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comparison bowtie2_wrapper.xml @ 30:03e9b2fbc005 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bowtie2 commit 3ae56dd669038a65c3f60ba64c67cbefb254ab5e
author iuc
date Thu, 03 Nov 2022 19:37:50 +0000
parents f6877ad76b00
children 0d4acadabb04
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29:f6877ad76b00 30:03e9b2fbc005
1 <tool id="bowtie2" name="Bowtie2" version="@TOOL_VERSION@+galaxy1" profile="20.05"> 1 <tool id="bowtie2" name="Bowtie2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
2 <description>- map reads against reference genome</description> 2 <description>- map reads against reference genome</description>
3 <macros> 3 <macros>
4 <import>bowtie2_macros.xml</import> 4 <import>bowtie2_macros.xml</import>
5 </macros> 5 </macros>
6 <xrefs> 6 <xrefs>
7 <xref type="bio.tools">bowtie2</xref> 7 <xref type="bio.tools">bowtie2</xref>
8 </xrefs> 8 </xrefs>
9 <requirements> 9 <requirements>
10 <requirement type="package" version="@TOOL_VERSION@">bowtie2</requirement> 10 <requirement type="package" version="@TOOL_VERSION@">bowtie2</requirement>
11 <requirement type="package" version="1.14">samtools</requirement> 11 <requirement type="package" version="1.16.1">samtools</requirement>
12 </requirements> 12 </requirements>
13 <version_command>bowtie2 --version</version_command> 13 <version_command>bowtie2 --version</version_command>
14 <command detect_errors="exit_code"><![CDATA[ 14 <command detect_errors="exit_code"><![CDATA[
15 ## Use pipefail if available to quit with first non-zero exit code 15 ## Use pipefail if available to quit with first non-zero exit code
16 set -o | grep -q pipefail && set -o pipefail; 16 set -o | grep -q pipefail && set -o pipefail;