Mercurial > repos > devteam > blast_datatypes
changeset 1:10dce68b584b draft
Uploaded with readme file (no code changes). Calling this v0.0.11 to match the BLAST+ wrappers.
author | peterjc |
---|---|
date | Thu, 23 Aug 2012 09:33:16 -0400 |
parents | e1c29f302301 |
children | 45ba7c750bc8 |
files | datatypes_conf.txt |
diffstat | 1 files changed, 72 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/datatypes_conf.txt Thu Aug 23 09:33:16 2012 -0400 @@ -0,0 +1,72 @@ +Galaxy datatypes for NCBI BLAST+ suite +====================================== + +These Galaxy datatypes are copyright 2010-2012 by Peter Cock, The James Hutton +Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. +See the licence text below. + +Note that these files (and the associated BLAST+ wrappers) were originally +distributed as part of the main Galaxy repository, but as of August 2012 moved +to the Galaxy Tool Shed as 'blast_datatypes' (and 'ncbi_blast_plus' for the +wrappers). My thanks to Dannon Baker from the Galaxy development team for his +assistance with this. + + +Installation +============ + +Doing this automatically via the Galaxy Tool Shed is probably simplest. + + +History +======= + +These versions numbers match those for 'ncbi_blast_plus', but are not used +explicitly in the datatypes themselves. + +v0.0.11 - Final revision as part of the Galaxy main repository, and the + first release via the Tool Shed + + +Developers +========== + +BLAST+ datatypes and wrappers, and other tools are being developed on the +following hg branch: http://bitbucket.org/peterjc/galaxy-central/src/tools + +For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball I use +the following command from the Galaxy tools/ncbi_blast_plus folder: + +$ tar -czf blast_datatypes.tar.gz datatypes_conf.txt datatypes_conf.xml xml.py + +Check this worked: + +$ tar -tzf blast_datatypes.tar.gz +datatypes_conf.txt +datatypes_conf.xml +xml.py + + +Licence (MIT/BSD style) +======================= + +Permission to use, copy, modify, and distribute this software and its +documentation with or without modifications and for any purpose and +without fee is hereby granted, provided that any copyright notices +appear in all copies and that both those copyright notices and this +permission notice appear in supporting documentation, and that the +names of the contributors or copyright holders not be used in +advertising or publicity pertaining to distribution of the software +without specific prior permission. + +THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL +WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED +WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE +CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT +OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS +OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE +OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE +OR PERFORMANCE OF THIS SOFTWARE. + +NOTE: This is the licence for the Galaxy BLAST datatypes only. BLAST+ +and associated data files are available and licenced separately.