# HG changeset patch
# User devteam
# Date 1483954260 18000
# Node ID 12450efac659d99c955de03973ed835383cfc43b
# Parent  781e3a3b9d315a26fd3f5ef081432ed4341437aa
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie2 commit b22fc2e7243522b264f3d5d00706df8d18366405

diff -r 781e3a3b9d31 -r 12450efac659 bowtie2_wrapper.xml
--- a/bowtie2_wrapper.xml	Sun Jan 08 07:58:27 2017 -0500
+++ b/bowtie2_wrapper.xml	Mon Jan 09 04:31:00 2017 -0500
@@ -16,7 +16,7 @@
             ln -s -f '$reference_genome.own_file' genome.fa &&
             #set index_path = 'genome'
         #else:
-            #set index_path = '$reference_genome.index.fields.path'
+            #set index_path = $reference_genome.index.fields.path
         #end if
 
         ## execute bowtie2
diff -r 781e3a3b9d31 -r 12450efac659 tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Jan 08 07:58:27 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="bowtie2" version="2.2.6">
-      <repository changeset_revision="0d9cd7487cc9" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="samtools" version="1.2">
-      <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>