# HG changeset patch
# User iuc
# Date 1523400049 14400
# Node ID 3ba8d45631290d795e3b5eee481147deb2336e71
# Parent  dc1639b66f1243967ee5a8655c7058f662033fbc
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bowtie2 commit 9bbf35d7f47e5ab6b78248c9907b71446d4e7b0c

diff -r dc1639b66f12 -r 3ba8d4563129 bowtie2_wrapper.xml
--- a/bowtie2_wrapper.xml	Tue Jan 23 12:20:20 2018 -0500
+++ b/bowtie2_wrapper.xml	Tue Apr 10 18:40:49 2018 -0400
@@ -9,6 +9,8 @@
     </requirements>
     <version_command>bowtie2 --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
+## Use pipefail if available to quit with first non-zero exit code
+set -o | grep -q pipefail && set -o pipefail;
 ## prepare bowtie2 index
 #set index_path = ''
 #if str($reference_genome.source) == "history":