Mercurial > repos > devteam > bowtie2
comparison bowtie2_wrapper.xml @ 6:e23b0cdeeba6 draft
planemo upload commit 5ad726dc73203a704666033cd3bf70b82575978f
author | devteam |
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date | Wed, 26 Aug 2015 12:46:11 -0400 |
parents | 42bb952b4e3c |
children | 4f92dccc808a |
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5:42bb952b4e3c | 6:e23b0cdeeba6 |
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74 #end if | 74 #end if |
75 | 75 |
76 ## Read group information. | 76 ## Read group information. |
77 @define_read_group_helpers@ | 77 @define_read_group_helpers@ |
78 #if str( $library.type ) == "single": | 78 #if str( $library.type ) == "single": |
79 #set $rg_auto_name = $read_group_name_default($library.input_1) | 79 #set $rg_auto_name = $read_group_name_default($library.input_1) |
80 #elif str( $library.type ) == "paired": | 80 #elif str( $library.type ) == "paired": |
81 #set $rg_auto_name = $read_group_name_default($library.input_1, $library.input_2) | 81 #set $rg_auto_name = $read_group_name_default($library.input_1, $library.input_2) |
82 #else | 82 #else |
83 #set $rg_auto_name = $read_group_name_default($library.input_1) | 83 #set $rg_auto_name = $read_group_name_default($library.input_1) |
84 #end if | 84 #end if |
85 @set_use_rg_var@ | 85 @set_use_rg_var@ |
86 @set_read_group_vars@ | 86 @set_read_group_vars@ |
87 #if $use_rg | 87 #if $use_rg |
88 $format_read_group("", $rg_id, '"', arg='--rg-id ') | 88 $format_read_group("", $rg_id, '"', arg='--rg-id ') |