Mercurial > repos > devteam > bowtie2
comparison bowtie2_macros.xml @ 23:17062a0decb7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bowtie2 commit d611e968158b012c10d3f8b661af1f07313f06d7
| author | iuc |
|---|---|
| date | Wed, 06 Jun 2018 17:23:32 -0400 |
| parents | 66f992977578 |
| children | 09b2cdb7ace5 |
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| 22:c3dd1aeb7d07 | 23:17062a0decb7 |
|---|---|
| 321 </xml> | 321 </xml> |
| 322 <xml name="align_unalign"> | 322 <xml name="align_unalign"> |
| 323 <param name="unaligned_file" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Write unaligned reads (in fastq format) to separate file(s)" help="--un/--un-conc (possibly with -gz or -bz2); This triggers --un parameter for single reads and --un-conc for paired reads" /> | 323 <param name="unaligned_file" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Write unaligned reads (in fastq format) to separate file(s)" help="--un/--un-conc (possibly with -gz or -bz2); This triggers --un parameter for single reads and --un-conc for paired reads" /> |
| 324 <param name="aligned_file" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Write aligned reads (in fastq format) to separate file(s)" help="--al/--al-conc (possibly with -gz or -bz2); This triggers --al parameter for single reads and --al-conc for paired reads" /> | 324 <param name="aligned_file" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Write aligned reads (in fastq format) to separate file(s)" help="--al/--al-conc (possibly with -gz or -bz2); This triggers --al parameter for single reads and --al-conc for paired reads" /> |
| 325 </xml> | 325 </xml> |
| 326 <xml name="dbKeyActions"> | |
| 327 <conditional name="reference_genome.source"> | |
| 328 <when value="indexed"> | |
| 329 <action type="metadata" name="dbkey"> | |
| 330 <option type="from_data_table" name="bowtie2_indexes" column="1"> | |
| 331 <filter type="param_value" ref="reference_genome.index" column="0"/> | |
| 332 </option> | |
| 333 </action> | |
| 334 </when> | |
| 335 <when value="history"> | |
| 336 <action type="metadata" name="dbkey"> | |
| 337 <option type="from_param" name="reference_genome.own_file" param_attribute="dbkey" /> | |
| 338 </action> | |
| 339 </when> | |
| 340 </conditional> | |
| 341 </xml> | |
| 326 </macros> | 342 </macros> |