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comparison bowtie2_wrapper.xml @ 6:e23b0cdeeba6 draft

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planemo upload commit 5ad726dc73203a704666033cd3bf70b82575978f
author devteam
date Wed, 26 Aug 2015 12:46:11 -0400
parents 42bb952b4e3c
children 4f92dccc808a
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5:42bb952b4e3c 6:e23b0cdeeba6
74 #end if 74 #end if
75 75
76 ## Read group information. 76 ## Read group information.
77 @define_read_group_helpers@ 77 @define_read_group_helpers@
78 #if str( $library.type ) == "single": 78 #if str( $library.type ) == "single":
79 #set $rg_auto_name = $read_group_name_default($library.input_1) 79 #set $rg_auto_name = $read_group_name_default($library.input_1)
80 #elif str( $library.type ) == "paired": 80 #elif str( $library.type ) == "paired":
81 #set $rg_auto_name = $read_group_name_default($library.input_1, $library.input_2) 81 #set $rg_auto_name = $read_group_name_default($library.input_1, $library.input_2)
82 #else 82 #else
83 #set $rg_auto_name = $read_group_name_default($library.input_1) 83 #set $rg_auto_name = $read_group_name_default($library.input_1)
84 #end if 84 #end if
85 @set_use_rg_var@ 85 @set_use_rg_var@
86 @set_read_group_vars@ 86 @set_read_group_vars@
87 #if $use_rg 87 #if $use_rg
88 $format_read_group("", $rg_id, '"', arg='--rg-id ') 88 $format_read_group("", $rg_id, '"', arg='--rg-id ')