - Final revision as part of the Galaxy main repository, and the
22 first release via the Tool Shed 25 first release via the Tool Shed
23 v0.0.13 - Uses blast.py instead of xml.py to define the datatypes 26 v0.0.13 - Uses blast.py instead of xml.py to define the datatypes
24 v0.0.14 - Includes datatypes for protein and nucleotide BLAST databases 27 v0.0.14 - Includes datatypes for protein and nucleotide BLAST databases
25 (based on work by Edward Kirton) 28 (based on work by Edward Kirton)
29 v0.0.15 - Fixes a MetadataElement bug and includes more of the optional
30 BLAST database files (contribution from Nicola Soranzo)
26 31
27 32
28 Installation 33 Installation
29 ============ 34 ============
30 35
59 ========== 64 ==========
60 65
61 BLAST+ datatypes and wrappers, and other tools are being developed on the 66 BLAST+ datatypes and wrappers, and other tools are being developed on the
62 following hg branch: http://bitbucket.org/peterjc/galaxy-central/src/tools 67 following hg branch: http://bitbucket.org/peterjc/galaxy-central/src/tools
63 68
64 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball I use 69 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball I use
65 the following command from the Galaxy tools/ncbi_blast_plus folder: 70 the following command from the Galaxy tools/ncbi_blast_plus folder:
66 71
67 $ tar -czf blast_datatypes.tar.gz blast_datatypes.txt datatypes_conf.xml blast.py 72 $ tar -czf blast_datatypes.tar.gz blast_datatypes.txt datatypes_conf.xml blast.py
68 73
69 Check this worked: 74 Check this worked: