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comparison bowtie2_wrapper.xml @ 13:12450efac659 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie2 commit b22fc2e7243522b264f3d5d00706df8d18366405
author devteam
date Mon, 09 Jan 2017 04:31:00 -0500
parents 781e3a3b9d31
children 937aa69e715f
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12:781e3a3b9d31 13:12450efac659
14 #if str($reference_genome.source) == "history": 14 #if str($reference_genome.source) == "history":
15 bowtie2-build --threads \${GALAXY_SLOTS:-4} '$reference_genome.own_file' genome && 15 bowtie2-build --threads \${GALAXY_SLOTS:-4} '$reference_genome.own_file' genome &&
16 ln -s -f '$reference_genome.own_file' genome.fa && 16 ln -s -f '$reference_genome.own_file' genome.fa &&
17 #set index_path = 'genome' 17 #set index_path = 'genome'
18 #else: 18 #else:
19 #set index_path = '$reference_genome.index.fields.path' 19 #set index_path = $reference_genome.index.fields.path
20 #end if 20 #end if
21 21
22 ## execute bowtie2 22 ## execute bowtie2
23 23
24 bowtie2 24 bowtie2